Query 000968
Match_columns 1207
No_of_seqs 420 out of 2785
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 1E-79 2.3E-84 753.9 64.4 556 601-1170 5-561 (621)
2 PRK03659 glutathione-regulated 100.0 1.7E-79 3.6E-84 750.5 65.1 560 597-1170 1-561 (601)
3 PRK10669 putative cation:proto 100.0 5.6E-71 1.2E-75 671.6 60.8 544 597-1142 2-550 (558)
4 COG0475 KefB Kef-type K+ trans 100.0 2.9E-44 6.2E-49 420.3 43.2 379 598-989 3-386 (397)
5 PLN03159 cation/H(+) antiporte 100.0 3E-43 6.5E-48 443.0 42.4 411 602-1030 44-480 (832)
6 COG4651 RosB Kef-type K+ trans 100.0 1E-43 2.3E-48 384.1 31.9 393 597-991 2-395 (408)
7 PRK05326 potassium/proton anti 100.0 5.3E-38 1.1E-42 383.1 36.6 372 601-981 6-384 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 2.1E-37 4.7E-42 359.3 -2.2 362 609-981 4-375 (380)
9 TIGR00932 2a37 transporter, mo 100.0 9.3E-33 2E-37 308.0 33.4 272 611-890 2-273 (273)
10 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.6E-29 3.6E-34 309.0 41.6 348 603-956 15-386 (810)
11 KOG1650 Predicted K+/H+-antipo 100.0 9.4E-30 2E-34 317.3 25.6 369 601-982 23-419 (769)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.9E-27 4.1E-32 288.0 38.4 330 607-949 4-363 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 1.1E-25 2.4E-30 266.3 41.9 341 601-950 6-366 (429)
14 COG3263 NhaP-type Na+/H+ and K 100.0 7.8E-27 1.7E-31 263.7 30.0 364 602-977 7-378 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.2E-24 2.6E-29 264.4 37.7 332 613-950 21-377 (559)
16 PRK10537 voltage-gated potassi 99.9 3.1E-21 6.7E-26 225.6 29.6 131 1009-1141 240-370 (393)
17 PF02254 TrkA_N: TrkA-N domain 99.8 7.7E-20 1.7E-24 178.0 12.4 116 1012-1127 1-116 (116)
18 KOG1965 Sodium/hydrogen exchan 99.8 2.9E-18 6.3E-23 202.8 27.0 342 601-949 35-413 (575)
19 KOG4505 Na+/H+ antiporter [Ino 99.7 1.1E-14 2.3E-19 161.3 27.4 327 618-952 31-382 (467)
20 COG0569 TrkA K+ transport syst 99.7 4E-16 8.7E-21 170.5 13.4 132 1011-1142 2-135 (225)
21 PRK14853 nhaA pH-dependent sod 99.7 1.8E-13 3.8E-18 160.3 34.1 267 652-952 62-362 (423)
22 PRK09496 trkA potassium transp 99.6 9.3E-15 2E-19 174.2 13.4 133 1009-1142 231-365 (453)
23 COG1226 Kch Kef-type K+ transp 99.6 6.1E-14 1.3E-18 146.0 17.7 163 1005-1167 17-180 (212)
24 PRK09496 trkA potassium transp 99.5 1.4E-13 2.9E-18 164.2 12.3 132 1011-1142 2-139 (453)
25 TIGR00773 NhaA Na+/H+ antiport 99.4 1.7E-10 3.6E-15 133.4 26.6 268 652-953 52-344 (373)
26 KOG1966 Sodium/hydrogen exchan 99.3 1.6E-12 3.5E-17 153.9 7.9 315 626-946 68-405 (670)
27 PRK14856 nhaA pH-dependent sod 99.2 1.2E-09 2.6E-14 128.1 25.1 266 652-952 68-397 (438)
28 PRK14854 nhaA pH-dependent sod 99.1 1.8E-08 3.9E-13 116.4 25.0 267 653-953 57-348 (383)
29 PRK14855 nhaA pH-dependent sod 99.1 1.6E-08 3.5E-13 118.3 24.5 263 653-953 64-383 (423)
30 PRK09560 nhaA pH-dependent sod 99.1 2.6E-08 5.6E-13 115.6 25.5 266 653-952 60-352 (389)
31 PRK09561 nhaA pH-dependent sod 99.1 3.5E-08 7.6E-13 114.3 25.6 267 653-953 60-351 (388)
32 PF06965 Na_H_antiport_1: Na+/ 99.0 3.6E-09 7.8E-14 122.3 13.8 269 652-954 55-352 (378)
33 COG3004 NhaA Na+/H+ antiporter 99.0 2.3E-07 5E-12 103.9 26.8 264 655-954 65-355 (390)
34 PRK12460 2-keto-3-deoxyglucona 98.1 0.00052 1.1E-08 78.4 22.7 132 847-983 169-303 (312)
35 PF03812 KdgT: 2-keto-3-deoxyg 98.0 0.00082 1.8E-08 76.6 22.8 275 629-983 15-309 (314)
36 PF05684 DUF819: Protein of un 98.0 0.006 1.3E-07 72.4 31.0 93 849-944 245-337 (378)
37 PF03616 Glt_symporter: Sodium 97.7 0.027 5.9E-07 66.7 30.1 89 842-931 245-339 (368)
38 TIGR00210 gltS sodium--glutama 97.6 0.055 1.2E-06 64.8 30.2 90 842-932 243-337 (398)
39 PRK06719 precorrin-2 dehydroge 97.5 0.00012 2.5E-09 76.6 5.8 81 1010-1097 14-94 (157)
40 TIGR00698 conserved hypothetic 97.5 0.23 5E-06 58.2 32.4 103 625-731 30-138 (335)
41 COG0786 GltS Na+/glutamate sym 97.5 0.017 3.8E-07 67.7 22.7 106 828-933 226-342 (404)
42 PF03601 Cons_hypoth698: Conse 97.4 0.062 1.3E-06 62.2 26.6 107 623-733 23-134 (305)
43 COG3180 AbrB Putative ammonia 97.4 0.32 7E-06 57.0 32.0 74 603-681 8-84 (352)
44 PF05145 AmoA: Putative ammoni 97.2 0.21 4.6E-06 58.2 27.3 146 830-983 162-313 (318)
45 TIGR00793 kdgT 2-keto-3-deoxyg 97.1 0.019 4.1E-07 65.4 16.9 131 847-983 174-309 (314)
46 cd01075 NAD_bind_Leu_Phe_Val_D 97.0 0.0045 9.8E-08 67.2 10.6 134 1010-1157 29-168 (200)
47 PF13593 DUF4137: SBF-like CPA 96.9 1.1 2.5E-05 52.1 30.0 30 654-683 30-59 (313)
48 COG2855 Predicted membrane pro 96.9 1.1 2.4E-05 52.2 29.2 116 611-732 21-142 (334)
49 COG0385 Predicted Na+-dependen 96.8 0.36 7.9E-06 56.0 24.6 72 653-727 36-110 (319)
50 PRK06718 precorrin-2 dehydroge 96.7 0.003 6.5E-08 68.7 6.7 82 1010-1096 11-93 (202)
51 PRK04148 hypothetical protein; 96.6 0.0079 1.7E-07 61.5 8.1 90 1010-1103 18-107 (134)
52 PRK03562 glutathione-regulated 96.5 0.066 1.4E-06 67.7 18.0 127 613-742 228-356 (621)
53 TIGR00832 acr3 arsenical-resis 96.5 0.34 7.3E-06 56.8 22.3 97 659-762 47-149 (328)
54 PF00670 AdoHcyase_NAD: S-aden 96.5 0.0056 1.2E-07 64.4 6.6 100 1010-1121 24-126 (162)
55 PRK03659 glutathione-regulated 96.4 0.091 2E-06 66.2 18.2 125 614-741 226-352 (601)
56 TIGR00841 bass bile acid trans 96.4 2.7 5.7E-05 48.4 29.3 98 659-762 12-113 (286)
57 COG0679 Predicted permeases [G 96.4 2.4 5.2E-05 49.3 28.2 133 845-981 168-305 (311)
58 PF03446 NAD_binding_2: NAD bi 96.3 0.02 4.2E-07 60.0 9.7 110 1011-1129 3-121 (163)
59 PRK06522 2-dehydropantoate 2-r 96.2 0.023 5.1E-07 64.5 10.6 106 1011-1118 2-111 (304)
60 COG0798 ACR3 Arsenite efflux p 96.2 3.1 6.7E-05 48.7 27.1 132 629-768 20-163 (342)
61 PF03601 Cons_hypoth698: Conse 96.0 0.11 2.4E-06 60.1 14.4 140 841-983 23-169 (305)
62 TIGR01470 cysG_Nterm siroheme 96.0 0.019 4.1E-07 62.7 7.7 83 1010-1098 10-94 (205)
63 TIGR00932 2a37 transporter, mo 95.9 0.1 2.3E-06 58.8 13.9 139 832-972 4-144 (273)
64 PRK05274 2-keto-3-deoxyglucona 95.8 0.27 5.8E-06 57.5 16.3 136 848-991 177-316 (326)
65 TIGR00518 alaDH alanine dehydr 95.7 0.031 6.7E-07 66.3 8.9 99 1010-1109 168-269 (370)
66 PF03956 DUF340: Membrane prot 95.7 0.09 2E-06 57.0 11.5 128 630-765 2-134 (191)
67 PLN03159 cation/H(+) antiporte 95.7 0.22 4.7E-06 65.1 16.8 115 625-741 292-411 (832)
68 TIGR03802 Asp_Ala_antiprt aspa 95.6 0.081 1.7E-06 66.2 12.2 130 601-737 10-144 (562)
69 PRK10669 putative cation:proto 95.6 0.17 3.7E-06 63.1 14.9 111 829-939 15-126 (558)
70 cd05211 NAD_bind_Glu_Leu_Phe_V 95.5 0.05 1.1E-06 60.0 8.8 112 1010-1131 24-152 (217)
71 TIGR02853 spore_dpaA dipicolin 95.5 0.1 2.2E-06 59.9 11.6 109 1010-1127 152-262 (287)
72 CHL00194 ycf39 Ycf39; Provisio 95.3 0.069 1.5E-06 61.4 9.5 71 1011-1082 2-73 (317)
73 PF13460 NAD_binding_10: NADH( 95.3 0.063 1.4E-06 56.1 8.4 90 1012-1105 1-95 (183)
74 PRK03818 putative transporter; 95.3 0.32 7E-06 60.8 15.8 127 601-731 6-138 (552)
75 PRK12490 6-phosphogluconate de 95.2 0.12 2.6E-06 59.4 11.3 108 1012-1125 3-117 (299)
76 TIGR00872 gnd_rel 6-phosphoglu 95.2 0.12 2.6E-06 59.5 11.2 110 1011-1127 2-118 (298)
77 COG3493 CitS Na+/citrate sympo 95.2 9.4 0.0002 45.3 28.2 161 602-768 47-229 (438)
78 PRK09599 6-phosphogluconate de 95.1 0.17 3.6E-06 58.3 11.7 111 1011-1127 2-119 (301)
79 COG2855 Predicted membrane pro 94.9 0.24 5.2E-06 57.6 12.3 149 833-983 26-178 (334)
80 TIGR03082 Gneg_AbrB_dup membra 94.9 0.38 8.1E-06 50.4 12.8 106 608-717 2-111 (156)
81 COG0475 KefB Kef-type K+ trans 94.8 0.86 1.9E-05 54.8 17.1 116 607-724 225-341 (397)
82 PRK05562 precorrin-2 dehydroge 94.8 0.11 2.4E-06 57.6 8.9 84 1009-1098 25-110 (223)
83 TIGR00698 conserved hypothetic 94.7 0.38 8.3E-06 56.5 13.3 140 842-983 29-175 (335)
84 PRK11281 hypothetical protein; 94.7 25 0.00054 47.7 50.3 20 224-243 162-181 (1113)
85 KOG0994 Extracellular matrix g 94.6 3.6 7.9E-05 53.9 21.9 53 260-312 1590-1642(1758)
86 TIGR00844 c_cpa1 na(+)/h(+) an 94.6 0.34 7.4E-06 62.2 13.5 108 835-942 29-145 (810)
87 PLN02494 adenosylhomocysteinas 94.6 0.085 1.8E-06 64.1 7.8 99 1009-1118 254-354 (477)
88 TIGR00946 2a69 he Auxin Efflux 94.6 12 0.00026 43.5 28.5 133 845-981 182-318 (321)
89 PRK10929 putative mechanosensi 94.6 26 0.00057 47.5 47.5 17 290-306 216-232 (1109)
90 PF05368 NmrA: NmrA-like famil 94.5 0.18 4E-06 55.1 9.8 86 1012-1098 1-94 (233)
91 PF02558 ApbA: Ketopantoate re 94.4 0.053 1.1E-06 55.4 5.1 107 1012-1119 1-113 (151)
92 TIGR00936 ahcY adenosylhomocys 94.3 0.095 2.1E-06 62.9 7.6 65 1010-1083 196-260 (406)
93 PTZ00075 Adenosylhomocysteinas 94.3 0.12 2.6E-06 63.0 8.4 100 1010-1120 255-356 (476)
94 TIGR00831 a_cpa1 Na+/H+ antipo 94.3 0.34 7.3E-06 60.3 12.5 117 829-945 7-124 (525)
95 PRK05326 potassium/proton anti 94.3 0.61 1.3E-05 58.4 14.8 113 829-941 15-131 (562)
96 COG1748 LYS9 Saccharopine dehy 94.3 0.26 5.5E-06 58.9 10.8 116 1011-1130 3-126 (389)
97 PRK12921 2-dehydropantoate 2-r 94.2 0.26 5.6E-06 56.2 10.6 105 1011-1117 2-112 (305)
98 PRK04972 putative transporter; 94.2 0.51 1.1E-05 59.1 13.9 120 603-730 14-136 (558)
99 PRK12475 thiamine/molybdopteri 94.1 0.13 2.9E-06 60.3 8.0 88 1009-1098 24-141 (338)
100 TIGR03082 Gneg_AbrB_dup membra 94.1 1.3 2.8E-05 46.4 14.5 117 830-952 5-127 (156)
101 PF03390 2HCT: 2-hydroxycarbox 94.1 18 0.0004 43.8 29.6 314 602-957 30-393 (414)
102 PRK05476 S-adenosyl-L-homocyst 94.0 0.093 2E-06 63.3 6.6 99 1010-1119 213-313 (425)
103 KOG4673 Transcription factor T 93.9 5 0.00011 50.2 20.6 90 264-359 512-601 (961)
104 cd01065 NAD_bind_Shikimate_DH 93.9 0.13 2.8E-06 52.7 6.6 107 1010-1122 20-134 (155)
105 cd01076 NAD_bind_1_Glu_DH NAD( 93.9 0.41 8.9E-06 53.3 11.0 149 1010-1168 32-206 (227)
106 TIGR00783 ccs citrate carrier 93.9 12 0.00027 44.2 23.3 115 843-957 203-326 (347)
107 PF03435 Saccharop_dh: Sacchar 93.8 0.14 3.1E-06 60.6 7.7 114 1012-1129 1-124 (386)
108 PF13241 NAD_binding_7: Putati 93.8 0.12 2.6E-06 50.2 5.8 78 1010-1098 8-85 (103)
109 PF06826 Asp-Al_Ex: Predicted 93.7 1.9 4.2E-05 46.0 15.1 109 625-735 22-136 (169)
110 TIGR01692 HIBADH 3-hydroxyisob 93.7 0.54 1.2E-05 53.7 11.8 103 1014-1125 1-113 (288)
111 PF03977 OAD_beta: Na+-transpo 93.7 18 0.0004 42.4 26.9 118 608-728 6-136 (360)
112 COG1023 Gnd Predicted 6-phosph 93.6 0.29 6.4E-06 54.4 8.9 110 1014-1128 5-120 (300)
113 TIGR02964 xanthine_xdhC xanthi 93.6 0.4 8.6E-06 54.0 10.3 110 1009-1121 100-212 (246)
114 TIGR01505 tartro_sem_red 2-hyd 93.6 0.44 9.6E-06 54.4 10.9 107 1012-1127 2-118 (291)
115 PRK08306 dipicolinate synthase 93.6 0.2 4.3E-06 57.8 8.1 111 1010-1129 153-265 (296)
116 PF03807 F420_oxidored: NADP o 93.6 0.2 4.4E-06 47.2 6.8 67 1012-1085 2-73 (96)
117 TIGR00210 gltS sodium--glutama 93.6 2.7 5.9E-05 50.6 17.7 151 611-762 229-390 (398)
118 cd00401 AdoHcyase S-adenosyl-L 93.5 0.19 4.2E-06 60.5 8.0 67 1009-1084 202-268 (413)
119 PRK07417 arogenate dehydrogena 93.3 0.22 4.7E-06 56.7 7.8 68 1011-1085 2-69 (279)
120 TIGR03136 malonate_biotin Na+- 93.2 23 0.00049 42.1 24.8 119 607-728 25-173 (399)
121 TIGR03649 ergot_EASG ergot alk 93.2 0.31 6.7E-06 54.9 8.8 114 1012-1129 2-137 (285)
122 PLN02819 lysine-ketoglutarate 93.2 1 2.2E-05 59.9 14.5 114 1008-1125 568-701 (1042)
123 PRK11064 wecC UDP-N-acetyl-D-m 93.1 0.35 7.6E-06 58.4 9.6 73 1010-1084 4-86 (415)
124 PRK11559 garR tartronate semia 93.1 0.7 1.5E-05 52.8 11.6 108 1011-1127 4-121 (296)
125 TIGR03802 Asp_Ala_antiprt aspa 93.1 2.9 6.4E-05 52.6 17.7 107 628-736 417-531 (562)
126 cd05291 HicDH_like L-2-hydroxy 93.1 0.27 5.8E-06 56.9 8.1 93 1011-1111 2-120 (306)
127 PF01758 SBF: Sodium Bile acid 92.9 7.6 0.00016 41.7 18.4 99 659-762 2-104 (187)
128 PRK00094 gpsA NAD(P)H-dependen 92.9 0.24 5.2E-06 57.0 7.4 71 1011-1085 3-83 (325)
129 PF05145 AmoA: Putative ammoni 92.8 1.5 3.2E-05 51.3 13.7 112 602-717 153-268 (318)
130 PTZ00142 6-phosphogluconate de 92.8 0.58 1.3E-05 57.5 10.8 109 1011-1124 3-123 (470)
131 TIGR01625 YidE_YbjL_dupl AspT/ 92.8 1.4 3.1E-05 46.3 12.1 106 628-735 23-137 (154)
132 KOG0994 Extracellular matrix g 92.7 5.3 0.00011 52.5 18.8 63 268-330 1584-1653(1758)
133 PRK15461 NADH-dependent gamma- 92.6 0.55 1.2E-05 54.0 9.9 67 1011-1085 3-69 (296)
134 PRK03818 putative transporter; 92.6 3 6.6E-05 52.3 16.9 128 604-733 372-514 (552)
135 PLN00141 Tic62-NAD(P)-related 92.6 0.69 1.5E-05 51.3 10.3 74 1010-1083 18-95 (251)
136 TIGR00873 gnd 6-phosphoglucona 92.5 0.83 1.8E-05 56.1 11.6 112 1012-1126 2-122 (467)
137 PRK14106 murD UDP-N-acetylmura 92.5 0.26 5.7E-06 59.5 7.3 80 1010-1096 6-90 (450)
138 PF03721 UDPG_MGDP_dh_N: UDP-g 92.4 0.1 2.2E-06 56.1 3.4 72 1011-1084 2-87 (185)
139 TIGR02168 SMC_prok_B chromosom 92.4 16 0.00035 49.2 24.7 13 152-164 709-721 (1179)
140 PRK04863 mukB cell division pr 92.3 4.1 8.9E-05 56.5 18.8 28 338-365 449-476 (1486)
141 PLN02688 pyrroline-5-carboxyla 92.3 0.58 1.3E-05 52.5 9.4 86 1012-1107 3-94 (266)
142 PRK15059 tartronate semialdehy 92.3 0.6 1.3E-05 53.7 9.5 106 1012-1127 3-118 (292)
143 PRK04972 putative transporter; 92.1 1.5 3.3E-05 55.0 13.4 130 604-735 384-525 (558)
144 PRK08229 2-dehydropantoate 2-r 92.0 0.57 1.2E-05 54.5 9.2 103 1011-1117 4-117 (341)
145 PRK08017 oxidoreductase; Provi 92.0 0.27 5.9E-06 54.0 6.1 59 1010-1068 3-62 (256)
146 TIGR01109 Na_pump_decarbB sodi 91.9 31 0.00067 40.5 23.0 115 609-726 5-134 (354)
147 PRK09260 3-hydroxybutyryl-CoA 91.7 0.3 6.6E-06 55.7 6.3 74 1011-1086 3-94 (288)
148 PF10727 Rossmann-like: Rossma 91.7 0.21 4.6E-06 50.7 4.5 105 1008-1121 9-120 (127)
149 PRK05993 short chain dehydroge 91.7 0.3 6.4E-06 55.0 6.1 72 1010-1081 5-84 (277)
150 PRK05708 2-dehydropantoate 2-r 91.6 0.86 1.9E-05 52.7 9.9 110 1011-1122 4-120 (305)
151 PRK07502 cyclohexadienyl dehyd 91.5 0.49 1.1E-05 54.5 7.8 70 1010-1085 7-78 (307)
152 PF01408 GFO_IDH_MocA: Oxidore 91.4 1.9 4E-05 42.1 10.7 98 1011-1117 2-106 (120)
153 COG0499 SAM1 S-adenosylhomocys 91.4 0.24 5.3E-06 57.8 5.0 66 1010-1084 210-275 (420)
154 COG1648 CysG Siroheme synthase 91.4 0.49 1.1E-05 52.1 7.2 83 1010-1098 13-97 (210)
155 PRK13302 putative L-aspartate 91.3 0.86 1.9E-05 52.0 9.4 114 1010-1133 7-129 (271)
156 PRK07688 thiamine/molybdopteri 91.3 0.56 1.2E-05 55.2 8.0 88 1009-1098 24-141 (339)
157 cd05213 NAD_bind_Glutamyl_tRNA 91.0 0.65 1.4E-05 53.9 8.1 71 1010-1086 179-251 (311)
158 TIGR02169 SMC_prok_A chromosom 91.0 15 0.00034 49.6 22.2 49 268-316 294-342 (1164)
159 TIGR02680 conserved hypothetic 90.9 19 0.00041 50.2 23.0 122 110-243 705-832 (1353)
160 PRK15178 Vi polysaccharide exp 90.9 11 0.00024 45.9 18.3 56 176-246 215-270 (434)
161 PRK08507 prephenate dehydrogen 90.9 0.46 1E-05 53.9 6.6 68 1011-1086 2-71 (275)
162 cd01078 NAD_bind_H4MPT_DH NADP 90.8 0.57 1.2E-05 50.2 7.0 76 1010-1086 29-110 (194)
163 PRK00048 dihydrodipicolinate r 90.7 1.5 3.4E-05 49.5 10.6 120 1011-1141 3-129 (257)
164 COG2985 Predicted permease [Ge 90.7 4.1 8.9E-05 49.6 14.3 106 629-739 37-147 (544)
165 COG1893 ApbA Ketopantoate redu 90.7 1.1 2.3E-05 52.2 9.4 112 1011-1123 2-117 (307)
166 TIGR03026 NDP-sugDHase nucleot 90.7 0.54 1.2E-05 56.6 7.3 72 1011-1085 2-88 (411)
167 COG2084 MmsB 3-hydroxyisobutyr 90.7 1 2.3E-05 51.8 9.2 110 1011-1128 2-121 (286)
168 PRK06545 prephenate dehydrogen 90.7 0.49 1.1E-05 56.0 6.8 85 1011-1100 2-88 (359)
169 COG1196 Smc Chromosome segrega 90.6 12 0.00026 51.2 20.5 14 42-55 45-58 (1163)
170 PRK14620 NAD(P)H-dependent gly 90.4 0.53 1.1E-05 54.6 6.8 99 1011-1110 2-109 (326)
171 COG0287 TyrA Prephenate dehydr 90.4 0.57 1.2E-05 53.8 6.8 77 1009-1090 3-81 (279)
172 PLN02350 phosphogluconate dehy 90.4 1.6 3.4E-05 54.0 11.0 111 1011-1124 8-129 (493)
173 TIGR00946 2a69 he Auxin Efflux 90.3 4.4 9.6E-05 47.0 14.2 114 619-736 175-290 (321)
174 PRK01438 murD UDP-N-acetylmura 90.3 0.67 1.5E-05 56.6 7.9 71 1010-1087 17-92 (480)
175 PF01488 Shikimate_DH: Shikima 90.3 0.34 7.3E-06 49.4 4.4 74 1009-1086 12-88 (135)
176 PRK05225 ketol-acid reductoiso 90.2 0.28 6E-06 59.3 4.2 67 1010-1085 37-109 (487)
177 PF07991 IlvN: Acetohydroxy ac 90.1 0.18 4E-06 53.2 2.3 67 1010-1085 5-72 (165)
178 PRK10637 cysG siroheme synthas 90.1 0.77 1.7E-05 56.2 8.0 83 1010-1098 13-97 (457)
179 PRK06182 short chain dehydroge 90.1 0.55 1.2E-05 52.5 6.3 73 1010-1082 4-83 (273)
180 TIGR03185 DNA_S_dndD DNA sulfu 90.0 28 0.00061 44.7 22.2 55 261-315 421-475 (650)
181 TIGR02169 SMC_prok_A chromosom 89.9 54 0.0012 44.5 25.9 8 1032-1039 1096-1103(1164)
182 COG1196 Smc Chromosome segrega 89.8 13 0.00029 50.8 20.0 61 268-328 835-895 (1163)
183 TIGR00465 ilvC ketol-acid redu 89.8 1.1 2.3E-05 52.4 8.4 65 1011-1084 5-70 (314)
184 PLN00106 malate dehydrogenase 89.7 1.8 4E-05 50.7 10.4 136 1010-1147 19-183 (323)
185 PRK12491 pyrroline-5-carboxyla 89.7 2.6 5.6E-05 48.2 11.4 97 1011-1117 4-106 (272)
186 TIGR03466 HpnA hopanoid-associ 89.7 0.42 9E-06 54.4 5.1 70 1011-1081 2-72 (328)
187 PRK06129 3-hydroxyacyl-CoA deh 89.5 1.8 3.8E-05 50.1 10.0 98 1011-1109 4-119 (308)
188 PRK03369 murD UDP-N-acetylmura 89.1 0.92 2E-05 55.9 7.7 73 1010-1088 13-85 (488)
189 cd01483 E1_enzyme_family Super 89.0 1.1 2.4E-05 45.6 7.1 86 1011-1098 1-114 (143)
190 PRK14618 NAD(P)H-dependent gly 89.0 1.5 3.2E-05 51.0 9.0 93 1011-1108 6-105 (328)
191 PRK11880 pyrroline-5-carboxyla 88.9 1.7 3.7E-05 48.9 9.1 66 1011-1084 4-73 (267)
192 TIGR02356 adenyl_thiF thiazole 88.8 1.5 3.3E-05 47.8 8.3 88 1009-1098 21-136 (202)
193 PRK06249 2-dehydropantoate 2-r 88.8 2.9 6.2E-05 48.5 11.1 105 1011-1118 7-117 (313)
194 TIGR02354 thiF_fam2 thiamine b 88.8 2.2 4.8E-05 46.6 9.6 33 1009-1041 21-54 (200)
195 TIGR01763 MalateDH_bact malate 88.8 2.3 4.9E-05 49.4 10.2 131 1011-1148 3-164 (305)
196 COG2431 Predicted membrane pro 88.7 1.9 4.1E-05 49.0 9.0 90 628-722 108-202 (297)
197 PLN02657 3,8-divinyl protochlo 88.6 1.6 3.4E-05 52.3 9.0 71 1011-1081 62-144 (390)
198 PRK06953 short chain dehydroge 88.6 1.2 2.7E-05 48.1 7.5 71 1012-1082 4-79 (222)
199 PRK15477 oxaloacetate decarbox 88.5 62 0.0013 38.7 22.8 66 662-727 138-206 (433)
200 PF03616 Glt_symporter: Sodium 88.5 15 0.00032 44.1 16.9 104 625-728 246-356 (368)
201 PF02826 2-Hacid_dh_C: D-isome 88.5 0.66 1.4E-05 49.4 5.2 91 1009-1108 36-128 (178)
202 PRK09291 short chain dehydroge 88.2 1.1 2.5E-05 49.1 7.0 72 1011-1082 4-82 (257)
203 PRK15057 UDP-glucose 6-dehydro 88.1 2.5 5.4E-05 50.8 10.3 70 1012-1084 3-84 (388)
204 PF00072 Response_reg: Respons 88.1 4 8.8E-05 38.5 9.9 95 1035-1129 1-102 (112)
205 COG4651 RosB Kef-type K+ trans 88.0 3.7 8.1E-05 47.2 10.8 116 828-943 14-130 (408)
206 PRK08655 prephenate dehydrogen 88.0 2.5 5.4E-05 51.6 10.3 90 1011-1109 2-93 (437)
207 PF05982 DUF897: Domain of unk 88.0 15 0.00033 43.0 15.9 197 513-766 121-322 (327)
208 PRK15476 oxaloacetate decarbox 88.0 67 0.0015 38.4 22.8 66 662-727 138-206 (433)
209 PLN02256 arogenate dehydrogena 87.9 1.5 3.3E-05 50.9 8.0 90 1010-1109 37-128 (304)
210 PF06008 Laminin_I: Laminin Do 87.9 34 0.00074 38.9 18.7 103 153-255 43-176 (264)
211 PRK12460 2-keto-3-deoxyglucona 87.9 4 8.6E-05 47.5 11.2 96 629-728 169-266 (312)
212 PF00261 Tropomyosin: Tropomyo 87.7 26 0.00057 39.2 17.4 168 150-325 59-226 (237)
213 PRK15116 sulfur acceptor prote 87.7 2.9 6.2E-05 47.9 9.9 94 1009-1127 30-128 (268)
214 TIGR03025 EPS_sugtrans exopoly 87.7 6.7 0.00015 47.7 13.8 92 1009-1105 125-222 (445)
215 COG5374 Uncharacterized conser 87.5 1.1 2.4E-05 47.7 5.8 51 274-324 142-192 (192)
216 PF01210 NAD_Gly3P_dh_N: NAD-d 87.5 1.2 2.5E-05 46.6 6.2 69 1012-1086 2-82 (157)
217 PF00038 Filament: Intermediat 87.5 11 0.00024 43.6 14.7 154 150-310 98-251 (312)
218 PRK13403 ketol-acid reductoiso 87.4 2 4.4E-05 50.3 8.5 68 1010-1086 17-84 (335)
219 TIGR02680 conserved hypothetic 87.4 84 0.0018 44.0 25.2 37 270-306 349-385 (1353)
220 PRK01710 murD UDP-N-acetylmura 87.4 1.5 3.2E-05 53.6 7.9 86 1010-1104 15-105 (458)
221 PRK07680 late competence prote 87.4 3 6.5E-05 47.3 9.9 97 1012-1118 3-106 (273)
222 PRK07326 short chain dehydroge 87.3 1 2.2E-05 48.8 5.9 72 1010-1081 7-90 (237)
223 PLN02712 arogenate dehydrogena 87.2 3.3 7.1E-05 53.2 11.1 106 1009-1124 369-481 (667)
224 PRK15475 oxaloacetate decarbox 87.2 74 0.0016 38.1 22.8 66 662-727 138-206 (433)
225 cd05292 LDH_2 A subgroup of L- 87.2 1.3 2.9E-05 51.3 7.1 133 1011-1150 2-164 (308)
226 PRK00141 murD UDP-N-acetylmura 87.0 1.8 3.8E-05 53.2 8.4 73 1009-1087 15-88 (473)
227 PRK06130 3-hydroxybutyryl-CoA 87.0 2.8 6.2E-05 48.3 9.6 74 1011-1085 6-91 (311)
228 PLN02427 UDP-apiose/xylose syn 86.9 1 2.2E-05 53.3 6.1 70 1011-1081 16-94 (386)
229 COG1086 Predicted nucleoside-d 86.9 8.5 0.00019 48.0 13.8 76 1007-1087 114-191 (588)
230 PF00899 ThiF: ThiF family; I 86.7 2.8 6.2E-05 42.3 8.4 93 1010-1126 3-98 (135)
231 PF05701 WEMBL: Weak chloropla 86.7 46 0.00099 41.8 20.4 56 282-345 372-427 (522)
232 PF03547 Mem_trans: Membrane t 86.6 76 0.0016 37.6 25.0 132 845-979 244-384 (385)
233 COG3180 AbrB Putative ammonia 86.5 15 0.00032 43.6 14.9 146 829-982 15-166 (352)
234 PRK08293 3-hydroxybutyryl-CoA 86.5 2.5 5.5E-05 48.3 8.7 39 1011-1049 5-43 (287)
235 PTZ00117 malate dehydrogenase; 86.4 8.1 0.00018 45.2 13.0 132 1010-1148 6-168 (319)
236 PLN02695 GDP-D-mannose-3',5'-e 86.4 2.3 4.9E-05 50.4 8.6 72 1009-1081 21-93 (370)
237 TIGR00783 ccs citrate carrier 86.4 7.5 0.00016 46.0 12.5 108 613-722 191-306 (347)
238 PF13478 XdhC_C: XdhC Rossmann 86.4 0.51 1.1E-05 48.5 2.7 93 1012-1112 1-93 (136)
239 PRK05086 malate dehydrogenase; 86.3 4.9 0.00011 46.9 11.1 132 1011-1147 2-166 (312)
240 PRK05693 short chain dehydroge 86.3 1.2 2.7E-05 49.7 6.1 72 1011-1082 3-81 (274)
241 PRK00066 ldh L-lactate dehydro 86.3 4.9 0.00011 46.9 11.1 132 1010-1149 7-169 (315)
242 COG1179 Dinucleotide-utilizing 86.3 1.2 2.7E-05 49.8 5.7 109 1009-1140 30-143 (263)
243 cd01487 E1_ThiF_like E1_ThiF_l 86.2 2.6 5.7E-05 44.9 8.1 92 1011-1127 1-95 (174)
244 PLN03209 translocon at the inn 86.2 4.1 9E-05 51.2 10.9 73 1010-1083 81-169 (576)
245 PRK09424 pntA NAD(P) transhydr 85.9 3 6.5E-05 51.8 9.5 100 1009-1108 165-286 (509)
246 PLN02353 probable UDP-glucose 85.9 3 6.5E-05 51.4 9.4 72 1011-1084 3-89 (473)
247 PRK02705 murD UDP-N-acetylmura 85.7 2.1 4.4E-05 52.1 8.0 85 1011-1097 2-91 (459)
248 PRK06019 phosphoribosylaminoim 85.7 1.2 2.6E-05 52.9 5.8 107 1011-1122 4-114 (372)
249 PLN02896 cinnamyl-alcohol dehy 85.7 1.5 3.2E-05 51.3 6.5 71 1010-1081 11-87 (353)
250 PRK05808 3-hydroxybutyryl-CoA 85.7 4.8 0.0001 45.8 10.5 36 1011-1046 5-40 (282)
251 PRK13304 L-aspartate dehydroge 85.5 5.8 0.00013 45.1 10.9 110 1011-1131 3-124 (265)
252 KOG1298 Squalene monooxygenase 85.5 1.3 2.8E-05 52.5 5.6 38 1008-1045 44-84 (509)
253 COG1346 LrgB Putative effector 85.5 38 0.00082 38.0 16.5 163 790-984 3-172 (230)
254 PRK06035 3-hydroxyacyl-CoA deh 85.4 1.3 2.9E-05 50.6 5.8 39 1010-1048 4-42 (291)
255 cd01492 Aos1_SUMO Ubiquitin ac 85.0 5.2 0.00011 43.5 9.8 94 1009-1127 21-117 (197)
256 PRK05884 short chain dehydroge 85.0 1.5 3.2E-05 48.0 5.6 69 1012-1080 3-76 (223)
257 PRK09414 glutamate dehydrogena 85.0 3.2 6.9E-05 50.7 8.9 108 1010-1123 233-363 (445)
258 PF12128 DUF3584: Protein of u 85.0 1.1E+02 0.0024 42.3 24.4 93 273-365 605-698 (1201)
259 PTZ00082 L-lactate dehydrogena 84.8 2.2 4.8E-05 49.9 7.3 132 1010-1148 7-174 (321)
260 TIGR00561 pntA NAD(P) transhyd 84.8 2.5 5.5E-05 52.4 8.0 96 1009-1104 164-281 (511)
261 PRK13243 glyoxylate reductase; 84.7 1.3 2.9E-05 51.9 5.5 86 1009-1104 150-237 (333)
262 TIGR01142 purT phosphoribosylg 84.7 1.6 3.6E-05 51.4 6.3 108 1011-1122 1-115 (380)
263 PLN03139 formate dehydrogenase 84.7 3 6.5E-05 50.1 8.4 91 1010-1108 200-292 (386)
264 PRK06223 malate dehydrogenase; 84.6 2.2 4.7E-05 49.2 7.1 132 1011-1148 4-165 (307)
265 COG1004 Ugd Predicted UDP-gluc 84.6 4.3 9.4E-05 48.5 9.5 72 1011-1084 2-87 (414)
266 PF05276 SH3BP5: SH3 domain-bi 84.5 13 0.00027 42.1 12.6 154 152-319 18-172 (239)
267 PRK06101 short chain dehydroge 84.4 1.7 3.6E-05 47.7 5.8 59 1011-1069 3-64 (240)
268 PRK06949 short chain dehydroge 84.4 1.7 3.7E-05 47.7 5.9 73 1010-1082 10-95 (258)
269 PRK06914 short chain dehydroge 84.3 1.6 3.4E-05 48.9 5.6 73 1010-1082 4-90 (280)
270 PRK09903 putative transporter 84.3 89 0.0019 36.3 31.8 132 846-982 174-309 (314)
271 PLN02545 3-hydroxybutyryl-CoA 84.3 5.7 0.00012 45.5 10.3 37 1011-1047 6-42 (295)
272 PLN02650 dihydroflavonol-4-red 84.3 1.3 2.7E-05 51.7 5.0 71 1010-1081 6-85 (351)
273 TIGR01915 npdG NADPH-dependent 84.3 1.9 4.1E-05 47.4 6.1 67 1012-1085 3-80 (219)
274 PRK07679 pyrroline-5-carboxyla 84.3 7.1 0.00015 44.5 11.0 67 1011-1085 5-77 (279)
275 PRK07060 short chain dehydroge 84.1 1.8 3.9E-05 47.1 5.9 73 1010-1082 10-86 (245)
276 PRK08219 short chain dehydroge 84.0 2.1 4.6E-05 45.9 6.3 71 1011-1082 5-80 (227)
277 COG1064 AdhP Zn-dependent alco 84.0 3.7 8.1E-05 48.4 8.6 72 1009-1082 167-238 (339)
278 PRK08223 hypothetical protein; 83.9 4.3 9.4E-05 46.9 9.0 115 1009-1147 27-147 (287)
279 PRK07819 3-hydroxybutyryl-CoA 83.9 6.3 0.00014 45.3 10.4 37 1011-1047 7-43 (286)
280 PLN02712 arogenate dehydrogena 83.8 4.2 9.2E-05 52.2 9.8 94 1008-1111 51-146 (667)
281 COG0786 GltS Na+/glutamate sym 83.8 15 0.00033 44.0 13.4 118 611-728 232-357 (404)
282 PRK07454 short chain dehydroge 83.8 1.8 3.9E-05 47.2 5.7 72 1011-1082 8-92 (241)
283 cd00755 YgdL_like Family of ac 83.8 7.6 0.00016 43.5 10.6 109 1009-1140 11-124 (231)
284 TIGR01035 hemA glutamyl-tRNA r 83.6 7.9 0.00017 46.9 11.5 71 1010-1086 181-253 (417)
285 PLN02858 fructose-bisphosphate 83.5 5.4 0.00012 55.2 11.1 74 1009-1090 324-397 (1378)
286 PF01262 AlaDh_PNT_C: Alanine 83.5 1.1 2.4E-05 47.3 3.7 96 1009-1105 20-136 (168)
287 PRK06482 short chain dehydroge 83.4 1.8 4E-05 48.3 5.7 72 1010-1081 3-84 (276)
288 PLN02602 lactate dehydrogenase 83.4 9.1 0.0002 45.5 11.6 135 1010-1151 38-203 (350)
289 PF00056 Ldh_1_N: lactate/mala 83.4 5.5 0.00012 41.0 8.7 93 1011-1110 2-120 (141)
290 PRK07574 formate dehydrogenase 83.3 3.9 8.4E-05 49.1 8.6 88 1010-1105 193-282 (385)
291 PRK06476 pyrroline-5-carboxyla 83.2 5.1 0.00011 45.0 9.1 65 1011-1083 2-71 (258)
292 PF02737 3HCDH_N: 3-hydroxyacy 83.2 1.1 2.4E-05 48.0 3.6 104 1011-1116 1-122 (180)
293 KOG1370 S-adenosylhomocysteine 83.2 2.3 5E-05 48.9 6.2 77 1010-1097 215-291 (434)
294 PRK07530 3-hydroxybutyryl-CoA 83.1 6.8 0.00015 44.9 10.2 39 1010-1048 5-43 (292)
295 PHA02562 46 endonuclease subun 83.1 1.3E+02 0.0027 37.7 22.2 29 217-245 254-282 (562)
296 PRK07024 short chain dehydroge 83.0 1.9 4E-05 47.8 5.5 72 1010-1081 3-86 (257)
297 PRK00045 hemA glutamyl-tRNA re 83.0 2 4.2E-05 52.1 6.1 72 1010-1087 183-256 (423)
298 PRK12480 D-lactate dehydrogena 82.8 3.2 6.8E-05 48.8 7.5 83 1011-1105 148-232 (330)
299 PRK08264 short chain dehydroge 82.8 2.1 4.5E-05 46.5 5.7 73 1010-1083 7-83 (238)
300 COG0025 NhaP NhaP-type Na+/H+ 82.8 16 0.00035 44.5 13.8 74 875-948 64-139 (429)
301 PLN00016 RNA-binding protein; 82.8 3.2 6.8E-05 49.2 7.6 89 1010-1100 53-158 (378)
302 KOG0996 Structural maintenance 82.8 35 0.00075 45.8 16.9 43 666-708 1175-1217(1293)
303 cd00757 ThiF_MoeB_HesA_family 82.7 4.2 9.1E-05 45.1 8.1 94 1009-1126 21-117 (228)
304 COG5420 Uncharacterized conser 82.7 3.6 7.9E-05 36.7 5.8 52 295-346 5-62 (71)
305 PRK08644 thiamine biosynthesis 82.7 7.8 0.00017 42.7 10.1 87 1009-1097 28-141 (212)
306 PRK06928 pyrroline-5-carboxyla 82.6 7.6 0.00016 44.3 10.3 88 1011-1105 3-96 (277)
307 PTZ00325 malate dehydrogenase; 82.5 12 0.00026 44.0 12.0 99 1010-1110 9-127 (321)
308 PF04012 PspA_IM30: PspA/IM30 82.4 60 0.0013 35.8 16.9 47 150-196 32-78 (221)
309 TIGR01181 dTDP_gluc_dehyt dTDP 82.3 4.6 0.0001 45.5 8.4 70 1012-1082 2-82 (317)
310 PRK12439 NAD(P)H-dependent gly 82.3 3 6.6E-05 49.0 7.1 99 1009-1110 7-114 (341)
311 PLN02686 cinnamoyl-CoA reducta 82.1 2.2 4.8E-05 50.4 6.0 69 1009-1078 53-133 (367)
312 PF00999 Na_H_Exchanger: Sodiu 82.1 0.35 7.5E-06 57.0 -0.7 111 832-942 8-124 (380)
313 PRK11199 tyrA bifunctional cho 82.1 2.6 5.7E-05 50.3 6.6 34 1009-1042 98-132 (374)
314 PRK11908 NAD-dependent epimera 82.1 2 4.3E-05 50.0 5.5 67 1011-1078 3-73 (347)
315 PRK07074 short chain dehydroge 82.0 2.9 6.4E-05 46.0 6.6 72 1011-1082 4-86 (257)
316 PLN02989 cinnamyl-alcohol dehy 82.0 2.4 5.2E-05 48.6 6.1 72 1010-1082 6-86 (325)
317 TIGR02355 moeB molybdopterin s 82.0 7.9 0.00017 43.5 10.0 114 1009-1146 24-141 (240)
318 PF06008 Laminin_I: Laminin Do 81.9 99 0.0022 35.2 22.9 20 272-291 150-169 (264)
319 KOG1650 Predicted K+/H+-antipo 81.9 8.6 0.00019 50.3 11.5 86 655-742 310-397 (769)
320 PF05701 WEMBL: Weak chloropla 81.9 83 0.0018 39.5 19.7 52 265-316 278-329 (522)
321 PF13514 AAA_27: AAA domain 81.8 97 0.0021 42.5 21.8 27 158-184 746-772 (1111)
322 PLN02662 cinnamyl-alcohol dehy 81.7 1.9 4.2E-05 49.1 5.1 70 1011-1081 6-84 (322)
323 PRK08265 short chain dehydroge 81.7 2.2 4.8E-05 47.4 5.5 72 1010-1081 7-88 (261)
324 cd02067 B12-binding B12 bindin 81.7 6.5 0.00014 38.8 8.2 68 1064-1131 41-113 (119)
325 PRK09072 short chain dehydroge 81.6 2.2 4.7E-05 47.4 5.4 73 1010-1082 6-89 (263)
326 cd01485 E1-1_like Ubiquitin ac 81.6 7.4 0.00016 42.4 9.3 98 1009-1128 19-121 (198)
327 TIGR00036 dapB dihydrodipicoli 81.4 5.5 0.00012 45.4 8.6 121 1011-1142 3-140 (266)
328 TIGR03023 WcaJ_sugtrans Undeca 81.4 20 0.00044 43.6 14.0 91 1009-1104 128-224 (451)
329 TIGR01318 gltD_gamma_fam gluta 81.3 2.2 4.8E-05 52.3 5.8 77 1008-1085 140-238 (467)
330 PRK10698 phage shock protein P 81.3 72 0.0016 35.6 17.0 30 151-180 34-63 (222)
331 PRK06924 short chain dehydroge 81.3 2.5 5.5E-05 46.3 5.7 58 1011-1068 3-65 (251)
332 PRK10538 malonic semialdehyde 81.1 2.4 5.3E-05 46.6 5.5 70 1012-1081 3-82 (248)
333 COG0240 GpsA Glycerol-3-phosph 81.0 4.2 9.1E-05 47.7 7.5 74 1011-1084 3-82 (329)
334 PRK08267 short chain dehydroge 81.0 2.6 5.6E-05 46.6 5.7 72 1011-1082 3-86 (260)
335 PRK08773 2-octaprenyl-3-methyl 80.8 1.3 2.8E-05 52.4 3.4 62 1010-1071 7-68 (392)
336 PRK06179 short chain dehydroge 80.8 2.1 4.6E-05 47.5 5.0 70 1011-1082 6-82 (270)
337 PRK15469 ghrA bifunctional gly 80.7 3.4 7.3E-05 48.3 6.7 87 1010-1106 137-225 (312)
338 PRK05479 ketol-acid reductoiso 80.7 4.3 9.4E-05 47.8 7.6 67 1011-1086 19-86 (330)
339 COG0702 Predicted nucleoside-d 80.6 16 0.00034 40.3 11.8 66 1015-1081 7-72 (275)
340 PLN02928 oxidoreductase family 80.4 2.2 4.8E-05 50.4 5.2 96 1010-1106 160-261 (347)
341 COG5505 Predicted integral mem 80.4 1.3E+02 0.0027 35.4 31.4 101 874-981 275-375 (384)
342 PRK00421 murC UDP-N-acetylmura 80.4 3.3 7.1E-05 50.6 6.8 72 1010-1088 8-81 (461)
343 PRK06180 short chain dehydroge 80.4 2.7 5.9E-05 47.2 5.7 72 1011-1082 6-87 (277)
344 COG1842 PspA Phage shock prote 80.4 66 0.0014 36.1 16.2 60 150-221 33-92 (225)
345 TIGR01082 murC UDP-N-acetylmur 80.3 3.4 7.3E-05 50.3 6.8 70 1011-1087 1-72 (448)
346 PRK07634 pyrroline-5-carboxyla 80.3 9.1 0.0002 42.3 9.7 97 1011-1117 6-108 (245)
347 cd01339 LDH-like_MDH L-lactate 80.3 23 0.0005 40.8 13.3 129 1012-1147 1-160 (300)
348 PRK06940 short chain dehydroge 80.3 2.4 5.2E-05 47.8 5.2 72 1009-1081 2-84 (275)
349 PRK11281 hypothetical protein; 80.1 29 0.00063 47.2 15.6 103 196-304 62-164 (1113)
350 PF03956 DUF340: Membrane prot 80.0 6.9 0.00015 42.6 8.3 125 848-981 2-136 (191)
351 cd00650 LDH_MDH_like NAD-depen 80.0 3.3 7.1E-05 46.8 6.1 128 1012-1147 1-163 (263)
352 PLN02583 cinnamoyl-CoA reducta 80.0 4.3 9.4E-05 46.3 7.2 70 1009-1079 6-84 (297)
353 PRK07231 fabG 3-ketoacyl-(acyl 79.9 2.8 6.1E-05 45.7 5.5 72 1011-1082 7-90 (251)
354 PRK06483 dihydromonapterin red 79.8 3.4 7.4E-05 44.9 6.1 72 1010-1081 3-82 (236)
355 PRK12939 short chain dehydroge 79.8 2.6 5.6E-05 45.9 5.1 73 1010-1082 8-93 (250)
356 PRK07774 short chain dehydroge 79.8 2.7 5.8E-05 46.0 5.2 73 1010-1082 7-92 (250)
357 PRK07067 sorbitol dehydrogenas 79.7 2.8 6.1E-05 46.2 5.4 71 1011-1081 8-88 (257)
358 PRK05565 fabG 3-ketoacyl-(acyl 79.7 2.7 5.8E-05 45.7 5.2 72 1010-1081 6-91 (247)
359 cd01080 NAD_bind_m-THF_DH_Cycl 79.5 2.3 4.9E-05 45.4 4.4 55 1009-1085 44-99 (168)
360 PF12128 DUF3584: Protein of u 79.5 1.1E+02 0.0025 42.2 21.4 27 149-175 314-340 (1201)
361 PRK04288 antiholin-like protei 79.5 87 0.0019 35.4 16.7 158 795-984 10-175 (232)
362 PRK14806 bifunctional cyclohex 79.4 4.9 0.00011 52.0 8.2 84 1010-1100 4-90 (735)
363 PRK07877 hypothetical protein; 79.4 8.4 0.00018 49.9 10.1 111 1009-1147 107-224 (722)
364 PRK02318 mannitol-1-phosphate 79.4 6.8 0.00015 46.9 8.8 43 1011-1053 2-45 (381)
365 PRK06194 hypothetical protein; 79.2 2.5 5.5E-05 47.4 5.0 73 1010-1082 7-92 (287)
366 PRK12548 shikimate 5-dehydroge 79.2 5.2 0.00011 46.1 7.5 73 1010-1083 127-209 (289)
367 KOG0161 Myosin class II heavy 79.2 1.2E+02 0.0025 43.8 21.0 162 149-326 1523-1697(1930)
368 PF01113 DapB_N: Dihydrodipico 79.2 4.1 8.9E-05 41.0 5.9 100 1011-1121 2-114 (124)
369 COG2910 Putative NADH-flavin r 79.1 2.9 6.4E-05 45.2 5.0 70 1012-1084 4-73 (211)
370 COG0026 PurK Phosphoribosylami 79.1 2.9 6.3E-05 49.5 5.4 107 1011-1122 3-113 (375)
371 PRK02472 murD UDP-N-acetylmura 79.0 5.2 0.00011 48.4 7.9 82 1010-1097 6-91 (447)
372 PF03390 2HCT: 2-hydroxycarbox 79.0 25 0.00054 42.7 13.2 110 611-722 256-373 (414)
373 PRK15181 Vi polysaccharide bio 78.9 3 6.6E-05 48.7 5.7 70 1011-1081 17-98 (348)
374 PLN00203 glutamyl-tRNA reducta 78.9 2.5 5.3E-05 52.7 5.1 72 1010-1085 267-341 (519)
375 smart00859 Semialdhyde_dh Semi 78.8 3.8 8.2E-05 40.6 5.5 86 1012-1101 2-93 (122)
376 PRK01130 N-acetylmannosamine-6 78.8 35 0.00076 37.5 13.6 101 1021-1126 25-145 (221)
377 PLN02735 carbamoyl-phosphate s 78.7 1.9 4.2E-05 58.2 4.4 80 1008-1087 573-663 (1102)
378 cd05294 LDH-like_MDH_nadp A la 78.7 31 0.00066 40.3 13.7 131 1011-1147 2-166 (309)
379 PRK03803 murD UDP-N-acetylmura 78.6 5.1 0.00011 48.7 7.6 74 1009-1088 6-83 (448)
380 PLN02858 fructose-bisphosphate 78.6 8.9 0.00019 53.2 10.6 111 1010-1128 5-126 (1378)
381 PRK00258 aroE shikimate 5-dehy 78.6 9.1 0.0002 43.7 9.2 109 1010-1125 124-241 (278)
382 COG2085 Predicted dinucleotide 78.6 6.5 0.00014 43.4 7.6 94 1011-1112 3-97 (211)
383 PTZ00314 inosine-5'-monophosph 78.5 13 0.00028 46.3 11.1 117 1014-1132 235-378 (495)
384 TIGR01161 purK phosphoribosyla 78.5 3.4 7.3E-05 48.6 5.9 106 1012-1122 2-112 (352)
385 PRK12829 short chain dehydroge 78.5 3.2 6.9E-05 45.7 5.4 73 1010-1082 12-95 (264)
386 TIGR01472 gmd GDP-mannose 4,6- 78.5 3.4 7.4E-05 48.0 5.9 71 1011-1081 2-86 (343)
387 PRK12429 3-hydroxybutyrate deh 78.4 3.1 6.8E-05 45.5 5.3 73 1010-1082 5-90 (258)
388 cd00300 LDH_like L-lactate deh 78.4 15 0.00032 42.6 10.9 93 1012-1111 1-118 (300)
389 PRK07825 short chain dehydroge 78.3 3.5 7.6E-05 46.0 5.7 71 1011-1081 7-86 (273)
390 TIGR03589 PseB UDP-N-acetylglu 78.2 3.7 8E-05 47.6 6.0 70 1011-1081 6-82 (324)
391 PRK12815 carB carbamoyl phosph 78.1 4 8.7E-05 55.2 7.1 112 1010-1122 8-142 (1068)
392 PRK08217 fabG 3-ketoacyl-(acyl 78.1 3.3 7.2E-05 45.1 5.3 73 1010-1082 6-91 (253)
393 PRK02006 murD UDP-N-acetylmura 78.0 4.9 0.00011 49.6 7.3 69 1010-1084 8-80 (498)
394 PRK14619 NAD(P)H-dependent gly 77.9 13 0.00029 42.9 10.5 33 1011-1043 6-38 (308)
395 PRK15182 Vi polysaccharide bio 77.9 6.8 0.00015 47.7 8.3 70 1011-1084 8-87 (425)
396 PRK07523 gluconate 5-dehydroge 77.9 3.1 6.8E-05 45.8 5.1 73 1010-1082 11-96 (255)
397 PRK04308 murD UDP-N-acetylmura 77.8 5.1 0.00011 48.6 7.3 73 1010-1088 6-82 (445)
398 TIGR01327 PGDH D-3-phosphoglyc 77.8 3.2 7E-05 51.8 5.7 90 1010-1108 139-230 (525)
399 cd05293 LDH_1 A subgroup of L- 77.8 13 0.00028 43.5 10.3 136 1009-1151 3-169 (312)
400 PRK12809 putative oxidoreducta 77.8 3.3 7.1E-05 52.9 5.9 76 1008-1084 309-406 (639)
401 PRK12814 putative NADPH-depend 77.8 2.9 6.3E-05 53.5 5.4 75 1009-1084 193-289 (652)
402 PRK06057 short chain dehydroge 77.7 4.3 9.4E-05 44.8 6.2 72 1010-1081 8-87 (255)
403 PRK05866 short chain dehydroge 77.7 4.6 9.9E-05 46.2 6.5 72 1010-1081 41-125 (293)
404 KOG1201 Hydroxysteroid 17-beta 77.7 18 0.00039 42.0 11.0 85 1007-1107 35-121 (300)
405 PRK04778 septation ring format 77.6 1.7E+02 0.0036 37.3 20.6 158 190-366 278-439 (569)
406 PRK05597 molybdopterin biosynt 77.5 9.8 0.00021 45.2 9.4 114 1009-1146 28-145 (355)
407 PRK12320 hypothetical protein; 77.5 7.4 0.00016 50.2 8.8 68 1011-1083 2-70 (699)
408 PRK07608 ubiquinone biosynthes 77.5 2.1 4.6E-05 50.3 3.8 65 1009-1073 5-69 (388)
409 cd00704 MDH Malate dehydrogena 77.5 11 0.00023 44.4 9.5 132 1011-1150 2-174 (323)
410 PRK08177 short chain dehydroge 77.4 3.6 7.9E-05 44.5 5.3 71 1011-1081 3-79 (225)
411 KOG3826 Na+/H+ antiporter [Ino 77.3 2 4.2E-05 47.8 3.1 131 605-735 101-238 (252)
412 PRK08268 3-hydroxy-acyl-CoA de 77.2 11 0.00023 47.1 9.9 75 1010-1091 8-104 (507)
413 PRK13581 D-3-phosphoglycerate 77.1 5.2 0.00011 50.0 7.2 88 1010-1107 141-230 (526)
414 PRK06184 hypothetical protein; 77.1 1.3 2.7E-05 54.6 1.8 35 1010-1044 4-38 (502)
415 TIGR01771 L-LDH-NAD L-lactate 77.0 5.9 0.00013 45.9 7.2 90 1014-1111 1-116 (299)
416 COG0111 SerA Phosphoglycerate 76.9 7.2 0.00016 45.9 7.9 87 1007-1103 139-229 (324)
417 COG0654 UbiH 2-polyprenyl-6-me 76.9 2.4 5.2E-05 50.4 4.1 58 1010-1071 3-60 (387)
418 PRK09880 L-idonate 5-dehydroge 76.7 8.1 0.00018 44.9 8.3 73 1010-1084 171-246 (343)
419 PRK06436 glycerate dehydrogena 76.7 5.6 0.00012 46.3 6.9 85 1007-1104 119-206 (303)
420 PRK07831 short chain dehydroge 76.7 4 8.6E-05 45.3 5.5 73 1010-1082 18-106 (262)
421 PRK09186 flagellin modificatio 76.6 4.3 9.4E-05 44.5 5.7 72 1010-1081 5-91 (256)
422 PRK08339 short chain dehydroge 76.6 3.9 8.5E-05 45.7 5.4 71 1011-1081 10-93 (263)
423 PRK06200 2,3-dihydroxy-2,3-dih 76.5 4.4 9.5E-05 45.0 5.8 71 1011-1081 8-88 (263)
424 PF00289 CPSase_L_chain: Carba 76.5 2.6 5.5E-05 41.9 3.5 38 1010-1047 3-40 (110)
425 TIGR02977 phageshock_pspA phag 76.4 1.3E+02 0.0028 33.4 20.1 49 150-198 33-81 (219)
426 PF02310 B12-binding: B12 bind 76.3 11 0.00023 36.9 7.9 90 1022-1129 18-113 (121)
427 TIGR02279 PaaC-3OHAcCoADH 3-hy 76.3 3.4 7.3E-05 51.4 5.2 38 1011-1048 7-44 (503)
428 cd08230 glucose_DH Glucose deh 76.3 9.9 0.00021 44.4 8.9 73 1010-1084 174-249 (355)
429 PRK06181 short chain dehydroge 76.2 3.7 8E-05 45.4 5.1 71 1011-1081 3-86 (263)
430 PF12718 Tropomyosin_1: Tropom 76.2 22 0.00049 37.0 10.4 61 269-329 15-75 (143)
431 PRK07814 short chain dehydroge 76.2 4 8.6E-05 45.4 5.4 71 1011-1081 12-95 (263)
432 PLN02214 cinnamoyl-CoA reducta 76.1 4.9 0.00011 46.9 6.3 72 1010-1082 11-90 (342)
433 COG0679 Predicted permeases [G 76.1 46 0.001 38.8 14.2 111 623-736 165-277 (311)
434 PF01073 3Beta_HSD: 3-beta hyd 76.1 3.7 8.1E-05 46.9 5.2 66 1014-1080 3-73 (280)
435 PRK09903 putative transporter 76.1 32 0.0007 39.9 12.9 108 625-736 172-280 (314)
436 PRK12826 3-ketoacyl-(acyl-carr 75.9 4.8 0.0001 43.8 5.8 71 1011-1081 8-91 (251)
437 PRK08013 oxidoreductase; Provi 75.9 2.3 5E-05 50.7 3.6 62 1011-1072 5-67 (400)
438 cd01337 MDH_glyoxysomal_mitoch 75.9 24 0.00052 41.3 11.7 132 1011-1147 2-165 (310)
439 PRK08850 2-octaprenyl-6-methox 75.8 1.9 4E-05 51.5 2.8 32 1010-1041 5-36 (405)
440 COG0373 HemA Glutamyl-tRNA red 75.8 15 0.00033 44.5 10.3 72 1010-1087 179-252 (414)
441 PRK02224 chromosome segregatio 75.7 1.6E+02 0.0034 39.2 20.7 207 150-359 484-695 (880)
442 PRK05867 short chain dehydroge 75.7 3.9 8.5E-05 45.0 5.1 72 1010-1081 10-94 (253)
443 PRK12769 putative oxidoreducta 75.7 2.5 5.4E-05 54.1 4.0 74 1009-1083 327-422 (654)
444 PRK07066 3-hydroxybutyryl-CoA 75.7 8.8 0.00019 45.1 8.1 105 1010-1116 8-127 (321)
445 PRK06138 short chain dehydroge 75.6 3.9 8.5E-05 44.7 5.0 72 1011-1082 7-90 (252)
446 cd01484 E1-2_like Ubiquitin ac 75.5 10 0.00022 42.7 8.2 114 1011-1147 1-119 (234)
447 COG0686 Ald Alanine dehydrogen 75.5 10 0.00022 44.3 8.2 99 1007-1107 166-268 (371)
448 PRK08213 gluconate 5-dehydroge 75.5 4 8.6E-05 45.1 5.1 73 1010-1082 13-98 (259)
449 COG2242 CobL Precorrin-6B meth 75.4 20 0.00043 39.1 10.0 105 1014-1125 42-157 (187)
450 PRK06196 oxidoreductase; Provi 75.4 4.5 9.7E-05 46.5 5.7 72 1010-1081 27-107 (315)
451 PRK08591 acetyl-CoA carboxylas 75.4 5.8 0.00013 48.2 6.9 113 1010-1122 3-129 (451)
452 PRK07102 short chain dehydroge 75.4 3.7 8E-05 44.9 4.8 71 1011-1081 3-84 (243)
453 PRK07531 bifunctional 3-hydrox 75.3 7.9 0.00017 48.0 8.1 74 1011-1085 6-92 (495)
454 PRK06172 short chain dehydroge 75.3 4.2 9.2E-05 44.6 5.2 72 1010-1081 8-92 (253)
455 PRK13394 3-hydroxybutyrate deh 75.3 4.2 9.1E-05 44.7 5.2 72 1010-1081 8-92 (262)
456 PF00070 Pyr_redox: Pyridine n 75.2 2.4 5.2E-05 38.9 2.7 34 1011-1044 1-34 (80)
457 PRK05786 fabG 3-ketoacyl-(acyl 75.2 4.4 9.5E-05 43.9 5.3 73 1010-1082 6-90 (238)
458 PRK07878 molybdopterin biosynt 75.1 11 0.00023 45.5 8.9 114 1009-1146 42-159 (392)
459 TIGR01772 MDH_euk_gproteo mala 75.1 10 0.00023 44.3 8.5 132 1011-1146 1-163 (312)
460 PLN00198 anthocyanidin reducta 75.1 3.9 8.6E-05 47.3 5.1 70 1011-1081 11-88 (338)
461 cd05290 LDH_3 A subgroup of L- 75.1 21 0.00045 41.8 10.9 130 1011-1147 1-164 (307)
462 PF12777 MT: Microtubule-bindi 75.0 18 0.00039 42.8 10.6 94 270-366 10-103 (344)
463 PRK12936 3-ketoacyl-(acyl-carr 75.0 6.2 0.00013 42.8 6.4 73 1010-1082 7-89 (245)
464 PRK10124 putative UDP-glucose 75.0 46 0.001 41.1 14.4 92 1009-1108 143-240 (463)
465 PRK08125 bifunctional UDP-gluc 74.9 3.7 8.1E-05 52.5 5.3 69 1009-1078 315-387 (660)
466 PLN02477 glutamate dehydrogena 74.8 7.8 0.00017 47.0 7.6 105 1010-1123 207-330 (410)
467 PRK12828 short chain dehydroge 74.8 6.1 0.00013 42.6 6.2 71 1011-1081 9-90 (239)
468 PRK01581 speE spermidine synth 74.7 20 0.00042 43.0 10.6 97 1010-1110 152-271 (374)
469 PRK14573 bifunctional D-alanyl 74.7 5.9 0.00013 52.0 7.1 73 1010-1089 5-79 (809)
470 PF07888 CALCOCO1: Calcium bin 74.7 1.3E+02 0.0027 38.0 17.8 146 150-314 285-449 (546)
471 cd00381 IMPDH IMPDH: The catal 74.6 27 0.00058 41.1 11.8 115 1015-1129 89-228 (325)
472 TIGR03206 benzo_BadH 2-hydroxy 74.5 4.8 0.0001 43.9 5.4 72 1011-1082 5-89 (250)
473 TIGR00659 conserved hypothetic 74.5 1.2E+02 0.0027 34.0 16.2 89 891-983 80-168 (226)
474 PRK05294 carB carbamoyl phosph 74.4 3.5 7.5E-05 55.8 5.0 114 1008-1122 553-683 (1066)
475 PRK08849 2-octaprenyl-3-methyl 74.4 2.9 6.3E-05 49.5 3.9 62 1011-1072 5-67 (384)
476 TIGR03366 HpnZ_proposed putati 74.3 11 0.00024 42.6 8.4 75 1010-1084 122-198 (280)
477 PRK10476 multidrug resistance 74.3 31 0.00066 40.6 12.3 50 194-243 128-177 (346)
478 cd05313 NAD_bind_2_Glu_DH NAD( 74.3 14 0.0003 42.1 9.0 108 1010-1123 39-173 (254)
479 PRK12810 gltD glutamate syntha 74.3 4 8.6E-05 50.1 5.1 76 1008-1084 142-239 (471)
480 TIGR03319 YmdA_YtgF conserved 74.3 2.4E+02 0.0053 35.5 20.7 38 270-307 92-129 (514)
481 cd00452 KDPG_aldolase KDPG and 74.2 50 0.0011 35.6 12.9 128 1022-1155 19-162 (190)
482 PRK12704 phosphodiesterase; Pr 74.2 1.7E+02 0.0036 37.0 19.0 25 270-294 105-129 (520)
483 PRK05875 short chain dehydroge 74.2 4.7 0.0001 45.0 5.3 72 1010-1081 8-94 (276)
484 PRK05717 oxidoreductase; Valid 74.1 6.4 0.00014 43.5 6.3 71 1011-1081 12-92 (255)
485 PRK12833 acetyl-CoA carboxylas 74.1 6.1 0.00013 48.6 6.6 114 1010-1123 6-133 (467)
486 PRK12472 hypothetical protein; 74.0 61 0.0013 40.0 14.4 100 214-354 221-320 (508)
487 TIGR00634 recN DNA repair prot 74.0 91 0.002 39.5 17.0 17 227-243 275-291 (563)
488 PRK07890 short chain dehydroge 73.9 5.1 0.00011 44.0 5.4 71 1011-1081 7-90 (258)
489 PRK08309 short chain dehydroge 73.9 5.3 0.00012 42.8 5.4 58 1011-1068 2-64 (177)
490 PRK08605 D-lactate dehydrogena 73.9 3.4 7.4E-05 48.5 4.2 83 1011-1104 148-233 (332)
491 PRK06500 short chain dehydroge 73.8 5.6 0.00012 43.4 5.7 72 1010-1081 7-88 (249)
492 COG3524 KpsE Capsule polysacch 73.7 73 0.0016 37.1 14.1 64 167-245 142-206 (372)
493 PF03977 OAD_beta: Na+-transpo 73.7 63 0.0014 38.2 14.0 73 874-948 68-140 (360)
494 TIGR01087 murD UDP-N-acetylmur 73.7 7 0.00015 47.2 6.9 71 1011-1088 1-77 (433)
495 PRK09288 purT phosphoribosylgl 73.7 5.5 0.00012 47.3 6.0 73 1009-1083 12-85 (395)
496 PRK10711 hypothetical protein; 73.6 89 0.0019 35.3 14.8 88 892-983 82-169 (231)
497 PRK12779 putative bifunctional 73.6 5.1 0.00011 53.5 6.2 75 1009-1083 306-402 (944)
498 PRK12771 putative glutamate sy 73.6 3.8 8.3E-05 51.4 4.8 76 1008-1084 136-233 (564)
499 PRK09310 aroDE bifunctional 3- 73.5 21 0.00046 44.1 11.1 69 1010-1085 333-402 (477)
500 PRK08762 molybdopterin biosynt 73.4 8 0.00017 46.2 7.2 90 1009-1098 135-250 (376)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1e-79 Score=753.85 Aligned_cols=556 Identities=38% Similarity=0.599 Sum_probs=502.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhc
Q 000968 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~ 680 (1207)
.+++.+++++.++.+++++++|+ ++|+++|||++|+++||+++|++++.+.+..++++|++++||.+|+|+|++++|+.
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~ 83 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 57889999999999999999999 99999999999999999999999888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHH
Q 000968 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1207)
Q Consensus 681 ~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIv 760 (1207)
++.++.+|..++++++++++. +.+++|++|..++++|.+++.|||++++++|+|++.+++++|+.+++++++||+++++
T Consensus 84 ~~~~~~~g~~qv~~~~~~~~~-~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ 162 (621)
T PRK03562 84 RRSIFGGGALQMVACGGLLGL-FCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIP 162 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHH
Confidence 999999999999998875554 4456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 000968 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA 840 (1207)
Q Consensus 761 ll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae 840 (1207)
++++++.++.... ..+.. .++..+++.++++++++++++|+.+|+++|+.+.+++|.++..+++++++++++++
T Consensus 163 ll~l~~~l~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~ 236 (621)
T PRK03562 163 LVAMIPLLAASGA--STTLG----AFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLME 236 (621)
T ss_pred HHHHHHHHccCCC--ccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 9988877654211 11111 12223334455556667778999999999999888899999888999999999999
Q ss_pred HhcchHHHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 000968 841 RAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVG 920 (1207)
Q Consensus 841 ~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~ 920 (1207)
.+|+|+++|||+||+++++++++|+++++++||+++|+|+||+++||++|+..+..+|+.++.++++.+++|++++++.+
T Consensus 237 ~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~ 316 (621)
T PRK03562 237 EVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLA 316 (621)
T ss_pred HhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877776666667778899999999999
Q ss_pred HhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhhh-hhhhcccccccC
Q 000968 921 RLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIA-SRFEQHDVRSLL 999 (1207)
Q Consensus 921 ~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~~La-~rl~~~~~~~~~ 999 (1207)
+++|+++++++.+|+.|+|+|+|+++++..+.+.++++++.++++++++++||+++|++..+.+++. .|+....
T Consensus 317 ~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~~~~~~~----- 391 (621)
T PRK03562 317 RPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQSRTEEAR----- 391 (621)
T ss_pred HHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc-----
Confidence 9999999999999999999999999999999999999999999999999999999999988754443 3332111
Q ss_pred ccccccccccccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1000 PVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1000 ~~e~~~~~lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
.+...++.++|+||||||++|+.+++.|++.|+++++||.|+++++.+++.|+++++||++|+++|+++|+++|+.+|+
T Consensus 392 -~~~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 392 -EADEIDEQQPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred -cccccccccCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 1112234579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchhHHHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000968 1080 TLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRT 1159 (1207)
Q Consensus 1080 atddd~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~~lg~~~~ei~~~i~~~r~ 1159 (1207)
+++||+.|..++..+|++||+++|++|++|+++.++|+++|||+|+++++++++.++++++..+|.+++++.+.++.+|+
T Consensus 471 ~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~lg~~~~~~~~~~~~~r~ 550 (621)
T PRK03562 471 AIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLESLGLGPYEARERADRFRR 550 (621)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHhh
Q 000968 1160 RHLSELTELCQ 1170 (1207)
Q Consensus 1160 ~~~~~L~~~~~ 1170 (1207)
++++.++....
T Consensus 551 ~~~~~~~~~~~ 561 (621)
T PRK03562 551 HNLQMVEEMAP 561 (621)
T ss_pred HHHHHHHHHhh
Confidence 99999977644
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.7e-79 Score=750.47 Aligned_cols=560 Identities=36% Similarity=0.574 Sum_probs=503.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhH
Q 000968 597 NEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1207)
Q Consensus 597 ~~~~~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~ 676 (1207)
+++..++.++++++.++.+++++++|+ ++|+++|||++|+++||+++|++++.+.+..++++|++++||.+|+|+|+++
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~ 79 (601)
T PRK03659 1 MEGSDLLTAGVLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSK 79 (601)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 356778888999999999999999999 9999999999999999999999988888999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhH
Q 000968 677 LSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1207)
Q Consensus 677 Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi 756 (1207)
+|+.++.++.++..++++|+++++.+.+ ++|++|..++++|++++.|||++++++|+|++.+++++|+++++++++||+
T Consensus 80 l~~~~~~~~~~g~~~v~~t~~~~~~~~~-~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di 158 (601)
T PRK03659 80 LWQLRRSIFGVGAAQVLLSAAVLAGLLM-LTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDL 158 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHH
Confidence 9999999999999999999876666544 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 000968 757 AVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS 836 (1207)
Q Consensus 757 ~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a 836 (1207)
.+++++.+++.+..... + . ..+ .. ....++.+++++++++|+.+|+++|+.+.++++.+++.+++++++++
T Consensus 159 ~~i~ll~l~~~l~~~~~-~--~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a 229 (601)
T PRK03659 159 AVIPALALVPLLAGSAD-E--H-FDW-MK----IGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSA 229 (601)
T ss_pred HHHHHHHHHHHHhcCCC-c--c-hHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 99999988877653221 1 1 011 11 11223334455667889999999999988889999998899999999
Q ss_pred HHHHHhcchHHHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHH
Q 000968 837 LLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1207)
Q Consensus 837 ~Lae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v 916 (1207)
++++.+|+|+++|||+||+++++++++|+++++++||+++|+|+||+++||.+|+..+..+|+.++.++++.+++|++++
T Consensus 230 ~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~ 309 (601)
T PRK03659 230 LFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVL 309 (601)
T ss_pred HHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888777777778889999999
Q ss_pred HHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhh-hhhhhcccc
Q 000968 917 ALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLI-ASRFEQHDV 995 (1207)
Q Consensus 917 ~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~~L-a~rl~~~~~ 995 (1207)
++.++++|+++++++.+|++|+|+|+|+++++..+.+.|+++++.++.+++++++|++++|++.+...++ .+++.....
T Consensus 310 ~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~~~~~~~ 389 (601)
T PRK03659 310 YLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARRLNGPEE 389 (601)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543 333322111
Q ss_pred cccCccccccccccccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccC
Q 000968 996 RSLLPVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERAC 1075 (1207)
Q Consensus 996 ~~~~~~e~~~~~lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~ 1075 (1207)
. ......++.++|+||||||++|+.+++.|.++|++|++||.||++++.+++.|.++++||++|+++|+++|+++|+
T Consensus 390 ~---~~~~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 390 E---DEKPWVEDDKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred c---ccccccccccCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence 0 0011223457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcchhHHHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 000968 1076 AAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATIN 1155 (1207)
Q Consensus 1076 ~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~~lg~~~~ei~~~i~ 1155 (1207)
++|++++||+.|..++..+|+++|+++|++|++|++|.++|+++|||+|++|++++++.+++++|..+|+|++++.+.++
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~lg~~~~~~~~~~~ 546 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRAQQ 546 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcHHHHHHHhh
Q 000968 1156 EFRTRHLSELTELCQ 1170 (1207)
Q Consensus 1156 ~~r~~~~~~L~~~~~ 1170 (1207)
.+|+++++.++..++
T Consensus 547 ~~r~~~~~~~~~~~~ 561 (601)
T PRK03659 547 HFRRLDMRMLRELMP 561 (601)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=5.6e-71 Score=671.58 Aligned_cols=544 Identities=27% Similarity=0.396 Sum_probs=463.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhH
Q 000968 597 NEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1207)
Q Consensus 597 ~~~~~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~ 676 (1207)
++....+..+.++++++.+++.+++|+ ++|+++|||++|+++||+++|++.+.+.++.++++|++++||.+|+|+|+++
T Consensus 2 ~~~~~~~~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~ 80 (558)
T PRK10669 2 HHATPLITTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKD 80 (558)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHH
Confidence 344455667788889999999999999 9999999999999999999999887778899999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhH
Q 000968 677 LSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1207)
Q Consensus 677 Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi 756 (1207)
+|+.++..+..+..+++++++ ++++.++++|+++..++++|++++.||+++++++|+|++.+++++||+++++++++|+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl 159 (558)
T PRK10669 81 LMAVKSIAIPGAIAQIAVATL-LGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDL 159 (558)
T ss_pred HHHHhhHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHH
Confidence 999988777777778777664 5555667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 000968 757 AVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS 836 (1207)
Q Consensus 757 ~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a 836 (1207)
++++++.+++.+......+..........+.+.+...++.+++.+++++++.++++++..+.+.++.+++.+++++++++
T Consensus 160 ~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a 239 (558)
T PRK10669 160 VMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIA 239 (558)
T ss_pred HHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999888766543211111111111112222233333444444556667777777777766677888877788888777
Q ss_pred HH-HHHhcchHHHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHH
Q 000968 837 LL-TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL 915 (1207)
Q Consensus 837 ~L-ae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~ 915 (1207)
+. ++.+|+|+++|||+||+++++.++++++.+...|++++|+|+||+++||++|+..+..++..++.++++.+++|+++
T Consensus 240 ~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 240 FGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred HHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 68999999999999999999999999999888899999999999999999999988776665566667788999999
Q ss_pred HHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhcccc
Q 000968 916 VALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFEQHDV 995 (1207)
Q Consensus 916 v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~~La~rl~~~~~ 995 (1207)
+++.++++|+++++++.+|+.|+++|+|+++++..+.+.|+++++.|+++++++++|++++|++.++..++..+......
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~ 399 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEE 399 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877665554432111
Q ss_pred c-ccC---ccccccccccccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCc
Q 000968 996 R-SLL---PVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1207)
Q Consensus 996 ~-~~~---~~e~~~~~lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI 1071 (1207)
+ ... .....+.++++|+||||||++|+.+++.|+++|+++++||.|+++++.+++.|+++++||++|+++|+++|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i 479 (558)
T PRK10669 400 QTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHL 479 (558)
T ss_pred cccccccccccccccccCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCc
Confidence 1 000 011123456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEecCCcchhHHHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecCCcHHHHHHHHHHHHH
Q 000968 1072 ERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1207)
Q Consensus 1072 ~~A~~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~~ 1142 (1207)
++||.++++++||..|..++.++|+.+|+.+|++|++|+++.+.++++|+|+|++|+.+.+..+++.+.++
T Consensus 480 ~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~ 550 (558)
T PRK10669 480 DCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETP 550 (558)
T ss_pred cccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888877654
No 4
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-44 Score=420.32 Aligned_cols=379 Identities=39% Similarity=0.623 Sum_probs=314.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc-CchhHHHHHHHHHHHHHHHHhhccChhH
Q 000968 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1207)
Q Consensus 598 ~~~~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~-~~~~l~~LaeLGLv~LLF~aGLEldl~~ 676 (1207)
+...++.++.++++++.+++++++|+ ++|+++||+++|+++||.+++.+. +.+.++.++++|++++||.+|+|+|+++
T Consensus 3 ~~~~~l~~~~iiL~~a~i~~~l~~rl-~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 3 MLSLILLQLLILLLVAVILGPLFKRL-GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence 44567889999999999999999999 999999999999999996665554 5577788999999999999999999999
Q ss_pred HHhchhh-HHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhh
Q 000968 677 LSSMKKY-VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQ 754 (1207)
Q Consensus 677 Lr~~~k~-il~Lg~l~vllt~vlvglll~~-llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~n 754 (1207)
+|+++++ .+..+..++.++++ .+....+ .+|++|..++++|.+++.||+++++++++|+|.++++.|++++++++++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~ 160 (397)
T COG0475 82 LKKVGRSVGLGVAQVGLTAPFL-LGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFD 160 (397)
T ss_pred HHHhchhhhhhHHHHHHHHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999 44444444444432 3322222 4899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 000968 755 DLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILG 834 (1207)
Q Consensus 755 Di~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg 834 (1207)
|+++++++++++.+....+.. .. .+...+....+..++.+.+++|+.+|++++..+.+.+|.++..+++++++
T Consensus 161 Di~~i~lLai~~~l~~~g~~~---~~----~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~ 233 (397)
T COG0475 161 DIAAILLLAIVPALAGGGSGS---VG----FILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLG 233 (397)
T ss_pred HHHHHHHHHHHHHHccCCCcc---Hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999988886442111 11 11222233344444455557899999999999889999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhcccchh-HHHHHHHHhHHh-HHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHH
Q 000968 835 TSLLTARAGLSMALGAFLAGLLLAETEFS-LQVESDIAPYRG-LLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGK 912 (1207)
Q Consensus 835 ~a~Lae~lGLS~~LGAFvAGLvLsn~~~~-~~l~e~l~~~~~-~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K 912 (1207)
.+++++.+|+|+++|||+||+++++++++ |+++++++|+++ +|+|+||+++||.+|+..+..++..+++++.+.+++|
T Consensus 234 ~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K 313 (397)
T COG0475 234 AAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGK 313 (397)
T ss_pred HHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 899999999988 9999999999999999999998888788888999999
Q ss_pred HHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhhhhh
Q 000968 913 TILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASR 989 (1207)
Q Consensus 913 ~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~~La~r 989 (1207)
.+++++.++.+|++++.++..|+.+.++|+++++.++.+.. +.++++.+... +.++++.+|+.....+.+.++
T Consensus 314 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~---v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 314 ILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAV---VILSMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776 34555555554 444455555544333344444
No 5
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3e-43 Score=443.04 Aligned_cols=411 Identities=18% Similarity=0.313 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHHHHHHHHHHHHHHHHhhc
Q 000968 602 SLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTKAIAEFGVVFLLFNIGLE 671 (1207)
Q Consensus 602 ~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~----------~~~l~~LaeLGLv~LLF~aGLE 671 (1207)
++++++++++++.+++.+++|+ ++|+++|||++|+++||+++|.++. ...++.++++|++++||.+|+|
T Consensus 44 ~llql~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 44 FILQLTLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567788888999999999999 9999999999999999999998742 1357899999999999999999
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC------hHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhH
Q 000968 672 LSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP------GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGR 745 (1207)
Q Consensus 672 ldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls------~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Gr 745 (1207)
+|++.+|+.+++.+.+++.++++++++..++.+++ ++. +..++++|++++.||+++++++|+|+++++++.|+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~Gr 201 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGR 201 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHH
Confidence 99999999999999999999999876443333322 321 23468899999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----c
Q 000968 746 ATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ-----N 820 (1207)
Q Consensus 746 l~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~-----s 820 (1207)
++++.++++|+++|++++++..+.... ..... .++ .++..++.+++..++.||++.|+.++. .
T Consensus 202 laLsaavv~Dl~~~ilLav~~~l~~~~---~~~~~----~l~-----~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~ 269 (832)
T PLN03159 202 IAMSAALVNDMCAWILLALAIALAEND---STSLA----SLW-----VLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETF 269 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---Ccchh----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCc
Confidence 999999999999999998776554321 11111 111 112222233344466678878776542 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchhHHHHHHHHhH-HhHHHHHHHHHHcCccChhhhccc--
Q 000968 821 AEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY-RGLLLGLFFMTVGMSIDPKLLLSN-- 897 (1207)
Q Consensus 821 ~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~-~~~flplFFv~IGm~Idl~~L~~~-- 897 (1207)
.+.++.++++++++++++++.+|+|+++|||++|+++|+.++++.+.++++++ .++|+|+||+++||++|+..+...
T Consensus 270 ~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~ 349 (832)
T PLN03159 270 SEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPAT 349 (832)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchH
Confidence 45666677888888999999999999999999999999988999999999998 799999999999999999887653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHH-HHHHHhH
Q 000968 898 FPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLV-GISMALT 976 (1207)
Q Consensus 898 ~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvv-vlS~lIt 976 (1207)
|..+++++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+++++++ ++|++++
T Consensus 350 ~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~ 429 (832)
T PLN03159 350 WGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALIT 429 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHH
Confidence 334445556778999999999999999999999999999999999999999999999999999999988765 5788999
Q ss_pred HHHHhhhhhhhhhhhcccccccCccccccccccccccccCC-CchHHHHHHHHHh
Q 000968 977 PWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIILCGF-GRVGQIIAQLLSE 1030 (1207)
Q Consensus 977 PlL~~~~~~La~rl~~~~~~~~~~~e~~~~~lk~hVIIiG~-GrvG~~Ia~~L~~ 1030 (1207)
|++.++++. .+|+..+..+.... .+...++ ++++|=+ -+-...+...|+.
T Consensus 430 Plv~~ly~p-~rk~~~~~~r~i~~-~~~~~el--riL~cv~~~~~v~~li~Lle~ 480 (832)
T PLN03159 430 PVVTVVYRP-ARRLVGYKRRTIQR-SKHDAEL--RMLVCVHTPRNVPTIINLLEA 480 (832)
T ss_pred HHHHHHhCH-Hhhhcccccccccc-CCCCCce--eEEEEeccCCcHHHHHHHHHh
Confidence 998776543 34443333232211 1122233 4555544 2344455555544
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-43 Score=384.05 Aligned_cols=393 Identities=29% Similarity=0.470 Sum_probs=351.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhH
Q 000968 597 NEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1207)
Q Consensus 597 ~~~~~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~ 676 (1207)
+|+...+..+...+..++++|.+..|+ ++||.+||+++|+++||+..|++.+......++|+|++++||-+|++++++.
T Consensus 2 ~h~tpli~tiv~gl~lAFl~G~lA~rl-rlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 2 HHDTPLITTIVGGLVLAFLLGALANRL-RLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHH
Confidence 344444455666777899999999999 9999999999999999999999999888889999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhH
Q 000968 677 LSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1207)
Q Consensus 677 Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi 756 (1207)
+...+...+..++.|+.+.+ ..+..+.+++||++...+++|.++|.+||.+.++.|+|++.+++..||+++++.+++|+
T Consensus 81 LLavk~iAipgAl~qia~at-~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl 159 (408)
T COG4651 81 LLAVKAIAIPGALAQIALAT-LLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDL 159 (408)
T ss_pred HhhHHHHhcchHHHHHHHHH-HHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHH
Confidence 99888877777888776654 35666677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 000968 757 AVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS 836 (1207)
Q Consensus 757 ~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a 836 (1207)
+.++.+++++.+++.....+.++......+++...+....+.+.+++|+.+.++++.+++...++|+|.+.+++++++++
T Consensus 160 ~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa 239 (408)
T COG4651 160 AMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVA 239 (408)
T ss_pred HHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence 99999999988876543444555556667788888888888899999999999999999999999999999999999887
Q ss_pred H-HHHHhcchHHHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHH
Q 000968 837 L-LTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL 915 (1207)
Q Consensus 837 ~-Lae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~ 915 (1207)
+ .++.+|+|+++|||++|+++++++.+|+..+..-|.++.|..+||+++||..||..+.+++..++..+++++.+|-+.
T Consensus 240 ~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~a 319 (408)
T COG4651 240 FGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVA 319 (408)
T ss_pred hccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHH
Confidence 5 467899999999999999999999999999999999999999999999999999999887777777888889999999
Q ss_pred HHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh
Q 000968 916 VALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFE 991 (1207)
Q Consensus 916 v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~~La~rl~ 991 (1207)
.+...+.||.|.++++.++..++|.|||++++++.+...+++++.....++...++|+++.|++..+.+++.++.+
T Consensus 320 af~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~~~e 395 (408)
T COG4651 320 AFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAE 395 (408)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999888899999999999999999987765554443
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5.3e-38 Score=383.09 Aligned_cols=372 Identities=22% Similarity=0.232 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHhhccChhHHH
Q 000968 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~--~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr 678 (1207)
.+++.++++++++.+++.+++|+ ++|.+++|+++|+++||+++|.+. +.+..+.++++|++++||.+|+++|++.+|
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~ 84 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFR 84 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHH
Confidence 55677888999999999999999 999999999999999999999653 345678999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCC-CCChhhHHHHHHHhhhhHH
Q 000968 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLA 757 (1207)
Q Consensus 679 ~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~-l~s~~Grl~Lsvsl~nDi~ 757 (1207)
+.+++++.+++++++++++++++++++++|++|..++++|+++++||++++.+++++.++ ++++.++++.+++.+||.+
T Consensus 85 ~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ 164 (562)
T PRK05326 85 PALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPM 164 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHH
Confidence 999999999999999999888888888999999999999999999999999999999994 6899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 000968 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1207)
Q Consensus 758 aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~ 837 (1207)
+++++.++..+..... .+..+. .+...+...+++++++++++ ++..+++++.. ....+.+.++++++++++++
T Consensus 165 ai~l~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~g~~~G~~~g-~l~~~l~~~~~-~~~~~~~~i~~l~~~l~~~~ 237 (562)
T PRK05326 165 AVFLTITLIELITGGE-TGLSWG----FLLLFLQQFGLGALIGLLGG-WLLVQLLNRIA-LPAEGLYPILVLAGALLIFA 237 (562)
T ss_pred HHHHHHHHHHHHhCCC-CcchHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-CchhhHHHHHHHHHHHHHHH
Confidence 9888766544432221 111111 12222333344444444444 44455555552 22345666777888999999
Q ss_pred HHHHhcchHHHHHHHHHHhhcccc--hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchh-hHHHHHHHHHHHHHH
Q 000968 838 LTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFP-VITGALGLLIGGKTI 914 (1207)
Q Consensus 838 Lae~lGLS~~LGAFvAGLvLsn~~--~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~-~illlllllll~K~l 914 (1207)
+++.+|+|+++|+|++|++++|.+ ..+.+.+..+.+.+++.|+||+++|+.+|+..+...++ .+++.+++.+++|++
T Consensus 238 ~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 238 LTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPL 317 (562)
T ss_pred HHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 44456666666778999999999999999988765433 333344567789999
Q ss_pred HHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccch-hhhHHHHHHHHHHHHHhHHHHHh
Q 000968 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMS-SQLSSLLFLLVGISMALTPWLAA 981 (1207)
Q Consensus 915 ~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs-~el~siLvlvvvlS~lItPlL~~ 981 (1207)
++++..+.+++++++++++++. ++||+++++++..+...++.+ +.++.++++++++|+++.++...
T Consensus 318 ~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~ 384 (562)
T PRK05326 318 AVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLP 384 (562)
T ss_pred HHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHH
Confidence 9999999999999999999996 799999999999998888875 56778888888999999777665
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.1e-37 Score=359.29 Aligned_cols=362 Identities=30% Similarity=0.470 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc-hhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHH
Q 000968 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV-HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGL 687 (1207)
Q Consensus 609 LLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~-~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~L 687 (1207)
+++.+.+.+.+++|+ ++|++++|+++|+++||.+++++++. ...+.++++|+++++|.+|+|+|++.+|+.+++.+.+
T Consensus 4 li~~~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~ 82 (380)
T PF00999_consen 4 LILLAFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL 82 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EeehHHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 344466666689999 89999999999999999999987776 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHH
Q 000968 688 GSAQVLVTAVVVGLVAHF---VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLIL 764 (1207)
Q Consensus 688 g~l~vllt~vlvglll~~---llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~l 764 (1207)
++.+++++++++++.+++ ..|+++..++++|.+++.|||++++++++|.+..+++.++++.+++++||+++++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~ 162 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSI 162 (380)
T ss_dssp -------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhh
Confidence 999999998876777764 57999999999999999999999999999888889999999999999999999988876
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHh
Q 000968 765 IPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGTSLLTARA 842 (1207)
Q Consensus 765 i~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~--~s~elf~l~~Lal~Lg~a~Lae~l 842 (1207)
+....... ..... ....... +..++++++ ..++.+++.+++.+. ++.+.....++++++.++++++.+
T Consensus 163 ~~~~~~~~--~~~~~---~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~ 232 (380)
T PF00999_consen 163 LISLAQAS--GQSSL---GQLLLSF----LWIILIGIV-IGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEIL 232 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccc--ccccc---cchhcch----hhhhhhhee-eecccchHHHHhhhhccccchhhHHHHHHHHhhhccccccc
Confidence 65443111 11111 1111111 111111122 223334444454444 566677777889999999999999
Q ss_pred cchHHHHHHHHHHhhcccchhHHHHHHHHhHH-hHHHHHHHHHHcCccChhhhc---cchhhHHHHHHHHHHHHHHHHHH
Q 000968 843 GLSMALGAFLAGLLLAETEFSLQVESDIAPYR-GLLLGLFFMTVGMSIDPKLLL---SNFPVITGALGLLIGGKTILVAL 918 (1207)
Q Consensus 843 GLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~~-~~flplFFv~IGm~Idl~~L~---~~~~~illlllllll~K~l~v~l 918 (1207)
|+|+++|+|++|+++++.+.++++.+++++++ ++|.|+||+++|+++|++.+. ..|...+.+++..+++|++++++
T Consensus 233 g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~ 312 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYL 312 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeeh
Confidence 99999999999999998888888999999998 999999999999999998884 34455555666777899999999
Q ss_pred HHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHh
Q 000968 919 VGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1207)
Q Consensus 919 ~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~ 981 (1207)
..++.|.++++++.+|+.+.++|+++++++..+.+.+.++++.+.++++++++|++++|+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 313 ASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp ----------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred hhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888765
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=9.3e-33 Score=308.01 Aligned_cols=272 Identities=48% Similarity=0.790 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHH
Q 000968 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA 690 (1207)
Q Consensus 611 l~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l 690 (1207)
+++.+++.+++|+ ++|++++|+++|+++||+++|.+++.+..+.++++|+.+++|.+|+|+|++.+|+++++++.+++.
T Consensus 2 ~~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 2 LAAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVL 80 (273)
T ss_pred cHHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4577788999999 999999999999999999999988778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 000968 691 QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISP 770 (1207)
Q Consensus 691 ~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~ 770 (1207)
+++++++++++.+++++|+++..++++|++++.||+++++++++|++..+++.|+++++++++||+.+++++.++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~ 160 (273)
T TIGR00932 81 QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLAT 160 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999777777777788999999999999999999999999999999999999999999999999999999887765543
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 000968 771 NSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGA 850 (1207)
Q Consensus 771 ~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGA 850 (1207)
.. ...... .....+..++.+++.+++++|+.+++.++..+.++.+.++..++.++++.+++++.+|+|+++|+
T Consensus 161 ~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lga 233 (273)
T TIGR00932 161 SA---STEHVA----LALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLSMALGA 233 (273)
T ss_pred CC---CcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 21 111111 11122233333334445566666777776665556677777788888999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccC
Q 000968 851 FLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSID 890 (1207)
Q Consensus 851 FvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Id 890 (1207)
|++|+++++.+.++.+.++++++.++|+|+||+++|+++|
T Consensus 234 f~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 234 FLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 9999999998888889999999999999999999999986
No 10
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.98 E-value=1.6e-29 Score=308.96 Aligned_cols=348 Identities=16% Similarity=0.080 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHhhcccccccccCch------hHHHHHHHHHHHHHHHHhhccChh
Q 000968 603 LFDVLWLLLASVIFVPIFQ-KIPGGSPVLGYLAAGILIGPYGLSIIRHVH------GTKAIAEFGVVFLLFNIGLELSVE 675 (1207)
Q Consensus 603 Ll~l~lLLl~A~ll~~L~~-Rl~~lP~IVGyLLaGILLGP~gLglI~~~~------~l~~LaeLGLv~LLF~aGLEldl~ 675 (1207)
+..++.++++..++..+++ |+ .+|..+.++++|+++||++++++++.. ....++++++++++|.+|++++++
T Consensus 15 ~~~lG~~lll~~l~s~~lkeRl-~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~ 93 (810)
T TIGR00844 15 YSCVGIFSSIFSLVSLFVKEKL-YIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK 93 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3444555555444444555 88 899999999999999999998776432 223389999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHhhccccCcHHHHHHHHHh---cCCCCChhhHHHHHHH
Q 000968 676 RLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV-SGLPGPASIVIGNGLALSSTAVVLQVLQE---RGESTSRHGRATFSVL 751 (1207)
Q Consensus 676 ~Lr~~~k~il~Lg~l~vllt~vlvglll~~l-lGls~~~ALlLGailS~TStAVVl~IL~e---lg~l~s~~Grl~Lsvs 751 (1207)
.+++.|+.++.+.+++++++++++++++|++ +|++|..|+++|+++++|+|+.+..+++. .+ .+.+...++.+++
T Consensus 94 ~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ES 172 (810)
T TIGR00844 94 YMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCES 172 (810)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhh
Confidence 9999999999999999999999999998887 69999999999999999999999999873 33 4678889999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHH
Q 000968 752 LFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTL 829 (1207)
Q Consensus 752 l~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~--s~elf~l~~L 829 (1207)
.+||.++++++.+...+......++..... +.+...++.+++++++++++|+ +..++++|+.++. ..+.++...+
T Consensus 173 GlNDGlAfpfv~LaL~ll~~~~~g~~~~~~--w~l~~~L~~i~~GiliG~vvG~-l~~~Ll~~l~rr~~i~~esfla~~L 249 (810)
T TIGR00844 173 GCNDGLAFPFVFLSMDLLLYPGRGGEIVKD--WICVTILWECIFGSILGCIIGY-CGRKAIRFAEGKNIIDRESFLAFYL 249 (810)
T ss_pred hcccHHHHHHHHHHHHHHhccCccccchhh--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHH
Confidence 999999988775443332211111111111 1233444556666777777774 4455666665433 4556666678
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhcccch-hHHHH-HHH-HhHHhHHHHHHHHHHcCccChhhhcc------chhh
Q 000968 830 LVILGTSLLTARAGLSMALGAFLAGLLLAETEF-SLQVE-SDI-APYRGLLLGLFFMTVGMSIDPKLLLS------NFPV 900 (1207)
Q Consensus 830 al~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~-~~~l~-e~l-~~~~~~flplFFv~IGm~Idl~~L~~------~~~~ 900 (1207)
+++++++.+++.+|.|++|++|+||+++++... .++.. ..+ +.+..++..++|+++|+.+.+..+.. .|..
T Consensus 250 aLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ 329 (810)
T TIGR00844 250 ILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRL 329 (810)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHH
Confidence 888888899999999999999999999998642 22211 112 22345778899999999998776643 3555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CcchhhhhhhhhhcCCCcchhhHHHHHHHhhcc
Q 000968 901 ITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGI 956 (1207)
Q Consensus 901 illlllllll~K~l~v~l~~~l~--g~~~real~lGL~La~rGe~alVLa~lal~~gl 956 (1207)
+++.++++++.|+.+++++..+. ..+|++++++|+. ++||..+++.+..+...+.
T Consensus 330 ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWF-GpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 330 IILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHF-GPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheee-ccccHHHHHHHHHHHHhhh
Confidence 66666777888988888765443 4689999999986 9999999999888877654
No 11
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.4e-30 Score=317.35 Aligned_cols=369 Identities=21% Similarity=0.297 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHHHHHHHHHHHHHHHHhh
Q 000968 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTKAIAEFGVVFLLFNIGL 670 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~----------~~~l~~LaeLGLv~LLF~aGL 670 (1207)
.+++.+.+++++..++..+++++ ++|.++.++++||++||+.+|.+.. ...++.++.+|..+++|..|+
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl-~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl 101 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPL-GQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888899999999999 9999999999999999999987632 134689999999999999999
Q ss_pred ccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh-----CC-----ChHHHHHHhhccccCcHHHHHHHHHhcCCCC
Q 000968 671 ELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS-----GL-----PGPASIVIGNGLALSSTAVVLQVLQERGEST 740 (1207)
Q Consensus 671 Eldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~ll-----Gl-----s~~~ALlLGailS~TStAVVl~IL~elg~l~ 740 (1207)
++|.+.+++..++...+++.++++++.....+..... .. ....-..++.+.+.|+.+++..+|.|+++++
T Consensus 102 ~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~ 181 (769)
T KOG1650|consen 102 EIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN 181 (769)
T ss_pred hhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh
Confidence 9999999999999988888888888653222222221 11 1124577788899999999999999999999
Q ss_pred ChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 000968 741 SRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ- 819 (1207)
Q Consensus 741 s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~- 819 (1207)
++.||++++.++++|+++|.++.+...+...... .... .++ ..+..++..++..++.+|++.|+.++.
T Consensus 182 se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~----~~~-----~~~~~~~~~l~~~~v~~p~~~wi~kr~p 250 (769)
T KOG1650|consen 182 SELGRLALSAAVVNDVAGWILLALALAFSSELKL--SPLR----SVW-----DLVLVIGFVLFLFFVVRPLMKWIIKRTP 250 (769)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchH----HHH-----HHHHHHHHHHheeeehhhhHHHHhhcCC
Confidence 9999999999999999999888776655443211 1111 111 112223334455577899999998763
Q ss_pred ----chhHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHhhccc-chhHHHHHHHHhH-HhHHHHHHHHHHcCccChh
Q 000968 820 ----NAEIFSANTLLVILGTSLLTARAG-LSMALGAFLAGLLLAET-EFSLQVESDIAPY-RGLLLGLFFMTVGMSIDPK 892 (1207)
Q Consensus 820 ----s~elf~l~~Lal~Lg~a~Lae~lG-LS~~LGAFvAGLvLsn~-~~~~~l~e~l~~~-~~~flplFFv~IGm~Idl~ 892 (1207)
-.+.++..+++.++.++.+++.++ +++.+|+|+.|+++|+. |++..+.++++.+ .++|+|+||+..|++.|+.
T Consensus 251 e~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~ 330 (769)
T KOG1650|consen 251 EGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDIS 330 (769)
T ss_pred CCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHH
Confidence 223455667788888888998888 88999999999999986 6899999999997 6999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHH
Q 000968 893 LLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGIS 972 (1207)
Q Consensus 893 ~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS 972 (1207)
.+.. |......+....++|++++...+.++++|+++++.+|++|+.+|.++++.+..+.+.+.++.+.|.++++.++++
T Consensus 331 ~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~ 409 (769)
T KOG1650|consen 331 RINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVS 409 (769)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHH
Confidence 8877 666677778888999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhHHHHHhh
Q 000968 973 MALTPWLAAG 982 (1207)
Q Consensus 973 ~lItPlL~~~ 982 (1207)
+.++|.+...
T Consensus 410 t~I~~~~l~~ 419 (769)
T KOG1650|consen 410 TFITPPLLMF 419 (769)
T ss_pred HhhHHHHHHH
Confidence 8777665543
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=1.9e-27 Score=288.04 Aligned_cols=330 Identities=18% Similarity=0.155 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHH
Q 000968 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1207)
Q Consensus 607 ~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~ 686 (1207)
+.+++++..+..+++|+ ++|++++++++|+++||..++.. ...+.+.+..++++++||.+|+++|++.+|++++.++.
T Consensus 4 ~~l~~~~~~~~~l~~r~-~lP~~v~lil~Gi~lg~~~~~~~-~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~ 81 (525)
T TIGR00831 4 IELVMLATAVAVTVKFI-RLPYPIALILAGLLLGLAGLLPE-VPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIAL 81 (525)
T ss_pred HHHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhccccCC-CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566667888898 99999999999999998644321 11233566679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHHHH
Q 000968 687 LGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIP 766 (1207)
Q Consensus 687 Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~li~ 766 (1207)
++++++++|++++++++++++|++|..++++|+++++|||+++.+++++.+. +++..+++.+++++||..++++|.+..
T Consensus 82 la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~ 160 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAV 160 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999888899999999999999999999999999999776 788899999999999999999987765
Q ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchH
Q 000968 767 LISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSM 846 (1207)
Q Consensus 767 ~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~ 846 (1207)
.+..+. +..... ..+...+...++++++++++|+.. .+++++.. +++.....+++++++++|++++.+|+|+
T Consensus 161 ~~~~~~--~~~~~~---~~~~~f~~~~~~gi~vG~~~g~~~-~~l~~~~~--~~~~~~~~l~l~~~~~~y~lAe~lg~Sg 232 (525)
T TIGR00831 161 AVALGK--GVFDPL---NAALDFAVVCVGGIAAGLAVGYLA-YRLLRAKI--DDPLVEIALTILAPFAGFLLAERFHFSG 232 (525)
T ss_pred HHHhcC--CCCcHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 544321 111221 122223334445555566666433 33444322 2333445567888999999999999999
Q ss_pred HHHHHHHHHhhcccch----hHHHH----HHHHhHHhHHHHHHHHHHcCccChhhhccch------h-h-H-------HH
Q 000968 847 ALGAFLAGLLLAETEF----SLQVE----SDIAPYRGLLLGLFFMTVGMSIDPKLLLSNF------P-V-I-------TG 903 (1207)
Q Consensus 847 ~LGAFvAGLvLsn~~~----~~~l~----e~l~~~~~~flplFFv~IGm~Idl~~L~~~~------~-~-i-------ll 903 (1207)
++++|++|+++++... ..+.. ...+.+..++.+++|+++|+.+.. .+...| + . + ++
T Consensus 233 ilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (525)
T TIGR00831 233 VIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG-TIFSAWKEILVAPAAVILALFTNAFV 311 (525)
T ss_pred HHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999998532 22222 233344567799999999999853 221111 0 0 1 11
Q ss_pred HHHHHHHHHHHHHHHHH--Hh-----hCcchhhhhhhhhhcCCCcchhhHHHH
Q 000968 904 ALGLLIGGKTILVALVG--RL-----FGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1207)
Q Consensus 904 lllllll~K~l~v~l~~--~l-----~g~~~real~lGL~La~rGe~alVLa~ 949 (1207)
+...+++.|++.++... ++ .+++|++.+.++|. ++||.+++.++.
T Consensus 312 i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al 363 (525)
T TIGR00831 312 IYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHH
Confidence 11123345554333221 11 24678999988876 779998887553
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-25 Score=266.29 Aligned_cols=341 Identities=23% Similarity=0.248 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC--chhHHHHHHHHHHHHHHHHhhccChhHHH
Q 000968 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~--~~~l~~LaeLGLv~LLF~aGLEldl~~Lr 678 (1207)
..++...++++.+.+...+.+|+ .+|.++.+++.|++.||.+++.+.. ....+.+..+++++++|..|+++|++.+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~ 84 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELR 84 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 44567778888899999999999 8899999999999999999988765 34556777999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHH
Q 000968 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1207)
Q Consensus 679 ~~~k~il~Lg~l~vllt~vlvglll~~ll-Gls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~ 757 (1207)
++++.++.+++..+++|+++++++.|+++ +++|..|+++|+++++|||+++.+++++.+. +.+..+++.+++++||..
T Consensus 85 ~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~v-p~ri~~iL~gESl~ND~~ 163 (429)
T COG0025 85 RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRV-PKRIRTILEGESLLNDGV 163 (429)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCCC-CHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999998875 7788899999999999999999999999776 889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHH
Q 000968 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGT 835 (1207)
Q Consensus 758 aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~--~s~elf~l~~Lal~Lg~ 835 (1207)
+++++.+...+....... + ........+...++++.+++++| ++.+++++++.++ .+.......++...++.
T Consensus 164 giv~f~~~l~~~~~~~~~--~---~~~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 164 GIVLFKVALAALLGTGAF--S---LGWALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred HHHHHHHHHHHHhccCCC--c---hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 999997665554322111 1 11233444455556666666666 4455666777653 23445566789999999
Q ss_pred HHHHHHhcchHHHHHHHHHHhhcccc--------hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccc-hhhHHHHHH
Q 000968 836 SLLTARAGLSMALGAFLAGLLLAETE--------FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALG 906 (1207)
Q Consensus 836 a~Lae~lGLS~~LGAFvAGLvLsn~~--------~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~-~~~illlll 906 (1207)
+.+++.+|.|+.++++++|+++++.. .+.+..+..+....+++.++|+++|++++...+... ++.++..++
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~ 317 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALV 317 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999885211 122222233334567799999999999998877654 566667778
Q ss_pred HHHHHHHHHHHHHHHhhC------cchhhhhhhhhhcCCCcchhhHHHHH
Q 000968 907 LLIGGKTILVALVGRLFG------VSVISAIRTGLLLAPGGEFAFVAFGE 950 (1207)
Q Consensus 907 llll~K~l~v~l~~~l~g------~~~real~lGL~La~rGe~alVLa~l 950 (1207)
+++++|++++++..+..+ .+|++++++++. ++||.+++.++..
T Consensus 318 ~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~ 366 (429)
T COG0025 318 AVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALL 366 (429)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHH
Confidence 889999999999998843 789999889887 8999998876654
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.8e-27 Score=263.68 Aligned_cols=364 Identities=20% Similarity=0.232 Sum_probs=294.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHhhccChhHHH
Q 000968 602 SLFDVL-WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1207)
Q Consensus 602 ~Ll~l~-lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~--~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr 678 (1207)
.++.+. ++++++++...+..|+ +.|-.+.++..|++.|..++|.++ +.+....+..+++++++|..|+.++++.+|
T Consensus 7 ~ill~gsvlvivsif~s~~ssrf-GvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r 85 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRF-GVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFR 85 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHH
Confidence 334444 6677789999999999 999999999999999999999765 334457899999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHH
Q 000968 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAV 758 (1207)
Q Consensus 679 ~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~a 758 (1207)
...++.+.++++++++|..+++.+++|+++++|.+++++|+++..|+.+.|..+|+++++ +.+.+.+..-++.-||-++
T Consensus 86 ~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl-~erv~stLEiESGtNDPmA 164 (574)
T COG3263 86 VAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNL-NERVASTLEIESGSNDPMA 164 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCCh-hhhhhhhEEeecCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999988876 7788888888899999887
Q ss_pred HHHH-HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 000968 759 VVLL-ILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1207)
Q Consensus 759 Ivll-~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~ 837 (1207)
+++- +++..+..+. ++..+..+. ..+.+..++.++++.+|+ +...+.+++ +-+..++.+++++..+.++.
T Consensus 165 vfLTitlieli~~ge--t~l~~~~ll----~f~~q~glG~l~G~~gg~-l~~~~Inr~--nLd~GL~pil~la~~Ll~fs 235 (574)
T COG3263 165 VFLTITLIELIAGGE--TNLSWGFLL----GFLQQFGLGLLLGLGGGK-LLLQLINRI--NLDSGLYPILALAGGLLIFS 235 (574)
T ss_pred eehhHHHHHHHhccc--cccCHHHHH----HHHHHhhHHHHHHHHHHH-HHHHHHHhh--ccccchhHHHHHHHHHHHHH
Confidence 7665 4454444331 112332211 123344455555555553 333444444 22455677778888899999
Q ss_pred HHHHhcchHHHHHHHHHHhhcccc--hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc-chhhHHHHHHHHHHHHHH
Q 000968 838 LTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTI 914 (1207)
Q Consensus 838 Lae~lGLS~~LGAFvAGLvLsn~~--~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~-~~~~illlllllll~K~l 914 (1207)
++..+|.|+.++.+++|++++|.+ .+|.+.+..+.+.++.-.+.|+..|+.++|+.++. ..+.+++.+..++++|++
T Consensus 236 ~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~ 315 (574)
T COG3263 236 LTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPL 315 (574)
T ss_pred HHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999986 56777777788888888888999999999999876 346667777888999999
Q ss_pred HHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccch-hhhHHHHHHHHHHHHHhHH
Q 000968 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMS-SQLSSLLFLLVGISMALTP 977 (1207)
Q Consensus 915 ~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs-~el~siLvlvvvlS~lItP 977 (1207)
++|+...-++++++|.++++|. .-||.++++++...+-.|+-+ +-+|.+.++++.+|.++-.
T Consensus 316 aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG 378 (574)
T COG3263 316 AVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQG 378 (574)
T ss_pred HHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHcc
Confidence 9999999999999999988876 679999999998887777654 4567788888888887743
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=1.2e-24 Score=264.37 Aligned_cols=332 Identities=15% Similarity=0.110 Sum_probs=238.7
Q ss_pred HHHHHHHHHh-cCCCchHHHHHHHHHhhccccccc--ccC-chhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHH
Q 000968 613 SVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSI--IRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLG 688 (1207)
Q Consensus 613 A~ll~~L~~R-l~~lP~IVGyLLaGILLGP~gLgl--I~~-~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg 688 (1207)
+.+...+..| .+++|..+.+++.|+++|+...+. ++. .-..+.+..+.++.|+|.+|++++.+.++++.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lA 100 (559)
T TIGR00840 21 AKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFA 100 (559)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3333444544 446999999999999999753222 222 234578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------hCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHH
Q 000968 689 SAQVLVTAVVVGLVAHFV--------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1207)
Q Consensus 689 ~l~vllt~vlvglll~~l--------lGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIv 760 (1207)
+++++++++++|+.+|++ .+++|..++++|+++++|||+.+.+++++.+. +.+...++.+++++||.++++
T Consensus 101 v~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v-~~~L~~ll~gESllNDavaIV 179 (559)
T TIGR00840 101 VVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHV-NEKLYIIIFGESLLNDAVTVV 179 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCC-CcchhhheehhhhhhccHHHH
Confidence 999999999999988754 25689999999999999999999999999986 888999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 000968 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA 840 (1207)
Q Consensus 761 ll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae 840 (1207)
++.++..+..... +......+...+...++..++++++++++|+ +...++++....+ .....++++++++++++++
T Consensus 180 Lf~~~~~~~~~~~-~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~-l~~~l~r~~~~~~--~~e~~l~l~~~yl~Y~lAE 255 (559)
T TIGR00840 180 LYNTFIKFHKTAD-EPVTIVDVFEGCASFFVVTCGGLLVGVVFGF-LVAFITRFTHHIR--QIEPLFVFLISYLSYLFAE 255 (559)
T ss_pred HHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHH
Confidence 9976655432111 1122222222223333334456666666664 3344455543222 3344556888889999999
Q ss_pred HhcchHHHHHHHHHHhhccc---chhHHHH----HHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHH
Q 000968 841 RAGLSMALGAFLAGLLLAET---EFSLQVE----SDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKT 913 (1207)
Q Consensus 841 ~lGLS~~LGAFvAGLvLsn~---~~~~~l~----e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~ 913 (1207)
.+|+|++++++++|+++++. ..+++.. ...+.+..++..+.|+++|+.+-......+|..+++.+++++++|+
T Consensus 256 ~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~ 335 (559)
T TIGR00840 256 TLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRV 335 (559)
T ss_pred HhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753 2223322 2333345677899999999976322111134444445566778999
Q ss_pred HHHHHHHHh------hCcchhhhhhhhhhcCCCcchhhHHHHH
Q 000968 914 ILVALVGRL------FGVSVISAIRTGLLLAPGGEFAFVAFGE 950 (1207)
Q Consensus 914 l~v~l~~~l------~g~~~real~lGL~La~rGe~alVLa~l 950 (1207)
+++++..++ .++++++.+.+++. ++||.+++.++..
T Consensus 336 l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~ 377 (559)
T TIGR00840 336 LGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALL 377 (559)
T ss_pred HHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHh
Confidence 999887654 34788998888875 7799988876653
No 16
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.89 E-value=3.1e-21 Score=225.63 Aligned_cols=131 Identities=23% Similarity=0.206 Sum_probs=123.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
++|+||||||++|+.+++.|+++|+++++||.| ..+.....|.++++||++|+++|+++|+++|++++++++||+.|.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 799999999999999999999999999999987 345666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecCCcHHHHHHHHHHHH
Q 000968 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLA 1141 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~ 1141 (1207)
.+++++|+++|+++++++++++++.++++++|+|.||.|...++..+++.+..
T Consensus 318 ~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 318 FVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred HHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999888888763
No 17
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.82 E-value=7.7e-20 Score=178.05 Aligned_cols=116 Identities=31% Similarity=0.467 Sum_probs=110.6
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
|||||||++|+.+++.|.+.+++++++|.|++.++.++..|+++++||++++++|+++++++|+.+++++++|..|+.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 68999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecC
Q 000968 1092 WALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1092 l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p 1127 (1207)
+.+|+++|+.+++++++++++.+.|+++|+|+||.|
T Consensus 81 ~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 81 LLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 999999999999999999999999999999999976
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.9e-18 Score=202.85 Aligned_cols=342 Identities=17% Similarity=0.168 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHhhccc------cccccc---CchhHHHHHHHHHHHHHHHH
Q 000968 601 ASLFDVLWLLLASVIFVPIFQKIPG---GSPVLGYLAAGILIGPY------GLSIIR---HVHGTKAIAEFGVVFLLFNI 668 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~Rl~~---lP~IVGyLLaGILLGP~------gLglI~---~~~~l~~LaeLGLv~LLF~a 668 (1207)
..++.++.+|+++.+.++++++- | +|.-+.-++.|+++|-. +.+-.. .....+.+-.+.++.++|..
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~-R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~s 113 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEET-RFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNS 113 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcc
Confidence 44566777888899999999976 5 89988889999999843 222111 12334688888999999999
Q ss_pred hhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCh
Q 000968 669 GLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSR 742 (1207)
Q Consensus 669 GLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~l------lGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~ 742 (1207)
|.+++.+.+.++...++..++.+.++++++++..++++ .+++|..++.+|+++++|+|+.+++++++.+. ...
T Consensus 114 gy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~ 192 (575)
T KOG1965|consen 114 GYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPK 192 (575)
T ss_pred cceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccc
Confidence 99999999999999999999999999988888887765 36789999999999999999999999999987 567
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 000968 743 HGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAE 822 (1207)
Q Consensus 743 ~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~e 822 (1207)
+-.++.|++++||.++|+++..+.......... .+....++..+....+...+++++|. +.--+++.+.-++.+.
T Consensus 193 Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~----~~~~~~ig~Fl~~F~gS~~lGv~~Gl-isA~~lK~~~l~~~~~ 267 (575)
T KOG1965|consen 193 LYTLVFGESVLNDAVSIVLFNTIQKFQLGSLND----WTAFSAIGNFLYTFFGSLGLGVAIGL-ISALVLKFLYLRRTPS 267 (575)
T ss_pred eeeeeecchhccchhHHHHHHHHHHHccCCchh----hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcH
Confidence 788999999999999999998887665443211 11113344444444444444544442 2222233333223444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchh------H-HHHHHHHhHHhHHHHHHHHHHcCc-cChhhh
Q 000968 823 IFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFS------L-QVESDIAPYRGLLLGLFFMTVGMS-IDPKLL 894 (1207)
Q Consensus 823 lf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~------~-~l~e~l~~~~~~flplFFv~IGm~-Idl~~L 894 (1207)
.-..+.+++.+..|+++|.+|+|+++..+.+|+++++..+. + .....++.+.-+-..+.|+++|+. ++....
T Consensus 268 lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 268 LESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 44455688889999999999999999999999999974321 1 111222223345578889999964 344333
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhh----------hhhhhhcCCCcchhhHHHH
Q 000968 895 LSN-FPVITGALGLLIGGKTILVALVGRLFGVSVISA----------IRTGLLLAPGGEFAFVAFG 949 (1207)
Q Consensus 895 ~~~-~~~illlllllll~K~l~v~l~~~l~g~~~rea----------l~lGL~La~rGe~alVLa~ 949 (1207)
... +..++...++++++|.+-++.+..+.+.-.|+. ..+.|.-.-||.+++.++.
T Consensus 348 ~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~ 413 (575)
T KOG1965|consen 348 VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALAL 413 (575)
T ss_pred eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHh
Confidence 322 234556667888999999999888765544333 2333332347777766544
No 19
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.1e-14 Score=161.26 Aligned_cols=327 Identities=17% Similarity=0.095 Sum_probs=231.0
Q ss_pred HHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHH
Q 000968 618 PIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQ 691 (1207)
Q Consensus 618 ~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~------~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~ 691 (1207)
.+=.|+ -+...+.-.+.|+++||+.+++.++. ..+..++.+-+.+=.|.+++|+.-..+.++++.++.+-+.-
T Consensus 31 yikekL-llgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpV 109 (467)
T KOG4505|consen 31 YIKEKL-LLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPV 109 (467)
T ss_pred HHHHhH-hccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 333454 34444445689999999999987642 23467888999999999999999999999999998887776
Q ss_pred HHHHHHHHHHHHHHHh-CCChHHHHHHhhccccCcHHHHHHHHHhcCC---CCChhhHHHHHHHhhhhHHHHHHHHHHHH
Q 000968 692 VLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGE---STSRHGRATFSVLLFQDLAVVVLLILIPL 767 (1207)
Q Consensus 692 vllt~vlvglll~~ll-Gls~~~ALlLGailS~TStAVVl~IL~elg~---l~s~~Grl~Lsvsl~nDi~aIvll~li~~ 767 (1207)
++..+++.+.+.|.+. +++...++++++.+++|+|.....+..+.+. .+.+...+..+++..||..+++++.+..-
T Consensus 110 mi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~ 189 (467)
T KOG4505|consen 110 MIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAID 189 (467)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 7777766666666654 8899999999999999999998888875543 34456677788999999999988754432
Q ss_pred H-hcCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHhc
Q 000968 768 I-SPNSS-KGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTLLVILGTSLLTARAG 843 (1207)
Q Consensus 768 l-a~~~s-~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~--s~elf~l~~Lal~Lg~a~Lae~lG 843 (1207)
+ ..... .++-++. ....++....+..++.++| |+.|..+++-.+.+ ++|.|....+++++.+..+.+.+|
T Consensus 190 Ll~h~~~r~~~rdwv-----~~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiG 263 (467)
T KOG4505|consen 190 LLRHKPRRKAGRDWV-----CDNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIG 263 (467)
T ss_pred HHhcCchhccCCcee-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheec
Confidence 2 21111 1111221 1122334444555556666 56666666665544 788888888999999999999999
Q ss_pred chHHHHHHHHHHhhcccc-hhHHHHH-HHHhH-HhHHHHHHHHHHcCccChhhhccc------hhhHHHHHHHHHHHHHH
Q 000968 844 LSMALGAFLAGLLLAETE-FSLQVES-DIAPY-RGLLLGLFFMTVGMSIDPKLLLSN------FPVITGALGLLIGGKTI 914 (1207)
Q Consensus 844 LS~~LGAFvAGLvLsn~~-~~~~l~e-~l~~~-~~~flplFFv~IGm~Idl~~L~~~------~~~illlllllll~K~l 914 (1207)
++-.+-.|.||++++-.+ ++.+..+ .+..+ ..+|...||++.|..++++.+... |..+++-+..++.-|+.
T Consensus 264 vddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip 343 (467)
T KOG4505|consen 264 VDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIP 343 (467)
T ss_pred hhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccc
Confidence 999999999999999654 5554443 33344 346678899999999999887542 44555444455555555
Q ss_pred HHHHHHHhh--CcchhhhhhhhhhcCCCcchhhHHHHHHH
Q 000968 915 LVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1207)
Q Consensus 915 ~v~l~~~l~--g~~~real~lGL~La~rGe~alVLa~lal 952 (1207)
++++.-.+. =.+|||++++|.. +|.|.-++-.+.++.
T Consensus 344 ~v~l~kp~iPdikswkEALFvGhF-GPIGVgAly~allar 382 (467)
T KOG4505|consen 344 AVYLMKPLIPDIKSWKEALFVGHF-GPIGVGALYYALLAR 382 (467)
T ss_pred eEEEeccCCcchhhHHHHHHhccC-CCccHHHHHHHHHHH
Confidence 555543332 1379999999975 888877766555443
No 20
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4e-16 Score=170.55 Aligned_cols=132 Identities=30% Similarity=0.346 Sum_probs=124.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh--CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~--~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
.++|+|.|++|..+++.|.+.|+.+++||.|++++++... .+.+++.||++++++|++||+++||++|++|++|..|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~ 81 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNS 81 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHH
Confidence 4799999999999999999999999999999999988544 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecCCcHHHHHHHHHHHHH
Q 000968 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~~ 1142 (1207)
.++..+++.+.-.++|||++++.|.+.+++.|+|++|.|+..++..+++.+..+
T Consensus 82 i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p 135 (225)
T COG0569 82 VLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTP 135 (225)
T ss_pred HHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcCC
Confidence 999999887656699999999999999999999999999999999999888764
No 21
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.65 E-value=1.8e-13 Score=160.26 Aligned_cols=267 Identities=19% Similarity=0.242 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccChhHH----HhchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCc
Q 000968 652 GTKAIAEFGVVFLLFNIGLELSVERL----SSMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (1207)
Q Consensus 652 ~l~~LaeLGLv~LLF~aGLEldl~~L----r~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TS 725 (1207)
....+.+.-+.++.|.+|+|+..+.+ ++.++..+ ..++.++++|.+ .|+.++.....+.--..+-+.||
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPal-----iy~~~n~~~~~~~~GW~Ip~ATD 136 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPAL-----IYVAVNLAGGGALRGWAIPTATD 136 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHH-----HHHHHhCCchhhhhhhhhhhhhH
Confidence 34567777788899999999965533 33333332 345566666653 33333333233233334456799
Q ss_pred HHHHHHHHHhcCCC-CChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 726 TAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGG 804 (1207)
Q Consensus 726 tAVVl~IL~elg~l-~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg 804 (1207)
++.++.+|...|.. ++..+..+++.+++||+.++++++++- +++..+.. +.. .++.++++
T Consensus 137 IAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY-------t~~i~~~~----L~~----a~~~~~~l---- 197 (423)
T PRK14853 137 IAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY-------TSELNLEA----LLL----ALVPLALF---- 197 (423)
T ss_pred HHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc-------CCCCCHHH----HHH----HHHHHHHH----
Confidence 99999999998754 778888999999999999998887652 12222221 110 11111111
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccc------------chhHHHHHHHHh
Q 000968 805 RLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET------------EFSLQVESDIAP 872 (1207)
Q Consensus 805 ~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~------------~~~~~l~e~l~~ 872 (1207)
++++ +.+.+..+.. +.+.+++++.+...|+|+.+|+|++|+++|.. +..+++++.+++
T Consensus 198 -~~l~-------~~~V~~~~~Y--~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p 267 (423)
T PRK14853 198 -WLLV-------QKRVRKWWLL--LPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP 267 (423)
T ss_pred -HHHH-------HcCCchhhHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence 1111 1111112221 23345667788999999999999999999842 224678889999
Q ss_pred HH-hHHHHHH-HHHHcCccCh-hhhccch--hhHHHHHHHHHHHHHHHHHHHHHhh----------Ccchhhhhhhhhhc
Q 000968 873 YR-GLLLGLF-FMTVGMSIDP-KLLLSNF--PVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLL 937 (1207)
Q Consensus 873 ~~-~~flplF-Fv~IGm~Idl-~~L~~~~--~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~L 937 (1207)
+. .+++|+| |..+|+.+|. ..+...+ +..+++++.++++|+++++..+++. +++|++-+-+|+.-
T Consensus 268 ~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~ 347 (423)
T PRK14853 268 LSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLA 347 (423)
T ss_pred HHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHH
Confidence 84 6889999 9999999986 4342222 3556777889999999998887764 46788876666554
Q ss_pred CCCcchhhHHHHHHH
Q 000968 938 APGGEFAFVAFGEAV 952 (1207)
Q Consensus 938 a~rGe~alVLa~lal 952 (1207)
+..=++++.+...++
T Consensus 348 GIGFTmSlFI~~LAf 362 (423)
T PRK14853 348 GIGFTVSLLIGELAF 362 (423)
T ss_pred HHHHHHHHHHHHhhc
Confidence 444455666666677
No 22
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.57 E-value=9.3e-15 Score=174.16 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=125.2
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.+|++|||+|++|+.+++.|.+.|+++++||.|+++++.++.. +..+++||++++++|+++++++|+.++++++++..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~ 310 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA 310 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH
Confidence 5899999999999999999999999999999999999988764 78899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeecCCcHHHHHHHHHHHHH
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~~ 1142 (1207)
|+.+++.+|++++. ++|++++++++...++.+|+|+|+.|...++..+++.+..+
T Consensus 311 n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~~ 365 (453)
T PRK09496 311 NILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRRG 365 (453)
T ss_pred HHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhcc
Confidence 99999999999875 99999999999999999999999999999999888887764
No 23
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=6.1e-14 Score=146.01 Aligned_cols=163 Identities=38% Similarity=0.496 Sum_probs=148.9
Q ss_pred cccccccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1005 TDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1005 ~~~lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
...+.+|+++||+|++|+.+++.|...+++++++|.|++.++.++..|+++++||+++.++|..+++++|+.++++++++
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~vi~~~~~~ 96 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARAVIVTLSDD 96 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeEEEEecCCH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCCceEEEeeCC-hHHHHHHHhCCCCeeecCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcHH
Q 000968 1085 GANYRTVWALSKYFPNVKTFVRAHD-IDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRTRHLS 1163 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~l~P~i~IIaRa~d-~~~~~~L~~aGAd~VI~p~~eaal~La~~iL~~lg~~~~ei~~~i~~~r~~~~~ 1163 (1207)
..|..++..++..+|++++++|.++ ..+...+...|++.+++++...+..++..++...+.............+.....
T Consensus 97 ~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (212)
T COG1226 97 ATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEAILALIEIRRDRLA 176 (212)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchhhhhhhHHHHHHHHHh
Confidence 9999999999999999999999999 788899999999999999999999999999999888776665555555655444
Q ss_pred HHHH
Q 000968 1164 ELTE 1167 (1207)
Q Consensus 1164 ~L~~ 1167 (1207)
....
T Consensus 177 ~~~~ 180 (212)
T COG1226 177 DLEE 180 (212)
T ss_pred hhhh
Confidence 4443
No 24
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.48 E-value=1.4e-13 Score=164.22 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=121.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
|++|||+|++|+.+++.|.+.|++|+++|.|+++++.++. .|+++++||++++++|+++++++|+.++++++++..|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~ 81 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNMV 81 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHHH
Confidence 7899999999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEeeCChHH---HHHH--HhCCCCeeecCCcHHHHHHHHHHHHH
Q 000968 1090 TVWALSKYFPNVKTFVRAHDIDH---GLNL--EKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~~~---~~~L--~~aGAd~VI~p~~eaal~La~~iL~~ 1142 (1207)
++..+|+++|+.++|+++.+.++ ...+ +++|+|.||.|...++..+++.+..+
T Consensus 82 ~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~~ 139 (453)
T PRK09496 82 ACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEYP 139 (453)
T ss_pred HHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcCC
Confidence 99999999999999999988776 3333 78999999999999998888876644
No 25
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.36 E-value=1.7e-10 Score=133.37 Aligned_cols=268 Identities=20% Similarity=0.213 Sum_probs=158.4
Q ss_pred hHHHHHHHHHHHHHHHHhhccChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCc
Q 000968 652 GTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (1207)
Q Consensus 652 ~l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TS 725 (1207)
....+.+.-+.++.|.+|+|+..+.+. +.++..+ .-++.++++|.+ .|+.+....+...-=-.+-..||
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~~~~~~~~GW~IP~ATD 126 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNANDPITREGWAIPAATD 126 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCccccccHHH
Confidence 345677777888999999999877654 3233332 345556666543 23333221111111112334588
Q ss_pred HHHHHHHHHhcCC-CCChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 726 TAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGG 804 (1207)
Q Consensus 726 tAVVl~IL~elg~-l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg 804 (1207)
++..+.++.=.|. .+.......++.+++||+.++++.++. ++.+..+.. +. ...+++.++
T Consensus 127 iAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~F-------Yt~~i~~~~----L~----~a~~~~~~l---- 187 (373)
T TIGR00773 127 IAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALF-------YTNDLSMAA----LL----VAAVAIAVL---- 187 (373)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeee-------cCCCCCHHH----HH----HHHHHHHHH----
Confidence 8888777765543 233445566788999999999877654 112222211 11 011111111
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccc-----hhHHHHHHHHhHH-hHHH
Q 000968 805 RLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GLLL 878 (1207)
Q Consensus 805 ~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~-----~~~~l~e~l~~~~-~~fl 878 (1207)
+++ ++ .+.+..... +.+.+..++.....|+|+.+|+|++|+++|..+ ..+++++.++|.. .+++
T Consensus 188 -~~~----~~---~~v~~~~~y--~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 188 -AVL----NR---CGVRRLGPY--MLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred -HHH----HH---cCCchhhHH--HHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 111 11 122222221 122223333347999999999999999999742 2467788888875 5678
Q ss_pred HHH-HHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh----------CcchhhhhhhhhhcCCCcchhhH
Q 000968 879 GLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAFV 946 (1207)
Q Consensus 879 plF-Fv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~La~rGe~alV 946 (1207)
|+| |...|..+|...+.. ..+..+++++..+++|+++++..+++. +.+|++-+-+|+.-...=++++.
T Consensus 258 PlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlf 337 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIF 337 (373)
T ss_pred HHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999998654432 134466777888999999999988764 45777766666543333345566
Q ss_pred HHHHHHh
Q 000968 947 AFGEAVN 953 (1207)
Q Consensus 947 La~lal~ 953 (1207)
+...++.
T Consensus 338 I~~LAf~ 344 (373)
T TIGR00773 338 IASLAFG 344 (373)
T ss_pred HHHHhcC
Confidence 6666663
No 26
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.6e-12 Score=153.89 Aligned_cols=315 Identities=14% Similarity=0.080 Sum_probs=200.0
Q ss_pred CchHHHHHHHHHhhccccccc--ccC-chhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHH
Q 000968 626 GSPVLGYLAAGILIGPYGLSI--IRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1207)
Q Consensus 626 lP~IVGyLLaGILLGP~gLgl--I~~-~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvgll 702 (1207)
+|.-..+|+.|+++|-...+. +.. .-....+--.-++.|+|.+|.-|.-+.+..+..+++..+++|.+.-++.+|..
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~s 147 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGAS 147 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 576677888888888643332 211 11234566667888999999999999999999999999999988766666654
Q ss_pred HHH-----HhC--CChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCC
Q 000968 703 AHF-----VSG--LPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKG 775 (1207)
Q Consensus 703 l~~-----llG--ls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g 775 (1207)
+|. ++| .+...-+++|.++|+.+|+.|+.++.|... +.-+--++.|++++||.+.++++-+...+...++.
T Consensus 148 L~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~- 225 (670)
T KOG1966|consen 148 LYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSD- 225 (670)
T ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhccc-
Confidence 432 355 346779999999999999999999999987 55566778999999999999998555433221100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 000968 776 GVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGL 855 (1207)
Q Consensus 776 ~~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGL 855 (1207)
..............+...+++.++++++++. ..-..++-.+-+ -+-.++++++.+.+|..+|.+++|++++..++|+
T Consensus 226 n~~~~d~~~G~~sFfVVslGG~lvGivfafl-~sl~tkft~~vr--viePvfif~~pYlaYL~aEm~hlSgIlAii~CG~ 302 (670)
T KOG1966|consen 226 NLTTIDYVLGVVSFFVVSLGGALVGIVFAFL-ASLVTKFTKHVR--VLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGL 302 (670)
T ss_pred ceeEeeeecceeEEEEEecCchhHHHHHHHH-HHHHHHhhccee--eecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000111111122333334444422 222223322222 1223445788899999999999999999999999
Q ss_pred hhccc---chhHHHHHHHHhH----HhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhC----
Q 000968 856 LLAET---EFSLQVESDIAPY----RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFG---- 924 (1207)
Q Consensus 856 vLsn~---~~~~~l~e~l~~~----~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~g---- 924 (1207)
.+... ...++.......+ ...-.++.|++.|.+.--..-..+|..+++.++..++.|.+++...+++.+
T Consensus 303 ~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~ 382 (670)
T KOG1966|consen 303 CMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRM 382 (670)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhhe
Confidence 99864 2333433333333 334478889999987632211113445556667777889999888887753
Q ss_pred --cchhhhhhhhhhcCCCcchhhH
Q 000968 925 --VSVISAIRTGLLLAPGGEFAFV 946 (1207)
Q Consensus 925 --~~~real~lGL~La~rGe~alV 946 (1207)
++..+.+.++.+ +-||.+++.
T Consensus 383 ~k~~~~DQfimsyG-GLRGAiaF~ 405 (670)
T KOG1966|consen 383 VKLEFVDQFIMSYG-GLRGAIAFG 405 (670)
T ss_pred eeccccceeeeecC-Ccchhhhee
Confidence 345555544433 345554443
No 27
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.24 E-value=1.2e-09 Score=128.12 Aligned_cols=266 Identities=20% Similarity=0.239 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCc
Q 000968 652 GTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (1207)
Q Consensus 652 ~l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TS 725 (1207)
....+.+..+.++.|.+|+|+..+.+. +.++..+ .-++.++++|++ .|+.+..+.+..--. .+-..||
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-----IY~~~n~~~~~~~GW-gIPmATD 141 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-----IYFFLNADTPSQHGF-GIPMATD 141 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-----HHhheecCCCccCcc-ccccHHH
Confidence 346677788889999999998777554 3333332 334555555543 344433322221111 2334589
Q ss_pred HHHHHHHHHhcCCC-CChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 726 TAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGG 804 (1207)
Q Consensus 726 tAVVl~IL~elg~l-~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg 804 (1207)
++.++.++.=.|.- +......+++.+++||+.++++++++ ++.+..+.. +. ..+++++++
T Consensus 142 IAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF-------Yt~~i~~~~----L~----~a~~~~~~l---- 202 (438)
T PRK14856 142 IAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALF-------YTTNLKFAW----LL----GALGVVLVL---- 202 (438)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee-------cCCCCcHHH----HH----HHHHHHHHH----
Confidence 99888888655542 33445666788999999999877654 112222211 10 111111111
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccch----------------------
Q 000968 805 RLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF---------------------- 862 (1207)
Q Consensus 805 ~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~---------------------- 862 (1207)
+++ ++. +.++.-.| +.+.+..++....-|+|+.++.++.|+++|-.+.
T Consensus 203 -~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T PRK14856 203 -AVL----NRL-NVRSLIPY----LLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGA 272 (438)
T ss_pred -HHH----HHc-CCccccHH----HHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccc
Confidence 111 111 12222222 2344555667788999999999999999984210
Q ss_pred -----------------------hHHHHHHHHhHHh-HHHHHH-HHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHH
Q 000968 863 -----------------------SLQVESDIAPYRG-LLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVA 917 (1207)
Q Consensus 863 -----------------------~~~l~e~l~~~~~-~flplF-Fv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~ 917 (1207)
-+++++.++|... +.+|+| |...|..++.......-+..+++++.+++||+++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI~ 352 (438)
T PRK14856 273 LLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGIF 352 (438)
T ss_pred ccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHHH
Confidence 1345566677644 669999 999999997543322235567788889999999999
Q ss_pred HHHHhh----------CcchhhhhhhhhhcCCCcchhhHHHHHHH
Q 000968 918 LVGRLF----------GVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1207)
Q Consensus 918 l~~~l~----------g~~~real~lGL~La~rGe~alVLa~lal 952 (1207)
..+++. +++|++-+-+|+.-+..=++++.+...++
T Consensus 353 ~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF 397 (438)
T PRK14856 353 LITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAF 397 (438)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888764 45777766666543333445666666666
No 28
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.09 E-value=1.8e-08 Score=116.35 Aligned_cols=267 Identities=16% Similarity=0.195 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH
Q 000968 653 TKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST 726 (1207)
Q Consensus 653 l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TSt 726 (1207)
.+.+.+.-+.++.|.+|+|+..+.+. +.++..+ .-++.++++|.+ .|+.++.. +...-=-.+-..||+
T Consensus 57 ~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-----Iy~~~n~~-~~~~~GW~IP~ATDI 130 (383)
T PRK14854 57 MHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-----IYLSINHD-IKVINGWAIPSATDI 130 (383)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHHhhccC-CcccCccccccHHHH
Confidence 45677777888999999998777554 3333332 345556666543 23333322 111111123345888
Q ss_pred HHHHHHHHhcCCC-CChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 727 AVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGR 805 (1207)
Q Consensus 727 AVVl~IL~elg~l-~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~ 805 (1207)
+..+.++.=.|.- +....-..++.+++||+.++++.++. ++.+..+.. +. ...+.+.++
T Consensus 131 AFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlF-------Yt~~i~~~~----L~----~A~~~~~~l----- 190 (383)
T PRK14854 131 AFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIF-------YTKSLSLLS----LS----LGTLFILAM----- 190 (383)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee-------cCCCccHHH----HH----HHHHHHHHH-----
Confidence 8888877655442 33344445677999999999877654 112222211 10 011111111
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccc-----hhHHHHHHHHhHH-hHHHH
Q 000968 806 LLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GLLLG 879 (1207)
Q Consensus 806 ~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~-----~~~~l~e~l~~~~-~~flp 879 (1207)
++ +++..+-++.-.| +.+.+..++....-|+|+.++.++.|+++|..+ .-+++++.++|+. .+.+|
T Consensus 191 ~~----~nr~~~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 262 (383)
T PRK14854 191 II----CNRIFKINRSSVY----VVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILP 262 (383)
T ss_pred HH----HHHhcCCceehHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHH
Confidence 11 1222112222223 234455566778899999999999999999631 2357888888874 46689
Q ss_pred HH-HHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh----------CcchhhhhhhhhhcCCCcchhhHH
Q 000968 880 LF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVA 947 (1207)
Q Consensus 880 lF-Fv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~La~rGe~alVL 947 (1207)
+| |...|..++-..+.. .-+..+++++.++++|+++++..+++. +.+|++-+-+|+.-...=++++.+
T Consensus 263 lFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFI 342 (383)
T PRK14854 263 VFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFI 342 (383)
T ss_pred HHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 888999884322211 124566778889999999998887764 457777666665533444456666
Q ss_pred HHHHHh
Q 000968 948 FGEAVN 953 (1207)
Q Consensus 948 a~lal~ 953 (1207)
...++.
T Consensus 343 a~LAF~ 348 (383)
T PRK14854 343 GVLAFN 348 (383)
T ss_pred HHhhCC
Confidence 666663
No 29
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.08 E-value=1.6e-08 Score=118.34 Aligned_cols=263 Identities=20% Similarity=0.218 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH
Q 000968 653 TKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST 726 (1207)
Q Consensus 653 l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TSt 726 (1207)
...+.+.-+.++.|.+|+|+..+.+. +.++..+ .-++.++++|++ .|+.+....+..--. .+-..||+
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAl-----Iy~~~n~~~~~~~GW-gIPmATDI 137 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAA-----LYTALNAGGPGASGW-GVPMATDI 137 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCccCcc-ccccHHHH
Confidence 35667777788899999999877654 2233322 334555555543 333333222111111 23345899
Q ss_pred HHHHHHHHhcCCC-CChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 727 AVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGR 805 (1207)
Q Consensus 727 AVVl~IL~elg~l-~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~ 805 (1207)
+.++.+|.=.|.- +.......++.+++||+.++++.+++ ++.+..+.. +. ..++.+.++
T Consensus 138 AFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF-------Yt~~i~~~~----L~----~a~~~~~~l----- 197 (423)
T PRK14855 138 AFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALF-------YTSGLNLLA----LL----LAALTWALA----- 197 (423)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEee-------cCCCCCHHH----HH----HHHHHHHHH-----
Confidence 9888888766542 22345566788999999998876554 112222211 10 011111111
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccc-c----h------------------
Q 000968 806 LLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET-E----F------------------ 862 (1207)
Q Consensus 806 ~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~-~----~------------------ 862 (1207)
+++ ++. +-++.-.| +.+.+..++....-|+|+.++.++.|+++|-. + +
T Consensus 198 ~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
T PRK14855 198 LLA----GRL-GVTSLKIY----AVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGA 268 (423)
T ss_pred HHH----HHc-CCccccHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhH
Confidence 111 211 11222222 23445556677889999999999999999853 1 0
Q ss_pred ---------------hHHHHHHHHhHHh-HHHHHH-HHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhh--
Q 000968 863 ---------------SLQVESDIAPYRG-LLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF-- 923 (1207)
Q Consensus 863 ---------------~~~l~e~l~~~~~-~flplF-Fv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~-- 923 (1207)
.+++++.++|... +.+|+| |...|..++-.. .. +..+++++.+++||+++++..+++.
T Consensus 269 ~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvvGK~lGI~~~s~lavk 345 (423)
T PRK14855 269 RLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLLGKPLGVVGGAWLAVR 345 (423)
T ss_pred HHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1356667777655 469999 888999885332 22 4566778889999999999888764
Q ss_pred --------CcchhhhhhhhhhcCCCcchhhHHHHHHHh
Q 000968 924 --------GVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1207)
Q Consensus 924 --------g~~~real~lGL~La~rGe~alVLa~lal~ 953 (1207)
+++|++-+-+|+.-+..=++++.+...+++
T Consensus 346 l~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 346 LGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 457877666665533334456666666663
No 30
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.08 E-value=2.6e-08 Score=115.62 Aligned_cols=266 Identities=20% Similarity=0.210 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH
Q 000968 653 TKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST 726 (1207)
Q Consensus 653 l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TSt 726 (1207)
.+.+.+.-+.++.|.+|+|+..+.+. +.++..+ .-++.++++|++ .|+.+........-=-.+-..||+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~~~~~GWgIPmATDI 134 (389)
T PRK09560 60 LHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNPETLRGWAIPAATDI 134 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCcccCccccccHHHH
Confidence 35677777888999999999877654 3333332 345556666543 233332211110111122345888
Q ss_pred HHHHHHHHhcCC-CCChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 727 AVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGR 805 (1207)
Q Consensus 727 AVVl~IL~elg~-l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~ 805 (1207)
+..+.++.=.|. .+.......++.+++||+.++++.++. ++.+..+.. +. ...+.+.++
T Consensus 135 AFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~F-------Yt~~i~~~~----L~----~a~~~~~~l----- 194 (389)
T PRK09560 135 AFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALF-------YTSDLSLPA----LA----LAAIAIAVL----- 194 (389)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee-------cCCCCCHHH----HH----HHHHHHHHH-----
Confidence 888888865543 233345566788999999999877654 112222211 11 011111111
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccc-------hhHHHHHHHHhHHhHH-
Q 000968 806 LLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-------FSLQVESDIAPYRGLL- 877 (1207)
Q Consensus 806 ~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~-------~~~~l~e~l~~~~~~f- 877 (1207)
+++ ++. +.++.-.| +.+.+..++....-|+|+.++..+.|+++|..+ .-+++++.++|+..++
T Consensus 195 ~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~I 265 (389)
T PRK09560 195 FLL----NRL-GVTKLTPY----LIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAI 265 (389)
T ss_pred HHH----HHc-CCccchHH----HHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhh
Confidence 111 111 11222222 234455566677899999999999999999631 1356888899986655
Q ss_pred HHHH-HHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh----------CcchhhhhhhhhhcCCCcchhh
Q 000968 878 LGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAF 945 (1207)
Q Consensus 878 lplF-Fv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~La~rGe~al 945 (1207)
+|+| |...|..++-..+.. .-+..+++++.++++|+++++..+++. +.+|++-+-+|+.-...=++++
T Consensus 266 lPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 345 (389)
T PRK09560 266 LPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSL 345 (389)
T ss_pred HHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 889999884322322 124566778889999999999888764 4577776666654333344566
Q ss_pred HHHHHHH
Q 000968 946 VAFGEAV 952 (1207)
Q Consensus 946 VLa~lal 952 (1207)
.+...++
T Consensus 346 FIa~LAF 352 (389)
T PRK09560 346 FIGSLAF 352 (389)
T ss_pred HHHHhhc
Confidence 6666666
No 31
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.06 E-value=3.5e-08 Score=114.31 Aligned_cols=267 Identities=21% Similarity=0.257 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH----hchhhH--HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH
Q 000968 653 TKAIAEFGVVFLLFNIGLELSVERLS----SMKKYV--FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST 726 (1207)
Q Consensus 653 l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~i--l~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TSt 726 (1207)
...+.+.-+.++.|.+|+|+..+.+. +.++.. +.-++.++++|++ .|+.+....+...-=-.+-..||+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~~~~~~~~GWaIP~ATDI 134 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNYADPVTREGWAIPAATDI 134 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCccccccHHHH
Confidence 35667777888999999999887664 223332 2345555665543 233332211111111123345888
Q ss_pred HHHHHHHHhcCC-CCChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 727 AVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGR 805 (1207)
Q Consensus 727 AVVl~IL~elg~-l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~ 805 (1207)
+..+.++.=.|. .+.......++.+++||+.+++++++. ++.+..+.. +. ...+.+.++
T Consensus 135 AFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF-------Yt~~i~~~~----L~----~a~~~~~~l----- 194 (388)
T PRK09561 135 AFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALF-------YTSDLSMVS----LG----VAAVAIAVL----- 194 (388)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee-------cCCCccHHH----HH----HHHHHHHHH-----
Confidence 888887755543 233345566788999999999877654 112222211 10 011111111
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccc-----hhHHHHHHHHhHHhH-HHH
Q 000968 806 LLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYRGL-LLG 879 (1207)
Q Consensus 806 ~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~-----~~~~l~e~l~~~~~~-flp 879 (1207)
+++ ++. +.++.-.| +.+.+..++....-|+|+.++..+.|+++|... .-+++++.++|...+ .+|
T Consensus 195 ~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 265 (388)
T PRK09561 195 AVL----NLC-GVRRTSVY----ILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILP 265 (388)
T ss_pred HHH----HHc-CCccchHH----HHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHH
Confidence 111 111 11222222 234445566778899999999999999999631 235788889998655 699
Q ss_pred HH-HHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh----------CcchhhhhhhhhhcCCCcchhhHH
Q 000968 880 LF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVA 947 (1207)
Q Consensus 880 lF-Fv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~La~rGe~alVL 947 (1207)
+| |...|..++-..+.. .-+..+++++.+++||+++++..+++. +.+|++-.-+|+.-...=++++.+
T Consensus 266 lFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFI 345 (388)
T PRK09561 266 LFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFI 345 (388)
T ss_pred HHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 888999883222211 124556777889999999999887764 457777666665433333455555
Q ss_pred HHHHHh
Q 000968 948 FGEAVN 953 (1207)
Q Consensus 948 a~lal~ 953 (1207)
...+++
T Consensus 346 a~LAF~ 351 (388)
T PRK09561 346 ASLAFG 351 (388)
T ss_pred HHHhcC
Confidence 666663
No 32
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.99 E-value=3.6e-09 Score=122.34 Aligned_cols=269 Identities=22% Similarity=0.251 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCc
Q 000968 652 GTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (1207)
Q Consensus 652 ~l~~LaeLGLv~LLF~aGLEldl~~Lr----~~~k~il--~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TS 725 (1207)
..+.+.+.-+.++.|.+|+|+..+.+. +.++..+ .-++.++++|. +.|+.++...+...-=-.+-..||
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPa-----lIyl~~n~~~~~~~~GW~IP~ATD 129 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPA-----LIYLAFNAGGPEAAHGWAIPMATD 129 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTH-----HHHGGG--SSTTHHHHTSSSS---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHH-----HHHheeecCCCCcCceEEeccccc
Confidence 346677777888999999999877554 3333333 33444555554 334444443332233334456699
Q ss_pred HHHHHHHHHhcCCC-CChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 726 TAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGG 804 (1207)
Q Consensus 726 tAVVl~IL~elg~l-~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg 804 (1207)
++..+.++.=.|.- +.......++.+++||+.++++.++.- +.+..+. .+. ..++++.+.
T Consensus 130 IAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FY-------t~~i~~~----~L~----~a~~~~~~l---- 190 (378)
T PF06965_consen 130 IAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFY-------TDGISLL----WLL----LAAAALLLL---- 190 (378)
T ss_dssp HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HH----HHH----HHHHHHHHH----
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeee-------CCCCCHH----HHH----HHHHHHHHH----
Confidence 99999988755432 233446667889999999998877651 1121111 110 111111111
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccch---------hHHHHHHHHhHHh
Q 000968 805 RLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF---------SLQVESDIAPYRG 875 (1207)
Q Consensus 805 ~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~---------~~~l~e~l~~~~~ 875 (1207)
+++ ++. +.++...| +++.+..++....-|+|+.++.++.|+++|..+. -+++++.++|...
T Consensus 191 -~~l----~r~-~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~ 260 (378)
T PF06965_consen 191 -FVL----NRL-GVRSLWPY----LLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA 260 (378)
T ss_dssp -HHH----HHT-T---THHH----HHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred -HHH----HHC-CCceehHH----HHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence 111 111 11222222 2333445666678999999999999999996432 2477788888754
Q ss_pred -HHHHHH-HHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh----------CcchhhhhhhhhhcCCCcc
Q 000968 876 -LLLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGE 942 (1207)
Q Consensus 876 -~flplF-Fv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~La~rGe 942 (1207)
+.+|+| |...|..++-..+.. .-+..+++++.++++|+++++..+++. +++|++-.-+|+.-+..=+
T Consensus 261 ~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFT 340 (378)
T PF06965_consen 261 FVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFT 340 (378)
T ss_dssp HTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HH
T ss_pred hhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 559999 999999988655432 123344566788899999988877653 4567776666655444445
Q ss_pred hhhHHHHHHHhh
Q 000968 943 FAFVAFGEAVNQ 954 (1207)
Q Consensus 943 ~alVLa~lal~~ 954 (1207)
+++.+...+++.
T Consensus 341 mSLFIa~LAF~~ 352 (378)
T PF06965_consen 341 MSLFIAGLAFDD 352 (378)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHcCC
Confidence 566666666654
No 33
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.97 E-value=2.3e-07 Score=103.92 Aligned_cols=264 Identities=20% Similarity=0.219 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHh---chhh-H--HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH
Q 000968 655 AIAEFGVVFLLFNIGLELSVERLSS---MKKY-V--FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1207)
Q Consensus 655 ~LaeLGLv~LLF~aGLEldl~~Lr~---~~k~-i--l~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAV 728 (1207)
-+.+--+.++.+.+|+|+..+.+.. +++. + ...++.++++|.+ .|+++....+...-=-++-+.|+++.
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n~~~p~~~~GWaIP~ATDiAF 139 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALNAGDPATLEGWAIPMATDIAF 139 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----HhheeecCChhhhcCcCcccHHHHHH
Confidence 4444456677889999998887762 2222 2 2234445555543 34444444443333334556788888
Q ss_pred HHHHHHhcCC-CCChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000968 729 VLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLL 807 (1207)
Q Consensus 729 Vl~IL~elg~-l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~~~~~~i~~~L~~~ll~~il~iil~lllg~~l 807 (1207)
++.++.-+|- .++..--..++.+++||+.++++.++.- +.+..+. .++ ...+++.+++++
T Consensus 140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY-------t~~Ls~~----al~----~a~~~i~vL~~l---- 200 (390)
T COG3004 140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY-------TTDLSMA----ALG----IAALAIAVLAVL---- 200 (390)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh-------cCCccHH----HHH----HHHHHHHHHHHH----
Confidence 8887765542 3445555667889999999988776541 1122221 111 111111111111
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccc-----chhHHHHHHHHhHHh-HHHHHH
Q 000968 808 LRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET-----EFSLQVESDIAPYRG-LLLGLF 881 (1207)
Q Consensus 808 lrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~-----~~~~~l~e~l~~~~~-~flplF 881 (1207)
+++.-++- .. .+++....+.....-|+|..++..+.|+++|-. ..-+++++.+.|... +.+|+|
T Consensus 201 -----N~~~v~~l-~~----Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlF 270 (390)
T COG3004 201 -----NRLGVRRL-SP----YLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLF 270 (390)
T ss_pred -----HHhCchhh-hH----HHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHH
Confidence 22211111 11 123333344445678999999999999999932 355788888999754 558999
Q ss_pred -HHHHcCccC---hhhhccchhhHHHHHHHHHHHHHHHHHHHHHhh----------CcchhhhhhhhhhcCCCcchhhHH
Q 000968 882 -FMTVGMSID---PKLLLSNFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVA 947 (1207)
Q Consensus 882 -Fv~IGm~Id---l~~L~~~~~~illlllllll~K~l~v~l~~~l~----------g~~~real~lGL~La~rGe~alVL 947 (1207)
|...|.++. .+.+.. ++.+++++.++++|+++++..++.. +.+|++-..+++.-...=+.++.+
T Consensus 271 aFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI 348 (390)
T COG3004 271 AFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFI 348 (390)
T ss_pred HHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 999998876 444433 4456677888999999999888764 457777655554433333445555
Q ss_pred HHHHHhh
Q 000968 948 FGEAVNQ 954 (1207)
Q Consensus 948 a~lal~~ 954 (1207)
...++..
T Consensus 349 ~~LAf~~ 355 (390)
T COG3004 349 ASLAFGS 355 (390)
T ss_pred HHHhcCC
Confidence 5555543
No 34
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.08 E-value=0.00052 Score=78.39 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHhhCc
Q 000968 847 ALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLFGV 925 (1207)
Q Consensus 847 ~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~-~~~illlllllll~K~l~v~l~~~l~g~ 925 (1207)
++=+++.|++++|.. +.+.+.+.+-..+.+|+|-+..|+.+|++.+... +..++ +.++.++.-.+..+...+++|.
T Consensus 169 lilpILiGmilGNld--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIl-L~v~vv~~t~~~~~~i~rllg~ 245 (312)
T PRK12460 169 ALLPLVLGMILGNLD--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGIL-LGVLVTIVTGFFNIFADRLVGG 245 (312)
T ss_pred HHHHHHHHHHHhccc--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHhCC
Confidence 556788899999943 2344566666667899999999999999988764 33333 3333344445556666688888
Q ss_pred chhhhhhhh--hhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhh
Q 000968 926 SVISAIRTG--LLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1207)
Q Consensus 926 ~~real~lG--L~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~ 983 (1207)
+.+.++.++ .+-+.-| .+.+.+.... ..-..+.....+..++++|.+++|++..|.
T Consensus 246 ~~~~g~li~stAGnAIcg-pAAVaAadP~-~~~~~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 246 TGIAGAAASSTAGNAVAT-PLAIAAADPS-LAPVAAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred ChhHHHHHHHHhhHHHHH-HHHHHHhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776666 2211111 1111111111 111122222334556788999999998753
No 35
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.02 E-value=0.00082 Score=76.55 Aligned_cols=275 Identities=19% Similarity=0.219 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhccccccccc---Cc-hhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000968 629 VLGYLAAGILIGPYGLSIIR---HV-HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1207)
Q Consensus 629 IVGyLLaGILLGP~gLglI~---~~-~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~ 704 (1207)
++.-++.|.++..+..+..+ .. ..+..=+..-+.+++|..|-++|++...+..|+-..+-+.-+++.+ +++++..
T Consensus 15 mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~-~lgl~~~ 93 (314)
T PF03812_consen 15 MVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGA-LLGLLVG 93 (314)
T ss_pred eHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHH-HHHHHHH
Confidence 45556677777654444332 11 1111112334567889999999999998888887777666666654 4555555
Q ss_pred HHhCCC--------hHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCC
Q 000968 705 FVSGLP--------GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGG 776 (1207)
Q Consensus 705 ~llGls--------~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~li~~la~~~s~g~ 776 (1207)
.++|.. ...++.+-++++.+...+-+.+..+.|- +.+ +-+.+...++|.-.+.++
T Consensus 94 ~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D--~gA~~i~sl~~GPf~tMl-------------- 156 (314)
T PF03812_consen 94 KFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EED--VGAFSILSLNDGPFFTML-------------- 156 (314)
T ss_pred HHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHH--hHHHHHHHhhhhHHHHHH--------------
Confidence 555543 2234555555666667777777777654 111 111222222222111111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHH
Q 000968 777 VGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA--RAGLSMALGAFLAG 854 (1207)
Q Consensus 777 ~~~~~i~~~L~~~ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae--~lGLS~~LGAFvAG 854 (1207)
+++.+.++. +.-+=..+=+++.|
T Consensus 157 -------------------------------------------------------~LG~sG~a~ip~~~lv~~llP~iiG 181 (314)
T PF03812_consen 157 -------------------------------------------------------ALGASGLANIPWMSLVAALLPIIIG 181 (314)
T ss_pred -------------------------------------------------------HHhhccccCCCHHHHHHHHHHHHHH
Confidence 111111110 00011224467888
Q ss_pred HhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhh-Ccchhhhhh
Q 000968 855 LLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF-GVSVISAIR 932 (1207)
Q Consensus 855 LvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~-g~~~real~ 932 (1207)
++++|-+ +++.+.+.+-..+++|+|-..+|..+|+..+.. ....+++.++..+ .-....++.-++. |-+-.
T Consensus 182 ~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~-vtg~~~~~~dr~i~~~~g~---- 254 (314)
T PF03812_consen 182 MILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVV-VTGIPLYLADRLILKGNGV---- 254 (314)
T ss_pred HHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHH-HHhHHHHHHHHHHcCCCCc----
Confidence 8898864 355566777788999999999999999998876 3333332222222 2222344444442 22211
Q ss_pred hhhhcC-CCcchhhHHHHHHHhhc---cchhhhHHHHHHHHHHHHHhHHHHHhhh
Q 000968 933 TGLLLA-PGGEFAFVAFGEAVNQG---IMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1207)
Q Consensus 933 lGL~La-~rGe~alVLa~lal~~g---lIs~el~siLvlvvvlS~lItPlL~~~~ 983 (1207)
.|+..+ ..|--..+.+.++.-.. -..+..-..+..++++|.+++|++..|.
T Consensus 255 aG~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~ 309 (314)
T PF03812_consen 255 AGAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWW 309 (314)
T ss_pred eeehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122211 11111111122221111 1112223445567889999999998754
No 36
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.02 E-value=0.006 Score=72.43 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=63.1
Q ss_pred HHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 000968 849 GAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVI 928 (1207)
Q Consensus 849 GAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~r 928 (1207)
-....|++..-++..+.+ .--..+..+++-+||..+|+..|+..+.. -+.++++.++.+.+-.+..+..++++|+++.
T Consensus 245 ~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~ 322 (378)
T PF05684_consen 245 TVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLFKIDLF 322 (378)
T ss_pred HHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 334445554444444333 33445677889999999999999999887 5555555566677888889999999999997
Q ss_pred hhhhhhhhcCCCcchh
Q 000968 929 SAIRTGLLLAPGGEFA 944 (1207)
Q Consensus 929 eal~lGL~La~rGe~a 944 (1207)
+....+.. +..|-.+
T Consensus 323 ~~~vAS~A-nIGGpaT 337 (378)
T PF05684_consen 323 ELLVASNA-NIGGPAT 337 (378)
T ss_pred HHHHHhhc-ccCCcch
Confidence 75544432 4444333
No 37
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.74 E-value=0.027 Score=66.73 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=55.4
Q ss_pred hcchHHHHHHHHHHhhcccc----hhHHHH-HHHHhHHhHHHHHHHHHHcCccChhhhccchhhHH-HHHHHHHHHHHHH
Q 000968 842 AGLSMALGAFLAGLLLAETE----FSLQVE-SDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIT-GALGLLIGGKTIL 915 (1207)
Q Consensus 842 lGLS~~LGAFvAGLvLsn~~----~~~~l~-e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~il-llllllll~K~l~ 915 (1207)
+.++..+++++.|+++.|.- ..+ +. +.++.+.++.+-+|-+..=|++++..+.+.+..++ .+++-.++.-+..
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~-id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYK-IDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCccc-CCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999741 111 22 23344566667766666667888888877553333 3333344444456
Q ss_pred HHHHHHhhCcchhhhh
Q 000968 916 VALVGRLFGVSVISAI 931 (1207)
Q Consensus 916 v~l~~~l~g~~~real 931 (1207)
.++..|++|-++..+.
T Consensus 324 ~fv~fr~~gkdydaav 339 (368)
T PF03616_consen 324 YFVTFRVMGKDYDAAV 339 (368)
T ss_pred HHHhhhhhCCChhHHH
Confidence 6777788888874433
No 38
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.61 E-value=0.055 Score=64.77 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=59.6
Q ss_pred hcchHHHHHHHHHHhhcccc----hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHH-HHHHHHHHH
Q 000968 842 AGLSMALGAFLAGLLLAETE----FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGL-LIGGKTILV 916 (1207)
Q Consensus 842 lGLS~~LGAFvAGLvLsn~~----~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illllll-lll~K~l~v 916 (1207)
+.++..+++++.|+++.|.- ..+-..+.++.+.++.+-+|-+..=|++++..+.+.+..+++++++ .++.-+...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999841 2222334556677888888888888899999988866544443333 333333555
Q ss_pred HHHHHhhCcchhhhhh
Q 000968 917 ALVGRLFGVSVISAIR 932 (1207)
Q Consensus 917 ~l~~~l~g~~~real~ 932 (1207)
|+..+.+|-+ .|+-.
T Consensus 323 fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHhHHhccch-HHHHH
Confidence 6677777766 44443
No 39
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.53 E-value=0.00012 Score=76.57 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=65.7
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+++|+|.|++|...++.|.+.|..+++|+ |+..+.+...+... .+...+++.+++.++.|+++|+|++.|..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~-----~~~~~~~~~dl~~a~lViaaT~d~e~N~~ 86 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYIT-----WKQKTFSNDDIKDAHLIYAATNQHAVNMM 86 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcE-----EEecccChhcCCCceEEEECCCCHHHHHH
Confidence 469999999999999999999999999995 44444444332111 24577788899999999999999999999
Q ss_pred HHHHHHHh
Q 000968 1090 TVWALSKY 1097 (1207)
Q Consensus 1090 i~l~aR~l 1097 (1207)
++..+|+.
T Consensus 87 i~~~a~~~ 94 (157)
T PRK06719 87 VKQAAHDF 94 (157)
T ss_pred HHHHHHHC
Confidence 99999875
No 40
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.48 E-value=0.23 Score=58.23 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCchHHHHHHHHHhhccccc-ccccC-ch----hHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHH
Q 000968 625 GGSPVLGYLAAGILIGPYGL-SIIRH-VH----GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (1207)
Q Consensus 625 ~lP~IVGyLLaGILLGP~gL-glI~~-~~----~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vl 698 (1207)
++++++--++.|+++|+... +.-+. .. ..+.+.++|+++ .|.++++.++.+.+...+.+....+..++++
T Consensus 30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTFFL 105 (335)
T ss_pred CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 78888888999999998532 11111 11 224667777765 4888999999999988877766666655544
Q ss_pred HHHHHHHHhCCChHHHHHHhhccccCcHHHHHH
Q 000968 699 VGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (1207)
Q Consensus 699 vglll~~llGls~~~ALlLGailS~TStAVVl~ 731 (1207)
..++..-.+|++...++++|+..+....+.++.
T Consensus 106 ~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 444443467999999999988766655444433
No 41
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.46 E-value=0.017 Score=67.67 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=67.6
Q ss_pred HHHHHHHH-HHHHHHhc-----chHHHHHHHHHHhhccc----chhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccc
Q 000968 828 TLLVILGT-SLLTARAG-----LSMALGAFLAGLLLAET----EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN 897 (1207)
Q Consensus 828 ~Lal~Lg~-a~Lae~lG-----LS~~LGAFvAGLvLsn~----~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~ 897 (1207)
.+++++++ +++.+.++ ++..+++++.|+++.|. ...+-..+.++.+.++-+.+|-.+.=|++.+..+.+-
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l 305 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL 305 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34444433 34455444 67889999999999984 1222334455666777788887777788888777653
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhh
Q 000968 898 F-PVITGALGLLIGGKTILVALVGRLFGVSVISAIRT 933 (1207)
Q Consensus 898 ~-~~illlllllll~K~l~v~l~~~l~g~~~real~l 933 (1207)
+ +.++++++-.++.-+...+...|..|-++..+...
T Consensus 306 ~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~ 342 (404)
T COG0786 306 ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLA 342 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHh
Confidence 3 44444444444455566777788888887766653
No 42
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.42 E-value=0.062 Score=62.20 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=74.8
Q ss_pred cCCCchHHHHHHHHHhhcccccccccCc-h----hHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHH
Q 000968 623 IPGGSPVLGYLAAGILIGPYGLSIIRHV-H----GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1207)
Q Consensus 623 l~~lP~IVGyLLaGILLGP~gLglI~~~-~----~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~v 697 (1207)
.+.+++++--|+.|+++|+..++.-+.. . ..+.+.++|+++ .|.++++..+.+.+...+....+.+.+++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3477888888999999997333332211 1 124666777665 588899999999999877777777777665
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHH
Q 000968 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVL 733 (1207)
Q Consensus 698 lvglll~~llGls~~~ALlLGailS~TStAVVl~IL 733 (1207)
+..++...++|++...++++|+..+......+..+-
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 544444367899999999999887776655444433
No 43
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.41 E-value=0.32 Score=56.97 Aligned_cols=74 Identities=28% Similarity=0.361 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCch--HHH-HHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHh
Q 000968 603 LFDVLWLLLASVIFVPIFQKIPGGSP--VLG-YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1207)
Q Consensus 603 Ll~l~lLLl~A~ll~~L~~Rl~~lP~--IVG-yLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~ 679 (1207)
...+++.++++.+++.++..+ ++|. ++| -+++|++.+-.+.. ....+.+...|.+++=-.+|..+..+.+..
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~-~vPa~~mlG~~l~a~~v~~~~~~~----l~~P~~l~~~~q~ilG~~ig~~~t~s~l~~ 82 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLL-HVPAAWMLGAPLLAGIVAGLRGLT----LPLPRGLFKAGQVILGIMIGASLTPSVLDT 82 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhcccc----ccCChHHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 466778888899999999988 7774 567 88888888843322 234478888999999999999999887764
Q ss_pred ch
Q 000968 680 MK 681 (1207)
Q Consensus 680 ~~ 681 (1207)
..
T Consensus 83 l~ 84 (352)
T COG3180 83 LK 84 (352)
T ss_pred HH
Confidence 43
No 44
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.16 E-value=0.21 Score=58.20 Aligned_cols=146 Identities=20% Similarity=0.222 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcc--hHHHHHHHHHHhhcccc-hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc---chhhHHH
Q 000968 830 LVILGTSLLTARAGL--SMALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVITG 903 (1207)
Q Consensus 830 al~Lg~a~Lae~lGL--S~~LGAFvAGLvLsn~~-~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~---~~~~ill 903 (1207)
.+++..++++..+++ ...+|+++.+.++.-.. ....+.. .+..+-.-+.=.++|.+++...+.. .++..++
T Consensus 162 ~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~---~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~ 238 (318)
T PF05145_consen 162 LAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPP---WLVNAAQVLIGASIGSRFTRETLRELRRLLPPALL 238 (318)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 334444555555554 35566666665555321 0001111 1122222233345788888766554 2333344
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhh
Q 000968 904 ALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1207)
Q Consensus 904 lllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~ 983 (1207)
..++.+..-.+..++..++.++++.++++ ..+|.|.-++.+.+.....+. .-+...=++-.++-.++.|++.++.
T Consensus 239 ~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~--~~V~~~q~~Rl~~v~~~~p~~~r~~ 313 (318)
T PF05145_consen 239 STLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADV--AFVAAHQVVRLLFVLLLAPFIARWL 313 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677788888999999877553 358999888877666554432 1111112223344445678777654
No 45
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.06 E-value=0.019 Score=65.39 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHhhC-
Q 000968 847 ALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLFG- 924 (1207)
Q Consensus 847 ~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~-~~~illlllllll~K~l~v~l~~~l~g- 924 (1207)
++=+++.|++++|-+ +++.+.+.+-...++|+|-..+|..+|++.+... ...+++.+. .++.-....++.-++.+
T Consensus 174 ~ilPlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~-v~~vtG~~~~~~dr~~~g 250 (314)
T TIGR00793 174 AVLPFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVS-VIILTGIPLILADKFIGG 250 (314)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHH-HHHHHhHHHHHHHHHhcC
Confidence 345678889999864 3455666777789999999999999999888653 333332222 22223344555555553
Q ss_pred cchhhhhhhhhhcCCCcchhhHHHHHHHhhcc---chhhhHHHHHHHHHHHHHhHHHHHhhh
Q 000968 925 VSVISAIRTGLLLAPGGEFAFVAFGEAVNQGI---MSSQLSSLLFLLVGISMALTPWLAAGG 983 (1207)
Q Consensus 925 ~~~real~lGL~La~rGe~alVLa~lal~~gl---Is~el~siLvlvvvlS~lItPlL~~~~ 983 (1207)
-+....+..+ +.-|--....+.++.-... ..+.....+..++++|.+++|++..|.
T Consensus 251 ~~g~aG~A~s---stAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~ 309 (314)
T TIGR00793 251 GDGTAGIAAS---SSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWW 309 (314)
T ss_pred CCCchhhHHH---HHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211112111 1112211122222211111 111222334456788999999998754
No 46
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.96 E-value=0.0045 Score=67.18 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=87.1
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-CCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
.+++|+|+|.+|+.+++.|.+.|.++++.|.++++.+.+... +...+ +. ++.+ ..++|.++-+.... .
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~l~----~~~~Dv~vp~A~~~---~ 97 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV--AP--EEIY----SVDADVFAPCALGG---V 97 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hhhc----cccCCEEEeccccc---c
Confidence 369999999999999999999999999999999988777554 43322 21 2222 23688887444333 3
Q ss_pred HHHHHHHHhCCCceEEEeeCC----hHHHHHHHhCCCCeeecCCcHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000968 1089 RTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATAVVPETLEP-SLQLAAAVLAQAKLPASEIAATINEF 1157 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~d----~~~~~~L~~aGAd~VI~p~~ea-al~La~~iL~~lg~~~~ei~~~i~~~ 1157 (1207)
.....++++..+ .|+..+++ +++.+.|++.|+.+ .|.+.+ +-.+....+...+-.++++...++.+
T Consensus 98 I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~--~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~~ 168 (200)
T cd01075 98 INDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILY--APDYVVNAGGLINVADELYGGNEARVLAKVEAI 168 (200)
T ss_pred cCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE--eCceeeeCcCceeehhHHhCCcHHHHHHHHHHH
Confidence 333445666654 57777887 89999999999763 333333 22333334444443454555555554
No 47
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.88 E-value=1.1 Score=52.10 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhchhh
Q 000968 654 KAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (1207)
Q Consensus 654 ~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~ 683 (1207)
+....+++..++|..|+.++.+++++..+.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~ 59 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRN 59 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 577888899999999999999999865443
No 48
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.87 E-value=1.1 Score=52.21 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=77.5
Q ss_pred HHHHHHHHHHH--hcCCCchHHHHHHHHHhhcccccccccCc----hhHHHHHHHHHHHHHHHHhhccChhHHHhchhhH
Q 000968 611 LASVIFVPIFQ--KIPGGSPVLGYLAAGILIGPYGLSIIRHV----HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYV 684 (1207)
Q Consensus 611 l~A~ll~~L~~--Rl~~lP~IVGyLLaGILLGP~gLglI~~~----~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~i 684 (1207)
..++.++..+. .. ++|+.+--|+.|+++|.+.-...... ..-+.+.++|++++ |.++++..+...+...
T Consensus 21 ~~a~~l~~~~~~~~~-~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLl----G~~ltl~~i~~~G~~~ 95 (334)
T COG2855 21 GLAMLLGAFFFSIHL-GLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLL----GFRLTLSDIADVGGSG 95 (334)
T ss_pred HHHHHHhchHHhhhc-CchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHH----cceeeHHHHHHcCccH
Confidence 33444443332 34 67889999999999994321111111 23367777887664 8889999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHH
Q 000968 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQV 732 (1207)
Q Consensus 685 l~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~I 732 (1207)
+.+....+..+++ +++.+.-++|+|+..++++|+..+....+.++.+
T Consensus 96 v~~~~~~l~~t~~-~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~ 142 (334)
T COG2855 96 VLIIAITLSSTFL-FAYFLGKLLGLDKKLALLIAAGSSICGASAIAAT 142 (334)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHh
Confidence 7776666655554 4444444789999999999988777665544443
No 49
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.80 E-value=0.36 Score=56.02 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHhc---hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH
Q 000968 653 TKAIAEFGVVFLLFNIGLELSVERLSSM---KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA 727 (1207)
Q Consensus 653 l~~LaeLGLv~LLF~aGLEldl~~Lr~~---~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStA 727 (1207)
+.....+++.++||..|+.++.+.+++. ++..+.....++++.-+ +++...+++.+ +.-+..|.++..+.|.
T Consensus 36 ~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl-la~~~~~~~~l--~~~l~~Gl~ll~~~Pg 110 (319)
T COG0385 36 LGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL-LALLLAKLFPL--PPELAVGLLLLGCCPG 110 (319)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHhHHheeeCCC
Confidence 3435588999999999999999998854 44444444444444332 34443344444 4445566555554443
No 50
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.70 E-value=0.003 Score=68.74 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=62.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH-HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e-~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
.+++|+|.|.+|...++.|.+.|..+++|+++.. ....+...+.-.+. +..++..++..++.||++|+|++.|.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~-----~~~~~~~~l~~adlViaaT~d~elN~ 85 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWK-----QKEFEPSDIVDAFLVIAATNDPRVNE 85 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEE-----ecCCChhhcCCceEEEEcCCCHHHHH
Confidence 4799999999999999999999999999987642 33333333321221 23455678899999999999999999
Q ss_pred HHHHHHHH
Q 000968 1089 RTVWALSK 1096 (1207)
Q Consensus 1089 ~i~l~aR~ 1096 (1207)
.+...+++
T Consensus 86 ~i~~~a~~ 93 (202)
T PRK06718 86 QVKEDLPE 93 (202)
T ss_pred HHHHHHHh
Confidence 99888854
No 51
>PRK04148 hypothetical protein; Provisional
Probab=96.56 E-value=0.0079 Score=61.45 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=75.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+++.+|.| +|..++..|.+.|..|+++|.|++.++.++..+.+++.+|..+++.=. -+.|+++...-+.++---.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~---y~~a~liysirpp~el~~~ 93 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI---YKNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH---HhcCCEEEEeCCCHHHHHH
Confidence 469999999 999999999999999999999999999999999999999999886532 2467888887777766667
Q ss_pred HHHHHHHhCCCceE
Q 000968 1090 TVWALSKYFPNVKT 1103 (1207)
Q Consensus 1090 i~l~aR~l~P~i~I 1103 (1207)
+...+|+.+.++.|
T Consensus 94 ~~~la~~~~~~~~i 107 (134)
T PRK04148 94 ILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHcCCCEEE
Confidence 77778887765433
No 52
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.55 E-value=0.066 Score=67.73 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHH
Q 000968 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV 692 (1207)
Q Consensus 613 A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~v 692 (1207)
.+..+.+...+ ++++++|-.++|++++.+-+.- .-...++.+..+.+++++..+|+.+|+..+...+..++.+.++.+
T Consensus 228 v~~~a~la~~~-Gls~~lGAFlAGl~l~~~~~~~-~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~ 305 (621)
T PRK03562 228 VFGFGLLMEEV-GLSMALGAFLAGVLLASSEYRH-ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFL 305 (621)
T ss_pred HHHHHHHHHHh-CccHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 33344566777 9999999999999998532110 012345566778888888899999999988766555444433332
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-H-HHHHHHHhcCCCCCh
Q 000968 693 LVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-A-VVLQVLQERGESTSR 742 (1207)
Q Consensus 693 llt~vlvglll~~llGls~~~ALlLGailS~TSt-A-VVl~IL~elg~l~s~ 742 (1207)
+.=+ +..++...++|+++..++.+|..++.-.. + ++..+-.+.+.++..
T Consensus 306 ~~K~-~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~ 356 (621)
T PRK03562 306 AIKI-AMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPE 356 (621)
T ss_pred HHHH-HHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHH
Confidence 2222 23334445679999999999998875433 2 344444555555443
No 53
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.51 E-value=0.34 Score=56.78 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhccChhHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHH-HHHH
Q 000968 659 FGVVFLLFNIGLELSVERLSSMKK---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVL-QVLQ 734 (1207)
Q Consensus 659 LGLv~LLF~aGLEldl~~Lr~~~k---~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl-~IL~ 734 (1207)
+++.++||-.|++++++++++..+ .++..-+.++++.-++...+.+.+++.++. +.+|.++..+.|..+. .++.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T 124 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWN 124 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHH
Confidence 456689999999999998886544 344444445544433222333334465543 6667666555554333 3334
Q ss_pred hcCCCCChhhHHHH--HHHhhhhHHHHHHH
Q 000968 735 ERGESTSRHGRATF--SVLLFQDLAVVVLL 762 (1207)
Q Consensus 735 elg~l~s~~Grl~L--svsl~nDi~aIvll 762 (1207)
... .|...+ +.+.++-+.++++.
T Consensus 125 ~lA-----kGnvalsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 125 QLA-----KGDPEYTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 332 233343 33556666665555
No 54
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.47 E-value=0.0056 Score=64.36 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=64.8
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+++|+|||.+|+-+|+.|+..|..|+|.|.||-+.-++.-.|+.+.. ++++ +..+|.+|.+|.+. ++.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~vtaTG~~--~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFVTATGNK--DVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEEE-SSSS--SSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEEECCCCc--ccc
Confidence 369999999999999999999999999999999988888888988752 3333 57899999998874 333
Q ss_pred HHHHHHHhCCCceEEEeeC---ChHHHHHHHhCCC
Q 000968 1090 TVWALSKYFPNVKTFVRAH---DIDHGLNLEKAGA 1121 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~---d~~~~~~L~~aGA 1121 (1207)
.....+.+-.. -|++-+- ++-+...|++.+.
T Consensus 93 ~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 93 TGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp -HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred CHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 33344455544 4555333 2336666776643
No 55
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.43 E-value=0.091 Score=66.23 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHH
Q 000968 614 VIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL 693 (1207)
Q Consensus 614 ~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vl 693 (1207)
+..+.+...+ |+++++|-.++|++++.+-..- .-...++.+..+.+.++...+|+.+|+..+...+..++.+.++.++
T Consensus 226 l~~a~l~~~~-Gls~~LGAFlaGl~l~~s~~~~-~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~ 303 (601)
T PRK03659 226 LGSALFMDAL-GLSMALGTFIAGVLLAESEYRH-ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVA 303 (601)
T ss_pred HHHHHHHHHh-CccHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHH
Confidence 3344566677 9999999999999998642110 0112456677888899999999999999988776554443333322
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-H-HHHHHHHhcCCCCC
Q 000968 694 VTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-A-VVLQVLQERGESTS 741 (1207)
Q Consensus 694 lt~vlvglll~~llGls~~~ALlLGailS~TSt-A-VVl~IL~elg~l~s 741 (1207)
+=+ +..++...++|++|..++.+|..++.... + ++..+-.+.+.++.
T Consensus 304 ~K~-~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~ 352 (601)
T PRK03659 304 VKG-LVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQG 352 (601)
T ss_pred HHH-HHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCH
Confidence 222 23334445679999999999988776543 2 33344445555443
No 56
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.40 E-value=2.7 Score=48.38 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccChhHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-HHHHHHHH
Q 000968 659 FGVVFLLFNIGLELSVERLSSMKK---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-AVVLQVLQ 734 (1207)
Q Consensus 659 LGLv~LLF~aGLEldl~~Lr~~~k---~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TSt-AVVl~IL~ 734 (1207)
..+.++||..|+.++++++++..+ ......+.+.++.-++. +.+..+++.+... ..|.++..+.| +....++.
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~~~~--~~glvL~~~~P~~~~s~v~t 88 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLPPEL--AVGVLIVGCCPGGTASNVFT 88 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHH--HHHHHheeeCCCchHHHHHH
Confidence 348889999999999999987665 23333333444433322 3333456766433 33333333333 33334454
Q ss_pred hcCCCCChhhHHHHHHHhhhhHHHHHHH
Q 000968 735 ERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1207)
Q Consensus 735 elg~l~s~~Grl~Lsvsl~nDi~aIvll 762 (1207)
..--.+.+ ...+...++-+.+++.+
T Consensus 89 ~~~~gn~~---la~~~~~~stlls~vt~ 113 (286)
T TIGR00841 89 YLLKGDMA---LSISMTTCSTLLALGMM 113 (286)
T ss_pred HHhCCCHh---hhhHHHHHHHHHHHHHH
Confidence 44322333 33333444444444443
No 57
>COG0679 Predicted permeases [General function prediction only]
Probab=96.38 E-value=2.4 Score=49.30 Aligned_cols=133 Identities=23% Similarity=0.237 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhhcc--cchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccc-hhhHHHHHHHHHHHHHHHHHHHHH
Q 000968 845 SMALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGR 921 (1207)
Q Consensus 845 S~~LGAFvAGLvLsn--~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~-~~~illlllllll~K~l~v~l~~~ 921 (1207)
+|.+=+++.|+++.. -+..+.+.+.++.+.+.-.|+-++.+|+.++....... ++.+......-++.-++..+...+
T Consensus 168 nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~ 247 (311)
T COG0679 168 NPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAK 247 (311)
T ss_pred CcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666664 23455677777788889999999999999998544332 333333334457778888888888
Q ss_pred hhCcchhhhhhhhhh--cCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHh
Q 000968 922 LFGVSVISAIRTGLL--LAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1207)
Q Consensus 922 l~g~~~real~lGL~--La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~ 981 (1207)
.++++.-+.. +... ..|.+....+ .+.+.+.-.+...+.+.+...++.+..|.+..
T Consensus 248 ~~~l~~~~~~-v~vl~~a~P~A~~~~v---~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 248 LLGLSGLALQ-VLVLLSAMPTAVNAYV---LARQYGGDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HcCCChHHHH-HHHHHhhCcHHhHHHH---HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888655431 1111 2454443333 34445554555566666677777777766543
No 58
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.32 E-value=0.02 Score=59.97 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=74.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
+|=++|.|.+|..+++.|.+.|+++.+.|+++++.+.+.+.| ...-.+-.+..+ +++.|+++++++..-..+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g---~~~~~s~~e~~~-----~~dvvi~~v~~~~~v~~v 74 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG---AEVADSPAEAAE-----QADVVILCVPDDDAVEAV 74 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT---EEEESSHHHHHH-----HBSEEEE-SSSHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh---hhhhhhhhhHhh-----cccceEeecccchhhhhh
Confidence 567899999999999999999999999999999999998887 222233344444 448999999988665555
Q ss_pred HHH---HHHhCCCceEEEeeCC--hH----HHHHHHhCCCCeeecCCc
Q 000968 1091 VWA---LSKYFPNVKTFVRAHD--ID----HGLNLEKAGATAVVPETL 1129 (1207)
Q Consensus 1091 ~l~---aR~l~P~i~IIaRa~d--~~----~~~~L~~aGAd~VI~p~~ 1129 (1207)
... +..+.+. ++++-..+ ++ -.+.+.+.|+.++=.|-.
T Consensus 75 ~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 75 LFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp HHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeeeee
Confidence 554 3334444 55554443 33 344456779888776654
No 59
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.24 E-value=0.023 Score=64.50 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=73.2
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCC----HHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS----REVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd----~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
++.|+|.|.+|..++..|.+.|.+|+++++++++.+..+..|..+-.|+... ...... ++.+|.+++++.....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~~~~ 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKAYQL 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCEEEEecccccH
Confidence 4789999999999999999999999999999998888877776441222110 011222 3789999999988765
Q ss_pred hHHHHHHHHHhCCCceEEEeeCChHHHHHHHh
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~ 1118 (1207)
.-.+........++..|+...+...+.+.+.+
T Consensus 80 ~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 80 PAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 44444444445566667777766555444443
No 60
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.22 E-value=3.1 Score=48.67 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhccccccc---cc--CchhHHHHHHHHHHHHHHHHhhccChhHHHhchhh---HHHHHHHHHHHHHHHHH
Q 000968 629 VLGYLAAGILIGPYGLSI---IR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVVVG 700 (1207)
Q Consensus 629 IVGyLLaGILLGP~gLgl---I~--~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~---il~Lg~l~vllt~vlvg 700 (1207)
+.-.+++|+.+|-+..++ +. +...++.-..+++.+.|+-.=+++|++++++..+. ....-+..+++.-+...
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~ 99 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMF 99 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 455677788888554442 22 23345677788899999999999999999866543 33334445555555555
Q ss_pred HHHHHHhCCChHHHHHHhhccccCcH----HHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 000968 701 LVAHFVSGLPGPASIVIGNGLALSST----AVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1207)
Q Consensus 701 lll~~llGls~~~ALlLGailS~TSt----AVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~li~~l 768 (1207)
.+++++++.-+ .+..|.++..-.| ..+-.=|..- --..++..-.+||++.++++..+..+
T Consensus 100 ~la~~fl~~~p--ey~~GlILlglApC~aMVivw~~La~G------d~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 100 ALAWFFLPDEP--EYRAGLILLGLAPCIAMVIVWSGLAKG------DRELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHhCCCH--HHHHHHHHHHhhhhHHHHHHHHhhccC------cHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56666664433 4444444433333 2333333221 12445556678999999888655443
No 61
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.97 E-value=0.11 Score=60.11 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=89.8
Q ss_pred HhcchHHHHHHHHHHhhcc-c-chhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccc-hhhHHHHHHHHHHHHHHHHH
Q 000968 841 RAGLSMALGAFLAGLLLAE-T-EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVA 917 (1207)
Q Consensus 841 ~lGLS~~LGAFvAGLvLsn-~-~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~-~~~illlllllll~K~l~v~ 917 (1207)
..++++.+=|.+.|++++| . ...+....-++.....++.+=-++.|.++++..+... +..++..++.+ ..-+...+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v-~~~~~~~~ 101 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVV-ILTFLLTY 101 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHH-HHHHHHHH
Confidence 4688899999999999999 4 3444444444444557777777889999999988763 33333333333 33334444
Q ss_pred HHH-HhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhh---HHHHHHHHHHHHHhHHHHHhhh
Q 000968 918 LVG-RLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQL---SSLLFLLVGISMALTPWLAAGG 983 (1207)
Q Consensus 918 l~~-~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el---~siLvlvvvlS~lItPlL~~~~ 983 (1207)
..+ +++|++++.+..++.+.+.=|.-+++...-..+.. +++. ...+++.-.+.+++.|++..+.
T Consensus 102 ~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 102 WLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 445 99999999999999887776765554433233221 1221 2333344566778889887654
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.96 E-value=0.019 Score=62.72 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=66.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH-HHHhhhhC-CCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e-~ve~~r~~-g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.+++|+|.|.+|..-++.|.+.|..++||+.+.. ..+.+... ++..+.|+.... . +..++.||++++|++.|
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~-d-----l~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDAD-I-----LEGAFLVIAATDDEELN 83 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH-H-----hCCcEEEEECCCCHHHH
Confidence 4799999999999999999999999999988753 33444433 566667776633 2 46799999999999999
Q ss_pred HHHHHHHHHhC
Q 000968 1088 YRTVWALSKYF 1098 (1207)
Q Consensus 1088 i~i~l~aR~l~ 1098 (1207)
..+...+++.+
T Consensus 84 ~~i~~~a~~~~ 94 (205)
T TIGR01470 84 RRVAHAARARG 94 (205)
T ss_pred HHHHHHHHHcC
Confidence 99999998764
No 63
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.93 E-value=0.1 Score=58.83 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcccchhH-HHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHH
Q 000968 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIG 910 (1207)
Q Consensus 832 ~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~-~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll 910 (1207)
+.....++..++++..++-.++|++++..-... +-.+.++.+..+-..++....|+++|++.+..++...+.+....++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999999999998653210 1112355566677777888899999999988766544333333333
Q ss_pred HH-HHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHH
Q 000968 911 GK-TILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGIS 972 (1207)
Q Consensus 911 ~K-~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS 972 (1207)
.- .+..+...++++.++.+++.+|..+++-. .-++...-.+.+..+.+.-..++...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 33 33344466778999999998888766442 12233344445554444444444444333
No 64
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.75 E-value=0.27 Score=57.54 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 000968 848 LGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLFGVS 926 (1207)
Q Consensus 848 LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~-~~~~illlllllll~K~l~v~l~~~l~g~~ 926 (1207)
+.+++.|+.++| ..+++.+...+--.+++|++-+..|..++++.+.. .++.+++.+. .++..+...+...|+++..
T Consensus 177 llplliG~~lgn--l~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~ 253 (326)
T PRK05274 177 VLPLLVGFILGN--LDPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVA-VVAVTGIPLYLADRLIGGG 253 (326)
T ss_pred HHHHHHHHHHHh--HHHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhh-HhhccchhhHhHhheeecC
Confidence 378888999988 44445555555556799999999999999988755 4554433322 2233344445555777432
Q ss_pred hhhhhhhhhhcCCCcchhhHHHHHHHhhcc---chhhhHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh
Q 000968 927 VISAIRTGLLLAPGGEFAFVAFGEAVNQGI---MSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFE 991 (1207)
Q Consensus 927 ~real~lGL~La~rGe~alVLa~lal~~gl---Is~el~siLvlvvvlS~lItPlL~~~~~~La~rl~ 991 (1207)
.. ..-++.. ..-|.-....+.++.-... ..+.....+..++++++++.|++..+ +.+|..
T Consensus 254 ~g-~~g~a~~-ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~---~~k~~~ 316 (326)
T PRK05274 254 NG-VAGAAAG-STAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAW---WSKRVG 316 (326)
T ss_pred CC-cchHHHH-HHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 22 0111111 0111111111111111111 22333334445667899999999874 444543
No 65
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.73 E-value=0.031 Score=66.33 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=71.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEec---CCcch
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL---DTPGA 1086 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViat---ddd~~ 1086 (1207)
..++|+|+|.+|+..++.+...|.+++++|.++++.+.+....-..++.+..+++.|.++ +.++|.+|.++ ..+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEEEccccCCCCCC
Confidence 449999999999999999999999999999999988777544333444556667767665 67999999887 33333
Q ss_pred hHHHHHHHHHhCCCceEEEeeCC
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAHD 1109 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~d 1109 (1207)
++.....++.+.|...++-.+.+
T Consensus 247 ~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 247 KLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cCcCHHHHhcCCCCCEEEEEecC
Confidence 43444555666776555554544
No 66
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.70 E-value=0.09 Score=56.96 Aligned_cols=128 Identities=25% Similarity=0.394 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccCh-----hHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000968 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSV-----ERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1207)
Q Consensus 630 VGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl-----~~Lr~~~k~il~Lg~l~vllt~vlvglll~ 704 (1207)
++.+++|+++|-..... ....+.+.+..+.+++|.+|+++-- +++++..++.+.+.+..++-+ ++.++++.
T Consensus 2 l~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS-llgg~l~~ 77 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS-LLGGLLAS 77 (191)
T ss_pred eeeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45678888888643322 2223788999999999999998844 356666678877776655544 44666667
Q ss_pred HHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHHHhhhhHHHHHHHHHH
Q 000968 705 FVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILI 765 (1207)
Q Consensus 705 ~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsvsl~nDi~aIvll~li 765 (1207)
+++++++..++.+|+-+.-=|-.-+ ++.+.. +...|.+++-.=++-++.++++.-++
T Consensus 78 ~ll~~~~~~~lav~sG~GwYSlsg~--~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 78 LLLGLSLKESLAVASGFGWYSLSGV--LITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred HHhcCCHHHHHHHHccCcHHHhHHH--HHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999887755433222 233321 34667777666666666666555433
No 67
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.65 E-value=0.22 Score=65.14 Aligned_cols=115 Identities=14% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHHhhcccccccccCchhHHHH-HHHHHHHHHHHHhhccChhHHHhchhhHH--HHHHHHHHHHHHHHHH
Q 000968 625 GGSPVLGYLAAGILIGPYGLSIIRHVHGTKAI-AEFGVVFLLFNIGLELSVERLSSMKKYVF--GLGSAQVLVTAVVVGL 701 (1207)
Q Consensus 625 ~lP~IVGyLLaGILLGP~gLglI~~~~~l~~L-aeLGLv~LLF~aGLEldl~~Lr~~~k~il--~Lg~l~vllt~vlvgl 701 (1207)
++.+++|-.++|+++...-++- .-.+.++.+ ..+.+++++..+|+++|+..+.......+ .+.++.++.= ++.++
T Consensus 292 Gl~~ilGAFlaGl~lp~~~~~~-~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK-~~g~~ 369 (832)
T PLN03159 292 GTHSVFGAFVFGLVIPNGPLGV-TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGK-IMGTI 369 (832)
T ss_pred CccHHHHHHHHhhccCCcchHH-HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHH-HHHHH
Confidence 5555555555565554210000 001223333 56778888889999999988753221111 1111111111 12334
Q ss_pred HHHHHhCCChHHHHHHhhccccCcHH--HHHHHHHhcCCCCC
Q 000968 702 VAHFVSGLPGPASIVIGNGLALSSTA--VVLQVLQERGESTS 741 (1207)
Q Consensus 702 ll~~llGls~~~ALlLGailS~TStA--VVl~IL~elg~l~s 741 (1207)
+..+++|++|..++.+|++++.-... +++.+-.+.+.++.
T Consensus 370 l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~ 411 (832)
T PLN03159 370 IIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD 411 (832)
T ss_pred HHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence 44557899999999999998865543 34444455555443
No 68
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.61 E-value=0.081 Score=66.15 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHh
Q 000968 601 ASLFDVLWLLLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~R-l~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~ 679 (1207)
++++.+++.+.+++++|.+--+ + ++-.+.|-+++|+++|-.++. ..+.+.++|+++++|.+|++.-+..++.
T Consensus 10 ~p~l~lfl~i~lG~~lG~iki~~~-~LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~ 82 (562)
T TIGR03802 10 NPEIALFLSLALGYLIGKIKFGSF-QLGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFAS 82 (562)
T ss_pred CHHHHHHHHHHHhHhhcceEEeee-ecchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHH
Confidence 3444455555555555544222 3 455688999999999976543 2345788999999999999999998887
Q ss_pred chhhHHHHHHHHHH--HHHHHHHHHHHHHhCCChHHH--HHHhhccccCcHHHHHHHHHhcC
Q 000968 680 MKKYVFGLGSAQVL--VTAVVVGLVAHFVSGLPGPAS--IVIGNGLALSSTAVVLQVLQERG 737 (1207)
Q Consensus 680 ~~k~il~Lg~l~vl--lt~vlvglll~~llGls~~~A--LlLGailS~TStAVVl~IL~elg 737 (1207)
.++..+.+.++.++ +..+++++++++++|++...+ ++-|+.-+...-+.+...+...+
T Consensus 83 l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 83 LKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 77654443333333 233445566667889976543 33333222222234455555554
No 69
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.56 E-value=0.17 Score=63.13 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchhH-HHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHH
Q 000968 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGL 907 (1207)
Q Consensus 829 Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~-~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illllll 907 (1207)
+++++.+..++..++++.++|=.++|++++..-+.. .-.+.++.+.++-+.++...+|+.+|++.+.......+...+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444555667788899999999999999998753211 0113345566666667777789999998886543222211111
Q ss_pred HHHHHHHHHHHHHHhhCcchhhhhhhhhhcCC
Q 000968 908 LIGGKTILVALVGRLFGVSVISAIRTGLLLAP 939 (1207)
Q Consensus 908 lll~K~l~v~l~~~l~g~~~real~lGL~La~ 939 (1207)
-++.-++..+...+.+++++..++.+|..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~ 126 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLST 126 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22223334445566778888888888876554
No 70
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.49 E-value=0.05 Score=60.00 Aligned_cols=112 Identities=19% Similarity=0.081 Sum_probs=76.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCC-CeEeecCCh----------HHHHhhhhCCCCEE--EecCCCHHHHHhcCccccCE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS----------DRVAIGRALDLPVY--FGDAGSREVLHKVGAERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~----------e~ve~~r~~g~~vi--~GDatd~evL~~AgI~~A~~ 1076 (1207)
.+++|.|+|.+|+.+++.|.+.|. .+.+.|.+. +.++..+..+-... .+|..+++.+. .. ++|.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~DV 100 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAIL--GL-DVDI 100 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccce--ec-cccE
Confidence 479999999999999999999977 677789888 77776654432222 13344444444 33 7898
Q ss_pred EEEecCCcchhHHHHHHHHHhCCCceEEE-eeC---ChHHHHHHHhCCCCeeecCCcHH
Q 000968 1077 AAITLDTPGANYRTVWALSKYFPNVKTFV-RAH---DIDHGLNLEKAGATAVVPETLEP 1131 (1207)
Q Consensus 1077 VViatddd~~Ni~i~l~aR~l~P~i~IIa-Ra~---d~~~~~~L~~aGAd~VI~p~~ea 1131 (1207)
++-+...+..|-.. ++++. +++|+ .++ ++++.+.|++.| .++.|.+.+
T Consensus 101 lipaA~~~~i~~~~---a~~l~--a~~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~ 152 (217)
T cd05211 101 FAPCALGNVIDLEN---AKKLK--AKVVAEGANNPTTDEALRILHERG--IVVAPDIVA 152 (217)
T ss_pred EeeccccCccChhh---HhhcC--ccEEEeCCCCCCCHHHHHHHHHCC--cEEEChHHh
Confidence 88887766555444 34443 56665 555 578999999999 455566544
No 71
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.47 E-value=0.1 Score=59.87 Aligned_cols=109 Identities=18% Similarity=0.084 Sum_probs=76.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.++.|+|+|++|+.+++.|...|.++++.++++++.+.....|...+. .+.|.+ -+.++|.|+.+++....+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~-~l~~aDiVint~P~~ii~~- 224 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFP-----LNKLEE-KVAEIDIVINTIPALVLTA- 224 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHH-HhccCCEEEECCChHHhCH-
Confidence 479999999999999999999999999999999887766655644332 222332 2468999999987653332
Q ss_pred HHHHHHHhCCCceEEEeeCChH--HHHHHHhCCCCeeecC
Q 000968 1090 TVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~~--~~~~L~~aGAd~VI~p 1127 (1207)
.....+.|+.-+|=.+.++. ..+..++.|+..+..|
T Consensus 225 --~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 225 --DVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAP 262 (287)
T ss_pred --HHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeC
Confidence 22344555655555555442 2378899999999644
No 72
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.30 E-value=0.069 Score=61.44 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=59.0
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecC
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatd 1082 (1207)
+++|.| .|.+|+.+++.|.+.|++|+++.++++........++.++.||.+|++.|.++ ++.+|+|+-+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEECCC
Confidence 367777 59999999999999999999999998776655667899999999999998765 456788887643
No 73
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.27 E-value=0.063 Score=56.12 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=69.8
Q ss_pred ccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch----
Q 000968 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA---- 1086 (1207)
Q Consensus 1012 VIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~---- 1086 (1207)
|+|.|. |.+|+.+++.|.+++++++++-+++++.+. ..++.++.||..|++.+.++ +..++.|+.+.+....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAA-LKGADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHH-HTTSSEEEECCHSTTTHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhh-hhhcchhhhhhhhhcccccc
Confidence 567885 999999999999999999999999998876 77899999999999888775 3489999999874322
Q ss_pred hHHHHHHHHHhCCCceEEE
Q 000968 1087 NYRTVWALSKYFPNVKTFV 1105 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIa 1105 (1207)
...++..+++.+.. +++.
T Consensus 78 ~~~~~~a~~~~~~~-~~v~ 95 (183)
T PF13460_consen 78 AKNIIEAAKKAGVK-RVVY 95 (183)
T ss_dssp HHHHHHHHHHTTSS-EEEE
T ss_pred cccccccccccccc-ccee
Confidence 22344455555543 4433
No 74
>PRK03818 putative transporter; Validated
Probab=95.25 E-value=0.32 Score=60.76 Aligned_cols=127 Identities=21% Similarity=0.314 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhcccc--cccccCchhHHHHHHHHHHHHHHHHhhccChhHH
Q 000968 601 ASLFDVLWLLLASVIFVPIFQKIPGGS-PVLGYLAAGILIGPYG--LSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1207)
Q Consensus 601 ~~Ll~l~lLLl~A~ll~~L~~Rl~~lP-~IVGyLLaGILLGP~g--LglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~L 677 (1207)
++++.+.+.+.+++++|.+ |+.+++ .+.|-+++|+++|... +++.-+.....++.++|+.+++|.+|++--+..+
T Consensus 6 ~~~~~l~l~i~lG~~lG~i--~i~g~~LG~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~ 83 (552)
T PRK03818 6 LTVSILALVAVVGLWIGNI--KIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFF 83 (552)
T ss_pred HHHHHHHHHHHHHHhhcce--EECCCccccHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 3445555555555555542 121111 1479999999999732 2221233445679999999999999999998877
Q ss_pred HhchhhH---HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHH
Q 000968 678 SSMKKYV---FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (1207)
Q Consensus 678 r~~~k~i---l~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~ 731 (1207)
...++.. ..++++-.+++. ++++++++++++++..+.-+ ..=+.|||+..-.
T Consensus 84 ~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~-~aGa~T~tp~l~a 138 (552)
T PRK03818 84 SSLRKSGLRLNLFAVLIVILGG-LVTAILHKLFGIPLPVMLGI-FSGAVTNTPALGA 138 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHH-hhccccccHHHHH
Confidence 6555543 334443333333 34566677889987643222 2224466554433
No 75
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.24 E-value=0.12 Score=59.38 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=71.5
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
+-++|.|.+|..+++.|.+.|+++++.|+++++.+.+.+.|.... .+..++.+++ +.++.|+++++++.....++
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~---~s~~~~~~~~--~~advVi~~vp~~~~~~~v~ 77 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR---HSLEELVSKL--EAPRTIWVMVPAGEVTESVI 77 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec---CCHHHHHHhC--CCCCEEEEEecCchHHHHHH
Confidence 678999999999999999999999999999999988877664321 1223334433 35789999999885544444
Q ss_pred HHHHH-hCCCceEEEeeC--Ch----HHHHHHHhCCCCeee
Q 000968 1092 WALSK-YFPNVKTFVRAH--DI----DHGLNLEKAGATAVV 1125 (1207)
Q Consensus 1092 l~aR~-l~P~i~IIaRa~--d~----~~~~~L~~aGAd~VI 1125 (1207)
..+.. +.|+ ++++... ++ +-.+.+.+.|+.++=
T Consensus 78 ~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 78 KDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 33333 2343 4555442 23 333445566766543
No 76
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.23 E-value=0.12 Score=59.47 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=74.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
++-|+|.|.+|..+++.|.+.|+++++.|+++++++.+.+.|.... .+++-+.+ ....+|.|+++++++ ....+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~vp~~-~~~~v 75 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVMVPHG-IVDAV 75 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEEcCch-HHHHH
Confidence 4678999999999999999999999999999999998887664332 23333322 246789999999987 44444
Q ss_pred HHHHHHh-CCCceEEEeeCC------hHHHHHHHhCCCCeeecC
Q 000968 1091 VWALSKY-FPNVKTFVRAHD------IDHGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1091 ~l~aR~l-~P~i~IIaRa~d------~~~~~~L~~aGAd~VI~p 1127 (1207)
+..+... .|+ ++++-..+ .+....+.+.|+..+=.|
T Consensus 76 ~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 76 LEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred HHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence 4333333 344 45555433 233345556676655444
No 77
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.18 E-value=9.4 Score=45.33 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCchHHHHHHHHHhhcccccccccCc--hhH------HHHHHHHHHHHHHH
Q 000968 602 SLFDVLWLLLASVIFVPIFQKIP------GGSPVLGYLAAGILIGPYGLSIIRHV--HGT------KAIAEFGVVFLLFN 667 (1207)
Q Consensus 602 ~Ll~l~lLLl~A~ll~~L~~Rl~------~lP~IVGyLLaGILLGP~gLglI~~~--~~l------~~LaeLGLv~LLF~ 667 (1207)
.+-.++++++.+.+++.+-+|+| +-|+++.++.+-.+.- .|++++. ... ..+.++.++-+.--
T Consensus 47 mlg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~---~~llp~~~i~avt~fm~~snFL~fyIA~LI~G 123 (438)
T COG3493 47 MLGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVF---YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVG 123 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHH---hccCCHHHHHHHHHHhcCCChHHHHHHHHHHh
Confidence 34566777788999998888875 3356665555444332 2333321 111 23444444444444
Q ss_pred HhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhc--------cccCcHHHHHHHHHhcCCC
Q 000968 668 IGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG--------LALSSTAVVLQVLQERGES 739 (1207)
Q Consensus 668 aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGai--------lS~TStAVVl~IL~elg~l 739 (1207)
.=|.+|.+.|-+...+.+...+.+++. +.+++.+...++|++|...++.-.+ ........++.-+ .+..
T Consensus 124 SILgmnRklLIk~~~~~i~~il~g~v~-A~~~g~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~i--tg~s 200 (438)
T COG3493 124 SILGMNRKLLIKSLKRYIPPILAGMVG-AAAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSSI--TGGS 200 (438)
T ss_pred hhhhccHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHHH--cCCC
Confidence 445778888877777666655555543 3345666667789888765543111 1111112222222 2222
Q ss_pred CChhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 000968 740 TSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1207)
Q Consensus 740 ~s~~Grl~Lsvsl~nDi~aIvll~li~~l 768 (1207)
...+-..++.+..+..+++++.-.++.-+
T Consensus 201 ~~~~~s~lipal~igNvfAIi~aall~~i 229 (438)
T COG3493 201 QEEYFSQLIPALTIGNVFAIICAALLNKI 229 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888777776544
No 78
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.06 E-value=0.17 Score=58.31 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
+|-++|.|.+|..+++.|.+.|+++++.|+++++++.+.+.|..+. .+-.+..+.+ +.+|.|+++++++.....+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~---~~~~e~~~~~--~~~dvvi~~v~~~~~~~~v 76 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGA---DSLEELVAKL--PAPRVVWLMVPAGEITDAT 76 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeec---CCHHHHHhhc--CCCCEEEEEecCCcHHHHH
Confidence 3678999999999999999999999999999999988877775432 1222333332 3578999999887444444
Q ss_pred HHHHHH-hCCCceEEEeeC--Ch----HHHHHHHhCCCCeeecC
Q 000968 1091 VWALSK-YFPNVKTFVRAH--DI----DHGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1091 ~l~aR~-l~P~i~IIaRa~--d~----~~~~~L~~aGAd~VI~p 1127 (1207)
...+.. +.|+ .+++-.. ++ +-.+.+++.|+.++=-|
T Consensus 77 ~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 77 IDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 333332 3344 3444432 22 23455677788876544
No 79
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.92 E-value=0.24 Score=57.58 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhhcccc-hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHH
Q 000968 833 LGTSLLTARAGLSMALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGG 911 (1207)
Q Consensus 833 Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~-~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~ 911 (1207)
++-.......|+++.+=|.+.|+++++.. .+++...-+.-....++.+=-++.|++++++.+.+--...+.+.+..+..
T Consensus 26 l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~ 105 (334)
T COG2855 26 LGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSS 105 (334)
T ss_pred HhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHH
Confidence 33334455677888899999999999643 44455555555566777777788999999999876333334445555666
Q ss_pred HHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHH---HHHHHHhHHHHHhhh
Q 000968 912 KTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLL---VGISMALTPWLAAGG 983 (1207)
Q Consensus 912 K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlv---vvlS~lItPlL~~~~ 983 (1207)
-++..+...+++|++++.++.+|.+-+.=|.-++....-.. +--+++....+..+ -.+.+++.|++..+.
T Consensus 106 t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi--ka~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 106 TFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI--KAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC--CCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 77788888889999999999999775544443332221111 11123333222222 334556678777654
No 80
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=94.91 E-value=0.38 Score=50.44 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHH
Q 000968 608 WLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1207)
Q Consensus 608 lLLl~A~ll~~L~~Rl~~lP--~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il 685 (1207)
+.++++.+.+.+++++ ++| .++|-++++.++.-.+.. +......+..++.+++-..+|..++.+.+++..+...
T Consensus 2 ~~~~~~~~~g~l~~~l-~~Pa~~llG~mi~~~~~~~~~~~---~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 2 LLLLVGLAGGLLASLL-GLPAAWLLGPLLAGAVLSLAGGL---EITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhcCCc---cCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3456678888899988 887 677888888777633211 2345678889999999999999999999987776544
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 000968 686 GLG--SAQVLVTAVVVGLVAHFVSGLPGPASIVI 717 (1207)
Q Consensus 686 ~Lg--~l~vllt~vlvglll~~llGls~~~ALlL 717 (1207)
... .+-.++..++.+++++.+.|+++..+++-
T Consensus 78 ~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La 111 (156)
T TIGR03082 78 AALLSTVLLLALSALLAWLLARLTGVDPLTAFLA 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 322 22222233345566677789998887643
No 81
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.80 E-value=0.86 Score=54.77 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHH-HHHHHHHHHHhhccChhHHHhchhhHH
Q 000968 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAE-FGVVFLLFNIGLELSVERLSSMKKYVF 685 (1207)
Q Consensus 607 ~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~Lae-LGLv~LLF~aGLEldl~~Lr~~~k~il 685 (1207)
...+.+...+++++..+ ++++++|-.++|+++...-..-.+-.+.++.+.+ +.++++...+|+++|++.+...+..++
T Consensus 225 ~~~l~i~l~~a~l~e~~-gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l 303 (397)
T COG0475 225 LFVLLLVLGAAYLAELL-GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLIL 303 (397)
T ss_pred HHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHH
Confidence 34444455566777888 9999999999999999753331122356788888 999999999999999999998887755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 000968 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1207)
Q Consensus 686 ~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~T 724 (1207)
.+..+.++.- .+.+++..+.+|++...++.+|..+...
T Consensus 304 ~~~~~~i~~K-~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 341 (397)
T COG0475 304 LLVALAILGK-ILGAYLAARLLGFSKRLALGIGLLLRQG 341 (397)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHcCcHHHHHHHHhhhhhh
Confidence 5444443333 3344455567788888888888876643
No 82
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.80 E-value=0.11 Score=57.57 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=64.1
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCC--hHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVR--SDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D--~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
..+++|+|.|.++..=++.|.+.|-.++||-++ ++..+......+.++..+.. ++- ++.+..|+++|+|++.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~-~~d-----l~g~~LViaATdD~~v 98 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD-KEF-----IKDKHLIVIATDDEKL 98 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC-hHH-----hCCCcEEEECCCCHHH
Confidence 348999999999999999999999999999665 34333333344556655443 332 4678999999999999
Q ss_pred hHHHHHHHHHhC
Q 000968 1087 NYRTVWALSKYF 1098 (1207)
Q Consensus 1087 Ni~i~l~aR~l~ 1098 (1207)
|..+...+++.+
T Consensus 99 N~~I~~~a~~~~ 110 (223)
T PRK05562 99 NNKIRKHCDRLY 110 (223)
T ss_pred HHHHHHHHHHcC
Confidence 999999998764
No 83
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.68 E-value=0.38 Score=56.48 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=81.1
Q ss_pred hcchHHHHHHHHHHhhcccc---hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHH-HH
Q 000968 842 AGLSMALGAFLAGLLLAETE---FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL-VA 917 (1207)
Q Consensus 842 lGLS~~LGAFvAGLvLsn~~---~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~-v~ 917 (1207)
.++++.+=|.+.|++++|.- ..+....-++-....++-+=-++.|+++++..+...-+..+...+..+..-++. .+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999942 222222222223345555556778999999988663222223333333333444 44
Q ss_pred HHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhh---HHHHHHHHHHHHHhHHHHHhhh
Q 000968 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQL---SSLLFLLVGISMALTPWLAAGG 983 (1207)
Q Consensus 918 l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el---~siLvlvvvlS~lItPlL~~~~ 983 (1207)
+..+++|++++.+..++.+.+.=|.-+++...-..+.. +++. ...+++.-.+.|++.|++..+.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 44489999999999888776555544443322222211 1222 1233334457788889887543
No 84
>PRK11281 hypothetical protein; Provisional
Probab=94.67 E-value=25 Score=47.75 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 000968 224 TMALSLAEARLQVAIESLQD 243 (1207)
Q Consensus 224 ~~~~~~a~~~~~~~~~~~~~ 243 (1207)
.-.++-|..|+|.+...+.+
T Consensus 162 Q~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33556666677777665554
No 85
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.58 E-value=3.6 Score=53.86 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=39.0
Q ss_pred CCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000968 260 KSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1207)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~ 312 (1207)
+.|++.-++.|..+|++-...+..+.+...+|+.|..+.+||+.+...-.+-|
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A 1642 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEA 1642 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 45666777777788888888888888888888888888888887665544433
No 86
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.56 E-value=0.34 Score=62.19 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=66.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhcccch--hHHH-----HHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHH
Q 000968 835 TSLLTARAGLSMALGAFLAGLLLAETEF--SLQV-----ESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGL 907 (1207)
Q Consensus 835 ~a~Lae~lGLS~~LGAFvAGLvLsn~~~--~~~l-----~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illllll 907 (1207)
..++.+.+.++..+-.+++|++++.... -... ......+..+.+++.-+..|+.++...+...|..++.+++.
T Consensus 29 s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 29 SLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVP 108 (810)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 3344445555555555555555553211 0000 11111155667777777899999999999888776655555
Q ss_pred HHHHHHHHHHHHHHh--hCcchhhhhhhhhhcCCCcc
Q 000968 908 LIGGKTILVALVGRL--FGVSVISAIRTGLLLAPGGE 942 (1207)
Q Consensus 908 lll~K~l~v~l~~~l--~g~~~real~lGL~La~rGe 942 (1207)
.+..-++++.+++++ .+++|..++.+|..++|-.-
T Consensus 109 ~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 109 VMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 555555555555543 49999999999999887653
No 87
>PLN02494 adenosylhomocysteinase
Probab=94.56 E-value=0.085 Score=64.12 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=66.7
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
...++|+|||.+|+.+++.++..|.+|+++|.|+.+...+...|+.++ + ++++ +..+|.++.++++. ++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~------leEa-l~~ADVVI~tTGt~--~v 322 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--T------LEDV-VSEADIFVTTTGNK--DI 322 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--c------HHHH-HhhCCEEEECCCCc--cc
Confidence 356999999999999999999999999999999988766666777654 1 2222 35689988877654 22
Q ss_pred HHHHHHHHhCCCceEEEeeC--ChHHHHHHHh
Q 000968 1089 RTVWALSKYFPNVKTFVRAH--DIDHGLNLEK 1118 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~--d~~~~~~L~~ 1118 (1207)
........+-|+..++--.+ +.-+...|.+
T Consensus 323 I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 323 IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred hHHHHHhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 22344555556655544444 2334444444
No 88
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=94.56 E-value=12 Score=43.51 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhhccc--chhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000968 845 SMALGAFLAGLLLAET--EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1207)
Q Consensus 845 S~~LGAFvAGLvLsn~--~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l 922 (1207)
+|.+-|.++|+++.-. +...-+.+.++.+.+...|+-.+.+|+.++...+..++..+....++.++.-++.++.....
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~ 261 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKL 261 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555532 23455666677778888999999999999887776566556666667777788888888888
Q ss_pred hCcchhhh--hhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHh
Q 000968 923 FGVSVISA--IRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1207)
Q Consensus 923 ~g~~~rea--l~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~ 981 (1207)
++.+.... ..+-. -.|.+.... ..+..++.-.+...+.+++..++|.+..|++..
T Consensus 262 ~~l~~~~~~~~vl~a-a~P~a~~~~---i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~ 318 (321)
T TIGR00946 262 IGLRGLELSVAILQA-ALPGGAVAA---VLATEYEVDVELASTAVTLSTVLSLISLPLFII 318 (321)
T ss_pred hCCChHHHHHHHHHH-cCChhhHHH---HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77754322 11111 234444333 334455554455556666777777777777653
No 89
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.55 E-value=26 Score=47.47 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=7.9
Q ss_pred HHHHHhhhHHHHHHHHH
Q 000968 290 ELRRLQSKKEELQKEVD 306 (1207)
Q Consensus 290 ~l~~~~~~~~~~q~~~~ 306 (1207)
++.++|.+.+.||+.++
T Consensus 216 ~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 216 RSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444554443
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.51 E-value=0.18 Score=55.07 Aligned_cols=86 Identities=19% Similarity=0.069 Sum_probs=66.3
Q ss_pred ccccC-CCchHHHHHHHHHhcCCCeEeecCChH--HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCC---cc
Q 000968 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT---PG 1085 (1207)
Q Consensus 1012 VIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e--~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatdd---d~ 1085 (1207)
|.|+| -|.+|+.+++.|.+.+.+|+++-+++. ..+.++..|..++.+|..|++.|.++ ...++.|+++++. .+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~~~~~~~~~~~ 79 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVFSVTPPSHPSE 79 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEEEESSCSCCCH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEEeecCcchhhh
Confidence 35666 499999999999999999999999864 46777889999999999999999765 6799999999883 32
Q ss_pred --hhHHHHHHHHHhC
Q 000968 1086 --ANYRTVWALSKYF 1098 (1207)
Q Consensus 1086 --~Ni~i~l~aR~l~ 1098 (1207)
.-..++.++++.+
T Consensus 80 ~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 80 LEQQKNLIDAAKAAG 94 (233)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHhhhccc
Confidence 2234555666655
No 91
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.44 E-value=0.053 Score=55.37 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=73.4
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCC---H-HHH-H-hcCccccCEEEEecCCcc
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS---R-EVL-H-KVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd---~-evL-~-~AgI~~A~~VViatddd~ 1085 (1207)
|.|+|.|.+|..++..|.+.|++|+++.+.+ +.+..++.|+.+...+..+ + ... . ....+.+|.|++++....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 5799999999999999999999999999998 8887777776665555100 0 000 0 456788999999997765
Q ss_pred hhHHHHHHHHHhCCCceEEEeeCChHHHHHHHhC
Q 000968 1086 ANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKA 1119 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~a 1119 (1207)
..-.+-...+...|+..|+.-.+--.+.+.+.+.
T Consensus 80 ~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 80 LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 4443333334445665666666666666666644
No 92
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.34 E-value=0.095 Score=62.90 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCC
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatdd 1083 (1207)
..++|+|||.+|+.+++.++..|.+|+++|.||.+...++..|+.++. ++++ +..+|.+|.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--------leea-l~~aDVVItaTG~ 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKIGDIFITATGN 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCC--------HHHH-HhcCCEEEECCCC
Confidence 479999999999999999999999999999999887767767764431 1222 4678998888765
No 93
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.34 E-value=0.12 Score=62.98 Aligned_cols=100 Identities=19% Similarity=0.115 Sum_probs=68.4
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
..++|+|||++|+.+++.|+..|..|++.|.||.+...+...|+.+. + +.++ +..+|.|++++.+. ++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-----~---leel-l~~ADIVI~atGt~--~iI 323 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-----T---LEDV-VETADIFVTATGNK--DII 323 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-----c---HHHH-HhcCCEEEECCCcc--ccc
Confidence 46999999999999999999999999999999887655555565443 1 2222 46899999887643 333
Q ss_pred HHHHHHHhCCCceEEEeeCCh--HHHHHHHhCC
Q 000968 1090 TVWALSKYFPNVKTFVRAHDI--DHGLNLEKAG 1120 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~--~~~~~L~~aG 1120 (1207)
-......+-|...++--.+.. .....|+..+
T Consensus 324 ~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred CHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 334556666776655544443 3345556544
No 94
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.29 E-value=0.34 Score=60.26 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHH
Q 000968 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL 908 (1207)
Q Consensus 829 Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllll 908 (1207)
++.+.+...++..++++..++-+++|++++..+....+.-.-+.+..+++|+.....|+.+|.+.+..++..++.+.+..
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~ 86 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL 86 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34444556778888999999999999998854321111101112345778888888999999999988776554443333
Q ss_pred HHHHHHH-HHHHHHhhCcchhhhhhhhhhcCCCcchhh
Q 000968 909 IGGKTIL-VALVGRLFGVSVISAIRTGLLLAPGGEFAF 945 (1207)
Q Consensus 909 ll~K~l~-v~l~~~l~g~~~real~lGL~La~rGe~al 945 (1207)
++.-.+. .+...++.+++|..++.+|..+++-.-.+.
T Consensus 87 vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 87 VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 3333333 333344679999999999999888776543
No 95
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.26 E-value=0.61 Score=58.41 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchhH---HHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHH
Q 000968 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL---QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGAL 905 (1207)
Q Consensus 829 Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~---~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illll 905 (1207)
++++.....++..+|++.+++-.++|++++...... .-.+..+.+..+.++++....|+++|++.+...+...+.+.
T Consensus 15 l~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la 94 (562)
T PRK05326 15 LLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLA 94 (562)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHH
Confidence 344445567788899999999999999998753210 11123455677888888888999999999887665443332
Q ss_pred HHHHHH-HHHHHHHHHHhhCcchhhhhhhhhhcCCCc
Q 000968 906 GLLIGG-KTILVALVGRLFGVSVISAIRTGLLLAPGG 941 (1207)
Q Consensus 906 lllll~-K~l~v~l~~~l~g~~~real~lGL~La~rG 941 (1207)
.+.++. -.+..+...++++++|.+++.+|..+++-.
T Consensus 95 ~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td 131 (562)
T PRK05326 95 TLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTD 131 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCc
Confidence 222222 222334555678999999999988766554
No 96
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.26 E-value=0.26 Score=58.85 Aligned_cols=116 Identities=18% Similarity=0.082 Sum_probs=87.1
Q ss_pred cccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHhhhhC---CCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~~r~~---g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.++|+|.|.+|+.+++.|.+++ .++++.|++++.+++.... +.....=|+.+.+.|.++= .+.++||.+.+.. .
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~~p~~-~ 80 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINAAPPF-V 80 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEeCCch-h
Confidence 5899999999999999999888 8999999999999888665 5889999999999998774 4448888888665 4
Q ss_pred hHHHHHHHHHhCCCceEEEeeCCh----HHHHHHHhCCCCeeecCCcH
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAHDI----DHGLNLEKAGATAVVPETLE 1130 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~d~----~~~~~L~~aGAd~VI~p~~e 1130 (1207)
+..+..++-+..- +.+-.+.++ +..+..+++|...|..-.+.
T Consensus 81 ~~~i~ka~i~~gv--~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~d 126 (389)
T COG1748 81 DLTILKACIKTGV--DYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFD 126 (389)
T ss_pred hHHHHHHHHHhCC--CEEEcccCCchhhhhhHHHHHcCeEEEcccCcC
Confidence 4455545544443 233333333 35677788998887744443
No 97
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.23 E-value=0.26 Score=56.24 Aligned_cols=105 Identities=13% Similarity=-0.033 Sum_probs=68.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCC------HHHHHhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS------REVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd------~evL~~AgI~~A~~VViatddd 1084 (1207)
++.|+|.|.+|..++..|.+.|.+|+++++ +++.+..++.|+.+..++... ...... ..+.+|.+++++...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vilavk~~ 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEE-LTGPFDLVILAVKAY 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHH-ccCCCCEEEEEeccc
Confidence 478999999999999999999999999999 888887777776554332110 001111 137899999999877
Q ss_pred chhHHHHHHHHHhCCCceEEEeeCChHHHHHHH
Q 000968 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLE 1117 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~ 1117 (1207)
...-.+........++..++.-.+--.+.+.+.
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~ 112 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE 112 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH
Confidence 544433333333455555555555444444444
No 98
>PRK04972 putative transporter; Provisional
Probab=94.21 E-value=0.51 Score=59.12 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchh
Q 000968 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK 682 (1207)
Q Consensus 603 Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k 682 (1207)
++.+++.+.+++++|.+--+-.++-...|-+++|+++|..++.+ ...+.++|+.+++|.+|++--+..+...++
T Consensus 14 ~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~------~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~ 87 (558)
T PRK04972 14 ILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI------NTDALNLGFMLFIFCVGVEAGPNFFSIFFR 87 (558)
T ss_pred hHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC------ChHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34444445555555543222114445669999999999765432 344568999999999999998887765554
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHH
Q 000968 683 Y---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVL 730 (1207)
Q Consensus 683 ~---il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl 730 (1207)
. ...++++-.+++. ++++++.+++|+++..+.-+-+ =+.|+|+..-
T Consensus 88 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~a-Ga~T~tp~l~ 136 (558)
T PRK04972 88 DGKNYLMLALVMVGSAL-VIALGLGKLFGWDIGLTAGMLA-GSMTSTPVLV 136 (558)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHhh-ccccCcHHHH
Confidence 3 3344444333333 3444555678888764332222 2345554433
No 99
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.09 E-value=0.13 Score=60.32 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=65.5
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCCh---------------------HHHH----hhhh--CC--CCEEEe
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS---------------------DRVA----IGRA--LD--LPVYFG 1058 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~---------------------e~ve----~~r~--~g--~~vi~G 1058 (1207)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|. .+++ .+++ .+ +..+.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 4589999999999999999999998 799999985 1222 1221 22 345566
Q ss_pred cCCCHHHHHhcCccccCEEEEecCCcchhHHHHHHHHHhC
Q 000968 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1207)
Q Consensus 1059 Datd~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR~l~ 1098 (1207)
|.+. +.+++. +.++|.||.++|+.+.+..+...+++.+
T Consensus 104 ~~~~-~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ 141 (338)
T PRK12475 104 DVTV-EELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYN 141 (338)
T ss_pred cCCH-HHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 6653 444444 6889999999999988888777777765
No 100
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=94.07 E-value=1.3 Score=46.44 Aligned_cols=117 Identities=26% Similarity=0.355 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcch--HHHHHHHHHHhhcccc-hhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc---chhhHHH
Q 000968 830 LVILGTSLLTARAGLS--MALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVITG 903 (1207)
Q Consensus 830 al~Lg~a~Lae~lGLS--~~LGAFvAGLvLsn~~-~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~---~~~~ill 903 (1207)
+++...+++...+|++ ..+|+++++.++.-.. ..-.+.. .+..+-..+.=+.+|.+++...+.. .+...++
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~---~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPP---WLLALAQVVIGILIGSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCH---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3444455566677765 7788888887776332 1111111 1223333344466899998766654 3444445
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHH
Q 000968 904 ALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1207)
Q Consensus 904 lllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal 952 (1207)
..+..++.-.+..++..++.++++.++++. .+|.|.-++.+.+...
T Consensus 82 ~~~~~l~~~~~~~~~l~~~~~~~~~ta~La---~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 82 STVLLLALSALLAWLLARLTGVDPLTAFLA---TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCchHHHHHHHHHHh
Confidence 555666667777888899999999887633 4788888777666544
No 101
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=94.07 E-value=18 Score=43.76 Aligned_cols=314 Identities=16% Similarity=0.189 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh---hcccc---cccccCc--hhH------HHHHHHHHHHHHHH
Q 000968 602 SLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGIL---IGPYG---LSIIRHV--HGT------KAIAEFGVVFLLFN 667 (1207)
Q Consensus 602 ~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGIL---LGP~g---LglI~~~--~~l------~~LaeLGLv~LLF~ 667 (1207)
.+..++++.+.+.+++++-+|+| -+=-|+-.|.+ ++|.. .|++++. +.. ..+.++.+..+.--
T Consensus 30 m~g~~a~~~v~G~~l~~IG~riP---i~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRIP---ILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCh---hhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHh
Confidence 34667788888999998888763 22233333433 23432 3444432 111 12334444444433
Q ss_pred HhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccc-cCcH---HHHHH-HHHh-cCCCCC
Q 000968 668 IGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLA-LSST---AVVLQ-VLQE-RGESTS 741 (1207)
Q Consensus 668 aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS-~TSt---AVVl~-IL~e-lg~l~s 741 (1207)
.=+.+|.+-|.+...+.+...+.+++... +++.+...++|+++..+++.-++=. .--. ++-++ +-.+ .+....
T Consensus 107 SILgm~RklLika~~r~~p~il~g~~~a~-~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~ 185 (414)
T PF03390_consen 107 SILGMNRKLLIKAFARFIPPILGGVIGAF-LLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAE 185 (414)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHH
Confidence 44688999999888877777666665544 3445555678998877665422211 1100 11111 1111 122223
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhcCC--CCCC--------------------cchHHHHHHHHHHHHHHHHHHHH
Q 000968 742 RHGRATFSVLLFQDLAVVVLLILIPLISPNS--SKGG--------------------VGFQAIAEALGVAAVKAAVAITA 799 (1207)
Q Consensus 742 ~~Grl~Lsvsl~nDi~aIvll~li~~la~~~--s~g~--------------------~~~~~i~~~L~~~ll~~il~iil 799 (1207)
.+-..++...++..++++++-.++.-+.... -+|+ .++ ..++ ..+
T Consensus 186 ~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~----~~~g---------~Gl 252 (414)
T PF03390_consen 186 EYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDF----SDMG---------AGL 252 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCH----HHHH---------HHH
Confidence 3334445667788888888777765442211 0000 011 1111 111
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchhHHHHHHHHhH----Hh
Q 000968 800 IIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY----RG 875 (1207)
Q Consensus 800 ~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~~----~~ 875 (1207)
++.+..|++..++..+..- ..+. .......+...+|+ + .+++++-...+ ..
T Consensus 253 lla~~~y~~G~ll~~~i~i---h~~a-----~mIi~~~i~K~~~l------------v-----P~~~e~~a~~~~~f~~~ 307 (414)
T PF03390_consen 253 LLACSFYILGVLLSKLIGI---HAYA-----WMIILVAIVKAFGL------------V-----PESLEEGAKQWYKFFSK 307 (414)
T ss_pred HHHHHHHHHHHHHHHhcCC---cHHH-----HHHHHHHHHHHhCc------------C-----CHHHHHHHHHHHHHHHH
Confidence 2223333333333333311 1111 11222233344443 1 22333333332 34
Q ss_pred HHHHHHHHHHcCc-cChhhhccchhh-HHHHHHHHHHHHHHHHHHHHHhhCcchhh-hhhhhhhcCCCcc-hhhHHHHHH
Q 000968 876 LLLGLFFMTVGMS-IDPKLLLSNFPV-ITGALGLLIGGKTILVALVGRLFGVSVIS-AIRTGLLLAPGGE-FAFVAFGEA 951 (1207)
Q Consensus 876 ~flplFFv~IGm~-Idl~~L~~~~~~-illlllllll~K~l~v~l~~~l~g~~~re-al~lGL~La~rGe-~alVLa~la 951 (1207)
-+.+..-+-+|+. +|+..+...+.. .+++++..+++-.++.++.+++.|+-+-| ++..|+.++.+|. -.+.+++.+
T Consensus 308 ~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa 387 (414)
T PF03390_consen 308 NLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAA 387 (414)
T ss_pred HHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehh
Confidence 4455666778888 888888764422 23444566677778889999999986555 5566767655544 445555555
Q ss_pred Hhhccc
Q 000968 952 VNQGIM 957 (1207)
Q Consensus 952 l~~glI 957 (1207)
-.++++
T Consensus 388 ~RM~Lm 393 (414)
T PF03390_consen 388 NRMELM 393 (414)
T ss_pred hhcccc
Confidence 555554
No 102
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.00 E-value=0.093 Score=63.31 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=64.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
..++|+|||.+|+.+++.|+..|.+|+++|.|+.+.......|+.+. + ++++ ++.+|.+|.++++. +..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-----~---l~ea-l~~aDVVI~aTG~~--~vI 281 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-----T---MEEA-AELGDIFVTATGNK--DVI 281 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-----C---HHHH-HhCCCEEEECCCCH--HHH
Confidence 46999999999999999999999999999999988766666665543 1 1222 35789998887653 222
Q ss_pred HHHHHHHhCCCceEEE--eeCChHHHHHHHhC
Q 000968 1090 TVWALSKYFPNVKTFV--RAHDIDHGLNLEKA 1119 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIa--Ra~d~~~~~~L~~a 1119 (1207)
-....+.+-+...++- +-.++-+...|++.
T Consensus 282 ~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 282 TAEHMEAMKDGAILANIGHFDNEIDVAALEEL 313 (425)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccChHHHhhc
Confidence 2233444444433332 22333344444443
No 103
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.92 E-value=5 Score=50.17 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=51.9
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000968 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEA 343 (1207)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m~~ae~av~~e~e~ 343 (1207)
+++++.=-.-||-|+..++-+..-+.++.++|...++||.... |++|-.|.++-+..-+|... -+.|=+.|=+-
T Consensus 512 ~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~-----a~qat~d~a~~Dlqk~nrlk-Qdear~~~~~l 585 (961)
T KOG4673|consen 512 RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL-----AEQATNDEARSDLQKENRLK-QDEARERESML 585 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHhhhhhhhhHHHHhhhh-hhHHHHHHHHH
Confidence 3455555566777888888888888888888888888876543 33333333333333333322 22344444444
Q ss_pred hhhcccHHHHHHHHHH
Q 000968 344 TQRVNDAEIALQRAEK 359 (1207)
Q Consensus 344 ~~~~~~~~~~~~~~~~ 359 (1207)
.|.|.|-..+|+|+|.
T Consensus 586 vqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 586 VQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 104
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.92 E-value=0.13 Score=52.66 Aligned_cols=107 Identities=13% Similarity=-0.038 Sum_probs=67.2
Q ss_pred ccccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch-
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA- 1086 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~- 1086 (1207)
.+++|+|.|.+|+.+++.|.+.+ ..++++|+++++.+...+ .+...+.-+..+.+.+ ++++|.||.+++.+..
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL----LAEADLIINTTPVGMKP 95 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc----cccCCEEEeCcCCCCCC
Confidence 46899999999999999999985 789999999988766533 2321111123333222 6899999999988754
Q ss_pred --hHHHHHHHHHhCCCceEEEeeCCh---HHHHHHHhCCCC
Q 000968 1087 --NYRTVWALSKYFPNVKTFVRAHDI---DHGLNLEKAGAT 1122 (1207)
Q Consensus 1087 --Ni~i~l~aR~l~P~i~IIaRa~d~---~~~~~L~~aGAd 1122 (1207)
+.... .....|...++-....+ .-...+++.|+.
T Consensus 96 ~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAK 134 (155)
T ss_pred CCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCc
Confidence 21111 12233443333333223 456677888874
No 105
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.90 E-value=0.41 Score=53.25 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=88.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeE-eecC----------ChHHHHhhhhC-CCCEEE--ecCCCHHHHHhcCccccC
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFV-ALDV----------RSDRVAIGRAL-DLPVYF--GDAGSREVLHKVGAERAC 1075 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vv-VID~----------D~e~ve~~r~~-g~~vi~--GDatd~evL~~AgI~~A~ 1075 (1207)
.+++|.|+|.+|+.+++.|.+.|..++ +.|. |++.+...+.. |.-.-+ +....++.+.. .++|
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---~~~D 108 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---LDCD 108 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---eccc
Confidence 578999999999999999999999999 8888 77777655432 211111 11112222222 2788
Q ss_pred EEEEecCCcchhHHHHHHHHHhCCCceEEEeeCC----hHHHHHHHhCCCCeeecCCcH-HHHHHHHHHHHH------cC
Q 000968 1076 AAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATAVVPETLE-PSLQLAAAVLAQ------AK 1144 (1207)
Q Consensus 1076 ~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d----~~~~~~L~~aGAd~VI~p~~e-aal~La~~iL~~------lg 1144 (1207)
.++=++..+..|-..+..++ +++|+..-+ ++..+.|++-|+-+ .|.+. -+-.+...-+.. ..
T Consensus 109 vlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~t~~a~~~L~~rGi~~--~PD~~aNaGGvi~s~~E~~~~~~~~~ 181 (227)
T cd01076 109 ILIPAALENQITADNADRIK-----AKIIVEAANGPTTPEADEILHERGVLV--VPDILANAGGVTVSYFEWVQNLQGFY 181 (227)
T ss_pred EEEecCccCccCHHHHhhce-----eeEEEeCCCCCCCHHHHHHHHHCCCEE--EChHHhcCcchhhhHHHHhhhhccCc
Confidence 88877766666655544442 678887664 67888999988653 23332 222222222222 25
Q ss_pred CCHHHHHHHHH-HHHHhcHHHHHHH
Q 000968 1145 LPASEIAATIN-EFRTRHLSELTEL 1168 (1207)
Q Consensus 1145 ~~~~ei~~~i~-~~r~~~~~~L~~~ 1168 (1207)
..++++..-++ .++....+.++..
T Consensus 182 ~~~~~v~~~l~~~i~~~~~~v~~~a 206 (227)
T cd01076 182 WDEEEVNSRLETKMREAFEAVLETA 206 (227)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655655555 5555444444443
No 106
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=93.89 E-value=12 Score=44.23 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHHhhcccc-hhHHHHHHHHhHHhHH----HHHHHHHHcCc-cChhhhccch-hhHHHHHHHHHHHHHHH
Q 000968 843 GLSMALGAFLAGLLLAETE-FSLQVESDIAPYRGLL----LGLFFMTVGMS-IDPKLLLSNF-PVITGALGLLIGGKTIL 915 (1207)
Q Consensus 843 GLS~~LGAFvAGLvLsn~~-~~~~l~e~l~~~~~~f----lplFFv~IGm~-Idl~~L~~~~-~~illlllllll~K~l~ 915 (1207)
++|+..-..+.|.++.... ..+++++....+..|+ ....|+-+|+. +|++.+.+.+ +..+++++..+++-.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 5566667777777766543 4455565555554343 33344445776 7888887744 33445556667777888
Q ss_pred HHHHHHhhCcchhhh-hhhhhhcCCCcc-hhhHHHHHHHhhccc
Q 000968 916 VALVGRLFGVSVISA-IRTGLLLAPGGE-FAFVAFGEAVNQGIM 957 (1207)
Q Consensus 916 v~l~~~l~g~~~rea-l~lGL~La~rGe-~alVLa~lal~~glI 957 (1207)
.++.++++|+-+-|+ +..|+.++.+|. -.+.++..+-.++++
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 899999999866664 555667655544 445555555555554
No 107
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.80 E-value=0.14 Score=60.63 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=79.7
Q ss_pred ccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhhhh----CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1012 IILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~r~----~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
|+|+|+|.+|+.+++.|.+... ++++.|+|+++.+.... ..+..+.-|..|++.|+++ +.++|.||-+.+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dvVin~~gp~- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDVVINCAGPF- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSEEEE-SSGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCEEEECCccc-
Confidence 5789999999999999998764 79999999999877743 4788999999999998888 88889999888766
Q ss_pred hhHHHHHHHHHhCCCceEEEeeC----ChHHHHHHHhCCCCeeecCCc
Q 000968 1086 ANYRTVWALSKYFPNVKTFVRAH----DIDHGLNLEKAGATAVVPETL 1129 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l~P~i~IIaRa~----d~~~~~~L~~aGAd~VI~p~~ 1129 (1207)
.+..++.++-+..-+ .+=... -.......+++|...++.-.+
T Consensus 79 ~~~~v~~~~i~~g~~--yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~ 124 (386)
T PF03435_consen 79 FGEPVARACIEAGVH--YVDTSYVTEEMLALDEEAKEAGVTALPGCGF 124 (386)
T ss_dssp GHHHHHHHHHHHT-E--EEESS-HHHHHHHCHHHHHHTTSEEE-S-BT
T ss_pred hhHHHHHHHHHhCCC--eeccchhHHHHHHHHHHHHhhCCEEEeCccc
Confidence 777777777776643 222211 133445556788877774333
No 108
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.78 E-value=0.12 Score=50.21 Aligned_cols=78 Identities=14% Similarity=-0.000 Sum_probs=58.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+++|+|.|++|..-++.|.+.|-.++++..+.+..+ ..+. +..+.. + ..++.++.|+++++|++.|-.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~-~~~~~~-----~-~~l~~~~lV~~at~d~~~n~~ 76 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQ-LIRREF-----E-EDLDGADLVFAATDDPELNEA 76 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCE-EEESS------G-GGCTTESEEEE-SS-HHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHH-HHhhhH-----H-HHHhhheEEEecCCCHHHHHH
Confidence 4799999999999999999999999999998862222 2222 233322 2 447889999999999999999
Q ss_pred HHHHHHHhC
Q 000968 1090 TVWALSKYF 1098 (1207)
Q Consensus 1090 i~l~aR~l~ 1098 (1207)
+...+|+.+
T Consensus 77 i~~~a~~~~ 85 (103)
T PF13241_consen 77 IYADARARG 85 (103)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhCC
Confidence 999998765
No 109
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.71 E-value=1.9 Score=46.00 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=67.5
Q ss_pred CCchHHHHHHHHHhhccccc--ccccCchhHHHHHHHHHHHHHHHHhhccChhHHHh---chhhHHHHHHHHHHHHHHHH
Q 000968 625 GGSPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS---MKKYVFGLGSAQVLVTAVVV 699 (1207)
Q Consensus 625 ~lP~IVGyLLaGILLGP~gL--glI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~---~~k~il~Lg~l~vllt~vlv 699 (1207)
++-...|-+++|+++|...- .+..+....+.+.++|+.++++.+|++--..-+.. .+.+.+.++++-.+++.++.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~ 101 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIA 101 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44445699999999996421 11124455689999999999999999988775554 33444555555555555444
Q ss_pred HHHHHHHhCCChHHHHHHhhc-cccCcHHHHHHHHHh
Q 000968 700 GLVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQE 735 (1207)
Q Consensus 700 glll~~llGls~~~ALlLGai-lS~TStAVVl~IL~e 735 (1207)
.++.++++++++... .|.. =+.|+|+..-...+.
T Consensus 102 ~~~~~~~~~l~~~~~--~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 102 LVIGRYLFKLNPGIA--AGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHcCCCHHHH--HHHHHccccCcHHHHHHHHh
Confidence 455555888886542 2222 244666554444433
No 110
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.66 E-value=0.54 Score=53.71 Aligned_cols=103 Identities=20% Similarity=0.132 Sum_probs=67.1
Q ss_pred ccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH--
Q 000968 1014 LCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV-- 1091 (1207)
Q Consensus 1014 IiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~-- 1091 (1207)
++|.|.+|..+++.|.+.|+++++.|+++++++.+.+.|... ..++. + -++++|.|+++++++..-..+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---~-~~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQA----AASPA---E-AAEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCee----cCCHH---H-HHhcCCEEEEeCCChHHHHHHHcC
Confidence 589999999999999999999999999999998888776532 11222 1 2457899999998865433332
Q ss_pred -HHHH-HhCCCceEEEe--eCChHHH----HHHHhCCCCeee
Q 000968 1092 -WALS-KYFPNVKTFVR--AHDIDHG----LNLEKAGATAVV 1125 (1207)
Q Consensus 1092 -l~aR-~l~P~i~IIaR--a~d~~~~----~~L~~aGAd~VI 1125 (1207)
..+. ...|+ ++++- +.+++.. +.+++.|+++|-
T Consensus 73 ~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 73 DEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred cchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 1222 23343 33333 3344433 344556776554
No 111
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=93.66 E-value=18 Score=42.40 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-ccc------CchhHHHHHHH------HHHHHHHHHhhccCh
Q 000968 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-IIR------HVHGTKAIAEF------GVVFLLFNIGLELSV 674 (1207)
Q Consensus 608 lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLg-lI~------~~~~l~~LaeL------GLv~LLF~aGLEldl 674 (1207)
+.++++.++.++..|-.-=|-++--|-.|+++.+..+. ..+ ....+..+-+. .-.++.+-+|--+|+
T Consensus 6 vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtDF 85 (360)
T PF03977_consen 6 VMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTDF 85 (360)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHhh
Confidence 44455666666666542356677778889988854322 211 11223333333 345666788999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH
Q 000968 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1207)
Q Consensus 675 ~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAV 728 (1207)
.-+..+.+..+..+..|+-+- .++....++|++..+|..+|.+-..=.|..
T Consensus 86 gpllanP~~~llGaaAQ~Gif---~t~~~A~~lGf~~~eAAsIgIIGgADGPts 136 (360)
T PF03977_consen 86 GPLLANPKTLLLGAAAQFGIF---ATFLGAILLGFTPKEAASIGIIGGADGPTS 136 (360)
T ss_pred HHHHhCHHHHHHHHHHHHhHH---HHHHHHHHhCCCHHHhhHhhhcccCCCcHH
Confidence 999999998776666665432 233334456999999998888766544443
No 112
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.62 E-value=0.29 Score=54.37 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=79.3
Q ss_pred ccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHHHH
Q 000968 1014 LCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWA 1093 (1207)
Q Consensus 1014 IiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~l~ 1093 (1207)
.+|.||+|.++++.|.+.|+++++.|.|++.++.+...| ..|-.+-.+.+.+.+..++-.+.++..+...++.--+
T Consensus 5 miGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l- 80 (300)
T COG1023 5 MIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL- 80 (300)
T ss_pred eeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH-
Confidence 589999999999999999999999999999999998887 4555566788899999988888887776544432222
Q ss_pred HHHhCCCceEEEeeCCh---HH---HHHHHhCCCCeeecCC
Q 000968 1094 LSKYFPNVKTFVRAHDI---DH---GLNLEKAGATAVVPET 1128 (1207)
Q Consensus 1094 aR~l~P~i~IIaRa~d~---~~---~~~L~~aGAd~VI~p~ 1128 (1207)
+-.+.+. .+|.---+. +. ...+++.|.+.+-.-+
T Consensus 81 a~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GT 120 (300)
T COG1023 81 APLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGT 120 (300)
T ss_pred HhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEeccC
Confidence 2234433 566554433 33 3336667877765443
No 113
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.59 E-value=0.4 Score=54.02 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=71.7
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
+.+++|+|.|.+++.+++.+...|+.|+++|.+++.....+..+...+..+. -.+.+.. +..-+++|+.+.+...-.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~t~vvi~th~h~~D~ 176 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVAE--APPGSYFLVLTHDHALDL 176 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHhc--CCCCcEEEEEeCChHHHH
Confidence 4689999999999999999999999999999988744332223333233222 1334443 456778888888876665
Q ss_pred HHHHHHHHhCCCceEEEeeCChHH---HHHHHhCCC
Q 000968 1089 RTVWALSKYFPNVKTFVRAHDIDH---GLNLEKAGA 1121 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~d~~~---~~~L~~aGA 1121 (1207)
.+...+-+..|-.+|=+.-..+.. .+.|++.|.
T Consensus 177 ~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 177 ELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 555555433343466665554443 445566664
No 114
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.59 E-value=0.44 Score=54.39 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=69.2
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
+-|+|.|.+|..+++.|.+.|++|+++|+++++.+.+...|.... ++++ + -++++|.|+++++++.....+.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~~~---~-~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTA----ETAR---Q-VTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCccc----CCHH---H-HHhcCCEEEEecCCHHHHHHHH
Confidence 568899999999999999999999999999999988877664321 2221 1 1357899999998763322222
Q ss_pred H----HHHHhCCCceEEEeeC--ChH----HHHHHHhCCCCeeecC
Q 000968 1092 W----ALSKYFPNVKTFVRAH--DID----HGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1092 l----~aR~l~P~i~IIaRa~--d~~----~~~~L~~aGAd~VI~p 1127 (1207)
. ......|+ .+++... .+. -...+++.|+..+-.|
T Consensus 74 ~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 74 FGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 1 12223444 4555432 232 3344556677655544
No 115
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.57 E-value=0.2 Score=57.82 Aligned_cols=111 Identities=20% Similarity=0.142 Sum_probs=76.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+++|+|+|++|+.++..|+..|..++++|++++..+..+..|..++. .+.+. ..+.++|.||.+++....+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~-~~l~~aDiVI~t~p~~~i~-- 224 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFH-----LSELA-EEVGKIDIIFNTIPALVLT-- 224 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHH-HHhCCCCEEEECCChhhhh--
Confidence 579999999999999999999999999999999888777777765432 12222 2356899999988653222
Q ss_pred HHHHHHHhCCCceEEEeeCChHHH--HHHHhCCCCeeecCCc
Q 000968 1090 TVWALSKYFPNVKTFVRAHDIDHG--LNLEKAGATAVVPETL 1129 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~~~~--~~L~~aGAd~VI~p~~ 1129 (1207)
....+.+.|+..+|=.+.++... ...++.|+..+..+.+
T Consensus 225 -~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~~l 265 (296)
T PRK08306 225 -KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAPGL 265 (296)
T ss_pred -HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEECCC
Confidence 22334455665565555554322 3457788888854443
No 116
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.57 E-value=0.2 Score=47.18 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=49.3
Q ss_pred ccccCCCchHHHHHHHHHhcC---CCeEee-cCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1012 IILCGFGRVGQIIAQLLSERL---IPFVAL-DVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~g---i~vvVI-D~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
+.|+|+|.+|..+++.|...| .++.++ ++++++.+.+.+ .+..+... +..++++ ++|.++++++...
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~advvilav~p~~ 73 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD--DNEEAAQ-----EADVVILAVKPQQ 73 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE--EHHHHHH-----HTSEEEE-S-GGG
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC--ChHHhhc-----cCCEEEEEECHHH
Confidence 467899999999999999999 888866 999999987754 44344432 3444444 7889999987753
No 117
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=93.56 E-value=2.7 Score=50.65 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHh--cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHH
Q 000968 611 LASVIFVPIFQK--IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1207)
Q Consensus 611 l~A~ll~~L~~R--l~~lP~IVGyLLaGILLGP~g--LglI~-~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il 685 (1207)
.+++.+...+++ + .+|..++-+++|+++.+.. .+... .....+.++++.+-+++-.+=+.+++..+....-+.+
T Consensus 229 ~iG~~i~~~l~~~~~-~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Pll 307 (398)
T TIGR00210 229 LVGYELNDLVAKTAL-MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIA 307 (398)
T ss_pred HHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 334444444443 4 6899999999999998632 11111 1236789999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHH----HHhhccccCcHHHH-HH-HHHhcCCCCChhhHHHHHHHhhhhHHHH
Q 000968 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAVV-LQ-VLQERGESTSRHGRATFSVLLFQDLAVV 759 (1207)
Q Consensus 686 ~Lg~l~vllt~vlvglll~~llGls~~~AL----lLGailS~TStAVV-l~-IL~elg~l~s~~Grl~Lsvsl~nDi~aI 759 (1207)
.+.+.|++++.+...++.+.++|-+...++ ..|..+.+|.++++ ++ +-++.|..+..+=-+=+--+.+-|++-.
T Consensus 308 iil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~id~~n~ 387 (398)
T TIGR00210 308 LILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFFIDIINA 387 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHHHHHhhH
Confidence 999999998887666677777787755544 46666676777643 33 4455555443332222334566666554
Q ss_pred HHH
Q 000968 760 VLL 762 (1207)
Q Consensus 760 vll 762 (1207)
+++
T Consensus 388 ~~i 390 (398)
T TIGR00210 388 LVI 390 (398)
T ss_pred HHH
Confidence 443
No 118
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.47 E-value=0.19 Score=60.46 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=54.8
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
...++|+|+|.+|+.+++.++..|.+++++|.|+.+.+.++..|..++.- ++. +..+|.+|.++.+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~----~e~-----v~~aDVVI~atG~~ 268 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM----EEA-----VKEGDIFVTTTGNK 268 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH----HHH-----HcCCCEEEECCCCH
Confidence 35799999999999999999999999999999999998888888755421 122 24689998888764
No 119
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.33 E-value=0.22 Score=56.71 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=52.7
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
+|.|+|.|.+|..++..|.+.|.+++++|.+++..+.+...|.... ..++.+ .+.+||.||++++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~--~~~~~~-----~~~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDE--ASTDLS-----LLKDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccc--ccCCHh-----HhcCCCEEEEcCCHHH
Confidence 4778999999999999999999999999999999888877653111 111222 2578999999998764
No 120
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=93.22 E-value=23 Score=42.13 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-----c-----ccC-------------chhHHHHHHHH---
Q 000968 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-----I-----IRH-------------VHGTKAIAEFG--- 660 (1207)
Q Consensus 607 ~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLg-----l-----I~~-------------~~~l~~LaeLG--- 660 (1207)
.+.++++.++-++..|-.-=|-++.-|-.|+++.+..+. . +++ ...+..+-++|
T Consensus 25 ~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi~~ 104 (399)
T TIGR03136 25 LALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTFSN 104 (399)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHHhc
Confidence 445555666666665542346667777888888754221 0 110 11233333333
Q ss_pred ---HHHHHHHHhhccChhHHHhchhhHHH-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH
Q 000968 661 ---VVFLLFNIGLELSVERLSSMKKYVFG-LGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1207)
Q Consensus 661 ---Lv~LLF~aGLEldl~~Lr~~~k~il~-Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAV 728 (1207)
-.++.+-+|--+|+.-+..+.+..+. .+..|+-+- +++....++|++..+|..+|.+-.+=.|..
T Consensus 105 gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF---~t~~~A~~lGF~~~eAAsIgIIGgADGPTa 173 (399)
T TIGR03136 105 SLVACILFFGIGAMSDISFILARPWASITVALFAEMGTF---ATLVIGYYCGLTPGEAAAVGTIGGADGPMV 173 (399)
T ss_pred ccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHH---HHHHHHHHcCCCHHHhhHHhhcccCCccHH
Confidence 34556678889999999999988777 355665432 222333457999999988888766544443
No 121
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.21 E-value=0.31 Score=54.90 Aligned_cols=114 Identities=17% Similarity=0.054 Sum_probs=74.8
Q ss_pred ccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcC-----ccc-cCEEEEecCCc
Q 000968 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG-----AER-ACAAAITLDTP 1084 (1207)
Q Consensus 1012 VIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~Ag-----I~~-A~~VViatddd 1084 (1207)
++|.|. |.+|+.+++.|.+.|++|.++.++++... ..+..++.||..|++.|.++= +.. ++.++.+.+..
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 456665 99999999999999999999999987643 347788899999999998752 244 78877665532
Q ss_pred c----hhHHHHHHHHHhCCCceEEEeeC-C--------hHHHHHHHhC-CCCeee-cCCc
Q 000968 1085 G----ANYRTVWALSKYFPNVKTFVRAH-D--------IDHGLNLEKA-GATAVV-PETL 1129 (1207)
Q Consensus 1085 ~----~Ni~i~l~aR~l~P~i~IIaRa~-d--------~~~~~~L~~a-GAd~VI-~p~~ 1129 (1207)
. .-..++..+++.+-+ ++|.... . ......++.. |.+.++ +|..
T Consensus 79 ~~~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~~ 137 (285)
T TIGR03649 79 PDLAPPMIKFIDFARSKGVR-RFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPTW 137 (285)
T ss_pred CChhHHHHHHHHHHHHcCCC-EEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEeccH
Confidence 1 122344556666543 3333221 0 0112445565 887765 6653
No 122
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.19 E-value=1 Score=59.94 Aligned_cols=114 Identities=14% Similarity=0.088 Sum_probs=85.8
Q ss_pred ccccccccCCCchHHHHHHHHHhc-CCC-------------eEeecCChHHHHhhhh-C-CCCEEEecCCCHHHHHhcCc
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSER-LIP-------------FVALDVRSDRVAIGRA-L-DLPVYFGDAGSREVLHKVGA 1071 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~-gi~-------------vvVID~D~e~ve~~r~-~-g~~vi~GDatd~evL~~AgI 1071 (1207)
...+|+|+|.|++|+.+++.|.+. ++. ++|.|.++++.+.+.+ . +...+.-|.+|.+-|.++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~-v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY-V 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh-h
Confidence 356899999999999999999763 333 8999999988876643 2 677899999999988775 4
Q ss_pred cccCEEEEecCCcchhHHHHHHHHHhCCCceEEEeeCChHHHH----HHHhCCCCeee
Q 000968 1072 ERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGL----NLEKAGATAVV 1125 (1207)
Q Consensus 1072 ~~A~~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~----~L~~aGAd~VI 1125 (1207)
..+|+||++++.. .+..++..+-+... +++....+.+... ..+++|+..++
T Consensus 647 ~~~DaVIsalP~~-~H~~VAkaAieaGk--Hvv~eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 647 SQVDVVISLLPAS-CHAVVAKACIELKK--HLVTASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred cCCCEEEECCCch-hhHHHHHHHHHcCC--CEEECcCCHHHHHHHHHHHHHcCCEEEE
Confidence 5699999999885 56777777777764 4566666666554 44566766555
No 123
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.13 E-value=0.35 Score=58.37 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=55.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHH---hcC-------ccccCEEEE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH---KVG-------AERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~---~Ag-------I~~A~~VVi 1079 (1207)
.++.|+|.|.+|..++..|.+.|++|+++|.|+++++.++....++. ++.-.+.+. +.| +++||.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIV--EPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcC--CCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 35889999999999999999999999999999999998655444432 222223332 112 458999999
Q ss_pred ecCCc
Q 000968 1080 TLDTP 1084 (1207)
Q Consensus 1080 atddd 1084 (1207)
+++++
T Consensus 82 ~vptp 86 (415)
T PRK11064 82 AVPTP 86 (415)
T ss_pred EcCCC
Confidence 99886
No 124
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.12 E-value=0.7 Score=52.77 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=70.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
++-|+|.|.+|..+++.|...|+++++.|+++++.+.+...|..+. .+.+-+ ++++|.|+++++++.....+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~----~~~~e~----~~~~d~vi~~vp~~~~~~~v 75 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA----STAKAV----AEQCDVIITMLPNSPHVKEV 75 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeec----CCHHHH----HhcCCEEEEeCCCHHHHHHH
Confidence 5789999999999999999999999999999999888776664321 222221 25789999999876543333
Q ss_pred HH----HHHHhCCCceEEEeeC--ChHH----HHHHHhCCCCeeecC
Q 000968 1091 VW----ALSKYFPNVKTFVRAH--DIDH----GLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1091 ~l----~aR~l~P~i~IIaRa~--d~~~----~~~L~~aGAd~VI~p 1127 (1207)
.. ......|+ .+|+-.. .+.. ...+.+.|+..+-.|
T Consensus 76 ~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 76 ALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred HcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 21 12333444 4555433 3332 233455577665555
No 125
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.07 E-value=2.9 Score=52.57 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhhccccc-ccc---cCchhHHHHHHHHHHHHHHHHhhccChhHHH---hchhhHHHHHHHHHHHHHHHHH
Q 000968 628 PVLGYLAAGILIGPYGL-SII---RHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKYVFGLGSAQVLVTAVVVG 700 (1207)
Q Consensus 628 ~IVGyLLaGILLGP~gL-glI---~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr---~~~k~il~Lg~l~vllt~vlvg 700 (1207)
...|-+++|+++|..+- +.. -+.....++.++|+.++++.+|+.--...+. +.+...+.++++-.+++.++..
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~ 496 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITM 496 (562)
T ss_pred hhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35688999999996431 111 1223345799999999999999998776554 4444445555555555555555
Q ss_pred HHHHHHhCCChHHHHHHhh-ccccCcHHHHHHHHHhc
Q 000968 701 LVAHFVSGLPGPASIVIGN-GLALSSTAVVLQVLQER 736 (1207)
Q Consensus 701 lll~~llGls~~~ALlLGa-ilS~TStAVVl~IL~el 736 (1207)
++.++++++++.. ..|+ +=+.|+|+..-......
T Consensus 497 ~~~~~~~~~~~~~--~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 497 LIGKYVLKYDPAL--LLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHhCCCHHH--HHHHhhccCCCcHHHHHHHHhc
Confidence 5666788888663 3443 34667777665555443
No 126
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.06 E-value=0.27 Score=56.87 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=64.7
Q ss_pred cccccCCCchHHHHHHHHHhcC--CCeEeecCChHHHHhhhhC--------CCC-EEEecCCCHHHHHhcCccccCEEEE
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRAL--------DLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve~~r~~--------g~~-vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
++.|+|.|.+|..++..|...| ..++++|.++++.+..... +.. .+.+ .+.+ .+.+||.+|+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~~-----~l~~aDIVIi 74 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDYS-----DCKDADIVVI 74 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCHH-----HhCCCCEEEE
Confidence 5889999999999999999988 4799999998876533211 212 1222 2222 2479999999
Q ss_pred ecCCc-----------chhH----HHHHHHHHhCCCceEEEeeCChH
Q 000968 1080 TLDTP-----------GANY----RTVWALSKYFPNVKTFVRAHDID 1111 (1207)
Q Consensus 1080 atddd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~ 1111 (1207)
+++.+ ..|. .++..+++.+|+..+++-+ ++.
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs-NP~ 120 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS-NPV 120 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec-ChH
Confidence 99874 2343 4456788889998666555 443
No 127
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=92.93 E-value=7.6 Score=41.70 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhccChhHHHhchhhHHH---HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-HHHHHHHH
Q 000968 659 FGVVFLLFNIGLELSVERLSSMKKYVFG---LGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-AVVLQVLQ 734 (1207)
Q Consensus 659 LGLv~LLF~aGLEldl~~Lr~~~k~il~---Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TSt-AVVl~IL~ 734 (1207)
+.+.++||..|++++++++++..|+... .-+.++++.-++...+.+.+++.++. +.+|.++...+| +....+..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~--~~~Gl~l~~~~P~~~~s~~~t 79 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPA--LALGLLLVAACPGGPASNVFT 79 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HH--HHHHHHHHHHS-B-THHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHhcCCcHHHHHHHH
Confidence 4678899999999999999977654332 22334444333222233244455443 444444444344 23333444
Q ss_pred hcCCCCChhhHHHHHHHhhhhHHHHHHH
Q 000968 735 ERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1207)
Q Consensus 735 elg~l~s~~Grl~Lsvsl~nDi~aIvll 762 (1207)
.....+. .+..+...++.+.+++++
T Consensus 80 ~l~~Gd~---~ls~~lt~istll~~~~~ 104 (187)
T PF01758_consen 80 YLAGGDV---ALSVSLTLISTLLAPFLM 104 (187)
T ss_dssp HHTT--H---HHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCc---ccccceeeHHHHHHHHHH
Confidence 3322111 233344556666555554
No 128
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.86 E-value=0.24 Score=56.95 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=52.8
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEE--------e--cCCCHHHHHhcCccccCEEEEe
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--------G--DAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~--------G--Datd~evL~~AgI~~A~~VVia 1080 (1207)
++.|+|.|.+|..++..|.+.|+++.++|++++.++.++..+....+ | -..+++ + -++.+|.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLA---E-ALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHH---H-HHhCCCEEEEe
Confidence 47899999999999999999999999999999998877765432211 0 012222 1 13578999999
Q ss_pred cCCcc
Q 000968 1081 LDTPG 1085 (1207)
Q Consensus 1081 tddd~ 1085 (1207)
+++..
T Consensus 79 v~~~~ 83 (325)
T PRK00094 79 VPSQA 83 (325)
T ss_pred CCHHH
Confidence 98853
No 129
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=92.79 E-value=1.5 Score=51.33 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHh
Q 000968 602 SLFDVLWLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1207)
Q Consensus 602 ~Ll~l~lLLl~A~ll~~L~~Rl~~lP--~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~ 679 (1207)
.+..+.+++.++.+.+.+++|+ ++| .++|-++++.++.-.+.. +......+..++.+++-..+|..++...++.
T Consensus 153 ~~~~l~~l~~~~~~g~~l~~~l-~iPa~~llGpml~~a~~~~~~~~---~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~ 228 (318)
T PF05145_consen 153 SWLWLALLALAALAGGLLARRL-RIPAPWLLGPMLVSAILNLFGGP---SFSLPPWLVNAAQVLIGASIGSRFTRETLRE 228 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 3455677777888899999998 877 467777777777654222 1233467788888888999999999999988
Q ss_pred chhhHHHH--HHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 000968 680 MKKYVFGL--GSAQVLVTAVVVGLVAHFVSGLPGPASIVI 717 (1207)
Q Consensus 680 ~~k~il~L--g~l~vllt~vlvglll~~llGls~~~ALlL 717 (1207)
.++..... .++..++..++.+++++.+.|+++..+++-
T Consensus 229 ~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La 268 (318)
T PF05145_consen 229 LRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA 268 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77654332 222223334456666777788888776653
No 130
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.77 E-value=0.58 Score=57.46 Aligned_cols=109 Identities=14% Similarity=0.080 Sum_probs=71.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC----CCCEEEecCCCH-HHHHhcCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSR-EVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~----g~~vi~GDatd~-evL~~AgI~~A~~VViatddd~ 1085 (1207)
++-|+|.|.+|..+++.|.+.|++|++.|+++++++.+.+. |..+ .+ ..++ +... .+++++.|+++..++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v~--~l~~~d~Iil~v~~~~ 78 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELVN--SLKKPRKVILLIKAGE 78 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHHh--cCCCCCEEEEEeCChH
Confidence 57799999999999999999999999999999998877643 4322 22 2233 2222 2347888888876665
Q ss_pred hhHHHHHHHH-HhCCCceEEEeeCC------hHHHHHHHhCCCCee
Q 000968 1086 ANYRTVWALS-KYFPNVKTFVRAHD------IDHGLNLEKAGATAV 1124 (1207)
Q Consensus 1086 ~Ni~i~l~aR-~l~P~i~IIaRa~d------~~~~~~L~~aGAd~V 1124 (1207)
....++..+. .+.|+ +||+-..+ .+....+++.|+.++
T Consensus 79 ~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fl 123 (470)
T PTZ00142 79 AVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYL 123 (470)
T ss_pred HHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 5444443333 33444 56655543 234455566666554
No 131
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.76 E-value=1.4 Score=46.31 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhhccccc-cccc---CchhHHHHHHHHHHHHHHHHhhccChhHHHhchh----hHHHHHHHHHHHHHHHH
Q 000968 628 PVLGYLAAGILIGPYGL-SIIR---HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK----YVFGLGSAQVLVTAVVV 699 (1207)
Q Consensus 628 ~IVGyLLaGILLGP~gL-glI~---~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k----~il~Lg~l~vllt~vlv 699 (1207)
...|-+++|+++|..+- +.+. +......+.++|+.++++.+|++--..-+...++ ..+.++.+-.+++.+++
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 36688999999986431 1111 2335678999999999999999988876654433 23334444444555556
Q ss_pred HHHHHHHhCCChHHHHHHhhc-cccCcHHHHHHHHHh
Q 000968 700 GLVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQE 735 (1207)
Q Consensus 700 glll~~llGls~~~ALlLGai-lS~TStAVVl~IL~e 735 (1207)
.++.++++++++.. ..|.+ =+.|+|+..-...+.
T Consensus 103 ~~~~~~~~~~~~~~--~~G~~aGa~T~tpaL~aa~~~ 137 (154)
T TIGR01625 103 AVALIKLLRINYAL--TAGMLAGATTNTPALDAANDT 137 (154)
T ss_pred HHHHHHHhCCCHHH--HHHHHhccccChHHHHHHHHH
Confidence 66667788888753 33333 456777766555543
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.71 E-value=5.3 Score=52.50 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=37.2
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000968 268 GLLLAAENDIKECQANLANCETELRRL-------QSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIM 330 (1207)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m 330 (1207)
.|+.-|-+||+..|..|++-++|.+.- ..+..||.+.|..|.-++.+--.+|..||+.|-.+-
T Consensus 1584 ~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1584 DAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 556666666666666666666655544 445556666666666655555555555555554443
No 133
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.65 E-value=0.55 Score=53.98 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=52.9
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
++-++|.|.+|..+++.|.+.|+++++.|+++++.+.+...|... ..++. ++ ++.+|.|+++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~----~~s~~---~~-~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATP----AASPA---QA-AAGAEFVITMLPNGD 69 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcc----cCCHH---HH-HhcCCEEEEecCCHH
Confidence 477899999999999999999999999999999998887766432 12222 11 357789999998874
No 134
>PRK03818 putative transporter; Validated
Probab=92.59 E-value=3 Score=52.34 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHhhccccc-ccc---cCchhHHHHHHHHHHHHHHHHhhccC
Q 000968 604 FDVLWLLLASVIFVPIFQKIPGGSP------VLGYLAAGILIGPYGL-SII---RHVHGTKAIAEFGVVFLLFNIGLELS 673 (1207)
Q Consensus 604 l~l~lLLl~A~ll~~L~~Rl~~lP~------IVGyLLaGILLGP~gL-glI---~~~~~l~~LaeLGLv~LLF~aGLEld 673 (1207)
..+.+.++++.++|.+--++++.|. .-|-+++|+++|.... +.+ -+......+.++|+.+++..+|++--
T Consensus 372 ~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG 451 (552)
T PRK03818 372 LPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSG 451 (552)
T ss_pred HHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 3345555566666665555545543 4579999999997432 111 12234578999999999999999887
Q ss_pred hhHHHh----chhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-hccccCcHHHHHHHH
Q 000968 674 VERLSS----MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLALSSTAVVLQVL 733 (1207)
Q Consensus 674 l~~Lr~----~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLG-ailS~TStAVVl~IL 733 (1207)
...+.. .+...+.++.+-.+++.++..++.++++++++. ..+| .+=+.|+|+....+.
T Consensus 452 ~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 452 GDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYL--TLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhccCCCcHHHHHHh
Confidence 765554 344455555555555555555555778899876 3444 335667777665544
No 135
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.56 E-value=0.69 Score=51.28 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=55.9
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh--CCCCEEEecCCC-HHHHHhcCccccCEEEEecCC
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGS-REVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~--~g~~vi~GDatd-~evL~~AgI~~A~~VViatdd 1083 (1207)
..++|+| .|.+|+.+++.|.+.|++|+++.+++++...... .++.++.||.++ .+.|.++-...+|.||..+..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 4688888 5999999999999999999999888877654332 357889999998 455544322468888877643
No 136
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.49 E-value=0.83 Score=56.10 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=71.5
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCC--EEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLP--VYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~--vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
+-++|.|.+|..+++.|.+.|+++++.|+++++++.+.+.+.+ -+.+ ..+++-+-+ .+++++.|+++++++...-.
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~-~~s~~e~v~-~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVG-AYSIEEFVQ-SLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCcee-cCCHHHHHh-hcCCCCEEEEECCCcHHHHH
Confidence 5589999999999999999999999999999999888654110 1111 223332221 24678988988888654444
Q ss_pred HHHHHHH-hCCCceEEEeeCC------hHHHHHHHhCCCCeeec
Q 000968 1090 TVWALSK-YFPNVKTFVRAHD------IDHGLNLEKAGATAVVP 1126 (1207)
Q Consensus 1090 i~l~aR~-l~P~i~IIaRa~d------~~~~~~L~~aGAd~VI~ 1126 (1207)
++..+.. +.|+ ++|+-..+ .+....+++.|+.+|=.
T Consensus 80 Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvda 122 (467)
T TIGR00873 80 VINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGS 122 (467)
T ss_pred HHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcC
Confidence 4333333 3444 56665543 22345556666655443
No 137
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.46 E-value=0.26 Score=59.53 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=61.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCCh-HHH----HhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRV----AIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~-e~v----e~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
..++|+|.|+.|..+++.|.+.|+.|+++|.++ +.. +++...|..++.+|..+. ....+|.||.+++..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEGVDLVVVSPGVP 79 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------HhhcCCEEEECCCCC
Confidence 468999999999999999999999999999985 323 344566888999998872 245789999988776
Q ss_pred chhHHHHHHHHH
Q 000968 1085 GANYRTVWALSK 1096 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~ 1096 (1207)
..|- .+..+|+
T Consensus 80 ~~~~-~~~~a~~ 90 (450)
T PRK14106 80 LDSP-PVVQAHK 90 (450)
T ss_pred CCCH-HHHHHHH
Confidence 5554 3333343
No 138
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.44 E-value=0.1 Score=56.11 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=50.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcC--------------ccccCE
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--------------AERACA 1076 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~Ag--------------I~~A~~ 1076 (1207)
+|.|+|.|.+|..++-.|.+.|++|+.+|.|+++++.+.+-..++ .++.-++.+++.. +.++|+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~--~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPI--YEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccc--cccchhhhhccccccccchhhhhhhhhhhccce
Confidence 467899999999999999999999999999999999887655555 2555566665443 567999
Q ss_pred EEEecCCc
Q 000968 1077 AAITLDTP 1084 (1207)
Q Consensus 1077 VViatddd 1084 (1207)
++++.+.+
T Consensus 80 ~~I~VpTP 87 (185)
T PF03721_consen 80 VFICVPTP 87 (185)
T ss_dssp EEE----E
T ss_pred EEEecCCC
Confidence 99988765
No 139
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.42 E-value=16 Score=49.22 Aligned_cols=13 Identities=54% Similarity=0.498 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000968 152 ELRELLMNAMKEL 164 (1207)
Q Consensus 152 ~l~~~l~~a~~~~ 164 (1207)
+++.-++...+++
T Consensus 709 ~l~~~~~~~~~~~ 721 (1179)
T TIGR02168 709 ELEEELEQLRKEL 721 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 140
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.34 E-value=4.1 Score=56.51 Aligned_cols=28 Identities=32% Similarity=0.195 Sum_probs=13.8
Q ss_pred HHHHHHhhhcccHHHHHHHHHHhhcCCC
Q 000968 338 AFEIEATQRVNDAEIALQRAEKSLSNSS 365 (1207)
Q Consensus 338 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 365 (1207)
+-.-|.++.+++.|.-+..+++.++...
T Consensus 449 aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544433
No 141
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.33 E-value=0.58 Score=52.54 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=58.2
Q ss_pred ccccCCCchHHHHHHHHHhcCC----CeEee-cCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1012 IILCGFGRVGQIIAQLLSERLI----PFVAL-DVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi----~vvVI-D~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
+-++|+|.+|..+++.|.+.|+ ++++. ++++++.+.+.+.|..+. .+.. + -++++|.|+++++ +..
T Consensus 3 I~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~----~~~~---e-~~~~aDvVil~v~-~~~ 73 (266)
T PLN02688 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA----ASNT---E-VVKSSDVIILAVK-PQV 73 (266)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe----CChH---H-HHhcCCEEEEEEC-cHH
Confidence 6789999999999999999887 78888 999999888777775432 2222 1 1357899999995 444
Q ss_pred hHHHHHHHHHh-CCCceEEEee
Q 000968 1087 NYRTVWALSKY-FPNVKTFVRA 1107 (1207)
Q Consensus 1087 Ni~i~l~aR~l-~P~i~IIaRa 1107 (1207)
...+...++.. .|+ ++++..
T Consensus 74 ~~~vl~~l~~~~~~~-~~iIs~ 94 (266)
T PLN02688 74 VKDVLTELRPLLSKD-KLLVSV 94 (266)
T ss_pred HHHHHHHHHhhcCCC-CEEEEe
Confidence 44443344333 344 444443
No 142
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.27 E-value=0.6 Score=53.75 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
+-++|.|.+|..+++.|.+.|+++++.|.++. .+.+...|.... .++..+ +++++.|+++++++..-..+.
T Consensus 3 Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~v~~~~~v~~v~ 73 (292)
T PRK15059 3 LGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIMVPDTPQVEEVL 73 (292)
T ss_pred EEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEeCCChHHHHHHH
Confidence 67899999999999999999999999999875 455555554321 222221 358899999999875433332
Q ss_pred H----HHHHhCCCceEEEeeC--ChH----HHHHHHhCCCCeeecC
Q 000968 1092 W----ALSKYFPNVKTFVRAH--DID----HGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1092 l----~aR~l~P~i~IIaRa~--d~~----~~~~L~~aGAd~VI~p 1127 (1207)
. .+....|. ++++-.. ++. -...+.+.|+.++-.|
T Consensus 74 ~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP 118 (292)
T PRK15059 74 FGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP 118 (292)
T ss_pred cCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1 12223343 4554444 443 3355567788776655
No 143
>PRK04972 putative transporter; Provisional
Probab=92.09 E-value=1.5 Score=55.01 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhcccc-ccccc---CchhHHHHHHHHHHHHHHHHhhccChh
Q 000968 604 FDVLWLLLASVIFVPIFQKIPGGS----PVLGYLAAGILIGPYG-LSIIR---HVHGTKAIAEFGVVFLLFNIGLELSVE 675 (1207)
Q Consensus 604 l~l~lLLl~A~ll~~L~~Rl~~lP----~IVGyLLaGILLGP~g-LglI~---~~~~l~~LaeLGLv~LLF~aGLEldl~ 675 (1207)
+.+.+-+++++++|.+--+++++| .--|-|++|+++|... .+... +......+.++|+.+++..+|+.--..
T Consensus 384 ~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~ 463 (558)
T PRK04972 384 LAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSG 463 (558)
T ss_pred HHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 445555566666666655554443 2458999999999632 11111 223457899999999999999987665
Q ss_pred HH---HhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-hccccCcHHHHHHHHHh
Q 000968 676 RL---SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLALSSTAVVLQVLQE 735 (1207)
Q Consensus 676 ~L---r~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLG-ailS~TStAVVl~IL~e 735 (1207)
.+ ++.+...+.++.+-.+++.++..++.++++++++. .++| .+=+.|+|+..-.+...
T Consensus 464 f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 464 INNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 44 44455666666666666666666777788999887 3444 33456777765555544
No 144
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.03 E-value=0.57 Score=54.50 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=64.5
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCC----------HHHHHhcCccccCEEEEe
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS----------REVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd----------~evL~~AgI~~A~~VVia 1080 (1207)
+|.|+|.|.+|..++..|.+.|++|+++|+++. .+..+..|..+...+..+ ...++ .+..+|.|+++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vil~ 80 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA--ALATADLVLVT 80 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChh--hccCCCEEEEE
Confidence 688999999999999999999999999998754 455666665443211100 01112 34689999999
Q ss_pred cCCcchhHHHHHHHHHh-CCCceEEEeeCChHHHHHHH
Q 000968 1081 LDTPGANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLE 1117 (1207)
Q Consensus 1081 tddd~~Ni~i~l~aR~l-~P~i~IIaRa~d~~~~~~L~ 1117 (1207)
+..+.. ..++..++.. .++..++.-.+.....+.+.
T Consensus 81 vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~ 117 (341)
T PRK08229 81 VKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLR 117 (341)
T ss_pred ecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHH
Confidence 987643 3344444433 45544444444444444443
No 145
>PRK08017 oxidoreductase; Provisional
Probab=92.00 E-value=0.27 Score=53.96 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=51.7
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHh
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK 1068 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~ 1068 (1207)
..++|.|. |.+|+.+++.|.+.|..++++++++++.+.++..+...+.+|.++++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 35888988 999999999999999999999999998887777788899999999876644
No 146
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=91.94 E-value=31 Score=40.52 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccc---ccccccCchhHHHHHHH------HHHHHHHHHhhccChhHHHh
Q 000968 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPY---GLSIIRHVHGTKAIAEF------GVVFLLFNIGLELSVERLSS 679 (1207)
Q Consensus 609 LLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~---gLglI~~~~~l~~LaeL------GLv~LLF~aGLEldl~~Lr~ 679 (1207)
.++++.++-++..+-.-=|-++--|-.|+++.+. ++|.+.+...+..+-++ .-.++.+-+|--+|+.-+..
T Consensus 5 Mi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgplla 84 (354)
T TIGR01109 5 MLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLA 84 (354)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHh
Confidence 3445555556655542346667777888888743 22333322333333333 33456667889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHhhccccCcH
Q 000968 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGL------PGPASIVIGNGLALSST 726 (1207)
Q Consensus 680 ~~k~il~Lg~l~vllt~vlvglll~~llGl------s~~~ALlLGailS~TSt 726 (1207)
+.+..+..+..|+-+- ++++...++|+ +..+|..+|.+-..-.|
T Consensus 85 nP~~~llGaaAQ~GiF---~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 85 NPRTLLLGAAAQFGIF---ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred ChHHHHHHHHHHhhHH---HHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 9987777776665432 22223334566 55677766665554333
No 147
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.74 E-value=0.3 Score=55.72 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=52.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-------CCCEEEecCCCH-----------HHHHhcCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-------DLPVYFGDAGSR-----------EVLHKVGAE 1072 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-------g~~vi~GDatd~-----------evL~~AgI~ 1072 (1207)
++.|+|.|.+|..++..|...|++|+++|.|++.++.+.+. +. -.|..+.. ..-.+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGV--ARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 58899999999999999999999999999999998775421 10 01111111 001123467
Q ss_pred ccCEEEEecCCcch
Q 000968 1073 RACAAAITLDTPGA 1086 (1207)
Q Consensus 1073 ~A~~VViatddd~~ 1086 (1207)
+||.|+.+++++..
T Consensus 81 ~aD~Vi~avpe~~~ 94 (288)
T PRK09260 81 DADLVIEAVPEKLE 94 (288)
T ss_pred CCCEEEEeccCCHH
Confidence 89999999988743
No 148
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.73 E-value=0.21 Score=50.73 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=58.4
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCC-hHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVR-SDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D-~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.+-++-|+|.|++|..+++.|.+.|++++.+-.. ++..+++... .++..- ..+.+ -+++||.++++++||..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~-----~~~~~~-~~~~~-~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF-----IGAGAI-LDLEE-ILRDADLVFIAVPDDAI 81 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC-------TT------TTG-GGCC-SEEEE-S-CCHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc-----cccccc-ccccc-ccccCCEEEEEechHHH
Confidence 3457899999999999999999999999887644 4444555432 111111 11222 24789999999999843
Q ss_pred hHHHHHHHHHh---CCCceEEEeeCCh---HHHHHHHhCCC
Q 000968 1087 NYRTVWALSKY---FPNVKTFVRAHDI---DHGLNLEKAGA 1121 (1207)
Q Consensus 1087 Ni~i~l~aR~l---~P~i~IIaRa~d~---~~~~~L~~aGA 1121 (1207)
. .++..+... .|+ ++++.+.-. +-..-+++.|+
T Consensus 82 ~-~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 82 A-EVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp H-HHHHHHHCC--S-TT--EEEES-SS--GGGGHHHHHTT-
T ss_pred H-HHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHHHCCC
Confidence 3 333333332 344 788887644 34444456665
No 149
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.71 E-value=0.3 Score=54.97 Aligned_cols=72 Identities=21% Similarity=0.114 Sum_probs=58.2
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCc-------cccCEEEEec
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA-------ERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI-------~~A~~VViat 1081 (1207)
..++|.|. |.+|+.+++.|.+.|.+|++++++++..+.+...++.++.+|.+|++.++++-- .+.|.+|-..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~A 84 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNG 84 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECC
Confidence 36788887 899999999999999999999999998887777788999999999986644311 2457776643
No 150
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.64 E-value=0.86 Score=52.71 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=71.5
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-CCCEEEecCCCHHHH-----HhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVL-----HKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-g~~vi~GDatd~evL-----~~AgI~~A~~VViatddd 1084 (1207)
+|.|+|.|-+|..++-.|.+.|.+|+++++.+++++..++. |+.+. .+... ..+ .....+..|.+++++-..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~-~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV-EQGQA-SLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe-eCCcc-eeeccCCCCcccccccCEEEEECCHH
Confidence 68999999999999999999999999999988888877654 55332 22211 110 011124689999998665
Q ss_pred chhHHHHHHHHHhCCCceEEEeeCChHHHHHHHhC-CCC
Q 000968 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKA-GAT 1122 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~a-GAd 1122 (1207)
...-.+........|+..|+.-.+--.+.+.+.+. +.+
T Consensus 82 ~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~ 120 (305)
T PRK05708 82 DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHA 120 (305)
T ss_pred hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCC
Confidence 43322222333456777777777666665555433 443
No 151
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.51 E-value=0.49 Score=54.50 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=52.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
.++.|+|.|.+|..++..|...|+ .++++|++++..+.++..|..... ..+.+ + -+.++|.||++++.+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~--~~~~~---~-~~~~aDvViiavp~~~ 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRV--TTSAA---E-AVKGADLVILCVPVGA 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCcee--cCCHH---H-HhcCCCEEEECCCHHH
Confidence 468999999999999999999885 789999999988888776642211 11211 1 2367999999998753
No 152
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=91.45 E-value=1.9 Score=42.13 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=65.8
Q ss_pred cccccCCCchHHHHHHHHHhcC--CCe-EeecCChHHHHhh-hhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL--IPF-VALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g--i~v-vVID~D~e~ve~~-r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
++.|+|+|.+|+.-...+.... ..+ -+.|.++++.+.. +..|.+ .|.| -++.|... +.|+|+++++++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~--~~~ll~~~---~~D~V~I~tp~~~- 74 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD--LEELLADE---DVDAVIIATPPSS- 74 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS--HHHHHHHT---TESEEEEESSGGG-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH--HHHHHHhh---cCCEEEEecCCcc-
Confidence 4789999999999998888763 343 4779999988765 466877 6655 22344433 7899999998864
Q ss_pred hHHHHHHHHHhCCCceEEEe---eCChHHHHHHH
Q 000968 1087 NYRTVWALSKYFPNVKTFVR---AHDIDHGLNLE 1117 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaR---a~d~~~~~~L~ 1117 (1207)
...++..+-+.+ .++++. +.+.++...+.
T Consensus 75 h~~~~~~~l~~g--~~v~~EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 75 HAEIAKKALEAG--KHVLVEKPLALTLEEAEELV 106 (120)
T ss_dssp HHHHHHHHHHTT--SEEEEESSSSSSHHHHHHHH
T ss_pred hHHHHHHHHHcC--CEEEEEcCCcCCHHHHHHHH
Confidence 334444444444 367776 45555555553
No 153
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=91.44 E-value=0.24 Score=57.77 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=54.4
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
..++|||||..|+-++..|+..|-.|+|.|.||-+.-++.=.|+.|.. +++| +..+|.+|.+|++.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~--------m~~A-a~~gDifiT~TGnk 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKTGDIFVTATGNK 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE--------hHHh-hhcCCEEEEccCCc
Confidence 368999999999999999999999999999999998777778888876 2222 35667888887764
No 154
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.36 E-value=0.49 Score=52.09 Aligned_cols=83 Identities=16% Similarity=0.004 Sum_probs=65.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCCh-HHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~-e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
..++|+|.|.+|..=++.|.+.|-.++|+-.+. +....+.. .++..+. +..+++-+. .+..|+++|+|+..|
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-----~~~lviaAt~d~~ln 86 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-----DAFLVIAATDDEELN 86 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-----CceEEEEeCCCHHHH
Confidence 368999999999999999999999999998876 44444433 3444444 555555444 399999999999999
Q ss_pred HHHHHHHHHhC
Q 000968 1088 YRTVWALSKYF 1098 (1207)
Q Consensus 1088 i~i~l~aR~l~ 1098 (1207)
-.+...+++.+
T Consensus 87 ~~i~~~a~~~~ 97 (210)
T COG1648 87 ERIAKAARERR 97 (210)
T ss_pred HHHHHHHHHhC
Confidence 99999999875
No 155
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=91.35 E-value=0.86 Score=51.99 Aligned_cols=114 Identities=18% Similarity=0.055 Sum_probs=69.6
Q ss_pred ccccccCCCchHHHHHHHHHhc--CCCeE-eecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSER--LIPFV-ALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~--gi~vv-VID~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
-++-|+|+|++|+.+++.|... +.+++ +.|+++++.+.... .|....+ .+.+-|. .++|+|+++++++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~---~~~eell----~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV---VPLDQLA----THADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc---CCHHHHh----cCCCEEEECCCcHH
Confidence 3688999999999999999863 66665 77999988765543 2422222 3344442 45799999998875
Q ss_pred hhHHHHHHHHHhCCCceEEEeeCC-----hHHHHHHHhCCCCeeecCCcHHHH
Q 000968 1086 ANYRTVWALSKYFPNVKTFVRAHD-----IDHGLNLEKAGATAVVPETLEPSL 1133 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l~P~i~IIaRa~d-----~~~~~~L~~aGAd~VI~p~~eaal 1133 (1207)
. ...+..+-+.+. ++++.... .+-.+..++.|+...+++....+.
T Consensus 80 h-~e~~~~aL~aGk--~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 80 L-RAIVEPVLAAGK--KAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred H-HHHHHHHHHcCC--cEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 4 333333334443 45544322 223334466677666665544443
No 156
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.27 E-value=0.56 Score=55.20 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=64.4
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCCh---------------------HHHH----hhhhC----CCCEEEe
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS---------------------DRVA----IGRAL----DLPVYFG 1058 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~---------------------e~ve----~~r~~----g~~vi~G 1058 (1207)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|. .+++ .+++. .+..+..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 4589999999999999999999999 899999984 1121 22211 2334555
Q ss_pred cCCCHHHHHhcCccccCEEEEecCCcchhHHHHHHHHHhC
Q 000968 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1207)
Q Consensus 1059 Datd~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR~l~ 1098 (1207)
+.+.... .+. +.++|.||.++++......+...+++.+
T Consensus 104 ~~~~~~~-~~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 104 DVTAEEL-EEL-VTGVDLIIDATDNFETRFIVNDAAQKYG 141 (339)
T ss_pred cCCHHHH-HHH-HcCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence 6554433 333 6789999999999988888887777765
No 157
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.01 E-value=0.65 Score=53.91 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=53.4
Q ss_pred ccccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHhh-hhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~~-r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.+++|+|.|.+|+.+++.|...| ..++++++++++.+.+ +..|..++ +.+.+.++ +.++|.||.+++.+..
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~~-l~~aDvVi~at~~~~~ 251 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAV-----PLDELLEL-LNEADVVISATGAPHY 251 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEE-----eHHHHHHH-HhcCCEEEECCCCCch
Confidence 46999999999999999999866 5789999999887554 44454332 22234333 5779999999998876
No 158
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.98 E-value=15 Score=49.56 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=26.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000968 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1207)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~ 316 (1207)
..+...++++...+..+.+++.++..++.++.++++++.++++..+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~ 342 (1164)
T TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556666666665555555555555554444333
No 159
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.93 E-value=19 Score=50.17 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=60.4
Q ss_pred ceeecCCCcc----ccccCCCCCccccccchhhhcccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000968 110 LAFIDGNGRN----VEFSENGDGPEANSLGEEERETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1207)
Q Consensus 110 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a 185 (1207)
=+||+.|||+ +.+. .....+.--|..-++.. -..-+++|.+-|..-..+++...-.....++..+++..-.
T Consensus 705 ~~~v~~dG~~r~G~l~G~--~~k~~a~~IG~~aR~~~---R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 705 HTWIDVDGRFRLGVLRGA--WAKPAAEYIGAAARERA---RLRRIAELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred CeeECCCCceeeeeeecc--cCCcchhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999993 3322 22444444444443211 1223677777777777777776666666666655555443
Q ss_pred HhchhH--HHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000968 186 IALKDE--AANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1207)
Q Consensus 186 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1207)
=++-++ ..-|+..+. ..-.+-..|.+.+..++-.+.-|+.+++.|...+..
T Consensus 780 ~~~Ps~~dL~~A~~~l~-------~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~ 832 (1353)
T TIGR02680 780 AGAPSDRSLRAAHRRAA-------EAERQAESAERELARAARKAAAAAAAWKQARRELER 832 (1353)
T ss_pred HhCCCchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 223333333 222222333444444444444444444444444444
No 160
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=90.86 E-value=11 Score=45.92 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 000968 176 EKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQ 246 (1207)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 246 (1207)
+.||+|++.-+ +++..-=|++| +-.+++++.-|..-+.-||.|++.|.++|.+-+.
T Consensus 215 edA~~ia~aLL---~~sE~~VN~Ls------------~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn 270 (434)
T PRK15178 215 KQAEFFAQRIL---SFAEQHVNTVS------------ARMQKERILWLENDVKSAQENLGAARLELLKIQH 270 (434)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888744 45555555555 4557788888999999999999999999988653
No 161
>PRK08507 prephenate dehydrogenase; Validated
Probab=90.85 E-value=0.46 Score=53.86 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=50.7
Q ss_pred cccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
++.|+|.|.+|..++..|.+.|. +++++|.+++..+.+.+.|..... .+. .++ .++|.||++++.+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~---~~~---~~~--~~aD~Vilavp~~~~ 71 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI---VSF---EEL--KKCDVIFLAIPVDAI 71 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc---CCH---HHH--hcCCEEEEeCcHHHH
Confidence 47789999999999999999885 678889999998888776653111 122 222 248999999988643
No 162
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.83 E-value=0.57 Score=50.23 Aligned_cols=76 Identities=16% Similarity=0.038 Sum_probs=60.7
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----CCCCEEEecCCCHHHHHhcCccccCEEEEecCC
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----~g~~vi~GDatd~evL~~AgI~~A~~VViatdd 1083 (1207)
.+++|+|. |.+|+.+++.|...+..++++++++++.+.... .+..+...|..+.+.+.++ +.++|.||.+++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~diVi~at~~ 107 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA-IKGADVVFAAGAA 107 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH-HhcCCEEEECCCC
Confidence 46899986 999999999999999999999999887765532 3567778888887766543 3688999999887
Q ss_pred cch
Q 000968 1084 PGA 1086 (1207)
Q Consensus 1084 d~~ 1086 (1207)
...
T Consensus 108 g~~ 110 (194)
T cd01078 108 GVE 110 (194)
T ss_pred Cce
Confidence 765
No 163
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=90.75 E-value=1.5 Score=49.46 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=76.0
Q ss_pred cccccCC-CchHHHHHHHHHhc-CCCeE-eecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1011 HIILCGF-GRVGQIIAQLLSER-LIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~-gi~vv-VID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.+.|+|+ |++|+.+++.+.+. +..++ ++|.++++.......++. . ..+.+-+. .++|.||..++.+ ..
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~-~---~~dl~~ll----~~~DvVid~t~p~-~~ 73 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVA-I---TDDLEAVL----ADADVLIDFTTPE-AT 73 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCcc-c---cCCHHHhc----cCCCEEEECCCHH-HH
Confidence 5789998 99999999999864 55544 488887765433112221 1 23333332 2588887666433 33
Q ss_pred HHHHHHHHHhCCCceEEEee--CChHHHHHHHh--CCCCeeecCCcHHHHHHHHHHHH
Q 000968 1088 YRTVWALSKYFPNVKTFVRA--HDIDHGLNLEK--AGATAVVPETLEPSLQLAAAVLA 1141 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa--~d~~~~~~L~~--aGAd~VI~p~~eaal~La~~iL~ 1141 (1207)
...+..+.+...+ +++-+ .+.++.+.+.+ .++..++.|++--+..+...++.
T Consensus 74 ~~~~~~al~~G~~--vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 74 LENLEFALEHGKP--LVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred HHHHHHHHHcCCC--EEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHH
Confidence 5566666666543 44433 25666666654 67888899999888777777775
No 164
>COG2985 Predicted permease [General function prediction only]
Probab=90.73 E-value=4.1 Score=49.60 Aligned_cols=106 Identities=21% Similarity=0.366 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHH---hchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000968 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (1207)
Q Consensus 629 IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr---~~~k~il~Lg~l~vllt~vlvglll~~ 705 (1207)
..|-+++|.+++.+++.+..+ .+.+ ++|++++.+.+|++--+..+- +.+++...++++- +++...++++.+.
T Consensus 37 l~g~L~Vgl~l~~~~~~i~~~--~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k 111 (544)
T COG2985 37 LFGVLFVGLFLGQYGFTINTD--MLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHK 111 (544)
T ss_pred hhhHhHHHHHhcccccccccc--hhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHh
Confidence 446666777777666655322 2222 999999999999999877554 4455544444443 3333445555666
Q ss_pred HhCCChHH--HHHHhhccccCcHHHHHHHHHhcCCC
Q 000968 706 VSGLPGPA--SIVIGNGLALSSTAVVLQVLQERGES 739 (1207)
Q Consensus 706 llGls~~~--ALlLGailS~TStAVVl~IL~elg~l 739 (1207)
++++|... ..+-|+.-+...-+.+..+|++.+..
T Consensus 112 ~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 112 LFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred hcCCCHHHhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 67776543 33444433333334567788887763
No 165
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.68 E-value=1.1 Score=52.23 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=83.2
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecC----CCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDA----GSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDa----td~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.+.|+|.|-+|...+-.|.+.|..|+++-+++ +++.+++.|+.+...+. .....-.......+|.+|+++-.-+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~-~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR-RLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH-HHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccccH
Confidence 47899999999999999999995555555554 48888888888777666 22233334455689999999988766
Q ss_pred hHHHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCe
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATA 1123 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~ 1123 (1207)
.-.+-...+...|+..|+.-.+--.+.+.+++.+...
T Consensus 81 ~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 81 EEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred HHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 6666666666777777787788788888777665555
No 166
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.68 E-value=0.54 Score=56.56 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=51.9
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHH---------------HHhcCccccC
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREV---------------LHKVGAERAC 1075 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~ev---------------L~~AgI~~A~ 1075 (1207)
++-|+|.|.+|..++..|.+.|++|+++|.|+++++.+.....++ + ++.-.+. +.+ -+.+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~-~-e~~l~~~~~~~~~~g~l~~~~~~~~-~~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPI-Y-EPGLDELLAKALAAGRLRATTDYED-AIRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCC-C-CCCHHHHHHHhhhcCCeEEECCHHH-HHhhCC
Confidence 467899999999999999999999999999999998776432222 1 1111111 111 146789
Q ss_pred EEEEecCCcc
Q 000968 1076 AAAITLDTPG 1085 (1207)
Q Consensus 1076 ~VViatddd~ 1085 (1207)
.++++++++.
T Consensus 79 vvii~vpt~~ 88 (411)
T TIGR03026 79 VIIICVPTPL 88 (411)
T ss_pred EEEEEeCCCC
Confidence 9999998874
No 167
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.68 E-value=1 Score=51.78 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=74.6
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHH-HHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~-ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
+|-.||.|.+|.-++..|.+.|+++++.|+++++ .+.++..|..+.- ++ ..-+..||.||++..|+..-..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~----s~----~eaa~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAA----SP----AEAAAEADVVITMLPDDAAVRA 73 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccC----CH----HHHHHhCCEEEEecCCHHHHHH
Confidence 4568999999999999999999999999999999 6777776643321 22 2345788999999988865544
Q ss_pred HHH----HHHHhCCC-ceEEEeeCChH----HHHHHHhCCCCeeecCC
Q 000968 1090 TVW----ALSKYFPN-VKTFVRAHDID----HGLNLEKAGATAVVPET 1128 (1207)
Q Consensus 1090 i~l----~aR~l~P~-i~IIaRa~d~~----~~~~L~~aGAd~VI~p~ 1128 (1207)
+.. .+...-|. +.|-..+.+++ ....++..|.+++=-|-
T Consensus 74 V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPV 121 (286)
T COG2084 74 VLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPV 121 (286)
T ss_pred HHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence 443 23333344 23333444444 44455677877766553
No 168
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.68 E-value=0.49 Score=55.99 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
++.|+|.|.+|..++..|.+.|+++.+++.|++..+.....+..++.-..++ +.+ -+.+||.||++++.+. ...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVilavP~~~-~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLAVPVDA-TAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEeCCHHH-HHHH
Confidence 4789999999999999999999999999999887665554444333211122 222 2578999999998863 3344
Q ss_pred HHHHHH--hCCC
Q 000968 1091 VWALSK--YFPN 1100 (1207)
Q Consensus 1091 ~l~aR~--l~P~ 1100 (1207)
+..++. +.|+
T Consensus 77 l~~l~~~~l~~~ 88 (359)
T PRK06545 77 LAELADLELKPG 88 (359)
T ss_pred HHHHhhcCCCCC
Confidence 444443 3455
No 169
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.55 E-value=12 Score=51.24 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=7.9
Q ss_pred cccccccccccccc
Q 000968 42 RIVSKTRSTRNLSK 55 (1207)
Q Consensus 42 ~~~~~~~~~~~~~~ 55 (1207)
+.|-.++|.|+|+-
T Consensus 45 ~fVLG~~s~k~lRa 58 (1163)
T COG1196 45 RFVLGEQSAKNLRA 58 (1163)
T ss_pred HHHhCcchhhhhhc
Confidence 34555666666653
No 170
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.44 E-value=0.53 Score=54.63 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=62.5
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCE--EEecCCC-----HHHHHhcCccccCEEEEecCC
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPV--YFGDAGS-----REVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~v--i~GDatd-----~evL~~AgI~~A~~VViatdd 1083 (1207)
++.|+|.|.+|..++..|.+.|++|.+++++++.++..+..+.+. +.|.... ...+.++-.+.+|.+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 378999999999999999999999999999999888776543222 1121110 011111112478999999987
Q ss_pred cchhHHHHHHHHH--hCCCceEEEeeCCh
Q 000968 1084 PGANYRTVWALSK--YFPNVKTFVRAHDI 1110 (1207)
Q Consensus 1084 d~~Ni~i~l~aR~--l~P~i~IIaRa~d~ 1110 (1207)
.... .++..++. ..|+..++...+--
T Consensus 82 ~~~~-~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 QQLR-TICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HHHH-HHHHHHHHhcCCCCCEEEEEEcCe
Confidence 6433 23333333 34555566655544
No 171
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.44 E-value=0.57 Score=53.77 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=53.4
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCH--HHHHhcCccccCEEEEecCCcch
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSR--EVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~--evL~~AgI~~A~~VViatddd~~ 1086 (1207)
...++|+|.|.+|..+++.|+..|..+.+++.|...-...+..... ..++ .......+..||.||++++-...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~~~~~~~~~~~aD~VivavPi~~~ 77 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccccchhhhhcccCCEEEEeccHHHH
Confidence 3578999999999999999999999998888887654433332221 2222 12223456789999999988644
Q ss_pred hHHH
Q 000968 1087 NYRT 1090 (1207)
Q Consensus 1087 Ni~i 1090 (1207)
.-.+
T Consensus 78 ~~~l 81 (279)
T COG0287 78 EEVL 81 (279)
T ss_pred HHHH
Confidence 3333
No 172
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=90.39 E-value=1.6 Score=54.01 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC----CCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~----g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
++=++|.|.+|..+++.|.+.|++++|.|+++++++.+.+. |...+.+- .+++-+- ..+++++.|++++.+++.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a-~s~~e~v-~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGF-KDPEDFV-LSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccC-CCHHHHH-hcCCCCCEEEEECCCcHH
Confidence 57899999999999999999999999999999999877543 32211111 2222211 245679999999988865
Q ss_pred hHHHHHH-HHHhCCCceEEEeeCCh------HHHHHHHhCCCCee
Q 000968 1087 NYRTVWA-LSKYFPNVKTFVRAHDI------DHGLNLEKAGATAV 1124 (1207)
Q Consensus 1087 Ni~i~l~-aR~l~P~i~IIaRa~d~------~~~~~L~~aGAd~V 1124 (1207)
--.+... +..+.|. +|++-..+. +-.+.+++.|+.++
T Consensus 86 V~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 86 VDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred HHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4443322 2234454 566654442 22344454455443
No 173
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=90.34 E-value=4.4 Score=47.05 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=71.6
Q ss_pred HHHhcCCCchHHHHHHHHHhhcccccccccC--chhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHH
Q 000968 619 IFQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTA 696 (1207)
Q Consensus 619 L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~--~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~ 696 (1207)
.++|+.+-|.+++. ++|+++...++.+ +. .+.++.+++...++-||..|+.++...+++.++..+...++-.++..
T Consensus 175 ~~~~~~~nP~iia~-i~Gl~~~~~~i~l-P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P 252 (321)
T TIGR00946 175 VWKKLIKFPPLWAP-LLSVILSLVGFKM-PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQP 252 (321)
T ss_pred HHHHHHhCCChHHH-HHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHH
Confidence 34454466777764 5567776544331 21 24578999999999999999999998888776766666666655443
Q ss_pred HHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 000968 697 VVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1207)
Q Consensus 697 vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~el 736 (1207)
+++ +++..+++.+... .-...+.+...+++...++.++
T Consensus 253 ~i~-~~~~~~~~l~~~~-~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 253 AVM-AGISKLIGLRGLE-LSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHH-HHHHHHhCCChHH-HHHHHHHHcCChhhHHHHHHHH
Confidence 333 3334456776433 3334445556666666666544
No 174
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.34 E-value=0.67 Score=56.65 Aligned_cols=71 Identities=21% Similarity=0.144 Sum_probs=55.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH-----HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e-----~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.+++|+|.|..|..+++.|.+.|..|+++|.++. ..+.+++.|+.++.|+... ....+|.||++..-+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPEDTDLVVTSPGWR 89 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCCCCEEEECCCcC
Confidence 4799999999999999999999999999996542 2345667899999887554 235689998887665
Q ss_pred chh
Q 000968 1085 GAN 1087 (1207)
Q Consensus 1085 ~~N 1087 (1207)
..|
T Consensus 90 ~~~ 92 (480)
T PRK01438 90 PDA 92 (480)
T ss_pred CCC
Confidence 444
No 175
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.25 E-value=0.34 Score=49.36 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=55.0
Q ss_pred cccccccCCCchHHHHHHHHHhcCCC-eEeecCChHHHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~e~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
..+++|+|.|..|+.++..|...|.. ++++.++.++.+.+.+. +..+-.-+..+.. ..+.++|.||.+|+.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhCCeEEEecCCCC
Confidence 45799999999999999999999998 99999999998777532 2333333333322 23567899999998875
Q ss_pred h
Q 000968 1086 A 1086 (1207)
Q Consensus 1086 ~ 1086 (1207)
.
T Consensus 88 ~ 88 (135)
T PF01488_consen 88 P 88 (135)
T ss_dssp T
T ss_pred c
Confidence 4
No 176
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=90.21 E-value=0.28 Score=59.34 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=55.8
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeE------eecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCC
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFV------ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vv------VID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatdd 1083 (1207)
..|+|+|||..|+.-+..|+..|++++ +||.+++..+.+...|+.+ ++ +.++ +.+||.|+++++|
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~~------~~Ea-~~~ADvVviLlPD 107 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV--GT------YEEL-IPQADLVINLTPD 107 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc--CC------HHHH-HHhCCEEEEcCCh
Confidence 468999999999999999999999999 8888888888887788754 22 3333 7899999999999
Q ss_pred cc
Q 000968 1084 PG 1085 (1207)
Q Consensus 1084 d~ 1085 (1207)
..
T Consensus 108 t~ 109 (487)
T PRK05225 108 KQ 109 (487)
T ss_pred HH
Confidence 84
No 177
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=90.12 E-value=0.18 Score=53.17 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH-HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e-~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
..+.|+|||..|+.-+..|++.|++|++-.+... ..+.+++.|+.+. ...++ +.+||.|+++++|..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~--------~~~eA-v~~aDvV~~L~PD~~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM--------SVAEA-VKKADVVMLLLPDEV 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC--------EHHHH-HHC-SEEEE-S-HHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec--------cHHHH-HhhCCEEEEeCChHH
Confidence 3588999999999999999999999998888755 7788889998764 23333 678999999999863
No 178
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.11 E-value=0.77 Score=56.19 Aligned_cols=83 Identities=19% Similarity=0.068 Sum_probs=63.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCC--hHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVR--SDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D--~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.+++|+|.|.++..=++.|.+.|-.++||-.+ ++..+......+..+..+.... .++.++.|+++|+|++.|
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~------dl~~~~lv~~at~d~~~n 86 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDES------LLDTCWLAIAATDDDAVN 86 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCEEEEECCCCHHHh
Confidence 57999999999999999999999999999654 3332322333455555555432 346788999999999999
Q ss_pred HHHHHHHHHhC
Q 000968 1088 YRTVWALSKYF 1098 (1207)
Q Consensus 1088 i~i~l~aR~l~ 1098 (1207)
..+...+++.+
T Consensus 87 ~~i~~~a~~~~ 97 (457)
T PRK10637 87 QRVSEAAEARR 97 (457)
T ss_pred HHHHHHHHHcC
Confidence 99999998764
No 179
>PRK06182 short chain dehydrogenase; Validated
Probab=90.08 E-value=0.55 Score=52.50 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=59.2
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcC------ccccCEEEEecC
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITLD 1082 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~Ag------I~~A~~VViatd 1082 (1207)
..++|.|. |.+|+.+++.|.+.|..+++++++++..+.....+..++.+|.+|++.++++- ..+.|.+|....
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 35777774 88999999999999999999999998887666678899999999999876542 135788876654
No 180
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.05 E-value=28 Score=44.67 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=45.6
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000968 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1207)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~ 315 (1207)
++..+-.+.+..++.++.+|++.+.+++.++.+++.+++++++++.++.+.-++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667888889999999999999999999999999999999998876665543
No 181
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.94 E-value=54 Score=44.47 Aligned_cols=8 Identities=50% Similarity=0.771 Sum_probs=5.4
Q ss_pred CCCeEeec
Q 000968 1032 LIPFVALD 1039 (1207)
Q Consensus 1032 gi~vvVID 1039 (1207)
..|++++|
T Consensus 1096 ~~~~~~lD 1103 (1164)
T TIGR02169 1096 PSPFYAFD 1103 (1164)
T ss_pred CCCcEEec
Confidence 45777776
No 182
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.79 E-value=13 Score=50.76 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=40.8
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000968 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1207)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~ 328 (1207)
+....+++++..++.++.+|+.+++.++.+.+++++++..++..-.+.+......++....
T Consensus 835 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~ 895 (1163)
T COG1196 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667777777777777777777777777777777777766666555555444433
No 183
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=89.78 E-value=1.1 Score=52.44 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=47.6
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEee-cCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVAL-DVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVI-D~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
++-|+|+|.+|..+++.|.+.|.++++. +.+++..+.+.+.|+.+ .+. .+ -+++||.|+++++++
T Consensus 5 kIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~---~e-a~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 5 TVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-----GTV---EE-AIPQADLIMNLLPDE 70 (314)
T ss_pred EEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-----CCH---HH-HHhcCCEEEEeCCcH
Confidence 5789999999999999999999887764 44455666666666642 121 11 137789999999876
No 184
>PLN00106 malate dehydrogenase
Probab=89.74 E-value=1.8 Score=50.70 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=82.0
Q ss_pred ccccccCC-CchHHHHHHHHHhcCC--CeEeecCChHHHH--hhhhCCCCEEEecC-CCHHHHHhcCccccCEEEEecCC
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVA--IGRALDLPVYFGDA-GSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve--~~r~~g~~vi~GDa-td~evL~~AgI~~A~~VViatdd 1083 (1207)
.+|.|+|. |.+|..++..|...+. .++++|.++..-+ .+..........+. .+.+ +. ..+..||.||++...
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d-~~-~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQ-LG-DALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCC-HH-HHcCCCCEEEEeCCC
Confidence 58999999 9999999999986665 7999999872111 11111122222221 2222 22 356889999999876
Q ss_pred c-----------chhH----HHHHHHHHhCCCceEEEeeCChH-----HHHHHHh-CC--CCeeecCCcHHHHHHHHHHH
Q 000968 1084 P-----------GANY----RTVWALSKYFPNVKTFVRAHDID-----HGLNLEK-AG--ATAVVPETLEPSLQLAAAVL 1140 (1207)
Q Consensus 1084 d-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~-----~~~~L~~-aG--Ad~VI~p~~eaal~La~~iL 1140 (1207)
+ ..|. .++..+++.+|+..+++-++=.+ ....+.+ .| .+.|+--...-+.++-..+-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA 176 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA 176 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHH
Confidence 4 2443 34567888999965555555433 2223333 23 37777444455556666666
Q ss_pred HHcCCCH
Q 000968 1141 AQAKLPA 1147 (1207)
Q Consensus 1141 ~~lg~~~ 1147 (1207)
..+++++
T Consensus 177 ~~lgv~~ 183 (323)
T PLN00106 177 EKKGLDP 183 (323)
T ss_pred HHhCCCh
Confidence 6555544
No 185
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.74 E-value=2.6 Score=48.15 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=61.4
Q ss_pred cccccCCCchHHHHHHHHHhcCC----CeEeecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI----PFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi----~vvVID~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
++-++|.|.+|..+++.|.+.|+ ++++.|+++++.+.+.+ .|... . ....+. +.+||.|++++.+.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~--~~~~e~-----~~~aDiIiLavkP~- 74 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-T--TNNNEV-----ANSADILILSIKPD- 74 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-e--CCcHHH-----HhhCCEEEEEeChH-
Confidence 58899999999999999998774 59999999999887764 56422 1 122222 35779999999853
Q ss_pred hhHHHHHHHHHh-CCCceEEEeeCChHHHHHHH
Q 000968 1086 ANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLE 1117 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l-~P~i~IIaRa~d~~~~~~L~ 1117 (1207)
.-..+...++.. .++ .+++-.----..+.|+
T Consensus 75 ~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~ 106 (272)
T PRK12491 75 LYSSVINQIKDQIKND-VIVVTIAAGKSIKSTE 106 (272)
T ss_pred HHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHH
Confidence 333333344432 233 3444444333333333
No 186
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.72 E-value=0.42 Score=54.35 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=55.6
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
.++|.| .|-+|+.+++.|.+.|++|++++++++........++.++.||.++++.+.++ ++.++.|+-+.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~~a 72 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFHVA 72 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEEec
Confidence 356776 59999999999999999999999987765544455788999999999888764 34567776554
No 187
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.52 E-value=1.8 Score=50.13 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=60.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhh-----------hCCCCE------EEecCCCHHHHHhcCccc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-----------ALDLPV------YFGDAGSREVLHKVGAER 1073 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r-----------~~g~~v------i~GDatd~evL~~AgI~~ 1073 (1207)
+|.|+|.|.+|..++..|...|++|+++|.+++..+..+ +.|..- ..++..--..+.+ -+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~-a~~~ 82 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD-AVAD 82 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH-hhCC
Confidence 588999999999999999999999999999998776532 223100 0000000011221 2467
Q ss_pred cCEEEEecCCcc-hhHHHHHHHHHhCCCceEEEeeCC
Q 000968 1074 ACAAAITLDTPG-ANYRTVWALSKYFPNVKTFVRAHD 1109 (1207)
Q Consensus 1074 A~~VViatddd~-~Ni~i~l~aR~l~P~i~IIaRa~d 1109 (1207)
++.|+.+++++. ....+...+++..+.-.+++....
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts 119 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS 119 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC
Confidence 999999998874 333333345555554345543333
No 188
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.10 E-value=0.92 Score=55.90 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=56.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
.+++|+|+|+.|...++.|...|.++++.|.++++.+.+++.|+.++.|+- .++.+ ..+|.||....-+..|-
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~-~~~~l-----~~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSD-AVQQI-----ADYALVVTSPGFRPTAP 85 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcc-hHhHh-----hcCCEEEECCCCCCCCH
Confidence 469999999999999999999999999999887777667777887776644 23333 45688887776665553
No 189
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.99 E-value=1.1 Score=45.61 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=55.8
Q ss_pred cccccCCCchHHHHHHHHHhcCC-CeEeecCCh--------------HH-----HH----hhhhC--C--CCEEEecCCC
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRS--------------DR-----VA----IGRAL--D--LPVYFGDAGS 1062 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~--------------e~-----ve----~~r~~--g--~~vi~GDatd 1062 (1207)
+++|+|.|.+|..+++.|...|+ .++++|.|. +. ++ .+++. + +..+..+..+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 57899999999999999999998 599999882 11 11 11111 1 2233444443
Q ss_pred HHHHHhcCccccCEEEEecCCcchhHHHHHHHHHhC
Q 000968 1063 REVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1207)
Q Consensus 1063 ~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR~l~ 1098 (1207)
... ..-+.+++.||.++++......+...+++.+
T Consensus 81 ~~~--~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~ 114 (143)
T cd01483 81 DNL--DDFLDGVDLVIDAIDNIAVRRALNRACKELG 114 (143)
T ss_pred hhH--HHHhcCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 322 2234678888888888666566666666654
No 190
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.98 E-value=1.5 Score=51.04 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=59.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEE--ec-----CCCHHHHHhcCccccCEEEEecCC
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--GD-----AGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~--GD-----atd~evL~~AgI~~A~~VViatdd 1083 (1207)
++.|+|.|.+|..++..|.+.|++|++++++++..+.+...+..-.+ |. ..-...+.++ ++.+|.|++++++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~aD~Vi~~v~~ 84 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAGADFAVVAVPS 84 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcCCCEEEEECch
Confidence 58899999999999999999999999999999988777643211111 10 0000112221 3678999999988
Q ss_pred cchhHHHHHHHHHhCCCceEEEeeC
Q 000968 1084 PGANYRTVWALSKYFPNVKTFVRAH 1108 (1207)
Q Consensus 1084 d~~Ni~i~l~aR~l~P~i~IIaRa~ 1108 (1207)
... ..+ ++...|...++..+.
T Consensus 85 ~~~-~~v---~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 85 KAL-RET---LAGLPRALGYVSCAK 105 (328)
T ss_pred HHH-HHH---HHhcCcCCEEEEEee
Confidence 742 222 244445544443333
No 191
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.90 E-value=1.7 Score=48.85 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=49.9
Q ss_pred cccccCCCchHHHHHHHHHhcC---CCeEeecCChHHHHhhhhC-CCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL---IPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g---i~vvVID~D~e~ve~~r~~-g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
++.|+|+|.+|..+++.|.+.+ ..+.++|++++..+.+... |+.+. .+..+. +.++|.|++++.++
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~---~~~~~~-----~~~advVil~v~~~ 73 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA---TDNQEA-----AQEADVVVLAVKPQ 73 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec---CChHHH-----HhcCCEEEEEcCHH
Confidence 4789999999999999999888 6799999999988877654 54321 111222 35789999998765
No 192
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.84 E-value=1.5 Score=47.79 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=59.5
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCCh-------------------HHHHh----hhhC--CCC--EEEecC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS-------------------DRVAI----GRAL--DLP--VYFGDA 1060 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~-------------------e~ve~----~r~~--g~~--vi~GDa 1060 (1207)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|. .+++. +++. ++. .+....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i 100 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV 100 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC
Confidence 4589999999999999999999998 799999982 22221 1211 222 222333
Q ss_pred CCHHHHHhcCccccCEEEEecCCcchhHHHHHHHHHhC
Q 000968 1061 GSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1207)
Q Consensus 1061 td~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR~l~ 1098 (1207)
. ++.+.+ -+.++|.||.++++...-..+...+++.+
T Consensus 101 ~-~~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 101 T-AENLEL-LINNVDLVLDCTDNFATRYLINDACVALG 136 (202)
T ss_pred C-HHHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2 233322 35789999999988776666767777765
No 193
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.78 E-value=2.9 Score=48.46 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=65.1
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEE--ecCCC--HHHHHh-cCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--GDAGS--REVLHK-VGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~--GDatd--~evL~~-AgI~~A~~VViatddd~ 1085 (1207)
+|.|+|.|.+|..++..|.+.|.+|+++.+++. +..+..|..+.. |+..- ...... .....+|.|++++....
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 689999999999999999999999999999863 445555544321 21100 000000 12457899999987664
Q ss_pred hhHHHHHHHHH-hCCCceEEEeeCChHHHHHHHh
Q 000968 1086 ANYRTVWALSK-YFPNVKTFVRAHDIDHGLNLEK 1118 (1207)
Q Consensus 1086 ~Ni~i~l~aR~-l~P~i~IIaRa~d~~~~~~L~~ 1118 (1207)
. ..++..++. ..|+..++.-.+--.+.+.+.+
T Consensus 85 ~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~ 117 (313)
T PRK06249 85 N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE 117 (313)
T ss_pred h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 3 223333333 4466666666665555555543
No 194
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.77 E-value=2.2 Score=46.57 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=30.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVR 1041 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D 1041 (1207)
+.+|.|+|.|.+|..++..|...|+ .++++|.|
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999999 59999999
No 195
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.76 E-value=2.3 Score=49.44 Aligned_cols=131 Identities=19% Similarity=0.178 Sum_probs=76.5
Q ss_pred cccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHH-hhh---hC----CC-CEEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA-IGR---AL----DL-PVYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve-~~r---~~----g~-~vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
++.|+|.|.+|..++..|...|. +++++|.+++..+ ... .. .. .-+... +| ++. +.+||.+|++
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t-~d---~~~--~~~aDiVIit 76 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGT-NN---YAD--TANSDIVVIT 76 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEec-CC---HHH--hCCCCEEEEc
Confidence 57899999999999999998776 8999999766433 111 00 11 112211 11 222 5789999999
Q ss_pred cCCcc-----------hhHHHH----HHHHHhCCCceEEEeeCChHHH---HHHHhCC--CCeeecC-CcHHHHHHHHHH
Q 000968 1081 LDTPG-----------ANYRTV----WALSKYFPNVKTFVRAHDIDHG---LNLEKAG--ATAVVPE-TLEPSLQLAAAV 1139 (1207)
Q Consensus 1081 tddd~-----------~Ni~i~----l~aR~l~P~i~IIaRa~d~~~~---~~L~~aG--Ad~VI~p-~~eaal~La~~i 1139 (1207)
.+.+. .|..++ ..+++.+|+..+|+-++ |.++ ...+..| ...||-- +..-+.++-..+
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN-P~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~l 155 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN-PLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFI 155 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC-cHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHH
Confidence 98431 465544 44677788865555554 3322 2223433 3457733 233334555555
Q ss_pred HHHcCCCHH
Q 000968 1140 LAQAKLPAS 1148 (1207)
Q Consensus 1140 L~~lg~~~~ 1148 (1207)
-..+++++.
T Consensus 156 a~~l~v~~~ 164 (305)
T TIGR01763 156 AMELGVSVQ 164 (305)
T ss_pred HHHhCcCHH
Confidence 555544443
No 196
>COG2431 Predicted membrane protein [Function unknown]
Probab=88.72 E-value=1.9 Score=48.99 Aligned_cols=90 Identities=24% Similarity=0.426 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccC---hh--HHHhchhhHHHHHHHHHHHHHHHHHHH
Q 000968 628 PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELS---VE--RLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1207)
Q Consensus 628 ~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEld---l~--~Lr~~~k~il~Lg~l~vllt~vlvgll 702 (1207)
.+.++.+.|+++|-..-... +..+...+..+.+++|.+|.++. .. +..=+ |+.+.+++.. +++.++.|.+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~---~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i~-ilssliGG~i 182 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL---NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFIT-LLSSLIGGLI 182 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc---cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHHH-HHHHHHHHHH
Confidence 46678888888886433322 23677889999999999999887 22 22212 4455555543 3445567777
Q ss_pred HHHHhCCChHHHHHHhhccc
Q 000968 703 AHFVSGLPGPASIVIGNGLA 722 (1207)
Q Consensus 703 l~~llGls~~~ALlLGailS 722 (1207)
..+++++|+.+++.+++.+.
T Consensus 183 aa~~l~lpl~~~lAmasG~G 202 (297)
T COG2431 183 AAFLLDLPLTTGLAMASGFG 202 (297)
T ss_pred HHHHHhccHHHHHHHHhccc
Confidence 78888999988888776543
No 197
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.62 E-value=1.6 Score=52.30 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=54.3
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHH-------hh-hhCCCCEEEecCCCHHHHHhcCcc---ccCEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVA-------IG-RALDLPVYFGDAGSREVLHKVGAE---RACAAA 1078 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve-------~~-r~~g~~vi~GDatd~evL~~AgI~---~A~~VV 1078 (1207)
.++|.|. |.+|+.+++.|.+.|++|+++++++...+ .. ...++.++.||.+|++.+.++--. .+|.||
T Consensus 62 kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi 141 (390)
T PLN02657 62 TVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVVV 141 (390)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEEE
Confidence 4667764 99999999999999999999999875432 11 124788999999999998776322 578888
Q ss_pred Eec
Q 000968 1079 ITL 1081 (1207)
Q Consensus 1079 iat 1081 (1207)
.+.
T Consensus 142 ~~a 144 (390)
T PLN02657 142 SCL 144 (390)
T ss_pred ECC
Confidence 654
No 198
>PRK06953 short chain dehydrogenase; Provisional
Probab=88.57 E-value=1.2 Score=48.05 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=57.6
Q ss_pred ccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhc--Cc--cccCEEEEecC
Q 000968 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV--GA--ERACAAAITLD 1082 (1207)
Q Consensus 1012 VIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~A--gI--~~A~~VViatd 1082 (1207)
++|.| .|.+|+.+++.|.+.|..+++++++++..+.++..+..++.+|.++++.++++ .+ .+.+.+|.+..
T Consensus 4 vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred EEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence 55665 68899999999999999999999999888777777778899999999988774 12 34677776543
No 199
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=88.53 E-value=62 Score=38.67 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH-H--HhCCChHHHHHHhhccccCcHH
Q 000968 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH-F--VSGLPGPASIVIGNGLALSSTA 727 (1207)
Q Consensus 662 v~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~-~--llGls~~~ALlLGailS~TStA 727 (1207)
.++.+-+|--+|+.-+..+.+..+..+..|+-+-...++.... + ..|++..+|..+|.+-..=.|.
T Consensus 138 ~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15477 138 LVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 3455567888999999999988777777776542222222111 1 1378888888888766544443
No 200
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=88.49 E-value=15 Score=44.08 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=77.3
Q ss_pred CCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHH
Q 000968 625 GGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGL 701 (1207)
Q Consensus 625 ~lP~IVGyLLaGILLGP~g--LglI~-~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvgl 701 (1207)
.+|..++-+++|+++.... ++... +....+.++++.+-+++..+=+.+++..+....-+.+.+-++|++++.+...+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999997532 12211 44567899999999999999999999999999988888888888887766556
Q ss_pred HHHHHhCCChHHHHH----HhhccccCcHHH
Q 000968 702 VAHFVSGLPGPASIV----IGNGLALSSTAV 728 (1207)
Q Consensus 702 ll~~llGls~~~ALl----LGailS~TStAV 728 (1207)
+.+.++|-+|..+.+ .|..+.+|.+++
T Consensus 326 v~fr~~gkdydaavm~~G~~G~glGatp~a~ 356 (368)
T PF03616_consen 326 VTFRVMGKDYDAAVMSAGFCGFGLGATPNAM 356 (368)
T ss_pred HhhhhhCCChhHHHHhhhhhccCCCccHHHH
Confidence 666678888866553 334444454443
No 201
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.47 E-value=0.66 Score=49.39 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=57.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc--h
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG--A 1086 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~--~ 1086 (1207)
...+-|+|+|++|+.+++.|+..|.+|++.|+.+.........++. + .+-.+.| .++|.|++..+-.. .
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~--~--~~l~ell-----~~aDiv~~~~plt~~T~ 106 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE--Y--VSLDELL-----AQADIVSLHLPLTPETR 106 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE--E--SSHHHHH-----HH-SEEEE-SSSSTTTT
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce--e--eehhhhc-----chhhhhhhhhccccccc
Confidence 3568899999999999999999999999999998876533333321 1 1222333 45889999887543 3
Q ss_pred hHHHHHHHHHhCCCceEEEeeC
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAH 1108 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~ 1108 (1207)
++.-......+-|+..+|-.++
T Consensus 107 ~li~~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp TSBSHHHHHTSTTTEEEEESSS
T ss_pred eeeeeeeeeccccceEEEeccc
Confidence 3334445556666655544333
No 202
>PRK09291 short chain dehydrogenase; Provisional
Probab=88.22 E-value=1.1 Score=49.10 Aligned_cols=72 Identities=18% Similarity=0.025 Sum_probs=56.7
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhcCccccCEEEEecC
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~AgI~~A~~VViatd 1082 (1207)
+++|.|. |.+|+.+++.|.+.|.+++++.++++..+.+++ .++.++.+|.++++.++++--.+.+.+|-...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAG 82 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECCC
Confidence 5777775 789999999999999999999998776544321 24678899999999998874447888877543
No 203
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.13 E-value=2.5 Score=50.77 Aligned_cols=70 Identities=26% Similarity=0.244 Sum_probs=48.8
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHH------------hcCccccCEEEE
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH------------KVGAERACAAAI 1079 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~------------~AgI~~A~~VVi 1079 (1207)
|-|+|.|.+|..++..+. .|++|+++|.|+++++.+++.-.++ +....+ +.+. ..-+.+|+.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~-~e~~l~-~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI-VDKEIQ-QFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC-CCcCHH-HHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 678999999999997776 5999999999999999886532222 111111 1110 111478999999
Q ss_pred ecCCc
Q 000968 1080 TLDTP 1084 (1207)
Q Consensus 1080 atddd 1084 (1207)
+++++
T Consensus 80 ~Vpt~ 84 (388)
T PRK15057 80 ATPTD 84 (388)
T ss_pred eCCCC
Confidence 99876
No 204
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=88.12 E-value=4 Score=38.51 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=67.4
Q ss_pred eEeecCChHHHHhh----hhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc-hhHHHHHHHHHhCCCceEEEeeCC
Q 000968 1035 FVALDVRSDRVAIG----RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG-ANYRTVWALSKYFPNVKTFVRAHD 1109 (1207)
Q Consensus 1035 vvVID~D~e~ve~~----r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~-~Ni~i~l~aR~l~P~i~IIaRa~d 1109 (1207)
++++|.|+...+.+ +..|+..+.--.+-.+.+....-...+.+++-...+. .-...+..+|+.+|++++|+-+.+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 46777777765544 3456534444444556677777777899888875554 446788888999999999988854
Q ss_pred --hHHHHHHHhCCCCeeecCCc
Q 000968 1110 --IDHGLNLEKAGATAVVPETL 1129 (1207)
Q Consensus 1110 --~~~~~~L~~aGAd~VI~p~~ 1129 (1207)
........++|++..+...+
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESSS
T ss_pred CCHHHHHHHHHCCCCEEEECCC
Confidence 56888889999998885544
No 205
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.04 E-value=3.7 Score=47.25 Aligned_cols=116 Identities=25% Similarity=0.242 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhhcccchhHHHHHHHHh-HHhHHHHHHHHHHcCccChhhhccchhhHHHHHH
Q 000968 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALG 906 (1207)
Q Consensus 828 ~Lal~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~~~l~e~l~~-~~~~flplFFv~IGm~Idl~~L~~~~~~illlll 906 (1207)
-+.++|....++..+.+||.+|-.+||++.+.....-.-.+.+.+ ..++=..+....+|+.+.+..+...-.+.+-..+
T Consensus 14 gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl 93 (408)
T COG4651 14 GLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGAL 93 (408)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHH
Confidence 355667777899999999999999999999854322112222322 2344444555578999988877652111100111
Q ss_pred HHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcch
Q 000968 907 LLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEF 943 (1207)
Q Consensus 907 llll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~ 943 (1207)
.-+..-....+...+..|+++...+..|+.++..+.+
T Consensus 94 ~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV 130 (408)
T COG4651 94 AQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV 130 (408)
T ss_pred HHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH
Confidence 1111122234455667788888888888877655543
No 206
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.04 E-value=2.5 Score=51.55 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=57.6
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHh-hhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAI-GRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~-~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
++.|+| .|.+|..+++.|...|.+++++|++++..+. ....|.. + ..+.+ ..+.++|.||++++.+...-
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~-~---~~~~~----e~~~~aDvVIlavp~~~~~~ 73 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVE-Y---ANDNI----DAAKDADIVIISVPINVTED 73 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCe-e---ccCHH----HHhccCCEEEEecCHHHHHH
Confidence 367887 8999999999999999999999999887643 3444542 1 11221 12467899999998764432
Q ss_pred HHHHHHHHhCCCceEEEeeCC
Q 000968 1089 RTVWALSKYFPNVKTFVRAHD 1109 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~d 1109 (1207)
.+...+....|+. +++-+.+
T Consensus 74 vl~~l~~~l~~~~-iViDvsS 93 (437)
T PRK08655 74 VIKEVAPHVKEGS-LLMDVTS 93 (437)
T ss_pred HHHHHHhhCCCCC-EEEEccc
Confidence 2222223334443 4444443
No 207
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=88.01 E-value=15 Score=43.00 Aligned_cols=197 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhhhhhhccchhhhcccccccCccccccccccccCchhhHHHHhcchHHHHHhhhcCc
Q 000968 513 IFQGLMEYARKQLPKLVLGFLLFGAGVAFYANQAERSSLQLQQPDVITTSIEEASSNAKPLIREVKKLPKRIKKLLDMLP 592 (1207)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~c~~~~~~~~~~~~~~~ 592 (1207)
.+-.+|| .|.+|+|++| +-+.++....++-.+.+++...+.. ...+.++++|+.--+..-+-
T Consensus 121 a~~alME-----~PAIival~L-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~E~l~~~sv~L------- 182 (327)
T PF05982_consen 121 ALLALME-----SPAIIVALLL-----ARLFSRKQAAGATASSTRVGAGSGH-EGISWGELLHESLTNKSVVL------- 182 (327)
T ss_pred HHHHHHh-----hhHHHHHHHH-----HHHHhccccccccCCcccccccccc-ccccHHHHHHHHHcCchHHH-------
Q ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcc
Q 000968 593 EQEINEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLEL 672 (1207)
Q Consensus 593 s~gm~~~~~~Ll~l~lLLl~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEl 672 (1207)
++|-++.|.+.||.+..-+.+ ....+-.=.+.++|...|+.
T Consensus 183 ------------------------------------LlGgliIG~~~g~~g~~~i~p--f~~~lF~G~L~lFLLeMGl~- 223 (327)
T PF05982_consen 183 ------------------------------------LLGGLIIGFLAGPEGVESIKP--FFVDLFKGVLCLFLLEMGLV- 223 (327)
T ss_pred ------------------------------------HHHHHHHhheeCccchhhccc--hhhccHHHHHHHHHHHhhHH-
Q ss_pred ChhHHHhchhhHHHHHHHHHHHHHH--HHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCChhhHHHHHH
Q 000968 673 SVERLSSMKKYVFGLGSAQVLVTAV--VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSV 750 (1207)
Q Consensus 673 dl~~Lr~~~k~il~Lg~l~vllt~v--lvglll~~llGls~~~ALlLGailS~TStAVVl~IL~elg~l~s~~Grl~Lsv 750 (1207)
--++++..++..+.+...+++.+.+ .+++.+.+++|++...+++++.+.+..|=-.+=+.++--=.-..+---+..+.
T Consensus 224 A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SL 303 (327)
T PF05982_consen 224 AARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASL 303 (327)
T ss_pred HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHH
Q ss_pred Hh---hhhHHHHHHHHHHH
Q 000968 751 LL---FQDLAVVVLLILIP 766 (1207)
Q Consensus 751 sl---~nDi~aIvll~li~ 766 (1207)
++ ||=+++++++.-+.
T Consensus 304 giTFPfNi~iGIPLY~~la 322 (327)
T PF05982_consen 304 GITFPFNILIGIPLYYALA 322 (327)
T ss_pred hcccchhHhhccHHHHHHH
No 208
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=87.98 E-value=67 Score=38.41 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH-H--HhCCChHHHHHHhhccccCcHH
Q 000968 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH-F--VSGLPGPASIVIGNGLALSSTA 727 (1207)
Q Consensus 662 v~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~-~--llGls~~~ALlLGailS~TStA 727 (1207)
.++.+-+|--+|+.-+..+.+..+..+..|+-+-...++.... + ..|++..+|..+|.+-..=.|.
T Consensus 138 ~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 138 LVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 3455567888999999999988777777776542222222111 1 1378888888888766544443
No 209
>PLN02256 arogenate dehydrogenase
Probab=87.88 E-value=1.5 Score=50.87 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=57.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.++.|+|+|.+|..+++.|.+.|.+++++|.++.. +.....|+.. .++.+-+. ...+|.|+++++.+. ...
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDvVilavp~~~-~~~ 107 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDVVLLCTSILS-TEA 107 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCEEEEecCHHH-HHH
Confidence 36889999999999999999999999999998743 4445556532 22332221 146899999998753 333
Q ss_pred HHHHH--HHhCCCceEEEeeCC
Q 000968 1090 TVWAL--SKYFPNVKTFVRAHD 1109 (1207)
Q Consensus 1090 i~l~a--R~l~P~i~IIaRa~d 1109 (1207)
++... ....|+ .+++-+-.
T Consensus 108 vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 108 VLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred HHHhhhhhccCCC-CEEEecCC
Confidence 33322 123455 34554444
No 210
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=87.87 E-value=34 Score=38.90 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHH-------HhhhHhHHHHHHHHhHH------------
Q 000968 153 LRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAW-------NNVNVTLDMVHEIVNEE------------ 213 (1207)
Q Consensus 153 l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~e------------ 213 (1207)
-+..++...++++.-.---.-+.+|++++++.+-.+++.+..-+ .+|......|++++++=
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 122 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPS 122 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 33334444333333333334455555555555555555444444 44555556666655432
Q ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhccCCCCCCCCc
Q 000968 214 CIAKEAVHKATMAL------------SLAEARLQVAIESLQDVKQEDDYPEGST 255 (1207)
Q Consensus 214 ~~a~~~~~~~~~~~------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1207)
..-.++...|.++| ..|+..+.-|.+-|...+....+|...+
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~ 176 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQEN 176 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 11122333344333 3466666666666666555555555443
No 211
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.85 E-value=4 Score=47.49 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000968 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSG 708 (1207)
Q Consensus 629 IVGyLLaGILLGP~gLglI~~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llG 708 (1207)
.+--++.|+++|+.-.++ .+..+.=..+++++..|..|..+|+..+.+.+...+.++++.++++.++..++ ..++|
T Consensus 169 lilpILiGmilGNld~~~---~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i-~rllg 244 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDM---RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA-DRLVG 244 (312)
T ss_pred HHHHHHHHHHHhccchhh---HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHhC
Confidence 344456777777631111 11111112237888899999999999999999999988888877776544444 34568
Q ss_pred CChHHHHHHh--hccccCcHHH
Q 000968 709 LPGPASIVIG--NGLALSSTAV 728 (1207)
Q Consensus 709 ls~~~ALlLG--ailS~TStAV 728 (1207)
.+...++++| +.-+..-++.
T Consensus 245 ~~~~~g~li~stAGnAIcgpAA 266 (312)
T PRK12460 245 GTGIAGAAASSTAGNAVATPLA 266 (312)
T ss_pred CChhHHHHHHHHhhHHHHHHHH
Confidence 8888888888 4434333333
No 212
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.74 E-value=26 Score=39.24 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1207)
|+....=|..+.+.++...--...+|.+.+...+..-.|.++...|....+.+-....++..+=.+...-...|--.+..
T Consensus 59 L~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 59 LEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666666666666666667777777777777777777766666666555444444444333333333334444444
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 000968 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1207)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~ 309 (1207)
+|.+...-.+-+..+......++.+.+ +-.+-...-.+.|+..+..|.+-|.+......+...||+++++|.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~--------~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEE--------KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333333222222221110 001112333445555666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhhHHH
Q 000968 310 EVAEKAQMNALKAEED 325 (1207)
Q Consensus 310 ~~~~~~~~~a~~a~~~ 325 (1207)
+-..+.+..-.+...+
T Consensus 211 ~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555444444333
No 213
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.69 E-value=2.9 Score=47.86 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=62.4
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc--c
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP--G 1085 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd--~ 1085 (1207)
..||+|+|.|-+|..+++.|...|+ .++++|.|.-....+.. .+..+.++- .
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnR-------------------------Q~~~~~~~vG~~ 84 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNR-------------------------QIHALRDNVGLA 84 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccccc-------------------------ccccChhhcChH
Confidence 4589999999999999999999995 79999987544332210 011111111 1
Q ss_pred hhHHHHHHHHHhCCCceEEEeeC--ChHHHHHHHhCCCCeeecC
Q 000968 1086 ANYRTVWALSKYFPNVKTFVRAH--DIDHGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l~P~i~IIaRa~--d~~~~~~L~~aGAd~VI~p 1127 (1207)
....+...++++||++++.+... ++++...+...+.|.||.-
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIda 128 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDA 128 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEc
Confidence 22345567788999988876643 3455666655679999854
No 214
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=87.65 E-value=6.7 Score=47.67 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=55.5
Q ss_pred cccccccCCCchHHHHHHHHHhc---CCCeE-eecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSER---LIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~---gi~vv-VID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
..+++|+|.|..|+.+++.|.+. ++.++ ++|.|++.. ..-.|.+++ |+..+ ..+-+.-.+.+.|+++.+..
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~i~g~pVl-g~~~~--l~~~i~~~~id~ViIa~p~~ 199 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR--VEVAGLPVL-GKLDD--LVELVRAHRVDEVIIALPLS 199 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc--cccCCCccc-CCHHH--HHHHHHhCCCCEEEEecCcc
Confidence 35699999999999999999753 34443 467665542 223466654 44332 32333335677788887665
Q ss_pred chh--HHHHHHHHHhCCCceEEE
Q 000968 1085 GAN--YRTVWALSKYFPNVKTFV 1105 (1207)
Q Consensus 1085 ~~N--i~i~l~aR~l~P~i~IIa 1105 (1207)
... ..++..+++.+.+++++-
T Consensus 200 ~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 200 EEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred cHHHHHHHHHHHHhcCCEEEEeC
Confidence 332 345666666654444443
No 215
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=1.1 Score=47.69 Aligned_cols=51 Identities=35% Similarity=0.446 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000968 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEE 324 (1207)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~ 324 (1207)
+.|+-+.++.+..-...|+.+|.+++++-|+-|+.||+++.+|+.+.|-+|
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk~ 192 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Confidence 345566667777777889999999999999999999999999999887653
No 216
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.49 E-value=1.2 Score=46.56 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=49.1
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCC------------CEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDL------------PVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~------------~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
+.|+|.|.+|..++..|...|++|.+..+|++.++.++..+. ++.. -+|.+ .-+++||.+++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~--t~dl~----~a~~~ad~Iii 75 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA--TTDLE----EALEDADIIII 75 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE--ESSHH----HHHTT-SEEEE
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc--ccCHH----HHhCcccEEEe
Confidence 679999999999999999999999999999998887754322 1111 12221 12367899999
Q ss_pred ecCCcch
Q 000968 1080 TLDTPGA 1086 (1207)
Q Consensus 1080 atddd~~ 1086 (1207)
+++....
T Consensus 76 avPs~~~ 82 (157)
T PF01210_consen 76 AVPSQAH 82 (157)
T ss_dssp -S-GGGH
T ss_pred cccHHHH
Confidence 9988644
No 217
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.45 E-value=11 Score=43.57 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1207)
...+..-+.+.+++++.+++.++-+|.+.+..-+--=+++..-..--.++.+ .|+.-+..|..+ .....++-.|
T Consensus 98 ~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~---~~~~~~~~e~~~---~~~~dL~~~L 171 (312)
T PF00038_consen 98 RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE---QIQSSVTVEVDQ---FRSSDLSAAL 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---T-------------------HHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccccccceeecc---cccccchhhh
Confidence 3445556777788888888888888888887776555554433321111111 111111111111 1122233333
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 000968 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1207)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~ 309 (1207)
.+.|-|-...+-....+....++.-. .+-..-......++..+++|+++++..+.....+|..++.++..|.+.+..+.
T Consensus 172 ~eiR~~ye~~~~~~~~e~e~~y~~k~-~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 172 REIRAQYEEIAQKNREELEEWYQSKL-EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhccccc-ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33333322111111000000000000 00000112245788899999999999999999999999999999999998775
Q ss_pred H
Q 000968 310 E 310 (1207)
Q Consensus 310 ~ 310 (1207)
.
T Consensus 251 ~ 251 (312)
T PF00038_consen 251 Q 251 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 218
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=87.44 E-value=2 Score=50.30 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=50.1
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
..+-|+|||.+|+.+++.|+..|.+|++.++.....+.+...|..+. +.+ + -+.+||.|++.++++..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-----sl~---E-aak~ADVV~llLPd~~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-----SVS---E-AVRTAQVVQMLLPDEQQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-----CHH---H-HHhcCCEEEEeCCChHH
Confidence 35889999999999999999999999999765444455555565432 222 1 23678999999998644
No 219
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.42 E-value=84 Score=44.03 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=21.7
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 000968 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1207)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~ 306 (1207)
+...++++.+++..+..-+.++.+...++.++.+++.
T Consensus 349 a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 349 AADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666666666666555543
No 220
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.42 E-value=1.5 Score=53.61 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=60.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH-----HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e-----~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.++.|+|+|..|+.+++.|.+.|+.|++.|.++. ..+.++..|+.++.|+.. ++.+ .++|.||.+..-+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~~dlVV~Spgi~ 88 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DGFDVIFKTPSMR 88 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----ccCCEEEECCCCC
Confidence 4799999999999999999999999999997752 234567779888888654 3333 5578877765444
Q ss_pred chhHHHHHHHHHhCCCceEE
Q 000968 1085 GANYRTVWALSKYFPNVKTF 1104 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~l~P~i~II 1104 (1207)
..| .....+|+.+ ++|+
T Consensus 89 ~~~-p~~~~a~~~~--i~i~ 105 (458)
T PRK01710 89 IDS-PELVKAKEEG--AYIT 105 (458)
T ss_pred CCc-hHHHHHHHcC--CcEE
Confidence 443 3445555543 4444
No 221
>PRK07680 late competence protein ComER; Validated
Probab=87.39 E-value=3 Score=47.31 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=60.9
Q ss_pred ccccCCCchHHHHHHHHHhcCC----CeEeecCChHHHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1012 IILCGFGRVGQIIAQLLSERLI----PFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi----~vvVID~D~e~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
+-|+|+|.+|..+++.|.+.|. ++.+.++++++.+.+... |+.+. .+..+. +.++|.|++++.+..
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDiVilav~p~~ 74 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA---KTIEEV-----ISQSDLIFICVKPLD 74 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE---CCHHHH-----HHhCCEEEEecCHHH
Confidence 6799999999999999998883 689999999888776543 33221 222222 246899999986442
Q ss_pred hhHHHHHHHHHh-CCCceEEEeeCChHHHHHHHh
Q 000968 1086 ANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEK 1118 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l-~P~i~IIaRa~d~~~~~~L~~ 1118 (1207)
...++..++.. .++ ++|+.....-..+.|.+
T Consensus 75 -~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 75 -IYPLLQKLAPHLTDE-HCLVSITSPISVEQLET 106 (273)
T ss_pred -HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence 33333334433 233 35555554334444543
No 222
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.29 E-value=1 Score=48.82 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=54.3
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----CCCCEEEecCCCHHHHHhcC------ccccCEE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----~g~~vi~GDatd~evL~~Ag------I~~A~~V 1077 (1207)
..++|.| .|.+|+.+++.|.+.|.++++++++++..+...+ .++.++.+|.++++.++++= ....+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 86 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVL 86 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4577777 4899999999999999999999999876544422 45678899999998765421 1367787
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|...
T Consensus 87 i~~a 90 (237)
T PRK07326 87 IANA 90 (237)
T ss_pred EECC
Confidence 7654
No 223
>PLN02712 arogenate dehydrogenase
Probab=87.24 E-value=3.3 Score=53.20 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=65.5
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
..++.|+|+|.+|+.+++.|.+.|..++++|++.+. +.+.+.|... + .+.+-+.. ..+|.|+++++.. ...
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~-~---~~~~el~~---~~aDvVILavP~~-~~~ 439 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSY-F---SDADDLCE---EHPEVILLCTSIL-STE 439 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeE-e---CCHHHHHh---cCCCEEEECCChH-HHH
Confidence 346999999999999999999999999999998654 4455566431 1 23322211 3589999999864 333
Q ss_pred HHHHHHHH--hCCCceEEEeeCCh--HHHHHHH---hCCCCee
Q 000968 1089 RTVWALSK--YFPNVKTFVRAHDI--DHGLNLE---KAGATAV 1124 (1207)
Q Consensus 1089 ~i~l~aR~--l~P~i~IIaRa~d~--~~~~~L~---~aGAd~V 1124 (1207)
.++..+.. +.|+ .+++-+-.. ...+.+. ..|.+.|
T Consensus 440 ~vi~~l~~~~lk~g-~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 440 KVLKSLPFQRLKRS-TLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred HHHHHHHHhcCCCC-cEEEECCCccHHHHHHHHHhccCCCceE
Confidence 44333332 2344 455555333 2333333 3356555
No 224
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=87.22 E-value=74 Score=38.07 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH-H--HhCCChHHHHHHhhccccCcHH
Q 000968 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH-F--VSGLPGPASIVIGNGLALSSTA 727 (1207)
Q Consensus 662 v~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~-~--llGls~~~ALlLGailS~TStA 727 (1207)
.++.+-+|--+|+.-+..+.+..+..+..|+-+-...++.... + ..|++..+|..+|.+-..=.|.
T Consensus 138 ~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 138 LVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 3455567888999999999988777777776542222222111 1 1378888888888766544443
No 225
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.19 E-value=1.3 Score=51.28 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=79.5
Q ss_pred cccccCCCchHHHHHHHHHhcC--CCeEeecCChHHHHh-h---hhCC----CCEEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAI-G---RALD----LPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve~-~---r~~g----~~vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
++.|+|.|.+|..++..|...| ..++++|.++++.+. . .... ...+++ .+.+ .+.+||.+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d~~-----~l~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GDYA-----DCKGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CCHH-----HhCCCCEEEEc
Confidence 3789999999999999999988 479999999887652 2 1110 011221 2222 36899999999
Q ss_pred cCCcc-----------hhH----HHHHHHHHhCCCceEEEeeCChHH-HHHHH-hCC--CCeeecC-CcHHHHHHHHHHH
Q 000968 1081 LDTPG-----------ANY----RTVWALSKYFPNVKTFVRAHDIDH-GLNLE-KAG--ATAVVPE-TLEPSLQLAAAVL 1140 (1207)
Q Consensus 1081 tddd~-----------~Ni----~i~l~aR~l~P~i~IIaRa~d~~~-~~~L~-~aG--Ad~VI~p-~~eaal~La~~iL 1140 (1207)
.+.+. .|. .++..+++.+|+..+++..+-.+- ...+. ..| -..|+-- +..=+.++-..+-
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la 154 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLG 154 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHH
Confidence 87641 243 344566778888777766543332 22222 223 3345522 3333445555555
Q ss_pred HHcCCCHHHH
Q 000968 1141 AQAKLPASEI 1150 (1207)
Q Consensus 1141 ~~lg~~~~ei 1150 (1207)
+.+++++.++
T Consensus 155 ~~~~v~~~~v 164 (308)
T cd05292 155 EHLGVDPRSV 164 (308)
T ss_pred HHhCCCccce
Confidence 5666655443
No 226
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.05 E-value=1.8 Score=53.23 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=53.3
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHh-hhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI-GRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~-~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
..++.|+|.|..|+.+++.|.+.|..+++.|.++..... +...|++++.|.-. ++ ++..++.||....-+..|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~-----~~~~~d~vV~Spgi~~~~ 88 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEA-SD-----QLDSFSLVVTSPGWRPDS 88 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hh-----HhcCCCEEEeCCCCCCCC
Confidence 346999999999999999999999999999987665443 34568888876332 22 235677877765554444
No 227
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.98 E-value=2.8 Score=48.26 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=50.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-----CCCE-------EEecCCCHHHHHhcCccccCEEE
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPV-------YFGDAGSREVLHKVGAERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-----g~~v-------i~GDatd~evL~~AgI~~A~~VV 1078 (1207)
+|.|+|.|.+|..++..|...|++|+++|.+++..+.+++. +... ..+..+-...+.+ .+.++|.|+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~aDlVi 84 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAA-AVSGADLVI 84 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHH-HhccCCEEE
Confidence 58899999999999999999999999999999888766431 2100 0000000001111 246789999
Q ss_pred EecCCcc
Q 000968 1079 ITLDTPG 1085 (1207)
Q Consensus 1079 iatddd~ 1085 (1207)
.+++++.
T Consensus 85 ~av~~~~ 91 (311)
T PRK06130 85 EAVPEKL 91 (311)
T ss_pred EeccCcH
Confidence 9998764
No 228
>PLN02427 UDP-apiose/xylose synthase
Probab=86.92 E-value=1 Score=53.29 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=54.3
Q ss_pred cccccC-CCchHHHHHHHHHhc-CCCeEeecCChHHHHhhhh-------CCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1011 HIILCG-FGRVGQIIAQLLSER-LIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~-gi~vvVID~D~e~ve~~r~-------~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
+|+|.| .|-+|+.+++.|.+. ++.|+++|.+++....+.. .++.++.||.+|++.+.++ +..+++||=+.
T Consensus 16 ~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~-~~~~d~ViHlA 94 (386)
T PLN02427 16 TICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL-IKMADLTINLA 94 (386)
T ss_pred EEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-hhcCCEEEEcc
Confidence 578887 599999999999998 5899999988776654432 2578999999999988765 34578776443
No 229
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.89 E-value=8.5 Score=48.00 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=57.4
Q ss_pred cccccccccCCCchHHHHHHHHHhc--CCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1007 DLQDHIILCGFGRVGQIIAQLLSER--LIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1007 ~lk~hVIIiG~GrvG~~Ia~~L~~~--gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
..+..++|+|.|.-|..+++.++.. ..|+-++|.|++... .+-.|++|+-... =+++.++-+++ .++++.++-
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g-~~i~Gv~V~g~~~-i~~~v~~~~~~---~iiiAips~ 188 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTG-MKIRGVPVLGRIE-IERVVEELGIQ---LILIAIPSA 188 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcC-CEEeceeeechhH-HHHHHHHcCCc---eEEEecCCC
Confidence 3456799999999999999999864 458889999986542 2345788887777 78888888776 667777665
Q ss_pred chh
Q 000968 1085 GAN 1087 (1207)
Q Consensus 1085 ~~N 1087 (1207)
..+
T Consensus 189 ~~~ 191 (588)
T COG1086 189 SQE 191 (588)
T ss_pred CHH
Confidence 444
No 230
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.75 E-value=2.8 Score=42.33 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=60.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
.+++|+|.|.+|..+++.|...|+ .++++|.|.=..+.+.. ++++.. ...|- ....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r---~~~~~~-------~~vG~-------------~Ka~ 59 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNR---QFLYTE-------EDVGK-------------NKAE 59 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCT---CTTS-G-------GGTTS-------------BHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccccc---cccccc-------ccchh-------------HHHH
Confidence 479999999999999999999999 59999887433222211 111000 01121 2334
Q ss_pred HHHHHHHHhCCCceEEEeeCCh--HHHHHHHhCCCCeeec
Q 000968 1089 RTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAGATAVVP 1126 (1207)
Q Consensus 1089 ~i~l~aR~l~P~i~IIaRa~d~--~~~~~L~~aGAd~VI~ 1126 (1207)
.+...+++.||.+++.+...+. +....+- .+.|.||.
T Consensus 60 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-~~~d~vi~ 98 (135)
T PF00899_consen 60 AAKERLQEINPDVEVEAIPEKIDEENIEELL-KDYDIVID 98 (135)
T ss_dssp HHHHHHHHHSTTSEEEEEESHCSHHHHHHHH-HTSSEEEE
T ss_pred HHHHHHHHhcCceeeeeeecccccccccccc-cCCCEEEE
Confidence 5667788999999988876655 4444444 38898884
No 231
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.71 E-value=46 Score=41.79 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=26.7
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000968 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1207)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m~~ae~av~~e~e~~~ 345 (1207)
..|...-.|.+......+..|.|+.++.+-++.++....-+|... +|+-.|+||++
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL--------~aa~ke~eaaK 427 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL--------EAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 334444444444444444444455555444444444444444443 34566666654
No 232
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=86.62 E-value=76 Score=37.57 Aligned_cols=132 Identities=17% Similarity=0.073 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhhcccch------hHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc--chhhHHHHHHHHHHHHHHHH
Q 000968 845 SMALGAFLAGLLLAETEF------SLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS--NFPVITGALGLLIGGKTILV 916 (1207)
Q Consensus 845 S~~LGAFvAGLvLsn~~~------~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~--~~~~illlllllll~K~l~v 916 (1207)
++.+=+.+.|++++-.+. ..-+.+.+..+.....|+-.+.+|+.+....... .+......+++.+++-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 566666667777664431 1455566666777889999889998886543322 23333344667777778888
Q ss_pred HHHHHhhCcchhhhhhhhh-hcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHH
Q 000968 917 ALVGRLFGVSVISAIRTGL-LLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWL 979 (1207)
Q Consensus 917 ~l~~~l~g~~~real~lGL-~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL 979 (1207)
+...++++++......+-+ .-.|-+.. ....+..++.-.+.....+++..+++++..|++
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~---~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAIN---SFVIASLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888765432221111 22344333 333344455544555566666666666666653
No 233
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=86.53 E-value=15 Score=43.59 Aligned_cols=146 Identities=22% Similarity=0.257 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhcc--hHHHH-HHHHHHhhcccchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhcc---chhhHH
Q 000968 829 LLVILGTSLLTARAGL--SMALG-AFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVIT 902 (1207)
Q Consensus 829 Lal~Lg~a~Lae~lGL--S~~LG-AFvAGLvLsn~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~---~~~~il 902 (1207)
+.+.+..+++.+.+|+ ...+| ..++|++..-....-.+.. .++.+-..+.=+.+|.++.++.+.. +|+.++
T Consensus 15 l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~---~l~~~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~ 91 (352)
T COG3180 15 LLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPR---GLFKAGQVILGIMIGASLTPSVLDTLKSNWPIVL 91 (352)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCCh---HHHHHHHHHHHHHHhhhcCHHHHHHHHHcccHHH
Confidence 3444445566666555 35666 5555555442211111111 1122223344456888887766543 677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhh
Q 000968 903 GALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1207)
Q Consensus 903 llllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~ 982 (1207)
+++++.++.-.+..|+..|+.+++..++++- ..|+|.-.++..+ .+.|--...+.-+-.+-+++-....|++.++
T Consensus 92 ~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~g---s~PGgas~m~~iA--~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~ 166 (352)
T COG3180 92 VVLLLTLLSSILLGWLLKRFSILPGNTAFLG---SSPGGASAMVSIA--QDYGADLRLVALMQYLRVLFVVLLAPLVSRL 166 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhhHh---cCCchHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777778888888887877776644 3788877766655 3433322222222222333334456766653
No 234
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.47 E-value=2.5 Score=48.28 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=35.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhh
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR 1049 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r 1049 (1207)
+|.|+|.|.+|..++..|...|++|+++|.+++.++.++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 688999999999999999999999999999998776553
No 235
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.44 E-value=8.1 Score=45.18 Aligned_cols=132 Identities=15% Similarity=0.152 Sum_probs=77.1
Q ss_pred ccccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHh--h--hh----CCCC-EEEecCCCHHHHHhcCccccCEEEE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAI--G--RA----LDLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~--~--r~----~g~~-vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
.++.|+|.|.+|..++..|...+ .+++++|.|+++.+- + .. .+.. .+.+ .++.+ .+..||.||+
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~-----~l~~ADiVVi 79 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE-----DIKDSDVVVI 79 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH-----HhCCCCEEEE
Confidence 47899999999999999998888 589999999876431 1 10 1111 2222 12322 3378899999
Q ss_pred ecCCcc-----------hh----HHHHHHHHHhCCCceEEEeeCChH--HHHHHHhC-C--CCeeecCC-cHHHHHHHHH
Q 000968 1080 TLDTPG-----------AN----YRTVWALSKYFPNVKTFVRAHDID--HGLNLEKA-G--ATAVVPET-LEPSLQLAAA 1138 (1207)
Q Consensus 1080 atddd~-----------~N----i~i~l~aR~l~P~i~IIaRa~d~~--~~~~L~~a-G--Ad~VI~p~-~eaal~La~~ 1138 (1207)
+...+. .| ..++..+.+.+|+..++.- .++. ....+.+. | ...|+--. ..-+.++-..
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv-sNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~ 158 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICV-TNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCN 158 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHH
Confidence 884421 12 3566677788898644444 4443 22333333 3 45676222 3333344444
Q ss_pred HHHHcCCCHH
Q 000968 1139 VLAQAKLPAS 1148 (1207)
Q Consensus 1139 iL~~lg~~~~ 1148 (1207)
+-+.+++++.
T Consensus 159 la~~l~v~~~ 168 (319)
T PTZ00117 159 LAEKLGVSPG 168 (319)
T ss_pred HHHHhCCCcc
Confidence 5555555543
No 236
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.43 E-value=2.3 Score=50.44 Aligned_cols=72 Identities=17% Similarity=0.020 Sum_probs=52.8
Q ss_pred cccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1009 k~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
+..|+|.|. |-+|+.+++.|.+.|+.|+++++.+............++.||.++.+.+.++- .++|.||-+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~D~Vih~A 93 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVT-KGVDHVFNLA 93 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHH-hCCCEEEEcc
Confidence 346888887 99999999999999999999997543211111123578889999998887652 4577777665
No 237
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=86.42 E-value=7.5 Score=46.00 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc-----hhH-HHHHHHHHHHHHHHHhhc-cChhHHHhchhhHH
Q 000968 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV-----HGT-KAIAEFGVVFLLFNIGLE-LSVERLSSMKKYVF 685 (1207)
Q Consensus 613 A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~-----~~l-~~LaeLGLv~LLF~aGLE-ldl~~Lr~~~k~il 685 (1207)
-++++.++..++++|+.+..++.|+++-- +|++++. ... +++..-....+++-+|+. +|++.+.+......
T Consensus 191 ~y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 191 LFMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 34445566677788999999999999974 5666542 122 355555566677778987 89999988773333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCh-HHHHHHhhccc
Q 000968 686 GLGSAQVLVTAVVVGLVAHFVSGLPG-PASIVIGNGLA 722 (1207)
Q Consensus 686 ~Lg~l~vllt~vlvglll~~llGls~-~~ALlLGailS 722 (1207)
.+..+..++..++.+++...++|+=+ ..|+.-|.+.+
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~ 306 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNS 306 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhcc
Confidence 33333334444455555566778744 44555554443
No 238
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=86.37 E-value=0.51 Score=48.52 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=54.7
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
.+|+|.|.+++.+++.....|+.++++|.++++... ..-+. .....+..+...+....+| +.+.+...-..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~~-----~~~~~-~~~~~~~~~~~~~~~~t~V-v~th~h~~D~~~L 73 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFPE-----ADEVI-CIPPDDILEDLEIDPNTAV-VMTHDHELDAEAL 73 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-TT-----SSEEE-CSHHHHHHHHC-S-TT-EE-E--S-CCCHHHHH
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccCC-----CCccE-ecChHHHHhccCCCCCeEE-EEcCCchhHHHHH
Confidence 379999999999999999999999999999875432 12222 2233556677788888887 5666655555666
Q ss_pred HHHHHhCCCceEEEeeCChHH
Q 000968 1092 WALSKYFPNVKTFVRAHDIDH 1112 (1207)
Q Consensus 1092 l~aR~l~P~i~IIaRa~d~~~ 1112 (1207)
..+-+..+ -+|=+.......
T Consensus 74 ~~~l~~~~-~YiG~lGS~~k~ 93 (136)
T PF13478_consen 74 EAALASPA-RYIGLLGSRRKA 93 (136)
T ss_dssp HHHTTSS--SEEEESS-HHHH
T ss_pred HHHHcCCC-CEEEeecCchHH
Confidence 55555533 244444443333
No 239
>PRK05086 malate dehydrogenase; Provisional
Probab=86.35 E-value=4.9 Score=46.87 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=76.5
Q ss_pred cccccCC-CchHHHHHHHHHh---cCCCeEeecCChHHHH---hhhhCC-CCEEEe-cCCCHHHHHhcCccccCEEEEec
Q 000968 1011 HIILCGF-GRVGQIIAQLLSE---RLIPFVALDVRSDRVA---IGRALD-LPVYFG-DAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~---~gi~vvVID~D~e~ve---~~r~~g-~~vi~G-Datd~evL~~AgI~~A~~VViat 1081 (1207)
++.|+|. |.+|+.++..|.. .+..++++|.++.... .+...+ ...+.| +..+. .+ .+..+|.||++.
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~--~~--~l~~~DiVIita 77 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDP--TP--ALEGADVVLISA 77 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCH--HH--HcCCCCEEEEcC
Confidence 5789999 9999999988844 3457899998755311 112212 235566 22331 12 225699999998
Q ss_pred CCcc-----------hh----HHHHHHHHHhCCCceEEEeeCChHHHHH------H-Hh--CCCCeeecCCcHHHHHHHH
Q 000968 1082 DTPG-----------AN----YRTVWALSKYFPNVKTFVRAHDIDHGLN------L-EK--AGATAVVPETLEPSLQLAA 1137 (1207)
Q Consensus 1082 ddd~-----------~N----i~i~l~aR~l~P~i~IIaRa~d~~~~~~------L-~~--aGAd~VI~p~~eaal~La~ 1137 (1207)
..+. .| ..++..+++.+|+ .+++.+.+|.++-- + +. .....|+--...-+.++-.
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~ 156 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSET 156 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHH
Confidence 7631 23 3455677888888 56666677663111 1 22 3345566444344455555
Q ss_pred HHHHHcCCCH
Q 000968 1138 AVLAQAKLPA 1147 (1207)
Q Consensus 1138 ~iL~~lg~~~ 1147 (1207)
.+-..+++++
T Consensus 157 ~ia~~l~~~~ 166 (312)
T PRK05086 157 FVAELKGKQP 166 (312)
T ss_pred HHHHHhCCCh
Confidence 5555554443
No 240
>PRK05693 short chain dehydrogenase; Provisional
Probab=86.34 E-value=1.2 Score=49.66 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=57.8
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhc------CccccCEEEEecC
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV------GAERACAAAITLD 1082 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~A------gI~~A~~VViatd 1082 (1207)
.++|.|. |.+|+.+++.|.+.|..|++++++++..+.....+..++.+|.++++.++++ ...+.|.+|-...
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4667764 7899999999999999999999999888777777888899999998877543 1245677777654
No 241
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.30 E-value=4.9 Score=46.92 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=78.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhh----hhC----CCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RAL----DLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~----r~~----g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
.++.|+|.|.+|..++..|...++ .++++|.++++.+-. ... ....+++ .+ .+ ...+||.||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~---~~--~~~~adivIi 79 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD---YS--DCKDADLVVI 79 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC---HH--HhCCCCEEEE
Confidence 479999999999999999999888 799999988764311 111 1112232 22 22 3578999999
Q ss_pred ecCCc-----------chhHHH----HHHHHHhCCCceEEEeeCChHHHH--HH-HhCC--CCeeecC-CcHHHHHHHHH
Q 000968 1080 TLDTP-----------GANYRT----VWALSKYFPNVKTFVRAHDIDHGL--NL-EKAG--ATAVVPE-TLEPSLQLAAA 1138 (1207)
Q Consensus 1080 atddd-----------~~Ni~i----~l~aR~l~P~i~IIaRa~d~~~~~--~L-~~aG--Ad~VI~p-~~eaal~La~~ 1138 (1207)
+...+ ..|..+ +..+++.+|+..+++-. ++.+.. .+ +..| ...||-- +..=+.++-+.
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs-NP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~ 158 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS-NPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYM 158 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-CcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHH
Confidence 88764 235443 55677888987766555 544321 22 2233 2244422 22223444444
Q ss_pred HHHHcCCCHHH
Q 000968 1139 VLAQAKLPASE 1149 (1207)
Q Consensus 1139 iL~~lg~~~~e 1149 (1207)
+-..+++++.+
T Consensus 159 la~~l~v~~~~ 169 (315)
T PRK00066 159 LSEKLDVDPRS 169 (315)
T ss_pred HHHHhCCCccc
Confidence 54555555443
No 242
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=86.27 E-value=1.2 Score=49.79 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=72.1
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.||+|||.|.+|...++.|-..|+ ..++||.|.=.+.... ...+...|| +.+++ .
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~N-RQi~A~~~~-----------iGk~K-----------v 86 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTN-RQIHALLGD-----------IGKPK-----------V 86 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccc-hhhHhhhhh-----------cccHH-----------H
Confidence 4699999999999999999999998 6889988744332221 111111111 11111 1
Q ss_pred HHHHHHHHHhCCCceEEEeeC--ChHHHHHHHhCCCCeeec--CCcHHHHHHHHHHH
Q 000968 1088 YRTVWALSKYFPNVKTFVRAH--DIDHGLNLEKAGATAVVP--ETLEPSLQLAAAVL 1140 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~--d~~~~~~L~~aGAd~VI~--p~~eaal~La~~iL 1140 (1207)
..+...++..||.+++-++.. ++++.+.+-.-+-|+||. .+..+=..|.....
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~ 143 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCR 143 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHH
Confidence 245567889999988776654 678888888889999993 34433344444444
No 243
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.21 E-value=2.6 Score=44.91 Aligned_cols=92 Identities=20% Similarity=0.100 Sum_probs=58.2
Q ss_pred cccccCCCchHHHHHHHHHhcCCC-eEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
+|+|+|.|-+|..+++.|...|+. ++++|.|.-....+.+ .+ +.. ...|-. ....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~R---q~-~~~-------~~vg~~-------------Ka~~ 56 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNR---QQ-YFL-------SQIGEP-------------KVEA 56 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhc---cc-ccH-------hhCCCh-------------HHHH
Confidence 578999999999999999999996 9999998532222211 11 110 011211 2234
Q ss_pred HHHHHHHhCCCceEEEeeCChHH--HHHHHhCCCCeeecC
Q 000968 1090 TVWALSKYFPNVKTFVRAHDIDH--GLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~~~--~~~L~~aGAd~VI~p 1127 (1207)
+...++++||++++.+.....+. ...+- .+.|.||.-
T Consensus 57 ~~~~l~~lnp~v~i~~~~~~~~~~~~~~~l-~~~DlVi~~ 95 (174)
T cd01487 57 LKENLREINPFVKIEAINIKIDENNLEGLF-GDCDIVVEA 95 (174)
T ss_pred HHHHHHHHCCCCEEEEEEeecChhhHHHHh-cCCCEEEEC
Confidence 55678899999998776554432 22222 378988844
No 244
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.16 E-value=4.1 Score=51.16 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=57.1
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh---------------CCCCEEEecCCCHHHHHhcCccc
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---------------LDLPVYFGDAGSREVLHKVGAER 1073 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~---------------~g~~vi~GDatd~evL~~AgI~~ 1073 (1207)
..++|.|. |.+|+.+++.|.+.|+.|+++++++++.+.... .++.++.||.++.+.++++ +..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a-Lgg 159 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA-LGN 159 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH-hcC
Confidence 34666665 899999999999999999999999887654321 1367899999999988663 567
Q ss_pred cCEEEEecCC
Q 000968 1074 ACAAAITLDT 1083 (1207)
Q Consensus 1074 A~~VViatdd 1083 (1207)
+|+||.+...
T Consensus 160 iDiVVn~AG~ 169 (576)
T PLN03209 160 ASVVICCIGA 169 (576)
T ss_pred CCEEEEcccc
Confidence 8888887653
No 245
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.93 E-value=3 Score=51.80 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=71.0
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCC-------------HHHHH------hc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS-------------REVLH------KV 1069 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd-------------~evL~------~A 1069 (1207)
..+|+|+|.|.+|...+..++..|..|+++|.++++.+..++.|..++.=|..+ .+..+ .-
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 568999999999999999999999999999999999999999998755333322 11111 11
Q ss_pred CccccCEEEEecCCcch--hHH-HHHHHHHhCCCceEEEeeC
Q 000968 1070 GAERACAAAITLDTPGA--NYR-TVWALSKYFPNVKTFVRAH 1108 (1207)
Q Consensus 1070 gI~~A~~VViatddd~~--Ni~-i~l~aR~l~P~i~IIaRa~ 1108 (1207)
.+..+|.+|-++..+.. -.. +-...+...|.-.|+-..-
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 23579999999977541 122 3455566667655554444
No 246
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=85.86 E-value=3 Score=51.39 Aligned_cols=72 Identities=25% Similarity=0.396 Sum_probs=55.8
Q ss_pred cccccCCCchHHHHHHHHHhc--CCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHh-------------cCccccC
Q 000968 1011 HIILCGFGRVGQIIAQLLSER--LIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK-------------VGAERAC 1075 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~--gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~-------------AgI~~A~ 1075 (1207)
.+.|+|.|.+|..++-.|.+. |++|+.+|.|+++++.+++.+.++. +..-.+.+.+ ..+.+|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~--e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIY--EPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccC--CCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 378899999999999999988 4789999999999999887765542 4445555432 1356799
Q ss_pred EEEEecCCc
Q 000968 1076 AAAITLDTP 1084 (1207)
Q Consensus 1076 ~VViatddd 1084 (1207)
+++++.+.+
T Consensus 81 vi~I~V~TP 89 (473)
T PLN02353 81 IVFVSVNTP 89 (473)
T ss_pred EEEEEeCCC
Confidence 999987644
No 247
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.74 E-value=2.1 Score=52.09 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=60.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChH-HH----HhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RV----AIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e-~v----e~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
++.|+|.|..|...++.|...|+.|++.|.++. .. +.+++.|+.+..|...+.+.++. .+.+.+.||....-+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d~vv~s~gi~~ 80 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPDLVVVSPGIPW 80 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCCEEEECCCCCC
Confidence 578999999999999999999999999997653 22 23567799998887666543222 3456788888666665
Q ss_pred hhHHHHHHHHHh
Q 000968 1086 ANYRTVWALSKY 1097 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l 1097 (1207)
.|- ....+|+.
T Consensus 81 ~~~-~~~~a~~~ 91 (459)
T PRK02705 81 DHP-TLVELRER 91 (459)
T ss_pred CCH-HHHHHHHc
Confidence 553 33334443
No 248
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=85.72 E-value=1.2 Score=52.91 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=72.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
.+.|+|.|..|+.++...++.|+.++++|.+++..... .--..+.+|..|++.+.+.- +.++.+ +.+.+..+...
T Consensus 4 ~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~--~ad~~~~~~~~D~~~l~~~a-~~~dvi--t~e~e~i~~~~ 78 (372)
T PRK06019 4 TIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQ--VADEVIVADYDDVAALRELA-EQCDVI--TYEFENVPAEA 78 (372)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhH--hCceEEecCCCCHHHHHHHH-hcCCEE--EeCcCCCCHHH
Confidence 57899999999999999999999999999987653221 12356778999999988763 577765 33333333333
Q ss_pred HHHHH---HhCCCceEEEeeCChH-HHHHHHhCCCC
Q 000968 1091 VWALS---KYFPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1207)
Q Consensus 1091 ~l~aR---~l~P~i~IIaRa~d~~-~~~~L~~aGAd 1122 (1207)
...+. ..+|+...+..+.|.. ....|.++|+.
T Consensus 79 l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip 114 (372)
T PRK06019 79 LDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIP 114 (372)
T ss_pred HHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCC
Confidence 22222 2346666666677764 44556777765
No 249
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=85.71 E-value=1.5 Score=51.25 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=54.3
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh-----hCCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r-----~~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
.+++|.| .|-+|+.+++.|.+.|++|++++++++..+... ..++.++.+|.++++.++++ +.+.|.||-+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~A 87 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA-VKGCDGVFHVA 87 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-HcCCCEEEECC
Confidence 4688888 589999999999999999999988876543321 12467889999999888765 34567777655
No 250
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.70 E-value=4.8 Score=45.82 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=34.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVA 1046 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve 1046 (1207)
++.|+|.|.+|..++..|...|++++++|.|+++++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD 40 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence 588999999999999999999999999999999885
No 251
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=85.53 E-value=5.8 Score=45.07 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=66.6
Q ss_pred cccccCCCchHHHHHHHHHhcC--CC-eEeecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL--IP-FVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g--i~-vvVID~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
++.|+|+|.+|+.+++.|.+.+ .. +.++|.++++.+.+.+ .+.++ + ++.+-+. .++|.|+++++.+.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~-~---~~~~ell----~~~DvVvi~a~~~~- 73 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKA-C---LSIDELV----EDVDLVVECASVNA- 73 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCee-E---CCHHHHh----cCCCEEEEcCChHH-
Confidence 4789999999999999998753 44 5578999988776643 33332 2 2333332 57899999987543
Q ss_pred hHHHHHHHHHhCCCceEEEeeC----ChHHHHHH----HhCCCCeeecCCcHH
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAH----DIDHGLNL----EKAGATAVVPETLEP 1131 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~----d~~~~~~L----~~aGAd~VI~p~~ea 1131 (1207)
....+..+.+.+.+ +++... |.+....| ++.|....+++....
T Consensus 74 ~~~~~~~al~~Gk~--Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~ 124 (265)
T PRK13304 74 VEEVVPKSLENGKD--VIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIV 124 (265)
T ss_pred HHHHHHHHHHcCCC--EEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHH
Confidence 34444445455554 444332 44433333 455766555444333
No 252
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=85.49 E-value=1.3 Score=52.48 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=33.7
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCC---hHHH
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVR---SDRV 1045 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D---~e~v 1045 (1207)
....+||+|.|-.|..++..|.+.|..|.|||+| |+|+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRi 84 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRI 84 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHH
Confidence 3445999999999999999999999999999999 5554
No 253
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=85.49 E-value=38 Score=37.97 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-------HHHHHhcchHHHHHHHHHHhhcccch
Q 000968 790 AVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS-------LLTARAGLSMALGAFLAGLLLAETEF 862 (1207)
Q Consensus 790 ll~~il~iil~lllg~~llrpll~~ia~~~s~elf~l~~Lal~Lg~a-------~Lae~lGLS~~LGAFvAGLvLsn~~~ 862 (1207)
........+.+-++.+++.+.++++....--..+.+...+++++... +....==++..+|+=+--+.+|=.+.
T Consensus 3 ~~~~~~f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq 82 (230)
T COG1346 3 ILTSPLFGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLLGPATVALAVPLYKQ 82 (230)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHHHH
Q ss_pred hHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcc
Q 000968 863 SLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGE 942 (1207)
Q Consensus 863 ~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe 942 (1207)
++.+.+ +|..++..+++..+.-++..++.++++|.+. .+-..+.||+.
T Consensus 83 ~~~ik~----------------------------~w~~I~~g~~vGs~~ai~s~~llak~~g~~~----~~~~Sl~PkSv 130 (230)
T COG1346 83 RHLIKR----------------------------HWKPILAGVLVGSVVAIISGVLLAKLFGLSP----ELILSLLPKSV 130 (230)
T ss_pred HHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHhccccc
Q ss_pred hhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 000968 943 FAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQ 984 (1207)
Q Consensus 943 ~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~ 984 (1207)
..-+.+.+....|-+++-....++++-++..+++|.+.+..+
T Consensus 131 TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 131 TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
No 254
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.38 E-value=1.3 Score=50.59 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=35.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~ 1048 (1207)
.++.|+|.|.+|..++..|...|++|+++|.+++.++..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 368899999999999999999999999999999988653
No 255
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.01 E-value=5.2 Score=43.53 Aligned_cols=94 Identities=24% Similarity=0.213 Sum_probs=60.2
Q ss_pred cccccccCCCchHHHHHHHHHhcCCC-eEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.+|+|+|.|.+|.++++.|...|+. ++++|.|.-....+ +..+++.. +..|-.+|
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL---~rqfl~~~-------~diG~~Ka------------- 77 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDL---GAQFLIPA-------EDLGQNRA------------- 77 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhC---CCCccccH-------HHcCchHH-------------
Confidence 45899999999999999999999995 88998874333222 22233321 11222222
Q ss_pred HHHHHHHHHhCCCceEEEeeCChH--HHHHHHhCCCCeeecC
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPE 1127 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d~~--~~~~L~~aGAd~VI~p 1127 (1207)
..+...++++||++++-+...... ..+.+ .+.|.||..
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~--~~~dvVi~~ 117 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDISEKPEEFF--SQFDVVVAT 117 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccccHHHHH--hCCCEEEEC
Confidence 345667889999988876654332 12222 467888843
No 256
>PRK05884 short chain dehydrogenase; Provisional
Probab=85.00 E-value=1.5 Score=47.96 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=53.2
Q ss_pred ccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh-hCCCCEEEecCCCHHHHHhcCc---cccCEEEEe
Q 000968 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGA---ERACAAAIT 1080 (1207)
Q Consensus 1012 VIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r-~~g~~vi~GDatd~evL~~AgI---~~A~~VVia 1080 (1207)
++|.|. |.+|+.+++.|.+.|..++++++++++.+... ..+..++.+|.++++.++++-- .+.|.+|-.
T Consensus 3 vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 3 VLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred EEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 566665 88999999999999999999999988876553 3367889999999998765421 245666653
No 257
>PRK09414 glutamate dehydrogenase; Provisional
Probab=84.99 E-value=3.2 Score=50.70 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=73.4
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEee-c----------CChHHHHhhhhC--C-CCEEE---e-cC-CCHHHHHhcC
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVAL-D----------VRSDRVAIGRAL--D-LPVYF---G-DA-GSREVLHKVG 1070 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVI-D----------~D~e~ve~~r~~--g-~~vi~---G-Da-td~evL~~Ag 1070 (1207)
.+++|.|+|.+|+.+++.|.+.|..++.+ | .|.+.+...+.. + +.-+. | .. .+.++| .
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~-~-- 309 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW-S-- 309 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc-c--
Confidence 47999999999999999999999999998 8 677765444322 1 11111 1 11 222222 2
Q ss_pred ccccCEEEEecCCcchhHHHHHHHHHhCCCceEEEeeCC----hHHHHHHHhCCCCe
Q 000968 1071 AERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATA 1123 (1207)
Q Consensus 1071 I~~A~~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d----~~~~~~L~~aGAd~ 1123 (1207)
.++|.+|=+.-.+..|-..+..++. +++++|+..-+ ++..+.|.+-|+-.
T Consensus 310 -~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~~ 363 (445)
T PRK09414 310 -VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVLF 363 (445)
T ss_pred -cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcEE
Confidence 3688888777766666666655543 35789998764 67888898888543
No 258
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.96 E-value=1.1e+02 Score=42.32 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=52.7
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccHH
Q 000968 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVA-FEIEATQRVNDAE 351 (1207)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m~~ae~av~-~e~e~~~~~~~~~ 351 (1207)
.++.+..++..+..|+++.+.++......+++++.+++...+++..-.+++.++.+...-.++.-. .+-+..+|-...+
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 684 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIE 684 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666666666666666666544433221 1222233444555
Q ss_pred HHHHHHHHhhcCCC
Q 000968 352 IALQRAEKSLSNSS 365 (1207)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (1207)
.++++++..+..++
T Consensus 685 ~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 685 EQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655554
No 259
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.81 E-value=2.2 Score=49.90 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=77.7
Q ss_pred ccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHH--hh---hh---CCCC-EEEecCCCHHHHHhcCccccCEEEE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA--IG---RA---LDLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve--~~---r~---~g~~-vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
.++.|+|.|.+|..++..+...+. +++++|.|++..+ .+ .. .+.+ -+.+. +| ++ .+..||.||.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-~d---~~--~l~~aDiVI~ 80 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-NN---YE--DIAGSDVVIV 80 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-CC---HH--HhCCCCEEEE
Confidence 478999999999999999988885 8999999998542 11 11 1222 23321 22 22 3588999999
Q ss_pred ecCCc----------------chhH----HHHHHHHHhCCCceEEEeeCChHH--HHHHHh-CCC--CeeecCC-cHHHH
Q 000968 1080 TLDTP----------------GANY----RTVWALSKYFPNVKTFVRAHDIDH--GLNLEK-AGA--TAVVPET-LEPSL 1133 (1207)
Q Consensus 1080 atddd----------------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~~--~~~L~~-aGA--d~VI~p~-~eaal 1133 (1207)
+...+ ..|. .++..+++.+|+..++.-+ ++.+ ...+.+ .|. +.||--. ..-+.
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s-NP~di~t~~~~~~sg~p~~rviGlgt~lds~ 159 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT-NPLDVMVKLLQEHSGLPKNKVCGMAGVLDSS 159 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHHHHhcCCChhhEEEecCcccHH
Confidence 77332 2243 3455677788886444444 5442 233333 343 4666322 33334
Q ss_pred HHHHHHHHHcCCCHH
Q 000968 1134 QLAAAVLAQAKLPAS 1148 (1207)
Q Consensus 1134 ~La~~iL~~lg~~~~ 1148 (1207)
++-+.+-..+++++.
T Consensus 160 R~~~~la~~l~v~~~ 174 (321)
T PTZ00082 160 RLRTYIAEKLGVNPR 174 (321)
T ss_pred HHHHHHHHHhCCCcc
Confidence 455555555555443
No 260
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.76 E-value=2.5 Score=52.39 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=67.3
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCC-------------CHHHH------Hhc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAG-------------SREVL------HKV 1069 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDat-------------d~evL------~~A 1069 (1207)
..+++|+|+|..|...++.++..|..++++|.++++.+..+..|..++.=|.. ..+.. ..-
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999888888777544421 11211 122
Q ss_pred CccccCEEEEec---CCcchhHHHHHHHHHhCCCceEE
Q 000968 1070 GAERACAAAITL---DTPGANYRTVWALSKYFPNVKTF 1104 (1207)
Q Consensus 1070 gI~~A~~VViat---ddd~~Ni~i~l~aR~l~P~i~II 1104 (1207)
.+.++|.+|.+. ..+..-+.+-...+.+-|.-.|+
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 357799998887 22222233444466666665554
No 261
>PRK13243 glyoxylate reductase; Reviewed
Probab=84.73 E-value=1.3 Score=51.91 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=56.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
..++.|+|+|.+|+.+++.|+..|.++++.|++++... ....+.. ..+ |.++ +.+||.|++.++....+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~---l~el-l~~aDiV~l~lP~t~~T~ 219 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-----YRP---LEEL-LRESDFVSLHVPLTKETY 219 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-----ecC---HHHH-HhhCCEEEEeCCCChHHh
Confidence 35689999999999999999999999999998765422 2222321 112 2222 467899999998765443
Q ss_pred HHH--HHHHHhCCCceEE
Q 000968 1089 RTV--WALSKYFPNVKTF 1104 (1207)
Q Consensus 1089 ~i~--l~aR~l~P~i~II 1104 (1207)
.++ .....+-|+..+|
T Consensus 220 ~~i~~~~~~~mk~ga~lI 237 (333)
T PRK13243 220 HMINEERLKLMKPTAILV 237 (333)
T ss_pred hccCHHHHhcCCCCeEEE
Confidence 332 3444555664444
No 262
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=84.70 E-value=1.6 Score=51.44 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=69.2
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCc-cccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA-ERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI-~~A~~VViatddd~~Ni~ 1089 (1207)
.+.|+|.|..|+.+++.+.+.|+.++++|.+++..... .--..+.+|..|++.+.+.-- .+.|.|+...++- ...
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v--~~~ 76 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVINMLDGDALRAVIEREKPDYIVPEIEAI--ATD 76 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhh--hCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCcc--CHH
Confidence 36899999999999999999999999999998654322 122456788888887755422 3678776655442 222
Q ss_pred HHHHHHHh----CCCceEEEeeCChHHHHHH--HhCCCC
Q 000968 1090 TVWALSKY----FPNVKTFVRAHDIDHGLNL--EKAGAT 1122 (1207)
Q Consensus 1090 i~l~aR~l----~P~i~IIaRa~d~~~~~~L--~~aGAd 1122 (1207)
....+.+. .|+...+..+.|......+ ++.|+.
T Consensus 77 ~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip 115 (380)
T TIGR01142 77 ALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLP 115 (380)
T ss_pred HHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCC
Confidence 22223332 2333444444566555442 678865
No 263
>PLN03139 formate dehydrogenase; Provisional
Probab=84.67 E-value=3 Score=50.12 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=59.6
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.++-|+|+|++|+.+++.|...|.++.+.|+.+...+.....|+.. -+ +-.+++ .++|.|++.++....+..
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~--~~-~l~ell-----~~sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF--EE-DLDAML-----PKCDVVVINTPLTEKTRG 271 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee--cC-CHHHHH-----hhCCEEEEeCCCCHHHHH
Confidence 4688999999999999999999999999998753333333333221 11 122222 568999999987755544
Q ss_pred HH--HHHHHhCCCceEEEeeC
Q 000968 1090 TV--WALSKYFPNVKTFVRAH 1108 (1207)
Q Consensus 1090 i~--l~aR~l~P~i~IIaRa~ 1108 (1207)
+. ..+..+.|+..+|-.++
T Consensus 272 li~~~~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNAR 292 (386)
T ss_pred HhCHHHHhhCCCCeEEEECCC
Confidence 33 34555667655554444
No 264
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.61 E-value=2.2 Score=49.19 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=74.8
Q ss_pred cccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhh----hC----CC-CEEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGR----AL----DL-PVYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r----~~----g~-~vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
++.|+|.|.+|..++..+...+. +++++|.|+++.+... .. +. .-+.+. ++ ++ .+.+||.||++
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~-~d---~~--~~~~aDiVii~ 77 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGT-ND---YE--DIAGSDVVVIT 77 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeC-CC---HH--HHCCCCEEEEC
Confidence 68999999999999999988765 9999999987653211 11 11 112211 12 22 35789999988
Q ss_pred cCCcc-----------hhH----HHHHHHHHhCCCceEEEeeCChH-HHHHH-HhCCC--CeeecC-CcHHHHHHHHHHH
Q 000968 1081 LDTPG-----------ANY----RTVWALSKYFPNVKTFVRAHDID-HGLNL-EKAGA--TAVVPE-TLEPSLQLAAAVL 1140 (1207)
Q Consensus 1081 tddd~-----------~Ni----~i~l~aR~l~P~i~IIaRa~d~~-~~~~L-~~aGA--d~VI~p-~~eaal~La~~iL 1140 (1207)
.+.+. .|. .++..+++..|+..+++-++-.+ ....+ +..|. ..|+-- +..-+.++-..+-
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la 157 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIA 157 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHH
Confidence 64331 343 34455667778754554444332 22222 22343 466633 2333444555555
Q ss_pred HHcCCCHH
Q 000968 1141 AQAKLPAS 1148 (1207)
Q Consensus 1141 ~~lg~~~~ 1148 (1207)
+.++++++
T Consensus 158 ~~l~v~~~ 165 (307)
T PRK06223 158 EELNVSVK 165 (307)
T ss_pred HHhCcChh
Confidence 55554443
No 265
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.58 E-value=4.3 Score=48.54 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=56.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHH--------------hcCccccCE
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH--------------KVGAERACA 1076 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~--------------~AgI~~A~~ 1076 (1207)
++.|+|.|-+|...+--|.+.|++|+.+|.|+++++.+.+...|++- +-=++.|+ +..+.+++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence 36789999999999999999999999999999999988766555552 22223333 234668999
Q ss_pred EEEecCCc
Q 000968 1077 AAITLDTP 1084 (1207)
Q Consensus 1077 VViatddd 1084 (1207)
++++++.|
T Consensus 80 ~fIavgTP 87 (414)
T COG1004 80 VFIAVGTP 87 (414)
T ss_pred EEEEcCCC
Confidence 99988776
No 266
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=84.54 E-value=13 Score=42.07 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000968 152 ELRELLMNAMKELEVAQLN-STMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (1207)
Q Consensus 152 ~l~~~l~~a~~~~e~a~~~-~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a 230 (1207)
.--+-+.+-.++|+.||-. +...-+-.+++.+.+=-|-.-...|+-=.+ ....-.+.-.+=-.|....++|.-+...|
T Consensus 18 ~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYye-a~~~a~~aq~e~q~Aa~~yerA~~~h~aA 96 (239)
T PF05276_consen 18 QATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYE-ARRKAKEAQQEAQKAALQYERANSMHAAA 96 (239)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677788888876 445555556666555555444333332222 00011111111123555556666666666
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 000968 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1207)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~ 310 (1207)
+..+.+|.+++.... + -+-...-.|.|--|-..+.+.+..-..+|.+-++...+-.++.++|-.|..
T Consensus 97 Ke~v~laEq~l~~~~-------~------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 97 KEMVALAEQSLMSDS-------N------WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHhcCC-------c------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665511 0 011223568899999999999999999999999888888888888888887
Q ss_pred HHHHHHHHH
Q 000968 311 VAEKAQMNA 319 (1207)
Q Consensus 311 ~~~~~~~~a 319 (1207)
.-.++=.++
T Consensus 164 ~lkr~I~KS 172 (239)
T PF05276_consen 164 KLKRAIKKS 172 (239)
T ss_pred HHHHHHHhh
Confidence 666554443
No 267
>PRK06101 short chain dehydrogenase; Provisional
Probab=84.41 E-value=1.7 Score=47.73 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=48.5
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC--CCCEEEecCCCHHHHHhc
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKV 1069 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~--g~~vi~GDatd~evL~~A 1069 (1207)
.++|.| .|.+|+.+++.|.++|..++++++++++.+..... +..++.+|.++++.++++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 356665 68899999999999999999999998887666433 477889999999977664
No 268
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.41 E-value=1.7 Score=47.73 Aligned_cols=73 Identities=18% Similarity=0.066 Sum_probs=55.3
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhcCc------cccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVGA------ERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~AgI------~~A~~ 1076 (1207)
.+++|.|. |.+|+.+++.|.+.|..++++++++++.+.... .+..++.+|.++++.++++-- .+.|.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 89 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDI 89 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence 46777775 899999999999999999999999887654422 246789999999987765421 24677
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|-...
T Consensus 90 li~~ag 95 (258)
T PRK06949 90 LVNNSG 95 (258)
T ss_pred EEECCC
Confidence 776554
No 269
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.30 E-value=1.6 Score=48.93 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=54.1
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----h----CCCCEEEecCCCHHHHHhc-----CccccC
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A----LDLPVYFGDAGSREVLHKV-----GAERAC 1075 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~----~g~~vi~GDatd~evL~~A-----gI~~A~ 1075 (1207)
.+++|+| .|.+|+.+++.|.++|+.+++++++++..+... . ..+.++.+|.+|++.+++. .....+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 83 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRID 83 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCee
Confidence 3567777 589999999999999999999999887654332 1 2467889999999987641 123457
Q ss_pred EEEEecC
Q 000968 1076 AAAITLD 1082 (1207)
Q Consensus 1076 ~VViatd 1082 (1207)
.+|.+..
T Consensus 84 ~vv~~ag 90 (280)
T PRK06914 84 LLVNNAG 90 (280)
T ss_pred EEEECCc
Confidence 7777653
No 270
>PRK09903 putative transporter YfdV; Provisional
Probab=84.29 E-value=89 Score=36.34 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcc--cchhHHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000968 846 MALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF 923 (1207)
Q Consensus 846 ~~LGAFvAGLvLsn--~~~~~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~ 923 (1207)
|.+-+.++|+++.- -+....+.+.++.+.+...|+-.+.+|+.+....+...+. .....++.++.-++.++.....+
T Consensus 174 P~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~~ 252 (314)
T PRK09903 174 PVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMAC 252 (314)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444332 2344566677777788888888888999886544322222 22333445555566666666666
Q ss_pred Ccchhhhhhhhhh--cCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhh
Q 000968 924 GVSVISAIRTGLL--LAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1207)
Q Consensus 924 g~~~real~lGL~--La~rGe~alVLa~lal~~glIs~el~siLvlvvvlS~lItPlL~~~ 982 (1207)
+++.... .+... ..|.+....+ .+.+++.-.+.....+.++++++.+..|++...
T Consensus 253 ~l~~~~~-~v~vl~aa~P~a~~~~i---~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 253 HLNSEHL-QMMVLAGALPPAFSGII---IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred CCCcHHH-HHHHHHHcccHHHHHHH---HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653222 12221 2344433333 344555433333444555566776667877653
No 271
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.28 E-value=5.7 Score=45.55 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=34.2
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHh
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~ 1047 (1207)
+|-|+|.|.+|..++..|...|++++++|.+++..+.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 5889999999999999999999999999999988764
No 272
>PLN02650 dihydroflavonol-4-reductase
Probab=84.27 E-value=1.3 Score=51.72 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=52.9
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh--------CCCCEEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~--------~g~~vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
.+++|.| .|-+|+.+++.|.+.|++|++++++++....... ..+.++.||.++++.+.++ +..++.||-+
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~~d~ViH~ 84 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRGCTGVFHV 84 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhCCCEEEEe
Confidence 3577777 4899999999999999999998887655432211 1367899999999888764 3456777654
Q ss_pred c
Q 000968 1081 L 1081 (1207)
Q Consensus 1081 t 1081 (1207)
.
T Consensus 85 A 85 (351)
T PLN02650 85 A 85 (351)
T ss_pred C
Confidence 4
No 273
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.27 E-value=1.9 Score=47.37 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=47.7
Q ss_pred ccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC--------CCC--EEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--------DLP--VYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1012 VIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~--------g~~--vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
+.|+| .|.+|..++..|.+.|+++++.++++++.+.+... |++ +... +..+. +..+|.||++
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~--~~~ea-----~~~aDvVila 75 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGA--DNAEA-----AKRADVVILA 75 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEe--ChHHH-----HhcCCEEEEE
Confidence 67897 89999999999999999999999999887665432 211 1111 11222 4578888888
Q ss_pred cCCcc
Q 000968 1081 LDTPG 1085 (1207)
Q Consensus 1081 tddd~ 1085 (1207)
++...
T Consensus 76 vp~~~ 80 (219)
T TIGR01915 76 VPWDH 80 (219)
T ss_pred CCHHH
Confidence 87753
No 274
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.26 E-value=7.1 Score=44.47 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=47.6
Q ss_pred cccccCCCchHHHHHHHHHhcC----CCeEeecCCh-HHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL----IPFVALDVRS-DRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g----i~vvVID~D~-e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
++.++|.|.+|..+++.|.+.| .++++.++++ ++.+.+.. .|.... . +..+. ++++|.||+++.++
T Consensus 5 kI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~--~~~e~-----~~~aDvVilav~p~ 76 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT-H--NKKEL-----LTDANILFLAMKPK 76 (279)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-C--CHHHH-----HhcCCEEEEEeCHH
Confidence 5789999999999999999887 6789999875 45565543 354322 1 11122 35789999999876
Q ss_pred c
Q 000968 1085 G 1085 (1207)
Q Consensus 1085 ~ 1085 (1207)
.
T Consensus 77 ~ 77 (279)
T PRK07679 77 D 77 (279)
T ss_pred H
Confidence 4
No 275
>PRK07060 short chain dehydrogenase; Provisional
Probab=84.05 E-value=1.8 Score=47.06 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=56.4
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcC--ccccCEEEEecC
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVG--AERACAAAITLD 1082 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-~g~~vi~GDatd~evL~~Ag--I~~A~~VViatd 1082 (1207)
..++|.|. |.+|+.+++.|.+.|.++++++++++..+.... .+..++.+|.++++.++++- ....|.+|-...
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag 86 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG 86 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence 46788887 799999999999999999999999887765543 36778899999988765531 234677776553
No 276
>PRK08219 short chain dehydrogenase; Provisional
Probab=84.01 E-value=2.1 Score=45.88 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=54.7
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh--hCCCCEEEecCCCHHHHHhcCc--cccCEEEEecC
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR--ALDLPVYFGDAGSREVLHKVGA--ERACAAAITLD 1082 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r--~~g~~vi~GDatd~evL~~AgI--~~A~~VViatd 1082 (1207)
+++|.| .|.+|+.+++.|.+. ..|++++++++..+.+. ..+..++.+|.+|++.++++=- .+.+.+|-+..
T Consensus 5 ~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 5 TALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred EEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 466666 588999999999998 99999999987765443 2367899999999988875322 25788877654
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.96 E-value=3.7 Score=48.37 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=60.6
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatd 1082 (1207)
-..+.|+|.|-.|...++..+..|.+|+++|.++++.+.+++.|-..+.-.. +++..++..- .+|.++.+.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADAIIDTVG 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcEEEECCC
Confidence 4578999999999999999999999999999999999999999876666444 6666666543 3999999988
No 278
>PRK08223 hypothetical protein; Validated
Probab=83.95 E-value=4.3 Score=46.86 Aligned_cols=115 Identities=16% Similarity=0.077 Sum_probs=70.4
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.+|+|+|.|-+|..++..|...|+ .++++|.|.=....+.. .+++.. ...|-. ..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnR---Q~l~~~-------~diG~~-------------Kv 83 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNR---QAGAMM-------STLGRP-------------KA 83 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccc---ccCcCh-------hHCCCc-------------HH
Confidence 4689999999999999999999998 58888887444333211 111110 001111 22
Q ss_pred HHHHHHHHHhCCCceEEEeeC--ChHHHHHHHhCCCCeeecCCcH---HHHHHHHHHHHHcCCCH
Q 000968 1088 YRTVWALSKYFPNVKTFVRAH--DIDHGLNLEKAGATAVVPETLE---PSLQLAAAVLAQAKLPA 1147 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~--d~~~~~~L~~aGAd~VI~p~~e---aal~La~~iL~~lg~~~ 1147 (1207)
..+...++++||+++|.+... +.++...+- .+.|.||.-... ....+.+..-...++|-
T Consensus 84 e~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll-~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~ 147 (287)
T PRK08223 84 EVLAEMVRDINPELEIRAFPEGIGKENADAFL-DGVDVYVDGLDFFEFDARRLVFAACQQRGIPA 147 (287)
T ss_pred HHHHHHHHHHCCCCEEEEEecccCccCHHHHH-hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCE
Confidence 345567899999999877654 334444443 378999854431 44455555544444443
No 279
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.93 E-value=6.3 Score=45.32 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=35.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHh
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~ 1047 (1207)
+|-|+|.|.+|..++..+...|++|+++|.+++..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 6889999999999999999999999999999998776
No 280
>PLN02712 arogenate dehydrogenase
Probab=83.84 E-value=4.2 Score=52.19 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=61.2
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.+.++.|+|+|.+|+.+++.|.+.|+.++++|++... +.++..|+.. ..+.+ ++-..+||.|+++++.. ..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~---e~~~~~aDvViLavP~~-~~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSF----FLDPH---DLCERHPDVILLCTSII-ST 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHH---HHhhcCCCEEEEcCCHH-HH
Confidence 3457999999999999999999999999999998544 4455556432 22332 22124689999999865 33
Q ss_pred HHHHHHHH--HhCCCceEEEeeCChH
Q 000968 1088 YRTVWALS--KYFPNVKTFVRAHDID 1111 (1207)
Q Consensus 1088 i~i~l~aR--~l~P~i~IIaRa~d~~ 1111 (1207)
..++..+. .+.|+ .+++-+.+..
T Consensus 122 ~~vl~~l~~~~l~~g-~iVvDv~SvK 146 (667)
T PLN02712 122 ENVLKSLPLQRLKRN-TLFVDVLSVK 146 (667)
T ss_pred HHHHHhhhhhcCCCC-eEEEECCCCc
Confidence 33333332 23344 4666665544
No 281
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=83.81 E-value=15 Score=43.97 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHH
Q 000968 611 LASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1207)
Q Consensus 611 l~A~ll~~L~~R-l~~lP~IVGyLLaGILLGP~g--LglI~-~~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~ 686 (1207)
.++..+..+++. -..+|..++.+++|+++-... ++... +.+..+.++++++-+++=.+=+.+.+-.|-..+-+.+.
T Consensus 232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~v 311 (404)
T COG0786 232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLV 311 (404)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 334444444442 226899999999999998531 11111 33456888999888888777778888888777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHH----HhhccccCcHHH
Q 000968 687 LGSAQVLVTAVVVGLVAHFVSGLPGPASIV----IGNGLALSSTAV 728 (1207)
Q Consensus 687 Lg~l~vllt~vlvglll~~llGls~~~ALl----LGailS~TStAV 728 (1207)
+-.+|+++..+...++++.++|-++-.+.+ .|..+.+|.+++
T Consensus 312 iL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAi 357 (404)
T COG0786 312 ILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAI 357 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHH
Confidence 888888877665666666778888877666 344455555543
No 282
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.81 E-value=1.8 Score=47.21 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=53.4
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhcC------ccccCEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~Ag------I~~A~~V 1077 (1207)
.++|.|. |.+|+.+++.|.++|..|++++++++..+...+ .++.++.+|.++++.+.++= ..+.|.+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 87 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVL 87 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4667764 889999999999999999999999876654422 24567889999998765431 1346787
Q ss_pred EEecC
Q 000968 1078 AITLD 1082 (1207)
Q Consensus 1078 Viatd 1082 (1207)
|-...
T Consensus 88 v~~ag 92 (241)
T PRK07454 88 INNAG 92 (241)
T ss_pred EECCC
Confidence 76553
No 283
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.76 E-value=7.6 Score=43.50 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=68.6
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.||+|+|.|-+|..+++.|-..|+ .++++|.|.=....+.. .++. + ....|- ...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnR---q~~~---~----~~diG~-------------~Ka 67 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNR---QIHA---L----LSTVGK-------------PKV 67 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcc---hhCc---C----hhhCCC-------------cHH
Confidence 3589999999999999999999998 79999887533332211 1110 0 011121 122
Q ss_pred HHHHHHHHHhCCCceEEEeeCC--hHHHHHHHhCCCCeeecC--CcHHHHHHHHHHH
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHD--IDHGLNLEKAGATAVVPE--TLEPSLQLAAAVL 1140 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d--~~~~~~L~~aGAd~VI~p--~~eaal~La~~iL 1140 (1207)
..+...++++||++++.+.... +++...+...+.|.||.- +..+-..+.+...
T Consensus 68 e~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~ 124 (231)
T cd00755 68 EVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCR 124 (231)
T ss_pred HHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH
Confidence 3566778899999888766543 455666666679999954 3333333444443
No 284
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=83.57 E-value=7.9 Score=46.95 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=52.3
Q ss_pred ccccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHhh-hhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~~-r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.+++|+|.|.+|+.+++.|...| .+++++++++++.+.+ +..|...+. .+.+.+ .+..+|.||.+++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~-----~~~l~~-~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVK-----FEDLEE-YLAEADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEee-----HHHHHH-HHhhCCEEEECCCCCCc
Confidence 57999999999999999999999 6799999999887644 333433321 123322 24689999999977654
No 285
>PLN02858 fructose-bisphosphate aldolase
Probab=83.54 E-value=5.4 Score=55.25 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=57.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni 1088 (1207)
...+-++|.|.+|..+++.|...|+++++.|+++++++.+...|... ..++..+ ++++|.|+++++++..-.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvVi~~V~~~~~v~ 395 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVLVIMVANEVQAE 395 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEEEEecCChHHHH
Confidence 35688899999999999999999999999999999998887776433 2334322 357899999999876543
Q ss_pred HH
Q 000968 1089 RT 1090 (1207)
Q Consensus 1089 ~i 1090 (1207)
.+
T Consensus 396 ~V 397 (1378)
T PLN02858 396 NV 397 (1378)
T ss_pred HH
Confidence 33
No 286
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.49 E-value=1.1 Score=47.27 Aligned_cols=96 Identities=20% Similarity=0.056 Sum_probs=61.4
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEec------------------CCCHHHHHhcC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGD------------------AGSREVLHKVG 1070 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GD------------------atd~evL~~Ag 1070 (1207)
..+++|.|.|++|+..++.+...|.+++++|.++++.+.....+...+.=+ +..-+-.-.--
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 368999999999999999999999999999999999888777665555443 22233333345
Q ss_pred ccccCEEEEec--CC-cchhHHHHHHHHHhCCCceEEE
Q 000968 1071 AERACAAAITL--DT-PGANYRTVWALSKYFPNVKTFV 1105 (1207)
Q Consensus 1071 I~~A~~VViat--dd-d~~Ni~i~l~aR~l~P~i~IIa 1105 (1207)
+..++.+|.+. .+ ....+.+-..++.+.|. .+|+
T Consensus 100 i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIv 136 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIV 136 (168)
T ss_dssp HHH-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEE
T ss_pred HhhCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEE
Confidence 67788877543 22 12223334455555553 3444
No 287
>PRK06482 short chain dehydrogenase; Provisional
Probab=83.41 E-value=1.8 Score=48.32 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=56.2
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh---CCCCEEEecCCCHHHHHhc------CccccCEEEE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~---~g~~vi~GDatd~evL~~A------gI~~A~~VVi 1079 (1207)
..++|.| .|.+|+.+++.|.+.|..+++++++++..+.++. .++.++.+|.++++.++++ .....+.+|-
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS 82 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3577887 5789999999999999999999999887766543 3577889999999877653 1245677776
Q ss_pred ec
Q 000968 1080 TL 1081 (1207)
Q Consensus 1080 at 1081 (1207)
..
T Consensus 83 ~a 84 (276)
T PRK06482 83 NA 84 (276)
T ss_pred CC
Confidence 54
No 288
>PLN02602 lactate dehydrogenase
Probab=83.41 E-value=9.1 Score=45.50 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=84.1
Q ss_pred ccccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhh----hh----CCCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RA----LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~----r~----~g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
.++.|+|.|.+|..++..|...+. +++++|.+++..+-. .. .+..-+.+.. +. ..+..||.||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~-dy-----~~~~daDiVVi 111 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAST-DY-----AVTAGSDLCIV 111 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCC-CH-----HHhCCCCEEEE
Confidence 489999999999999999987776 599999988754311 11 1112344322 21 23688999999
Q ss_pred ecCCc-----------chhH----HHHHHHHHhCCCceEEEeeCChHHHH---HHHhCC--CCeeecC-CcHHHHHHHHH
Q 000968 1080 TLDTP-----------GANY----RTVWALSKYFPNVKTFVRAHDIDHGL---NLEKAG--ATAVVPE-TLEPSLQLAAA 1138 (1207)
Q Consensus 1080 atddd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~~~~---~L~~aG--Ad~VI~p-~~eaal~La~~ 1138 (1207)
+.+.+ ..|. .++..+++.+|+..+++-+ ++.+.. ..+..| -..||-. +..-+.++-+.
T Consensus 112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt-NPvdv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS-NPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CchHHHHHHHHHHhCCCHHHEEeecchHHHHHHHHH
Confidence 87653 2443 4566778889997655555 544322 224455 4556633 34444456666
Q ss_pred HHHHcCCCHHHHH
Q 000968 1139 VLAQAKLPASEIA 1151 (1207)
Q Consensus 1139 iL~~lg~~~~ei~ 1151 (1207)
+-+.+++++.++.
T Consensus 191 lA~~l~v~~~~V~ 203 (350)
T PLN02602 191 IADHLDVNAQDVQ 203 (350)
T ss_pred HHHHhCCCcccee
Confidence 6666666665443
No 289
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=83.38 E-value=5.5 Score=41.02 Aligned_cols=93 Identities=27% Similarity=0.399 Sum_probs=62.1
Q ss_pred cccccCC-CchHHHHHHHHHhcCC--CeEeecCChHHHHhh----h----hCCCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----R----ALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~----r----~~g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
++.|+|. |.+|..++..|...+. +++++|.+++..+-. . ..+.+...+. .+.+ .+.+||.||+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~-----~~~~aDivvi 75 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYE-----ALKDADIVVI 75 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGG-----GGTTESEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-cccc-----ccccccEEEE
Confidence 5789999 9999999999988765 599999998765421 1 1233444444 3332 4578899999
Q ss_pred ecCCc-----------chhHH----HHHHHHHhCCCceEEEeeCCh
Q 000968 1080 TLDTP-----------GANYR----TVWALSKYFPNVKTFVRAHDI 1110 (1207)
Q Consensus 1080 atddd-----------~~Ni~----i~l~aR~l~P~i~IIaRa~d~ 1110 (1207)
+.+.+ ..|.. ++..+++.+|+..+++- .+|
T Consensus 76 tag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv-tNP 120 (141)
T PF00056_consen 76 TAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV-TNP 120 (141)
T ss_dssp TTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE--SSS
T ss_pred eccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe-CCc
Confidence 88764 34433 44567788898755544 444
No 290
>PRK07574 formate dehydrogenase; Provisional
Probab=83.29 E-value=3.9 Score=49.14 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=58.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.++-|+|+|++|+.+++.|...|.++.+.|+.+...+..+..|.. + ..+ |+++ +.++|.|++.++....+..
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~--~--~~~---l~el-l~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLT--Y--HVS---FDSL-VSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCce--e--cCC---HHHH-hhcCCEEEEcCCCCHHHHH
Confidence 358899999999999999999999999999876333322233321 1 112 2222 3778999999987765544
Q ss_pred H--HHHHHHhCCCceEEE
Q 000968 1090 T--VWALSKYFPNVKTFV 1105 (1207)
Q Consensus 1090 i--~l~aR~l~P~i~IIa 1105 (1207)
+ ...+..+-|...+|-
T Consensus 265 li~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVN 282 (385)
T ss_pred HhCHHHHhcCCCCcEEEE
Confidence 3 234455566655553
No 291
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.23 E-value=5.1 Score=45.02 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=45.1
Q ss_pred cccccCCCchHHHHHHHHHhcCCC---eEeecCChHHHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCC
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIP---FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~---vvVID~D~e~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatdd 1083 (1207)
++-|+|+|.+|+.+++.|.+.+++ +.+.++++++.+.+... +..+ . .+.+-+ ++++|.|++++.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~---~~~~~~----~~~aDvVilav~p 71 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI-A---KDNQAV----VDRSDVVFLAVRP 71 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE-e---CCHHHH----HHhCCEEEEEeCH
Confidence 467999999999999999988754 47888898887766543 2222 2 122211 2357888888874
No 292
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=83.22 E-value=1.1 Score=48.00 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=56.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-----CCCEEEecCCCH------------HHHHhcCccc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSR------------EVLHKVGAER 1073 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-----g~~vi~GDatd~------------evL~~AgI~~ 1073 (1207)
+|-|+|.|.+|+.|+..+...|++|+++|.|++..+..++. ...+-.|..++. .-++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~--~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV--D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC--T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh--h
Confidence 46799999999999999999999999999999876544211 000001111111 1133333 8
Q ss_pred cCEEEEecCCcchhH-HHHHHHHHhCCCceEEEeeCChHHHHHH
Q 000968 1074 ACAAAITLDTPGANY-RTVWALSKYFPNVKTFVRAHDIDHGLNL 1116 (1207)
Q Consensus 1074 A~~VViatddd~~Ni-~i~l~aR~l~P~i~IIaRa~d~~~~~~L 1116 (1207)
||.||=+++.+..-. .+-..+.+..|.--|++.....-....+
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 888888886663332 2333444444433455555444444444
No 293
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=83.19 E-value=2.3 Score=48.90 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=59.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
..++|||||.+|+-.++.|+..|-.|+|-|.||-..-++.-+|+.|.. |+++ +.+++.+|.+|+.. |+.
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~t--------m~ea-~~e~difVTtTGc~--dii 283 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTT--------LEEA-IREVDIFVTTTGCK--DII 283 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeee--------HHHh-hhcCCEEEEccCCc--chh
Confidence 458899999999999999999999999999999887666667777754 4433 57788888888773 444
Q ss_pred HHHHHHHh
Q 000968 1090 TVWALSKY 1097 (1207)
Q Consensus 1090 i~l~aR~l 1097 (1207)
......++
T Consensus 284 ~~~H~~~m 291 (434)
T KOG1370|consen 284 TGEHFDQM 291 (434)
T ss_pred hHHHHHhC
Confidence 44444444
No 294
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.09 E-value=6.8 Score=44.86 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=35.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~ 1048 (1207)
.++.|+|.|.+|..++..|...|++|+++|.+++.++.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAG 43 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 358899999999999999999999999999999987654
No 295
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.09 E-value=1.3e+02 Score=37.72 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000968 217 KEAVHKATMALSLAEARLQVAIESLQDVK 245 (1207)
Q Consensus 217 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1207)
.++++++......++..+..........+
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567777777777777777666666554
No 296
>PRK07024 short chain dehydrogenase; Provisional
Probab=83.02 E-value=1.9 Score=47.79 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=53.7
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh----C-CCCEEEecCCCHHHHHhc------CccccCEE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----L-DLPVYFGDAGSREVLHKV------GAERACAA 1077 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~----~-g~~vi~GDatd~evL~~A------gI~~A~~V 1077 (1207)
.+++|.| .|.+|+.+++.|.+.|..+++++++++..+...+ . .+.++.+|.++++-+.++ .....|.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~l 82 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVV 82 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 3577776 7789999999999999999999999887654432 1 467889999998876543 11235777
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|-..
T Consensus 83 v~~a 86 (257)
T PRK07024 83 IANA 86 (257)
T ss_pred EECC
Confidence 7654
No 297
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=82.99 E-value=2 Score=52.14 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=53.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhh-hhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~-r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.+++|+|.|.+|+.+++.|...|. +++++++++++.+.+ ...|..+ .+.+.+.+ .+.++|.||.+|+.+...
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~-----~~~~~~~~-~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEA-----IPLDELPE-ALAEADIVISSTGAPHPI 256 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcE-----eeHHHHHH-HhccCCEEEECCCCCCcE
Confidence 479999999999999999999997 799999999887644 3434322 22233332 246899999999877544
No 298
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.83 E-value=3.2 Score=48.83 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=55.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
++-|+|+|.+|+.+++.|...|.++++.|++++..... .. + ..+ +.+ -+++||.|+++++....+...
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~--~--~~~---l~e-ll~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LT--Y--KDS---VKE-AIKDADIISLHVPANKESYHL 215 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hh--c--cCC---HHH-HHhcCCEEEEeCCCcHHHHHH
Confidence 58999999999999999999999999999987643211 00 0 112 222 246789999999887644333
Q ss_pred H--HHHHHhCCCceEEE
Q 000968 1091 V--WALSKYFPNVKTFV 1105 (1207)
Q Consensus 1091 ~--l~aR~l~P~i~IIa 1105 (1207)
. .....+.|+..+|-
T Consensus 216 i~~~~l~~mk~gavlIN 232 (330)
T PRK12480 216 FDKAMFDHVKKGAILVN 232 (330)
T ss_pred HhHHHHhcCCCCcEEEE
Confidence 2 33344445554443
No 299
>PRK08264 short chain dehydrogenase; Validated
Probab=82.81 E-value=2.1 Score=46.54 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=55.3
Q ss_pred ccccccC-CCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcC--ccccCEEEEecCC
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--AERACAAAITLDT 1083 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~Ag--I~~A~~VViatdd 1083 (1207)
..++|.| .|.+|+.+++.|.+.|. .|++++++++..+. ...+..++.+|.++++.++++- ....|.+|-...-
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 4577777 59999999999999998 99999999877654 3346788899999988875532 2346777665543
No 300
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=82.79 E-value=16 Score=44.54 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhh--CcchhhhhhhhhhcCCCcchhhHHH
Q 000968 875 GLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAF 948 (1207)
Q Consensus 875 ~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~--g~~~real~lGL~La~rGe~alVLa 948 (1207)
.+++|+.-..-|+++|.+.+..+|..++.+....++.-.+++....++. ++++..++.+|..++|-.-+++...
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i 139 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPI 139 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHH
Confidence 6667766667899999999998887776666555556666666655555 8888899999999888777665433
No 301
>PLN00016 RNA-binding protein; Provisional
Probab=82.76 E-value=3.2 Score=49.20 Aligned_cols=89 Identities=7% Similarity=-0.080 Sum_probs=60.3
Q ss_pred cccccc----C-CCchHHHHHHHHHhcCCCeEeecCChHHHH-----------hhhhCCCCEEEecCCCHHHHHhcCccc
Q 000968 1010 DHIILC----G-FGRVGQIIAQLLSERLIPFVALDVRSDRVA-----------IGRALDLPVYFGDAGSREVLHKVGAER 1073 (1207)
Q Consensus 1010 ~hVIIi----G-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve-----------~~r~~g~~vi~GDatd~evL~~AgI~~ 1073 (1207)
..|+|+ | .|.+|+.+++.|.+.|++|+++++++.... .+...|+.++.||..+.+.+. ....
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~--~~~~ 130 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV--AGAG 130 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh--ccCC
Confidence 458888 5 599999999999999999999999875422 223457899999998833222 2346
Q ss_pred cCEEEEecCCcch-hHHHHHHHHHhCCC
Q 000968 1074 ACAAAITLDTPGA-NYRTVWALSKYFPN 1100 (1207)
Q Consensus 1074 A~~VViatddd~~-Ni~i~l~aR~l~P~ 1100 (1207)
+|.||-+...+.. ...++..+++.+.+
T Consensus 131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvk 158 (378)
T PLN00016 131 FDVVYDNNGKDLDEVEPVADWAKSPGLK 158 (378)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 7887766544322 23344555655543
No 302
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.75 E-value=35 Score=45.78 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000968 666 FNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSG 708 (1207)
Q Consensus 666 F~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llG 708 (1207)
|.-|..+++.--++.|+.+.-|+...=.++.+++-+++|.+=+
T Consensus 1175 FseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkP 1217 (1293)
T KOG0996|consen 1175 FSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKP 1217 (1293)
T ss_pred cccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCC
Confidence 5668888888888888888777666555555555555565433
No 303
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.73 E-value=4.2 Score=45.06 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=59.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.-....+ +-++++.+ ...|-. ..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL---~Rq~l~~~-------~diG~~-------------Ka 77 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL---QRQILHTE-------ADVGQP-------------KA 77 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc---ccccccCh-------hhCCCh-------------HH
Confidence 4589999999999999999999998 688888874332222 11122211 011211 22
Q ss_pred HHHHHHHHHhCCCceEEEeeCCh--HHHHHHHhCCCCeeec
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAGATAVVP 1126 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d~--~~~~~L~~aGAd~VI~ 1126 (1207)
..+...++++||++++-+...+. ++...+- .++|.||.
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~-~~~DvVi~ 117 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERLDAENAEELI-AGYDLVLD 117 (228)
T ss_pred HHHHHHHHHhCCCCEEEEecceeCHHHHHHHH-hCCCEEEE
Confidence 35667889999998887766543 3332222 36888883
No 304
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=82.69 E-value=3.6 Score=36.71 Aligned_cols=52 Identities=37% Similarity=0.441 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-hhH---HHHHHHHHHHHHHHH--HHHHHhhh
Q 000968 295 QSKKEELQKEVDRLNEVAEKAQMNAL-KAE---EDVANIMLLAEQAVA--FEIEATQR 346 (1207)
Q Consensus 295 ~~~~~~~q~~~~~~~~~~~~~~~~a~-~a~---~~~~~~m~~ae~av~--~e~e~~~~ 346 (1207)
-+..+|+||+|.|||-.|..|.|+-- .|| -+-..||-.||.+.+ .||.+++|
T Consensus 5 ms~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ 62 (71)
T COG5420 5 MSSLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKR 62 (71)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999853 344 356889999998754 46666554
No 305
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.65 E-value=7.8 Score=42.72 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=56.8
Q ss_pred cccccccCCCchHHHHHHHHHhcCCC-eEeecCCh------------------HHHHhh----hh--CC--CCEEEecCC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRS------------------DRVAIG----RA--LD--LPVYFGDAG 1061 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~------------------e~ve~~----r~--~g--~~vi~GDat 1061 (1207)
..+|+|+|.|-+|..+++.|...|+. ++++|.|. .+++.+ ++ .+ +..+....+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~ 107 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKID 107 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecC
Confidence 45899999999999999999999997 99999992 122211 11 12 223333333
Q ss_pred CHHHHHhcCccccCEEEEecCCcchhHHHHHHHHHh
Q 000968 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKY 1097 (1207)
Q Consensus 1062 d~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR~l 1097 (1207)
++ .+.+ -++++|.||.++|+...-..+...+++.
T Consensus 108 ~~-~~~~-~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 108 ED-NIEE-LFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred HH-HHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 32 2221 2467889888888876655555556665
No 306
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.61 E-value=7.6 Score=44.34 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=51.7
Q ss_pred cccccCCCchHHHHHHHHHhcC----CCeEeecCCh-HHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERL----IPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~g----i~vvVID~D~-e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
++.|+|+|.+|..+++.|.+.+ .+++++++++ ++.+........+.. ..+.. ++ +.++|.||++++...
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~--~~~~~---e~-~~~aDvVilavpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL--ADNEA---EI-FTKCDHSFICVPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE--eCCHH---HH-HhhCCEEEEecCHHH
Confidence 4778999999999999999887 5788888864 444444332111111 11221 11 357899999988542
Q ss_pred hhHHHHHHHHHh-CCCceEEE
Q 000968 1086 ANYRTVWALSKY-FPNVKTFV 1105 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l-~P~i~IIa 1105 (1207)
...++..++.. .++..++.
T Consensus 77 -~~~vl~~l~~~l~~~~~ivS 96 (277)
T PRK06928 77 -VLPLLKDCAPVLTPDRHVVS 96 (277)
T ss_pred -HHHHHHHHHhhcCCCCEEEE
Confidence 33344444333 23433443
No 307
>PTZ00325 malate dehydrogenase; Provisional
Probab=82.53 E-value=12 Score=43.98 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=61.9
Q ss_pred ccccccCC-CchHHHHHHHHHhcC--CCeEeecCChHHHH--hhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERL--IPFVALDVRSDRVA--IGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve--~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.++.|+|. |.+|..++..|...+ ..++++|.+...-+ .+......+...+.+++..+ ...+..+|+||++...+
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~-~~~l~gaDvVVitaG~~ 87 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELW-EKALRGADLVLICAGVP 87 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCch-HHHhCCCCEEEECCCCC
Confidence 47999999 999999999998555 47899998432211 11111223344454453332 23567899999988774
Q ss_pred c-----------hhH----HHHHHHHHhCCCceEEEeeCCh
Q 000968 1085 G-----------ANY----RTVWALSKYFPNVKTFVRAHDI 1110 (1207)
Q Consensus 1085 ~-----------~Ni----~i~l~aR~l~P~i~IIaRa~d~ 1110 (1207)
. .|. .++..+++.+|+. ++.-+.++
T Consensus 88 ~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~-iviv~SNP 127 (321)
T PTZ00325 88 RKPGMTRDDLFNTNAPIVRDLVAAVASSAPKA-IVGIVSNP 127 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCc
Confidence 2 332 3445778889985 44444444
No 308
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.37 E-value=60 Score=35.76 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHH
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAW 196 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~ 196 (1207)
+.++.+.|.++++.+..+..+..++|.+..+.-+.+--+++.|..|-
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888899999999999999999888888888877777776664
No 309
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=82.27 E-value=4.6 Score=45.47 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=49.8
Q ss_pred ccccCC-CchHHHHHHHHHhcC--CCeEeecCCh-----HHHHhhh-hCCCCEEEecCCCHHHHHhcCccc--cCEEEEe
Q 000968 1012 IILCGF-GRVGQIIAQLLSERL--IPFVALDVRS-----DRVAIGR-ALDLPVYFGDAGSREVLHKVGAER--ACAAAIT 1080 (1207)
Q Consensus 1012 VIIiG~-GrvG~~Ia~~L~~~g--i~vvVID~D~-----e~ve~~r-~~g~~vi~GDatd~evL~~AgI~~--A~~VVia 1080 (1207)
++|.|. |.+|+.+++.|.+.+ ..+++++... +..+... ..++.++.||.++++.+.++ ++. +|.||-+
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~vi~~ 80 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-FTEHQPDAVVHF 80 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-HhhcCCCEEEEc
Confidence 567775 899999999998876 6788887532 1222221 22577889999999988766 333 7888876
Q ss_pred cC
Q 000968 1081 LD 1082 (1207)
Q Consensus 1081 td 1082 (1207)
..
T Consensus 81 a~ 82 (317)
T TIGR01181 81 AA 82 (317)
T ss_pred cc
Confidence 64
No 310
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.26 E-value=3 Score=49.02 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=61.6
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEE-Ee-cCC------CHHHHHhcCccccCEEEEe
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVY-FG-DAG------SREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi-~G-Dat------d~evL~~AgI~~A~~VVia 1080 (1207)
.-++.|+|.|.+|..++..|.+.| +++++..+++.++..++.+.+.- .+ +-. -..-+.. .++.+|.|+++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a~~~aDlVila 84 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-AANCADVVVMG 84 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-HHhcCCEEEEE
Confidence 346999999999999999999998 78888899999887765442211 11 100 0011222 25688999999
Q ss_pred cCCcchhHHHHHHHHH-hCCCceEEEeeCCh
Q 000968 1081 LDTPGANYRTVWALSK-YFPNVKTFVRAHDI 1110 (1207)
Q Consensus 1081 tddd~~Ni~i~l~aR~-l~P~i~IIaRa~d~ 1110 (1207)
++... ...++..++. ..|+..++.-++--
T Consensus 85 vps~~-~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 85 VPSHG-FRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred eCHHH-HHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 98642 2233333433 34554555555533
No 311
>PLN02686 cinnamoyl-CoA reductase
Probab=82.13 E-value=2.2 Score=50.42 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=50.3
Q ss_pred cccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----------CCCCEEEecCCCHHHHHhcCccccCE
Q 000968 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----------LDLPVYFGDAGSREVLHKVGAERACA 1076 (1207)
Q Consensus 1009 k~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----------~g~~vi~GDatd~evL~~AgI~~A~~ 1076 (1207)
...++|.|. |-+|+.+++.|.+.|+.|+++..+.+..+.++. .++.++.||.+|++.+.++ ++.++.
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-i~~~d~ 131 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA-FDGCAG 131 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH-HHhccE
Confidence 345777775 899999999999999999887777655433321 2467889999999987654 344555
Q ss_pred EE
Q 000968 1077 AA 1078 (1207)
Q Consensus 1077 VV 1078 (1207)
++
T Consensus 132 V~ 133 (367)
T PLN02686 132 VF 133 (367)
T ss_pred EE
Confidence 54
No 312
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=82.13 E-value=0.35 Score=56.97 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcccchh--HHHHHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHH
Q 000968 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFS--LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLI 909 (1207)
Q Consensus 832 ~Lg~a~Lae~lGLS~~LGAFvAGLvLsn~~~~--~~l~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illllllll 909 (1207)
++....+...++++..+|-.++|++++...+. +.-....+.+.++.++++....|.++|++.+...+...+......+
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~ 87 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGF 87 (380)
T ss_dssp ----------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccee
Confidence 33334468889999999999999999987544 1112445556778888888889999999998877654433333333
Q ss_pred HHHHHH-HHHHHH---hhCcchhhhhhhhhhcCCCcc
Q 000968 910 GGKTIL-VALVGR---LFGVSVISAIRTGLLLAPGGE 942 (1207)
Q Consensus 910 l~K~l~-v~l~~~---l~g~~~real~lGL~La~rGe 942 (1207)
+.-++. .+.... ..++++.+++.+|..+++-..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 88 LLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp --------------------------TTHHHHTT--H
T ss_pred eehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 333333 333332 478899999999988765543
No 313
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.12 E-value=2.6 Score=50.26 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=30.7
Q ss_pred cccccccC-CCchHHHHHHHHHhcCCCeEeecCCh
Q 000968 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRS 1042 (1207)
Q Consensus 1009 k~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~ 1042 (1207)
..++.|+| .|.+|..+++.|...|++++++|.++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 35789998 99999999999999999999999863
No 314
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=82.08 E-value=2 Score=50.00 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=51.6
Q ss_pred cccccCC-CchHHHHHHHHHhc-CCCeEeecCChHHHHhh-hhCCCCEEEecCC-CHHHHHhcCccccCEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSER-LIPFVALDVRSDRVAIG-RALDLPVYFGDAG-SREVLHKVGAERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~-gi~vvVID~D~e~ve~~-r~~g~~vi~GDat-d~evL~~AgI~~A~~VV 1078 (1207)
+++|.|. |-+|+.+++.|.+. ++.|+.++++++..... ...+++++.||.. +.+.+.++ +.++|.||
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~Vi 73 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVIL 73 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEEE
Confidence 4889997 99999999999876 69999999877654433 3346889999998 66656543 45688877
No 315
>PRK07074 short chain dehydrogenase; Provisional
Probab=82.01 E-value=2.9 Score=46.01 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=54.5
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh----hCCCCEEEecCCCHHHHHhcCc------cccCEEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----ALDLPVYFGDAGSREVLHKVGA------ERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~~g~~vi~GDatd~evL~~AgI------~~A~~VVi 1079 (1207)
.++|.|. |.+|+.+++.|.+.|..+++++++++..+... ...+.++.+|..+++.+.++=- .+.|.+|.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~ 83 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVA 83 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3666665 89999999999999999999999988765443 2346788999999998754322 24688777
Q ss_pred ecC
Q 000968 1080 TLD 1082 (1207)
Q Consensus 1080 atd 1082 (1207)
...
T Consensus 84 ~ag 86 (257)
T PRK07074 84 NAG 86 (257)
T ss_pred CCC
Confidence 664
No 316
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.00 E-value=2.4 Score=48.63 Aligned_cols=72 Identities=15% Similarity=0.046 Sum_probs=53.0
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhh---hh-----CCCCEEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG---RA-----LDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~---r~-----~g~~vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
..++|.|. |-+|+.+++.|.+.|+.++++.+|++..+.. .. ..+.++.||.++++.++++ +++.|.||-+
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vih~ 84 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDGCETVFHT 84 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcCCCEEEEe
Confidence 46777774 8999999999999999998887776543221 11 2467889999999988765 4567887766
Q ss_pred cC
Q 000968 1081 LD 1082 (1207)
Q Consensus 1081 td 1082 (1207)
..
T Consensus 85 A~ 86 (325)
T PLN02989 85 AS 86 (325)
T ss_pred CC
Confidence 53
No 317
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=81.96 E-value=7.9 Score=43.50 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=66.5
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
..+|+|+|.|-+|..+++.|...|+ .++++|.|.-....+ +-.+++.+ ...|-. ..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL---~RQ~l~~~-------~diG~~-------------Ka 80 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL---QRQVLHSD-------ANIGQP-------------KV 80 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc---ccceeeeH-------hhCCCc-------------HH
Confidence 3589999999999999999999997 577887764443322 21222211 011111 22
Q ss_pred HHHHHHHHHhCCCceEEEeeCCh--HHHHHHHhCCCCeeecCC-cHHHHHHHHHHHHHcCCC
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d~--~~~~~L~~aGAd~VI~p~-~eaal~La~~iL~~lg~~ 1146 (1207)
..+...++++||++++.+..... ++...+- .++|.||.-. ...+....+......++|
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~-~~~DlVvd~~D~~~~r~~ln~~~~~~~ip 141 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDDAELAALI-AEHDIVVDCTDNVEVRNQLNRQCFAAKVP 141 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh-hcCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 34567788999999887765443 2333222 3688888332 223333344444444443
No 318
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.93 E-value=99 Score=35.16 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHhhhHHHHHHHHHhhHHHH
Q 000968 272 AAENDIKECQANLANCETEL 291 (1207)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l 291 (1207)
.|..|.++|+..|......+
T Consensus 150 ~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 150 NAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 319
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=81.91 E-value=8.6 Score=50.26 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH--HHHHH
Q 000968 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQV 732 (1207)
Q Consensus 655 ~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStA--VVl~I 732 (1207)
...++.+++.....|++.|+..+.+ +...... +..+.+.-++.++...++.++|+..++.+|.+++.=... ++...
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~-i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRT-ILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 3346777788889999999999988 2222222 222222233344444557899999999999988755443 44455
Q ss_pred HHhcCCCCCh
Q 000968 733 LQERGESTSR 742 (1207)
Q Consensus 733 L~elg~l~s~ 742 (1207)
-.+.+..+.+
T Consensus 388 ~~~~~~~~~~ 397 (769)
T KOG1650|consen 388 GLDRKILSDE 397 (769)
T ss_pred HhhcCCcccc
Confidence 5566554443
No 320
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.87 E-value=83 Score=39.53 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=42.2
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000968 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1207)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~ 316 (1207)
.-...+.++..|..+.+.+|.+..+|+..++...+.|+.|+.+...--.+.+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446689999999999999999999999999999999988877655444433
No 321
>PF13514 AAA_27: AAA domain
Probab=81.79 E-value=97 Score=42.50 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000968 158 MNAMKELEVAQLNSTMFEEKAQRISEA 184 (1207)
Q Consensus 158 ~~a~~~~e~a~~~~~~~e~~~~~~~~~ 184 (1207)
++..++++..+-.-..|+++++.+.+.
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777888899998888764
No 322
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=81.71 E-value=1.9 Score=49.15 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=52.7
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHH---Hhhh-----hCCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRV---AIGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~v---e~~r-----~~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
.++|.| .|-+|+.+++.|.+.|++|++++++++.. .... ..++.++.||.++++.+.++ ++++|+||-+.
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~A 84 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGCEGVFHTA 84 (322)
T ss_pred EEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCCCEEEEeC
Confidence 578888 59999999999999999999888776532 1111 12567899999999888765 34678777655
No 323
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.71 E-value=2.2 Score=47.44 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=53.4
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh---CCCCEEEecCCCHHHHHhcC------ccccCEEEE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~---~g~~vi~GDatd~evL~~Ag------I~~A~~VVi 1079 (1207)
..++|.|. |.+|+.+++.|.+.|..|++++++++..+.... ....++.+|.++++.++++= ..+.|.+|-
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~ 86 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILVN 86 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 35677775 889999999999999999999999876654432 23678899999998775431 124577765
Q ss_pred ec
Q 000968 1080 TL 1081 (1207)
Q Consensus 1080 at 1081 (1207)
..
T Consensus 87 ~a 88 (261)
T PRK08265 87 LA 88 (261)
T ss_pred CC
Confidence 43
No 324
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=81.66 E-value=6.5 Score=38.79 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=47.6
Q ss_pred HHHHhcCccccCEEEEecCCc---chhHHHHHHHHHhCC-CceEEEeeCChH-HHHHHHhCCCCeeecCCcHH
Q 000968 1064 EVLHKVGAERACAAAITLDTP---GANYRTVWALSKYFP-NVKTFVRAHDID-HGLNLEKAGATAVVPETLEP 1131 (1207)
Q Consensus 1064 evL~~AgI~~A~~VViatddd---~~Ni~i~l~aR~l~P-~i~IIaRa~d~~-~~~~L~~aGAd~VI~p~~ea 1131 (1207)
++.+.+.-.+++.|.++..+. .....++..+|+.+| +++|++=-.-.. ..+.+++.|+|.++.+..++
T Consensus 41 ~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~~~ 113 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPATEA 113 (119)
T ss_pred HHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHHHH
Confidence 556667777888888876533 233567778888888 887766544333 34689999999999876533
No 325
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.63 E-value=2.2 Score=47.38 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=55.5
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-----CCCEEEecCCCHHHHHhcC-----ccccCEEE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSREVLHKVG-----AERACAAA 1078 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-----g~~vi~GDatd~evL~~Ag-----I~~A~~VV 1078 (1207)
..++|.| .|.+|+.+++.|.+.|..|++++++++..+..... ...++.+|.+|++-++++- ....|.+|
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 3577777 58899999999999999999999998876655322 5678889999998665431 24568887
Q ss_pred EecC
Q 000968 1079 ITLD 1082 (1207)
Q Consensus 1079 iatd 1082 (1207)
....
T Consensus 86 ~~ag 89 (263)
T PRK09072 86 NNAG 89 (263)
T ss_pred ECCC
Confidence 7654
No 326
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.62 E-value=7.4 Score=42.40 Aligned_cols=98 Identities=20% Similarity=0.148 Sum_probs=61.6
Q ss_pred cccccccCCCchHHHHHHHHHhcCCC-eEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.||+|+|.|-+|.++++.|...|+. ++++|.|.-....+ +-.+++.. .+ ...|-.+|
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl---~rq~~~~~-~~----~~iG~~Ka------------- 77 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL---GSNFFLDA-EV----SNSGMNRA------------- 77 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcC---cccEeccc-ch----hhcCchHH-------------
Confidence 46899999999999999999999996 89999874332222 22233322 00 11122222
Q ss_pred HHHHHHHHHhCCCceEEEeeCChH----HHHHHHhCCCCeeecCC
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHDID----HGLNLEKAGATAVVPET 1128 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d~~----~~~~L~~aGAd~VI~p~ 1128 (1207)
..+...++++||++++.+...+.. ....+- ...|.||...
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~-~~~dvVi~~~ 121 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYL-QKFTLVIATE 121 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHH-hCCCEEEECC
Confidence 345677899999999887765432 222221 2578887443
No 327
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=81.45 E-value=5.5 Score=45.39 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=73.3
Q ss_pred cccccC-CCchHHHHHHHHHh-cCCCeE-eec-CChHHHH-hhhh------CCCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSE-RLIPFV-ALD-VRSDRVA-IGRA------LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~-~gi~vv-VID-~D~e~ve-~~r~------~g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
++.|+| +|++|+.+++.+.. .+..++ ++| .+++... .... .|+++ + .+.+.+ ...+|.+|.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~-~---~d~~~l----~~~~DvVId 74 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV-T---DDLEAV----ETDPDVLID 74 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCcee-e---CCHHHh----cCCCCEEEE
Confidence 588999 79999999999976 455544 466 3343321 1111 12221 1 233333 256899888
Q ss_pred ecCCcchhHHHHHHHHHhCCCceEEEe--eCChHHHHHHH----hCCCCeeecCCcHHHHHHHHHHHHH
Q 000968 1080 TLDTPGANYRTVWALSKYFPNVKTFVR--AHDIDHGLNLE----KAGATAVVPETLEPSLQLAAAVLAQ 1142 (1207)
Q Consensus 1080 atddd~~Ni~i~l~aR~l~P~i~IIaR--a~d~~~~~~L~----~aGAd~VI~p~~eaal~La~~iL~~ 1142 (1207)
+++. ..-...+..+.+.+- ++++- ..+.++.+.+. +.|+-.++.+++-.+..+...+++.
T Consensus 75 fT~p-~~~~~~~~~al~~g~--~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~ 140 (266)
T TIGR00036 75 FTTP-EGVLNHLKFALEHGV--RLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEK 140 (266)
T ss_pred CCCh-HHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHH
Confidence 8844 344455555555543 45543 35666666664 4467788889998888887777753
No 328
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=81.42 E-value=20 Score=43.64 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=54.5
Q ss_pred cccccccCCCchHHHHHHHHHhc---CCCe-EeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSER---LIPF-VALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~---gi~v-vVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
..+++|+|.|..|..+++.|... ++.+ =++|.|+..... ..|.+++ |+..+ ..+-+.-.+++.|+++.+..
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~--~~gvpVl-g~~~d--l~~~i~~~~vd~ViIA~p~~ 202 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTG--VRGVPVL-GKLDD--LEELIREGEVDEVYIALPLA 202 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCccccc--cCCCCcc-CCHHH--HHHHHHhcCCCEEEEeeCcc
Confidence 45799999999999999999764 3433 446766554321 1566654 44333 22223335678888888765
Q ss_pred chh--HHHHHHHHHhCCCceEE
Q 000968 1085 GAN--YRTVWALSKYFPNVKTF 1104 (1207)
Q Consensus 1085 ~~N--i~i~l~aR~l~P~i~II 1104 (1207)
... ..++..+++.+-+++++
T Consensus 203 ~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 203 AEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred cHHHHHHHHHHHHhcCCEEEEe
Confidence 332 34455555555444443
No 329
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=81.31 E-value=2.2 Score=52.26 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=56.4
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCChH---------------------HHHhhhhCCCCEEEecCCCHH-H
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e---------------------~ve~~r~~g~~vi~GDatd~e-v 1065 (1207)
...+++|+|.|..|...+..|...|.+++++|.++. ..+.+++.|+.+..+-....+ .
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 346799999999999999999999999999998752 345667788887765432211 1
Q ss_pred HHhcCccccCEEEEecCCcc
Q 000968 1066 LHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1066 L~~AgI~~A~~VViatddd~ 1085 (1207)
+... ..++|.||++++...
T Consensus 220 ~~~~-~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 220 LDDL-LEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHH-HhcCCEEEEEeCCCC
Confidence 2221 136899999997653
No 330
>PRK10698 phage shock protein PspA; Provisional
Probab=81.31 E-value=72 Score=35.63 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000968 151 DELRELLMNAMKELEVAQLNSTMFEEKAQR 180 (1207)
Q Consensus 151 ~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~ 180 (1207)
.++++-|.+++..+..+......+|.+..+
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~ 63 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQ 63 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444444444444333
No 331
>PRK06924 short chain dehydrogenase; Provisional
Probab=81.26 E-value=2.5 Score=46.27 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=45.6
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCCh-HHHHhhhh---CCCCEEEecCCCHHHHHh
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRA---LDLPVYFGDAGSREVLHK 1068 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~-e~ve~~r~---~g~~vi~GDatd~evL~~ 1068 (1207)
+++|.| .|.+|+.+++.|.++|..++++++++ +..+...+ .++.++.+|.++++.+++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 567777 58899999999999999999999886 44443322 356788999999988754
No 332
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=81.06 E-value=2.4 Score=46.60 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=53.5
Q ss_pred ccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh---CCCCEEEecCCCHHHHHhc------CccccCEEEEec
Q 000968 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAITL 1081 (1207)
Q Consensus 1012 VIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~---~g~~vi~GDatd~evL~~A------gI~~A~~VViat 1081 (1207)
++|.| .|.+|..+++.|.+.|..+++++++++..+.... .+..++.+|.++++.++++ .....+.+|...
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 56666 5889999999999999999999999887765532 2466789999999887653 123577877654
No 333
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=81.01 E-value=4.2 Score=47.70 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=56.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCC-CEEEecCCCHHHHH-----hcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDL-PVYFGDAGSREVLH-----KVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~-~vi~GDatd~evL~-----~AgI~~A~~VViatddd 1084 (1207)
++-|+|.|.+|..++..|.+.|++|++.-+|++.++....... +-|.++..-|+.|+ +.-++.||.++++++..
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~ 82 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQ 82 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECChH
Confidence 5789999999999999999999999999999999988865432 33555555555431 11235588988888774
No 334
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.97 E-value=2.6 Score=46.61 Aligned_cols=72 Identities=17% Similarity=0.055 Sum_probs=55.0
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh----CCCCEEEecCCCHHHHHhc--C-----ccccCEEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKV--G-----AERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~----~g~~vi~GDatd~evL~~A--g-----I~~A~~VV 1078 (1207)
+++|.| -|.+|+.+++.|.+.|..+++++++++..+.+.. ..+.++.+|.++++.++++ + ..+.|.+|
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 467776 5779999999999999999999999987765533 2478889999998877653 1 13457777
Q ss_pred EecC
Q 000968 1079 ITLD 1082 (1207)
Q Consensus 1079 iatd 1082 (1207)
.+..
T Consensus 83 ~~ag 86 (260)
T PRK08267 83 NNAG 86 (260)
T ss_pred ECCC
Confidence 6553
No 335
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=80.85 E-value=1.3 Score=52.44 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=42.7
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI 1071 (1207)
-.|+|+|.|..|..+|-.|.+.|++|+++|.++.........+...+.-.+...++|++.|+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl 68 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGV 68 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCc
Confidence 35899999999999999999999999999997642111111122333344455566766665
No 336
>PRK06179 short chain dehydrogenase; Provisional
Probab=80.77 E-value=2.1 Score=47.54 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=53.9
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcC------ccccCEEEEecC
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITLD 1082 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~Ag------I~~A~~VViatd 1082 (1207)
.++|.| .|.+|+.+++.|.++|..|++++++++..+. ..++.++.+|.+|++.++++= ....|.+|....
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag 82 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP--IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAG 82 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 466666 5789999999999999999999999776543 346889999999998876642 124577776654
No 337
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=80.75 E-value=3.4 Score=48.25 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=57.8
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
..+.|+|+|.+|+.+++.|...|.++.++|..++... +...+.+ .+.|++ -+.++|.|+++.+....+..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-----~~~~~~~----~~~l~e-~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-----GVQSFAG----REELSA-FLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-----Cceeecc----cccHHH-HHhcCCEEEECCCCCHHHHH
Confidence 4688999999999999999999999999987654321 2222221 112222 23678999999988776654
Q ss_pred HH--HHHHHhCCCceEEEe
Q 000968 1090 TV--WALSKYFPNVKTFVR 1106 (1207)
Q Consensus 1090 i~--l~aR~l~P~i~IIaR 1106 (1207)
+. .....+.|+..+|-.
T Consensus 207 li~~~~l~~mk~ga~lIN~ 225 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNL 225 (312)
T ss_pred HhHHHHHhcCCCCcEEEEC
Confidence 43 345556666544433
No 338
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=80.67 E-value=4.3 Score=47.76 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=48.6
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHH-HHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~-ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
.+-|+|+|.+|+.+++.|.+.|.++++.+.++.+ .+.++..|+.+. +..+. +++||.|++++++...
T Consensus 19 tIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s~~ea-----a~~ADVVvLaVPd~~~ 86 (330)
T PRK05479 19 KVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL----TVAEA-----AKWADVIMILLPDEVQ 86 (330)
T ss_pred EEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC----CHHHH-----HhcCCEEEEcCCHHHH
Confidence 4789999999999999999999999887776443 344455565431 11222 4668999999987644
No 339
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=80.65 E-value=16 Score=40.34 Aligned_cols=66 Identities=18% Similarity=0.030 Sum_probs=55.6
Q ss_pred cCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1015 CGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1015 iG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
=|-|.+|+.+++.|.+.|++|+++-++++...... .++.+..||-.++..|..+--.....+++..
T Consensus 7 GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 7 GATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred ecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 36899999999999999999999999999998888 8999999999999999977544433333333
No 340
>PLN02928 oxidoreductase family protein
Probab=80.44 E-value=2.2 Score=50.41 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=56.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----hCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
..+.|+|+|++|+.+++.|...|.+|++.|+......... ......+.........|+++ +.+||.|++.++...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~el-l~~aDiVvl~lPlt~ 238 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEF-AGEADIVVLCCTLTK 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHH-HhhCCEEEECCCCCh
Confidence 4577999999999999999999999999998643211110 00001111000012223322 356899999887654
Q ss_pred hhH--HHHHHHHHhCCCceEEEe
Q 000968 1086 ANY--RTVWALSKYFPNVKTFVR 1106 (1207)
Q Consensus 1086 ~Ni--~i~l~aR~l~P~i~IIaR 1106 (1207)
.+. .-......+-|+..+|-.
T Consensus 239 ~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 239 ETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred HhhcccCHHHHhcCCCCeEEEEC
Confidence 443 333455566676555443
No 341
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=80.44 E-value=1.3e+02 Score=35.40 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=65.3
Q ss_pred HhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHh
Q 000968 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1207)
Q Consensus 874 ~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~ 953 (1207)
..+++-.||+.++..-|++.+.. .|..++..+.+.+...+..+..+++++++..+-....+ -+..|-.+.-..+.+.+
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~t-aP~~i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~n 352 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVT-APLIILFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAKN 352 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhcC
Confidence 45667788999999999998876 44444444555666778888889999998877444443 35666666555555554
Q ss_pred hccchhhhHHHHHHHHHHHHHhHHHHHh
Q 000968 954 QGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1207)
Q Consensus 954 ~glIs~el~siLvlvvvlS~lItPlL~~ 981 (1207)
+++....+++.++.-+++.++-.
T Consensus 353 -----r~lv~~gvlmg~lG~~iGn~fG~ 375 (384)
T COG5505 353 -----RELVAPGVLMGTLGYLIGNYFGT 375 (384)
T ss_pred -----chhcchHHHHHHHHHHHHhHHHH
Confidence 34444455555555555555443
No 342
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.43 E-value=3.3 Score=50.57 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=53.8
Q ss_pred ccccccCCCchHHH-HHHHHHhcCCCeEeecCChH-HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQI-IAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~-Ia~~L~~~gi~vvVID~D~e-~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.++.|+|.|..|.. +++.|.+.|+.|++.|.++. ..+.+++.|+.++.|. +++.+ +.+|.||+.-.-+..|
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~vv~spgi~~~~ 80 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADVVVYSSAIPDDN 80 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCEEEECCCCCCCC
Confidence 46999999999999 79999999999999998643 3445667788887654 44433 4678887766555444
Q ss_pred H
Q 000968 1088 Y 1088 (1207)
Q Consensus 1088 i 1088 (1207)
-
T Consensus 81 ~ 81 (461)
T PRK00421 81 P 81 (461)
T ss_pred H
Confidence 3
No 343
>PRK06180 short chain dehydrogenase; Provisional
Probab=80.42 E-value=2.7 Score=47.16 Aligned_cols=72 Identities=14% Similarity=-0.028 Sum_probs=54.3
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC---CCCEEEecCCCHHHHHhcC------ccccCEEEEe
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVG------AERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~---g~~vi~GDatd~evL~~Ag------I~~A~~VVia 1080 (1207)
.++|.|. |.+|+.+++.|.+.|..+++++++++..+.+... .+.++.+|.+|++.+.++= ..+.+.+|-+
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ 85 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNN 85 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 4677775 7899999999999999999999999887665432 4667889999998875431 1245676655
Q ss_pred cC
Q 000968 1081 LD 1082 (1207)
Q Consensus 1081 td 1082 (1207)
..
T Consensus 86 ag 87 (277)
T PRK06180 86 AG 87 (277)
T ss_pred CC
Confidence 43
No 344
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.37 E-value=66 Score=36.12 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHH
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH 221 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~ 221 (1207)
+.+.++-|++|+..+..+..+-.-||.+..+..+.+=-++..|..|-..=| |-.|++|+.
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~------------E~LAr~al~ 92 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN------------EDLAREALE 92 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHH
Confidence 566777888888888888888888888888887777766666666655444 555666555
No 345
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=80.34 E-value=3.4 Score=50.28 Aligned_cols=70 Identities=27% Similarity=0.411 Sum_probs=53.0
Q ss_pred cccccCCCchHHH-HHHHHHhcCCCeEeecCChH-HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1011 HIILCGFGRVGQI-IAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1011 hVIIiG~GrvG~~-Ia~~L~~~gi~vvVID~D~e-~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
|+.++|.|..|.. +++.|.+.|+.|++.|.++. ..+.+++.|+.++.| .+++.+ +.++.||..-.-+..|
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~~-----~~~d~vV~spgi~~~~ 72 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIG--HSAENL-----DDADVVVVSAAIKDDN 72 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCC--CCHHHC-----CCCCEEEECCCCCCCC
Confidence 5678999999998 99999999999999997643 445566778888877 555444 4578887765555444
No 346
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.31 E-value=9.1 Score=42.34 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=57.8
Q ss_pred cccccCCCchHHHHHHHHHhcCC---C-eEeecC-ChHHHHhhhh-CCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI---P-FVALDV-RSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi---~-vvVID~-D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
++.|+|.|.+|..++..|.+.+. . +++.++ ++++.+.+.. .+..+ +.| ..+. ++++|.|+++++++
T Consensus 6 kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-----~~~~DiViiavp~~ 77 (245)
T PRK07634 6 RILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-TTD--WKQH-----VTSVDTIVLAMPPS 77 (245)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-eCC--hHHH-----HhcCCEEEEecCHH
Confidence 58899999999999999987763 3 556665 5677766654 35432 211 1222 35789999999886
Q ss_pred chhHHHHHHHHHhCCCceEEEeeCChHHHHHHH
Q 000968 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLE 1117 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~ 1117 (1207)
.. ..++..++...++ ++|+.+----..+.|+
T Consensus 78 ~~-~~v~~~l~~~~~~-~~vis~~~gi~~~~l~ 108 (245)
T PRK07634 78 AH-EELLAELSPLLSN-QLVVTVAAGIGPSYLE 108 (245)
T ss_pred HH-HHHHHHHHhhccC-CEEEEECCCCCHHHHH
Confidence 43 2333334433333 4555554333333343
No 347
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=80.28 E-value=23 Score=40.83 Aligned_cols=129 Identities=21% Similarity=0.217 Sum_probs=72.8
Q ss_pred ccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHh----hhh----CCCC-EEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1012 IILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAI----GRA----LDLP-VYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~----~r~----~g~~-vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
+.|+|.|.+|..++..|...+. +++++|.|+++.+. ... .+.. -+... +| +. .+..||.||++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t-~d---~~--~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGT-ND---YE--DIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEc-CC---HH--HhCCCCEEEEec
Confidence 4689999999999999988776 99999999875421 111 1111 12211 12 22 258999999987
Q ss_pred CCc-----------chhH----HHHHHHHHhCCCceEEEeeCChHH--HHHH-HhCCCC--eeecCC-cHHHHHHHHHHH
Q 000968 1082 DTP-----------GANY----RTVWALSKYFPNVKTFVRAHDIDH--GLNL-EKAGAT--AVVPET-LEPSLQLAAAVL 1140 (1207)
Q Consensus 1082 ddd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~~--~~~L-~~aGAd--~VI~p~-~eaal~La~~iL 1140 (1207)
..+ ..|. .++..+++..|+..+++-+ ++.+ ...+ +..|-+ .|+--. ..-+.++-..+-
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s-NP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la 153 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT-NPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIA 153 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHH
Confidence 533 2343 3455667788875544444 4432 2222 233433 566332 333334444444
Q ss_pred HHcCCCH
Q 000968 1141 AQAKLPA 1147 (1207)
Q Consensus 1141 ~~lg~~~ 1147 (1207)
+.+++++
T Consensus 154 ~~l~v~~ 160 (300)
T cd01339 154 EELGVSV 160 (300)
T ss_pred HHhCCCc
Confidence 4454443
No 348
>PRK06940 short chain dehydrogenase; Provisional
Probab=80.26 E-value=2.4 Score=47.81 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=53.1
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh----hhCC--CCEEEecCCCHHHHHhcC-----ccccCEE
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG-----AERACAA 1077 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~~g--~~vi~GDatd~evL~~Ag-----I~~A~~V 1077 (1207)
+..++|.|.|.+|+.+++.|. .|..+++++++++..+.. +..+ +.++.+|.+|++.++++- ..+.|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 456889999999999999996 899999999997765433 2223 556889999998775441 1346777
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|-..
T Consensus 81 i~nA 84 (275)
T PRK06940 81 VHTA 84 (275)
T ss_pred EECC
Confidence 7654
No 349
>PRK11281 hypothetical protein; Provisional
Probab=80.11 E-value=29 Score=47.20 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=49.0
Q ss_pred HHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 000968 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (1207)
Q Consensus 196 ~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1207)
..+.+.|++.++++-..+..+++--+ .+.-|.++++-|...++..+...+++.. +........+=|..+..-+.
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k----~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~--~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQ----QLAQAPAKLRQAQAELEALKDDNDEETR--ETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHHHHH
Confidence 34566666666666555554443333 2333444455555555554443333321 11111122222333344444
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHH
Q 000968 276 DIKECQANLANCETELRRLQSKKEELQKE 304 (1207)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~q~~ 304 (1207)
+..+.|++|+.-+.+|..+|++-+..|+.
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55556666666666666655555555555
No 350
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=80.01 E-value=6.9 Score=42.65 Aligned_cols=125 Identities=21% Similarity=0.133 Sum_probs=68.2
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHhH--HhHHHHHHHHHHcCccChh---hhcc-chhhHHHHHHHHHHHHHHHHHHHHH
Q 000968 848 LGAFLAGLLLAETEFSLQVESDIAPY--RGLLLGLFFMTVGMSIDPK---LLLS-NFPVITGALGLLIGGKTILVALVGR 921 (1207)
Q Consensus 848 LGAFvAGLvLsn~~~~~~l~e~l~~~--~~~flplFFv~IGm~Idl~---~L~~-~~~~illlllllll~K~l~v~l~~~ 921 (1207)
+++|++|++++..-..+ . ...+.. +.+..-+|++-+.+.-|.. .+.. ++. .+.+-+..+++-.++.++..+
T Consensus 2 l~~li~Gi~lG~~~~~~-~-~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~-~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-F-SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKR-ALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred eeeHHHHHHHHHHhccc-c-cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766532111 0 011122 3344555655444444432 2321 222 344455667888889999999
Q ss_pred hhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHH----HHHHHHhHHHHHh
Q 000968 922 LFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLL----VGISMALTPWLAA 981 (1207)
Q Consensus 922 l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlv----vvlS~lItPlL~~ 981 (1207)
++++++++++.++.++....--+..+... .++++-++-+++ =+++.++.|++.|
T Consensus 79 ll~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 79 LLGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HhcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987766655444443321 122222222222 2456667788876
No 351
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=80.00 E-value=3.3 Score=46.83 Aligned_cols=128 Identities=17% Similarity=0.134 Sum_probs=75.6
Q ss_pred ccccCC-CchHHHHHHHHHhcC----CCeEeecCChHHHHhhh----h---C--CCCEEEecCCCHHHHHhcCccccCEE
Q 000968 1012 IILCGF-GRVGQIIAQLLSERL----IPFVALDVRSDRVAIGR----A---L--DLPVYFGDAGSREVLHKVGAERACAA 1077 (1207)
Q Consensus 1012 VIIiG~-GrvG~~Ia~~L~~~g----i~vvVID~D~e~ve~~r----~---~--g~~vi~GDatd~evL~~AgI~~A~~V 1077 (1207)
+.|+|. |.+|..++..|...+ .+++++|.++++.+... . . ...+ .. .+|+ ...+.+||.|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i-~~-~~d~----~~~~~~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV-SI-TDDP----YEAFKDADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE-EE-CCch----HHHhCCCCEE
Confidence 468999 999999999998888 78999999987654321 1 1 1122 21 2221 2335789999
Q ss_pred EEecCCc-----------chh----HHHHHHHHHhCCCceEEEeeCChHHHH--HHH-hC--CCCeeecCC-cHHHHHHH
Q 000968 1078 AITLDTP-----------GAN----YRTVWALSKYFPNVKTFVRAHDIDHGL--NLE-KA--GATAVVPET-LEPSLQLA 1136 (1207)
Q Consensus 1078 Viatddd-----------~~N----i~i~l~aR~l~P~i~IIaRa~d~~~~~--~L~-~a--GAd~VI~p~-~eaal~La 1136 (1207)
|++...+ ..| ..++..+++.+|+..++.-+ ++.+.- .+. .. .-..||--. .. ..++-
T Consensus 75 v~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t-NP~d~~t~~~~~~sg~~~~kviG~~~ld-~~r~~ 152 (263)
T cd00650 75 IITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS-NPVDIITYLVWRYSGLPKEKVIGLGTLD-PIRFR 152 (263)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHHHHHhCCCchhEEEeecch-HHHHH
Confidence 9976442 233 34566788888997766654 543222 222 22 345666333 33 33444
Q ss_pred HHHHHHcCCCH
Q 000968 1137 AAVLAQAKLPA 1147 (1207)
Q Consensus 1137 ~~iL~~lg~~~ 1147 (1207)
..+-+.+++++
T Consensus 153 ~~la~~l~v~~ 163 (263)
T cd00650 153 RILAEKLGVDP 163 (263)
T ss_pred HHHHHHhCCCc
Confidence 44444555544
No 352
>PLN02583 cinnamoyl-CoA reductase
Probab=79.99 E-value=4.3 Score=46.34 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=50.8
Q ss_pred cccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHH------Hhhh--hCCCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRV------AIGR--ALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1009 k~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~v------e~~r--~~g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
..+++|.|. |.+|+.+++.|.+.|+.|+++.++++.. ..+. ..++.++.+|.+|++.+.++ +..++.++-
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~-l~~~d~v~~ 84 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA-LKGCSGLFC 84 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH-HcCCCEEEE
Confidence 346788875 8899999999999999999988753221 1111 12567889999999988665 346777664
No 353
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.90 E-value=2.8 Score=45.67 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=55.0
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----CCCCEEEecCCCHHHHHhc------CccccCEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKV------GAERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----~g~~vi~GDatd~evL~~A------gI~~A~~VV 1078 (1207)
.++|.|. |.+|+.+++.|.+.|..|++++++++..+.... ..+.++.+|.++++-+.++ ...+.|.+|
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 86 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDILV 86 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 5677774 789999999999999999999999877654422 2366889999999988654 123567777
Q ss_pred EecC
Q 000968 1079 ITLD 1082 (1207)
Q Consensus 1079 iatd 1082 (1207)
-...
T Consensus 87 ~~ag 90 (251)
T PRK07231 87 NNAG 90 (251)
T ss_pred ECCC
Confidence 7654
No 354
>PRK06483 dihydromonapterin reductase; Provisional
Probab=79.82 E-value=3.4 Score=44.94 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=52.7
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHH-HHhhhhCCCCEEEecCCCHHHHHhc------CccccCEEEEec
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKV------GAERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~-ve~~r~~g~~vi~GDatd~evL~~A------gI~~A~~VViat 1081 (1207)
..++|.|. +.+|+.+++.|.+.|..+++++++++. .+..+..+..++.+|.++++.++++ .....|.+|-..
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 82 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNA 82 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECC
Confidence 35677775 669999999999999999999998754 3444556778899999998876442 112456666544
No 355
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.79 E-value=2.6 Score=45.91 Aligned_cols=73 Identities=11% Similarity=-0.011 Sum_probs=54.5
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhh----hhC--CCCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~~--g~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
.+++|.| .|.+|+.+++.|.+.|..+++++++++..+.. +.. .+.++.+|.++++.++++- ..+.|.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 87 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDG 87 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4577776 48999999999999999999999988765433 222 3677899999998775432 136788
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|-...
T Consensus 88 vi~~ag 93 (250)
T PRK12939 88 LVNNAG 93 (250)
T ss_pred EEECCC
Confidence 877654
No 356
>PRK07774 short chain dehydrogenase; Provisional
Probab=79.79 E-value=2.7 Score=45.99 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=53.6
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh----hC--CCCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~~--g~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
..++|.|. |.+|+.+++.|.+.|.++++++++++..+... .. ....+..|.++++.++++- ....|.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 86 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDY 86 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788886 89999999999999999999999876553332 22 3567889999998664321 135688
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
||-...
T Consensus 87 vi~~ag 92 (250)
T PRK07774 87 LVNNAA 92 (250)
T ss_pred EEECCC
Confidence 886554
No 357
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.67 E-value=2.8 Score=46.21 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=53.5
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh---CCCCEEEecCCCHHHHHhcCc------cccCEEEEe
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKVGA------ERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~---~g~~vi~GDatd~evL~~AgI------~~A~~VVia 1080 (1207)
.++|.| .|.+|+.+++.|.++|..+++++++++..+.... .....+.+|.++++.++++=- ...+.+|-.
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 87 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNN 87 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 467776 4889999999999999999999999887765432 235678899999988755321 246777764
Q ss_pred c
Q 000968 1081 L 1081 (1207)
Q Consensus 1081 t 1081 (1207)
.
T Consensus 88 a 88 (257)
T PRK07067 88 A 88 (257)
T ss_pred C
Confidence 4
No 358
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.66 E-value=2.7 Score=45.65 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=53.2
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEee-cCChHHHHhhhh------CCCCEEEecCCCHHHHHhcCc------cccC
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVAL-DVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVGA------ERAC 1075 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVI-D~D~e~ve~~r~------~g~~vi~GDatd~evL~~AgI------~~A~ 1075 (1207)
.+++|.|. |.+|+.+++.|.+.|.+++++ +++++..+.... ..+.++.+|.++++.+.++=- ...+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKID 85 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 35777775 899999999999999999999 998876543321 236678899999997755311 2567
Q ss_pred EEEEec
Q 000968 1076 AAAITL 1081 (1207)
Q Consensus 1076 ~VViat 1081 (1207)
.+|...
T Consensus 86 ~vi~~a 91 (247)
T PRK05565 86 ILVNNA 91 (247)
T ss_pred EEEECC
Confidence 777654
No 359
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.52 E-value=2.3 Score=45.37 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=43.5
Q ss_pred cccccccCCCch-HHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1009 QDHIILCGFGRV-GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1009 k~hVIIiG~Grv-G~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
..+++|+|.|.+ |..+++.|.+.|..+++++++.+. |. ..+.+||.||.+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~---------------------l~-~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN---------------------LK-EHTKQADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh---------------------HH-HHHhhCCEEEEcCCCCc
Confidence 357999999996 888999999999999999876321 11 25678899999988864
No 360
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.48 E-value=1.1e+02 Score=42.24 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000968 149 TTDELRELLMNAMKELEVAQLNSTMFE 175 (1207)
Q Consensus 149 ~~~~l~~~l~~a~~~~e~a~~~~~~~e 175 (1207)
..+.++.-|.....+|+.+.-=..-||
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYE 340 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666555554
No 361
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=79.46 E-value=87 Score=35.37 Aligned_cols=158 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHH-------HHHHHhcchHHHHHHHHHHhhcccchhHHH
Q 000968 795 VAITAIIAGGRLLLRPIYKQI-AENQNAEIFSANTLLVILGTS-------LLTARAGLSMALGAFLAGLLLAETEFSLQV 866 (1207)
Q Consensus 795 l~iil~lllg~~llrpll~~i-a~~~s~elf~l~~Lal~Lg~a-------~Lae~lGLS~~LGAFvAGLvLsn~~~~~~l 866 (1207)
...+.+-++.+++.+.+.++. ...--..+++...+.+++... +-...-=++..+|+-+..+.+|=.+.++.+
T Consensus 10 ~~~l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~l 89 (232)
T PRK04288 10 YFGILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLKLTGISYEEYNIGGDIISFFLEPATIAFAIPLYKKRDVL 89 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHhCCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHhHHhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhH
Q 000968 867 ESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFV 946 (1207)
Q Consensus 867 ~e~l~~~~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alV 946 (1207)
.+ +|..++..+++..+.-+++.+..++++|.+. .+...|.||....-+
T Consensus 90 k~----------------------------~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~----~~~~Sl~pKSVTtPI 137 (232)
T PRK04288 90 KK----------------------------YWWQILGGIVVGSVCSVLIIYLVAKLIQLDN----AVMASMLPQAATTAI 137 (232)
T ss_pred HH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH----HHHHHHhhHhhhHHH
Q ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 000968 947 AFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQ 984 (1207)
Q Consensus 947 La~lal~~glIs~el~siLvlvvvlS~lItPlL~~~~~ 984 (1207)
.+.++-+.|-+..-....++++-++..+++|++.++.+
T Consensus 138 Am~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~~ 175 (232)
T PRK04288 138 ALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLFR 175 (232)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 362
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=79.36 E-value=4.9 Score=52.04 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=57.1
Q ss_pred ccccccCCCchHHHHHHHHHhcC--CCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.++.|+|+|.+|..+++.|...| .+++++|.++++.+.+++.|... -..++. .+ .+.++|.|+++++... .
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~--~~~~~~---~~-~~~~aDvVilavp~~~-~ 76 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID--RGEEDL---AE-AVSGADVIVLAVPVLA-M 76 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC--cccCCH---HH-HhcCCCEEEECCCHHH-H
Confidence 45889999999999999999988 47999999999988777666421 011121 11 1468899999998753 3
Q ss_pred HHHHHHHHHh-CCC
Q 000968 1088 YRTVWALSKY-FPN 1100 (1207)
Q Consensus 1088 i~i~l~aR~l-~P~ 1100 (1207)
..+...++.. .++
T Consensus 77 ~~vl~~l~~~~~~~ 90 (735)
T PRK14806 77 EKVLADLKPLLSEH 90 (735)
T ss_pred HHHHHHHHHhcCCC
Confidence 3333334333 344
No 363
>PRK07877 hypothetical protein; Provisional
Probab=79.36 E-value=8.4 Score=49.90 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred cccccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
+.+|.|+|.| +|..++..|-..|+ .++++|.|.=.. -|+.+ . .....|-..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~-----------------------sNLnR--q-~~~~~diG~ 159 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLEL-----------------------SNLNR--V-PAGVFDLGV 159 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcc-----------------------ccccc--c-cCChhhccc
Confidence 4689999999 99999999999996 899998763222 22333 0 112222222
Q ss_pred h--HHHHHHHHHhCCCceEEEeeCC--hHHHHHHHhCCCCeeecCC-cHHHHHHHHHHHHHcCCCH
Q 000968 1087 N--YRTVWALSKYFPNVKTFVRAHD--IDHGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLPA 1147 (1207)
Q Consensus 1087 N--i~i~l~aR~l~P~i~IIaRa~d--~~~~~~L~~aGAd~VI~p~-~eaal~La~~iL~~lg~~~ 1147 (1207)
+ ......++++||+++|.+.... .++.+.+- .++|.||... ......+.+..-...++|.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l-~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFL-DGLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHh-cCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 2 3455678899999988887764 45555554 4799999332 2334444444444445543
No 364
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=79.36 E-value=6.8 Score=46.89 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=38.5
Q ss_pred cccccCCCchHH-HHHHHHHhcCCCeEeecCChHHHHhhhhCCC
Q 000968 1011 HIILCGFGRVGQ-IIAQLLSERLIPFVALDVRSDRVAIGRALDL 1053 (1207)
Q Consensus 1011 hVIIiG~GrvG~-~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~ 1053 (1207)
+++++|.|.+|+ .+...|.+.|+.++++|.+++.++.++++|.
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCC
Confidence 478999999999 6688999999999999999999999987775
No 365
>PRK06194 hypothetical protein; Provisional
Probab=79.21 E-value=2.5 Score=47.40 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=52.8
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhh----hhCC--CCEEEecCCCHHHHHhcCc------cccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVGA------ERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~~g--~~vi~GDatd~evL~~AgI------~~A~~ 1076 (1207)
.+++|.|. |.+|+.+++.|.+.|..++++|++++..+.. ...+ +.++.+|.+|++.++++-- ...|.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~ 86 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVHL 86 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35777774 7899999999999999999999987655433 2223 4568999999988765421 23577
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|-...
T Consensus 87 vi~~Ag 92 (287)
T PRK06194 87 LFNNAG 92 (287)
T ss_pred EEECCC
Confidence 776553
No 366
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.20 E-value=5.2 Score=46.07 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=53.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCC-eEeecCCh---HHHHhhh----hC--CCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIP-FVALDVRS---DRVAIGR----AL--DLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~---e~ve~~r----~~--g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
.+++|+|.|..|+.++..|...|.. ++++++++ ++.+.+. .. +..+...|.++.+.+.+ .++.+|.+|-
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilIN 205 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVN 205 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEE
Confidence 4789999999999999999999997 99999986 5554432 22 22344567776655543 4567899998
Q ss_pred ecCC
Q 000968 1080 TLDT 1083 (1207)
Q Consensus 1080 atdd 1083 (1207)
+|+-
T Consensus 206 aTp~ 209 (289)
T PRK12548 206 ATLV 209 (289)
T ss_pred eCCC
Confidence 8853
No 367
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.16 E-value=1.2e+02 Score=43.80 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=95.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------H---HHHHHhch-hHHHHHHHhhhHhHHHHHHHHhHHHHHH
Q 000968 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQR-------I---SEAAIALK-DEAANAWNNVNVTLDMVHEIVNEECIAK 217 (1207)
Q Consensus 149 ~~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~-------~---~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~a~ 217 (1207)
.++.-++=||.|..|+|.+ -.+=|.|..+ + .|.-+.-+ ++....|.+.+.+++++|.....|.-+|
T Consensus 1523 ~le~e~~elQ~aLeElE~~---le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k 1599 (1930)
T KOG0161|consen 1523 RLEQEKEELQAALEELEAA---LEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSK 1599 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455555566666666653 2222222222 1 12334444 4568999999999999999999888887
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHh
Q 000968 218 EAVHKA--TMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQ 295 (1207)
Q Consensus 218 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (1207)
..+-.. .|...+-|...++ +...... .|.-+-.++....+-..|.+..+|++...+--++++..+
T Consensus 1600 ~e~~r~KKkle~di~elE~~l--d~ank~~-----------~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~ae 1666 (1930)
T KOG0161|consen 1600 SEALRSKKKLEGDINELEIQL--DHANKAN-----------EDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAE 1666 (1930)
T ss_pred HHHHhhhhhhhcchHHHHHHH--HHHHHhh-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655433 2222232222222 1111110 112223334455666677788888888777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000968 296 SKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1207)
Q Consensus 296 ~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~ 326 (1207)
.|...||.|...|.+..+.+.-+-..||.+.
T Consensus 1667 rr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1667 RRLAALQAELEELREKLEALERARRQAELEL 1697 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777777766666655555543
No 368
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=79.15 E-value=4.1 Score=40.95 Aligned_cols=100 Identities=23% Similarity=0.236 Sum_probs=56.1
Q ss_pred cccccCC-CchHHHHHHHHHh-cCCC-eEeecCCh-HHH-----Hhh--hhCCCCEEEecCCCHHHHHhcCccccCEEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSE-RLIP-FVALDVRS-DRV-----AIG--RALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~-~gi~-vvVID~D~-e~v-----e~~--r~~g~~vi~GDatd~evL~~AgI~~A~~VVi 1079 (1207)
+|+|+|+ |++|+.+++.+.+ .+.+ +-++|+++ +.. +.. ...++++. +.++++- +++|.+|=
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-------~~l~~~~-~~~DVvID 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-------DDLEELL-EEADVVID 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-------S-HHHHT-TH-SEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-------hhHHHhc-ccCCEEEE
Confidence 5789999 9999999999988 6666 45666665 111 111 12344443 1222222 22787766
Q ss_pred ecCCcchhHHHHHHHHHhCCCceEEEee--CChHHHHHHHhCCC
Q 000968 1080 TLDTPGANYRTVWALSKYFPNVKTFVRA--HDIDHGLNLEKAGA 1121 (1207)
Q Consensus 1080 atddd~~Ni~i~l~aR~l~P~i~IIaRa--~d~~~~~~L~~aGA 1121 (1207)
.+ .++.-...+..+.+.. ++++.=+ .+++..+.++++..
T Consensus 74 fT-~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 74 FT-NPDAVYDNLEYALKHG--VPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp ES--HHHHHHHHHHHHHHT---EEEEE-SSSHHHHHHHHHHHTT
T ss_pred cC-ChHHhHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHHhc
Confidence 66 5555555555565554 3444433 45677777777543
No 369
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.12 E-value=2.9 Score=45.22 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=60.7
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.||+--|++|..|.++..++|++|+.|-+|+.++... ++..++.+|..|++-+ +..+..-|+||.+..-.
T Consensus 4 aiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 4 AIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFGAG 73 (211)
T ss_pred EEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEeccCC
Confidence 4677789999999999999999999999999987543 6888999999999998 66788889999887544
No 370
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=79.07 E-value=2.9 Score=49.48 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=78.6
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i 1090 (1207)
.+-|+|.|+.|+.++..=...|+.+.++|.+++..... ---.++..+..|++.|+++ ++++|. +|.+-+..+...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~--va~~~i~~~~dD~~al~el-a~~~DV--iT~EfE~V~~~a 77 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQ--VADRVIVAAYDDPEALREL-AAKCDV--ITYEFENVPAEA 77 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhh--cccceeecCCCCHHHHHHH-HhhCCE--EEEeeccCCHHH
Confidence 35689999999999999999999999999998865322 1235677778899999887 366666 466665555444
Q ss_pred HHHH---HHhCCCceEEEeeCChH-HHHHHHhCCCC
Q 000968 1091 VWAL---SKYFPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1207)
Q Consensus 1091 ~l~a---R~l~P~i~IIaRa~d~~-~~~~L~~aGAd 1122 (1207)
...+ ...+|+...+....|+- +...|.++|+-
T Consensus 78 L~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~ 113 (375)
T COG0026 78 LEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLP 113 (375)
T ss_pred HHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCC
Confidence 4333 34568888888888874 56667888854
No 371
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.98 E-value=5.2 Score=48.39 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=55.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH----HHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e----~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
.+++|+|.|+.|..+++.|.+.|..|++.|.++. ..+.++..|..++.|.... +.+.. .++.||....-+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~----~~d~vV~s~gi~~ 80 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPL-ELLDE----DFDLMVKNPGIPY 80 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCH-HHhcC----cCCEEEECCCCCC
Confidence 4689999999999999999999999999997642 2345666788887765332 22221 3677777654443
Q ss_pred hhHHHHHHHHHh
Q 000968 1086 ANYRTVWALSKY 1097 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l 1097 (1207)
.| .....+|+.
T Consensus 81 ~~-~~~~~a~~~ 91 (447)
T PRK02472 81 TN-PMVEKALEK 91 (447)
T ss_pred CC-HHHHHHHHC
Confidence 34 233344443
No 372
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=78.98 E-value=25 Score=42.67 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhc-cChhHHHhchhh
Q 000968 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-LSVERLSSMKKY 683 (1207)
Q Consensus 611 l~A~ll~~L~~Rl~~lP~IVGyLLaGILLGP~gLglI~~~------~~l~~LaeLGLv~LLF~aGLE-ldl~~Lr~~~k~ 683 (1207)
+.-++++.++.++.++|.....++.=+++- .+|++++. +.-+++..-....+|+-+|+. +|++.+.+....
T Consensus 256 ~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K--~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~ 333 (414)
T PF03390_consen 256 CSFYILGVLLSKLIGIHAYAWMIILVAIVK--AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTP 333 (414)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCH
Confidence 335667778888768999888887766665 35666542 344788888888999999998 999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhccc
Q 000968 684 VFGLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLA 722 (1207)
Q Consensus 684 il~Lg~l~vllt~vlvglll~~llGls~~-~ALlLGailS 722 (1207)
...+-.+..++..++.+.+..+++|+-+. .|+.-|.+.+
T Consensus 334 ~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~a 373 (414)
T PF03390_consen 334 QYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMA 373 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhccc
Confidence 66666666666666666666677787554 4555553443
No 373
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=78.94 E-value=3 Score=48.70 Aligned_cols=70 Identities=16% Similarity=0.036 Sum_probs=51.6
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHH----HHhhh-------hCCCCEEEecCCCHHHHHhcCccccCEEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR----VAIGR-------ALDLPVYFGDAGSREVLHKVGAERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~----ve~~r-------~~g~~vi~GDatd~evL~~AgI~~A~~VV 1078 (1207)
+++|.|. |-+|..+++.|.+.|+.|+++|+.+.. ..... ...+.++.||..+.+.|.++ ++++++||
T Consensus 17 ~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~-~~~~d~Vi 95 (348)
T PRK15181 17 RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA-CKNVDYVL 95 (348)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-hhCCCEEE
Confidence 5888885 999999999999999999999985432 11111 12467889999999877655 34678776
Q ss_pred Eec
Q 000968 1079 ITL 1081 (1207)
Q Consensus 1079 iat 1081 (1207)
=+.
T Consensus 96 HlA 98 (348)
T PRK15181 96 HQA 98 (348)
T ss_pred ECc
Confidence 654
No 374
>PLN00203 glutamyl-tRNA reductase
Probab=78.89 E-value=2.5 Score=52.70 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=53.1
Q ss_pred ccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
..++|+|.|.+|+.+++.|...|. .++++++++++.+.+... +..+.+-+..+ +. ..+.++|.||.+|+.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~-~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---ML-ACAAEADVVFTSTSSET 341 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HH-HHHhcCCEEEEccCCCC
Confidence 469999999999999999999996 699999999998777543 33332222222 22 23578999999987654
No 375
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=78.81 E-value=3.8 Score=40.58 Aligned_cols=86 Identities=17% Similarity=0.040 Sum_probs=49.9
Q ss_pred ccccC-CCchHHHHHHHHHh-cCCCeEee-cCChHHHHhhhhCC--C-CEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1012 IILCG-FGRVGQIIAQLLSE-RLIPFVAL-DVRSDRVAIGRALD--L-PVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1012 VIIiG-~GrvG~~Ia~~L~~-~gi~vvVI-D~D~e~ve~~r~~g--~-~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
+.|+| .|.+|..+++.|.. .+++++.+ +.++++-+..+..+ . ++++.+ .+.+.++ ..++|.++++++++.
T Consensus 2 i~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~DvV~~~~~~~~ 77 (122)
T smart00859 2 VAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLE-LEPEDFE---ELAVDIVFLALPHGV 77 (122)
T ss_pred EEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccc-cccCChh---hcCCCEEEEcCCcHH
Confidence 67899 59999999999988 47888877 54433322222221 1 122222 2323333 258899999999884
Q ss_pred hhHHHHHHHHHhCCCc
Q 000968 1086 ANYRTVWALSKYFPNV 1101 (1207)
Q Consensus 1086 ~Ni~i~l~aR~l~P~i 1101 (1207)
..-.+....+...++.
T Consensus 78 ~~~~~~~~~~~~~~g~ 93 (122)
T smart00859 78 SKEIAPLLPKAAEAGV 93 (122)
T ss_pred HHHHHHHHHhhhcCCC
Confidence 4433222334445553
No 376
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=78.77 E-value=35 Score=37.50 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCeEeecCChHHHHhhhh-CCCCEE---E---------ecCC--CHHHHHhcCccccCEEEEecCC--
Q 000968 1021 GQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVY---F---------GDAG--SREVLHKVGAERACAAAITLDT-- 1083 (1207)
Q Consensus 1021 G~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-~g~~vi---~---------GDat--d~evL~~AgI~~A~~VViatdd-- 1083 (1207)
-..+++.....|...+-++ +++.++..++ -+.|++ + -++. +-+...++| |+++++-...
T Consensus 25 ~~~~a~a~~~~G~~~~~~~-~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG---ad~I~~d~~~~~ 100 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRAN-GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAG---ADIIALDATLRP 100 (221)
T ss_pred HHHHHHHHHHCCCeEEEcC-CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcC---CCEEEEeCCCCC
Confidence 4567777777777655554 3555555443 244443 2 1122 223334444 5665554432
Q ss_pred -c--chhHHHHHHHHHhCCCceEEEeeCChHHHHHHHhCCCCeeec
Q 000968 1084 -P--GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVP 1126 (1207)
Q Consensus 1084 -d--~~Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~L~~aGAd~VI~ 1126 (1207)
+ +....++..+|+. +++.+++.+++.+.+..+.++|+|.+..
T Consensus 101 ~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 101 RPDGETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred CCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 2 4556777888887 8899999999999999999999999864
No 377
>PLN02735 carbamoyl-phosphate synthase
Probab=78.72 E-value=1.9 Score=58.20 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=62.6
Q ss_pred ccccccccCCCc--hHH---------HHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCE
Q 000968 1008 LQDHIILCGFGR--VGQ---------IIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACA 1076 (1207)
Q Consensus 1008 lk~hVIIiG~Gr--vG~---------~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~ 1076 (1207)
.+..++|+|.|. +|| ++++.|++.|+.+++++.||+.+..-....-..++=+.+-++++.-+.-+++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~ 652 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDG 652 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 356899999887 675 466999999999999999999976443334456666777888888888899999
Q ss_pred EEEecCCcchh
Q 000968 1077 AAITLDTPGAN 1087 (1207)
Q Consensus 1077 VViatddd~~N 1087 (1207)
|+...+.+..+
T Consensus 653 Vi~~~Ggq~~l 663 (1102)
T PLN02735 653 IIVQFGGQTPL 663 (1102)
T ss_pred EEECCCchHHH
Confidence 88877766443
No 378
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=78.72 E-value=31 Score=40.27 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=75.3
Q ss_pred cccccCC-CchHHHHHHHHHhcCCC--eEeecCCh--HHHHhhh--------hCCCC-EEEecCCCHHHHHhcCccccCE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIP--FVALDVRS--DRVAIGR--------ALDLP-VYFGDAGSREVLHKVGAERACA 1076 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~--vvVID~D~--e~ve~~r--------~~g~~-vi~GDatd~evL~~AgI~~A~~ 1076 (1207)
++.|+|. |.+|..++..|...|+. ++++|.++ +..+..+ ..+.. -+.+. ++ .+ .+.+||.
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~-~d---~~--~l~~aDi 75 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKIS-SD---LS--DVAGSDI 75 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEEC-CC---HH--HhCCCCE
Confidence 5789998 99999999999998875 89999865 3332111 11211 12221 22 22 3789999
Q ss_pred EEEecCCc-----------chhH----HHHHHHHHhCCCceEEEeeCChHH-H-HHHHhCC--CCeeecC-CcHHHHHHH
Q 000968 1077 AAITLDTP-----------GANY----RTVWALSKYFPNVKTFVRAHDIDH-G-LNLEKAG--ATAVVPE-TLEPSLQLA 1136 (1207)
Q Consensus 1077 VViatddd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~~-~-~~L~~aG--Ad~VI~p-~~eaal~La 1136 (1207)
+|++.+.+ ..|. .++..+++.+|+..+++-.+-.+- . ...+..| -..||-- +..=+.++-
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~ 155 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFK 155 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHH
Confidence 99998742 1222 344556777888777766654332 1 2223344 3355533 333344555
Q ss_pred HHHHHHcCCCH
Q 000968 1137 AAVLAQAKLPA 1147 (1207)
Q Consensus 1137 ~~iL~~lg~~~ 1147 (1207)
..+-+.+++++
T Consensus 156 ~~la~~l~v~~ 166 (309)
T cd05294 156 VAIAKHFNVHI 166 (309)
T ss_pred HHHHHHHCcCh
Confidence 55555554444
No 379
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.65 E-value=5.1 Score=48.70 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=53.1
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChH--HHHhhhh--CCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e--~ve~~r~--~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.+.++|+|.|..|..+++.|.+.|+.|++.|.++. ..+.+++ .|+.++.|.-. ++.+ .+++.||....-+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~-----~~~d~vV~sp~i~ 79 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELL-----VQASEIIISPGLA 79 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHh-----cCCCEEEECCCCC
Confidence 46789999999999999999999999999997643 3344555 38888876322 3333 4567777766555
Q ss_pred chhH
Q 000968 1085 GANY 1088 (1207)
Q Consensus 1085 ~~Ni 1088 (1207)
..|-
T Consensus 80 ~~~p 83 (448)
T PRK03803 80 LDTP 83 (448)
T ss_pred CCCH
Confidence 4443
No 380
>PLN02858 fructose-bisphosphate aldolase
Probab=78.63 E-value=8.9 Score=53.22 Aligned_cols=111 Identities=13% Similarity=-0.015 Sum_probs=74.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
+++=++|.|.+|..+++.|.+.|+++++.|+++++++.+...|..+. .++.-+- +.++.|+++++++..-..
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~a----~~advVi~~l~~~~~v~~ 76 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEAA----KDAAALVVVLSHPDQVDD 76 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHHH----hcCCEEEEEcCChHHHHH
Confidence 45778999999999999999999999999999999999888775332 2333222 468999999988865544
Q ss_pred HHH----HHHHhCCC-ceEEEeeCChHHHH----HHHhCC--CCeeecCC
Q 000968 1090 TVW----ALSKYFPN-VKTFVRAHDIDHGL----NLEKAG--ATAVVPET 1128 (1207)
Q Consensus 1090 i~l----~aR~l~P~-i~IIaRa~d~~~~~----~L~~aG--Ad~VI~p~ 1128 (1207)
+.. .+....|. +.|...+.+++... .+.+.| +.++=.|-
T Consensus 77 V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPV 126 (1378)
T PLN02858 77 VFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYV 126 (1378)
T ss_pred HHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccC
Confidence 432 22233343 23333444554444 445667 55554443
No 381
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=78.62 E-value=9.1 Score=43.75 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=65.9
Q ss_pred ccccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHhhhhC-C-CC-EEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRAL-D-LP-VYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~~r~~-g-~~-vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
.+++|+|.|..|+.++..|...| ..++++++++++.+.+.+. + .. +-+ +. + + ...+.++|.||-+++...
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~-~---~-~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DL-E---L-QEELADFDLIINATSAGM 197 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cc-c---c-hhccccCCEEEECCcCCC
Confidence 46899999999999999999999 6899999999988766432 1 10 111 11 0 1 134577999999987653
Q ss_pred hh-HHH-HHHHHHhCCCceEEEeeCCh---HHHHHHHhCCCCeee
Q 000968 1086 AN-YRT-VWALSKYFPNVKTFVRAHDI---DHGLNLEKAGATAVV 1125 (1207)
Q Consensus 1086 ~N-i~i-~l~aR~l~P~i~IIaRa~d~---~~~~~L~~aGAd~VI 1125 (1207)
.. ... -.....+.++..++=-++++ ...+..++.|+. ++
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~-~~ 241 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGAR-TI 241 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCe-ec
Confidence 21 000 00012233443333333444 455666788974 44
No 382
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=78.56 E-value=6.5 Score=43.42 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=63.3
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCC-hHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVR-SDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D-~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+.|+|.|.+|..+++.|.+.|++|++.-++ |+..+...+.-.+.+.|- +... -++.||.|+++++-+ ....
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~----~~~d--A~~~aDVVvLAVP~~-a~~~ 75 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGG----SNED--AAALADVVVLAVPFE-AIPD 75 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccC----ChHH--HHhcCCEEEEeccHH-HHHh
Confidence 4689999999999999999999999999665 444444433222222221 1122 236789999998875 4445
Q ss_pred HHHHHHHhCCCceEEEeeCChHH
Q 000968 1090 TVWALSKYFPNVKTFVRAHDIDH 1112 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~~~ 1112 (1207)
+...++....+ +|++-+.++-.
T Consensus 76 v~~~l~~~~~~-KIvID~tnp~~ 97 (211)
T COG2085 76 VLAELRDALGG-KIVIDATNPIE 97 (211)
T ss_pred HHHHHHHHhCC-eEEEecCCCcc
Confidence 55566665554 78888888743
No 383
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=78.53 E-value=13 Score=46.26 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=83.4
Q ss_pred ccCCCchHHHHHHHHHhcCCCeEeecC---ChH----HHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCC-
Q 000968 1014 LCGFGRVGQIIAQLLSERLIPFVALDV---RSD----RVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDT- 1083 (1207)
Q Consensus 1014 IiG~GrvG~~Ia~~L~~~gi~vvVID~---D~e----~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatdd- 1083 (1207)
.+|.+.-....++.|.+.|+.+++||. +.. .++.+++. +.+++-|+..+.+.-+.+--..||++.+....
T Consensus 235 avg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 235 AISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSG 314 (495)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCC
Confidence 467777778999999999999999997 332 45666654 68999999999887655555567777653211
Q ss_pred -------------cc--hhHHHHHHHHHhCCCceEEE--eeCChHHHHHHHhCCCCeeecCCcHHH
Q 000968 1084 -------------PG--ANYRTVWALSKYFPNVKTFV--RAHDIDHGLNLEKAGATAVVPETLEPS 1132 (1207)
Q Consensus 1084 -------------d~--~Ni~i~l~aR~l~P~i~IIa--Ra~d~~~~~~L~~aGAd~VI~p~~eaa 1132 (1207)
+. ....+...+++. ++++|+ -.++..++.+...+|||.|..-+..++
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYARER--GVPCIADGGIKNSGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHHhhc--CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcc
Confidence 11 112233333433 478999 999999999999999999996665433
No 384
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=78.53 E-value=3.4 Score=48.57 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHH
Q 000968 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
+-|+|.|+.|+.+++.+++.|+.++++|.+++.... ...-..+.++..|++.+.+.- +.++.+ +.+.+..+...+
T Consensus 2 igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t~e~e~i~~~~l 76 (352)
T TIGR01161 2 VGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--TFEFEHVDVEAL 76 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--EeCcCcCCHHHH
Confidence 568999999999999999999999999998764322 112235678889998887652 455553 444433333333
Q ss_pred HHHHHh----CCCceEEEeeCChH-HHHHHHhCCCC
Q 000968 1092 WALSKY----FPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1207)
Q Consensus 1092 l~aR~l----~P~i~IIaRa~d~~-~~~~L~~aGAd 1122 (1207)
..+.+. +|+...+..++|.. ....|.++|+.
T Consensus 77 ~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip 112 (352)
T TIGR01161 77 EKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLP 112 (352)
T ss_pred HHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCC
Confidence 333332 34545555566654 34445677755
No 385
>PRK12829 short chain dehydrogenase; Provisional
Probab=78.52 E-value=3.2 Score=45.71 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=54.4
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC----CCCEEEecCCCHHHHHhcC------ccccCEEE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVG------AERACAAA 1078 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~----g~~vi~GDatd~evL~~Ag------I~~A~~VV 1078 (1207)
.+++|.| .|.+|+.+++.|.++|..+++++++++..+...+. .+.++.+|.++++.+.++= ....|+||
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 91 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLV 91 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 4566666 58899999999999999999999998766544322 3467899999999876531 23578887
Q ss_pred EecC
Q 000968 1079 ITLD 1082 (1207)
Q Consensus 1079 iatd 1082 (1207)
-...
T Consensus 92 ~~ag 95 (264)
T PRK12829 92 NNAG 95 (264)
T ss_pred ECCC
Confidence 6553
No 386
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=78.50 E-value=3.4 Score=47.96 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=50.6
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChH-----HHHhhh-------hCCCCEEEecCCCHHHHHhcCcc-ccCE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGR-------ALDLPVYFGDAGSREVLHKVGAE-RACA 1076 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e-----~ve~~r-------~~g~~vi~GDatd~evL~~AgI~-~A~~ 1076 (1207)
.++|.|. |-+|+.+++.|.+.|++|++++++++ ..+... ..++.++.||.+|++.+.++=-. +.|.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 81 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPTE 81 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCCE
Confidence 4677775 89999999999999999999998753 222221 13578999999999887654222 3566
Q ss_pred EEEec
Q 000968 1077 AAITL 1081 (1207)
Q Consensus 1077 VViat 1081 (1207)
||=+.
T Consensus 82 ViH~A 86 (343)
T TIGR01472 82 IYNLA 86 (343)
T ss_pred EEECC
Confidence 66443
No 387
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.44 E-value=3.1 Score=45.53 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=55.0
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----h--CCCCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A--LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~--~g~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
.+++|.| -|.+|+.+++.|.++|+++++++++++..+... . ..+.++.+|.++++.+.++- ....+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 84 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDI 84 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3677887 599999999999999999999999987654432 1 23567899999999875542 135677
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|....
T Consensus 85 vi~~a~ 90 (258)
T PRK12429 85 LVNNAG 90 (258)
T ss_pred EEECCC
Confidence 776553
No 388
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=78.39 E-value=15 Score=42.62 Aligned_cols=93 Identities=24% Similarity=0.265 Sum_probs=62.7
Q ss_pred ccccCCCchHHHHHHHHHhcC--CCeEeecCChHHHHhhhh----C----CCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1012 IILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRA----L----DLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1012 VIIiG~GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve~~r~----~----g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
+.|+|.|.+|..++-.|...+ ..++++|.++++.+-... . ....++. ..+ . ..+..||.+|++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~---~--~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD---Y--ADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC---H--HHhCCCCEEEEcC
Confidence 468999999999999998888 479999999887643211 1 1112221 122 2 2668899999988
Q ss_pred CCc-----------chhH----HHHHHHHHhCCCceEEEeeCChH
Q 000968 1082 DTP-----------GANY----RTVWALSKYFPNVKTFVRAHDID 1111 (1207)
Q Consensus 1082 ddd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~ 1111 (1207)
+.+ ..|. .++..+++.+|+..+++-. ++.
T Consensus 75 g~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s-NP~ 118 (300)
T cd00300 75 GAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS-NPV 118 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-ChH
Confidence 764 2343 3556778889998766655 443
No 389
>PRK07825 short chain dehydrogenase; Provisional
Probab=78.26 E-value=3.5 Score=45.98 Aligned_cols=71 Identities=10% Similarity=-0.118 Sum_probs=53.1
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh-hC-CCCEEEecCCCHHHHHhcC------ccccCEEEEec
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-AL-DLPVYFGDAGSREVLHKVG------AERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r-~~-g~~vi~GDatd~evL~~Ag------I~~A~~VViat 1081 (1207)
.++|.|. |.+|+.+++.|.+.|.++++.+++++..+... .. ...++.+|.++++.++++- ....+.+|...
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~a 86 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNA 86 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5777775 78999999999999999999999988876543 22 3778899999998753311 13456776553
No 390
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.24 E-value=3.7 Score=47.61 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=51.8
Q ss_pred cccccC-CCchHHHHHHHHHhcC--CCeEeecCChHHHHhhh----hCCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGR----ALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve~~r----~~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
+++|.| .|.+|+.+++.|.+.| ..++++++++....... ..++.++.||.+|++.+.++ +++.|.||-+.
T Consensus 6 ~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~~iD~Vih~A 82 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LRGVDYVVHAA 82 (324)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-HhcCCEEEECc
Confidence 466666 5899999999999886 67888988766543221 23567899999999998765 34578877644
No 391
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=78.08 E-value=4 Score=55.17 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=73.4
Q ss_pred ccccccCCCch-----------HHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHh-cCccccCEE
Q 000968 1010 DHIILCGFGRV-----------GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK-VGAERACAA 1077 (1207)
Q Consensus 1010 ~hVIIiG~Grv-----------G~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~-AgI~~A~~V 1077 (1207)
.+|+|+|.|.. |.++++.|++.|+.+++++.||..+..-...... +|-++.+.+.+.+ +.-++.|++
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~-~y~ep~~~e~l~~ii~~e~~D~I 86 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADT-VYFEPLTVEFVKRIIAREKPDAL 86 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCe-eEECCCCHHHHHHHHHHhCcCEE
Confidence 46899999985 7899999999999999999999775433222223 3456667776655 455688898
Q ss_pred EEecCCc-chhHHHHHH----HHHh-----CCCceEEEeeCChH-HHHHHHhCCCC
Q 000968 1078 AITLDTP-GANYRTVWA----LSKY-----FPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1207)
Q Consensus 1078 Viatddd-~~Ni~i~l~----aR~l-----~P~i~IIaRa~d~~-~~~~L~~aGAd 1122 (1207)
+.+++.+ ..|....+. +.++ +|+...+..+.|+. ....|++.|..
T Consensus 87 ip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIp 142 (1068)
T PRK12815 87 LATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEP 142 (1068)
T ss_pred EECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcC
Confidence 8776543 333322111 1222 35555666667765 44567888876
No 392
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.08 E-value=3.3 Score=45.07 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=53.1
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhh----hhC--CCCEEEecCCCHHHHHh----c--CccccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHK----V--GAERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~~--g~~vi~GDatd~evL~~----A--gI~~A~~ 1076 (1207)
..++|.|. |.+|+.+++.|.+.|..++++++++++.+.. +.. ....+..|.++++.+++ . .....|.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNG 85 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46788887 9999999999999999999999998765433 222 34568899999876542 1 1235677
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|-...
T Consensus 86 vi~~ag 91 (253)
T PRK08217 86 LINNAG 91 (253)
T ss_pred EEECCC
Confidence 776543
No 393
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.97 E-value=4.9 Score=49.61 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=48.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChH--HHHhhhhC--CCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e--~ve~~r~~--g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.++.|+|.|..|..+++.|.+.|+.|++.|.++. ..+.++.. |..+..|+- +++.+ ..++.||+...-+
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~-~~~~~-----~~~d~vv~sp~I~ 80 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPF-DPALL-----DGVDLVALSPGLS 80 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCC-chhHh-----cCCCEEEECCCCC
Confidence 3699999999999999999999999999997642 33445555 445555532 34444 3567777764433
No 394
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.90 E-value=13 Score=42.90 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=30.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSD 1043 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e 1043 (1207)
++.|+|.|.+|..+++.|...|++|++.++++.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 588999999999999999999999999998753
No 395
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=77.89 E-value=6.8 Score=47.68 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=50.9
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHH----------HhcCccccCEEEEe
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVL----------HKVGAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL----------~~AgI~~A~~VVia 1080 (1207)
.+-|+|.|.+|.-++..|.+ +++|+++|.|+++++.+. .|...++ +...++.. .+ .+.+|+.++++
T Consensus 8 kI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~-e~~~~~l~~~g~l~~t~~~~-~~~~advvii~ 83 (425)
T PRK15182 8 KIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNL-ETTEEELREARYLKFTSEIE-KIKECNFYIIT 83 (425)
T ss_pred eEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCC-CCCHHHHHhhCCeeEEeCHH-HHcCCCEEEEE
Confidence 47789999999999999877 699999999999999987 4433211 11111110 11 26899999999
Q ss_pred cCCc
Q 000968 1081 LDTP 1084 (1207)
Q Consensus 1081 tddd 1084 (1207)
.+++
T Consensus 84 Vptp 87 (425)
T PRK15182 84 VPTP 87 (425)
T ss_pred cCCC
Confidence 9887
No 396
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=77.86 E-value=3.1 Score=45.81 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=53.5
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhh----hhCC--CCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~~g--~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
++++|.|. |.+|+.+++.|.+.|..|++++++++..+.. +..| +.++.+|.++++.++++= ....|.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 90 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDI 90 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 45777775 8999999999999999999999998765433 2222 567789999988776542 124567
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|....
T Consensus 91 li~~ag 96 (255)
T PRK07523 91 LVNNAG 96 (255)
T ss_pred EEECCC
Confidence 776654
No 397
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.81 E-value=5.1 Score=48.63 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=54.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHH--HHhhhh--CCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR--VAIGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~--ve~~r~--~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
.+++|+|.|..|..+++.|.+.|..|++.|.++.. .+.++. .|+.++.|.... ..+ ..++.||....-+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-~~~-----~~~d~vv~spgi~~ 79 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-ALD-----NGFDILALSPGISE 79 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-HHH-----hCCCEEEECCCCCC
Confidence 47999999999999999999999999999986542 344443 478888776432 222 46788888777665
Q ss_pred hhH
Q 000968 1086 ANY 1088 (1207)
Q Consensus 1086 ~Ni 1088 (1207)
.|-
T Consensus 80 ~~p 82 (445)
T PRK04308 80 RQP 82 (445)
T ss_pred CCH
Confidence 553
No 398
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.80 E-value=3.2 Score=51.76 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=57.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
..+-|+|+|++|+.+++.|+..|.++++.|+.... +.....|+..+ .+ |+++ +.++|.|++.++....+..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~----~~---l~el-l~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELV----DD---LDEL-LARADFITVHTPLTPETRG 209 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEc----CC---HHHH-HhhCCEEEEccCCChhhcc
Confidence 45789999999999999999999999999974221 12223343211 12 3222 3578999999887655443
Q ss_pred HH--HHHHHhCCCceEEEeeC
Q 000968 1090 TV--WALSKYFPNVKTFVRAH 1108 (1207)
Q Consensus 1090 i~--l~aR~l~P~i~IIaRa~ 1108 (1207)
++ ..+..+.|+..+|--++
T Consensus 210 li~~~~l~~mk~ga~lIN~aR 230 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCAR 230 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCC
Confidence 32 44555666655544333
No 399
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.78 E-value=13 Score=43.46 Aligned_cols=136 Identities=17% Similarity=0.162 Sum_probs=81.3
Q ss_pred cccccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhh----hhC----CCCEEEecCCCHHHHHhcCccccCEEE
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RAL----DLPVYFGDAGSREVLHKVGAERACAAA 1078 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~----r~~----g~~vi~GDatd~evL~~AgI~~A~~VV 1078 (1207)
+.++.|+|.|.+|..++..|...+. +++++|.+++..+-. ... ...-+++. .+.+ .+..||.||
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~-~dy~-----~~~~adivv 76 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-KDYS-----VTANSKVVI 76 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC-CCHH-----HhCCCCEEE
Confidence 3478999999999999999987776 599999988754311 111 11233321 1222 357889999
Q ss_pred EecCCc-----------chhH----HHHHHHHHhCCCceEEEeeCChHHH--HHH-HhCCC--CeeecC-CcHHHHHHHH
Q 000968 1079 ITLDTP-----------GANY----RTVWALSKYFPNVKTFVRAHDIDHG--LNL-EKAGA--TAVVPE-TLEPSLQLAA 1137 (1207)
Q Consensus 1079 iatddd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~~~--~~L-~~aGA--d~VI~p-~~eaal~La~ 1137 (1207)
++.+.+ ..|. .++..+++.+|+..+++-+ ++.+. ..+ +..|. ..|+-- +..-+.++-.
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs-NP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS-NPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc-ChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence 977653 3443 3445778889987665555 44332 222 22343 466644 4444555555
Q ss_pred HHHHHcCCCHHHHH
Q 000968 1138 AVLAQAKLPASEIA 1151 (1207)
Q Consensus 1138 ~iL~~lg~~~~ei~ 1151 (1207)
.+-..+++++.++.
T Consensus 156 ~la~~l~v~~~~v~ 169 (312)
T cd05293 156 LIAERLGVAPSSVH 169 (312)
T ss_pred HHHHHhCCChhhEE
Confidence 66566666554433
No 400
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.78 E-value=3.3 Score=52.85 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=57.3
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCChH---------------------HHHhhhhCCCCEEEecCCCHH-H
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e---------------------~ve~~r~~g~~vi~GDatd~e-v 1065 (1207)
...+|+|+|.|..|...+..|...|++|+++|.++. ..+.++..|+.++++.....+ .
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 356799999999999999999999999999998863 455667789888877543211 2
Q ss_pred HHhcCccccCEEEEecCCc
Q 000968 1066 LHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1066 L~~AgI~~A~~VViatddd 1084 (1207)
+... ..+.|+|+++++..
T Consensus 389 ~~~l-~~~~DaV~latGa~ 406 (639)
T PRK12809 389 FSDL-TSEYDAVFIGVGTY 406 (639)
T ss_pred HHHH-HhcCCEEEEeCCCC
Confidence 2222 24689999988763
No 401
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=77.75 E-value=2.9 Score=53.46 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=55.5
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChH---------------------HHHhhhhCCCCEEEecCCCHH-HH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-VL 1066 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e---------------------~ve~~r~~g~~vi~GDatd~e-vL 1066 (1207)
..+++|+|.|..|...+..|...|++++++|.++. .++.+...|+.+.++.....+ .+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 45899999999999999999999999999998753 144556778888887653221 12
Q ss_pred HhcCccccCEEEEecCCc
Q 000968 1067 HKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1067 ~~AgI~~A~~VViatddd 1084 (1207)
.... ..+|+|+++++..
T Consensus 273 ~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred HHHH-hhcCEEEEEcCCC
Confidence 2211 2489999988764
No 402
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.74 E-value=4.3 Score=44.77 Aligned_cols=72 Identities=11% Similarity=0.020 Sum_probs=54.3
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh-hCCCCEEEecCCCHHHHHhcCc------cccCEEEEec
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGA------ERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r-~~g~~vi~GDatd~evL~~AgI------~~A~~VViat 1081 (1207)
..++|.|. |.+|..+++.|.+.|..+++++++++..+... ..+..++..|.++++-++++-- .+.|.+|-..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNA 87 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35788887 88999999999999999999999987765443 2344688899999887654321 3567777655
No 403
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.73 E-value=4.6 Score=46.18 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=53.7
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh----C--CCCEEEecCCCHHHHHhc------CccccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----L--DLPVYFGDAGSREVLHKV------GAERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~----~--g~~vi~GDatd~evL~~A------gI~~A~~ 1076 (1207)
..++|.|. |.+|+.+++.|.+.|.++++++++++..+...+ . ...++.+|.+|++.+.++ .....|.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~ 120 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDI 120 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45777775 899999999999999999999999877654422 2 245788999998866443 1236788
Q ss_pred EEEec
Q 000968 1077 AAITL 1081 (1207)
Q Consensus 1077 VViat 1081 (1207)
+|-..
T Consensus 121 li~~A 125 (293)
T PRK05866 121 LINNA 125 (293)
T ss_pred EEECC
Confidence 77664
No 404
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.67 E-value=18 Score=41.99 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=62.0
Q ss_pred ccccc-ccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1007 DLQDH-IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1007 ~lk~h-VIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
+.++. ++|-|. +-.|+.++.++.++|-.+++.|.|++-.++-. +..++.| +|++.++-..++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv--------------~~~~~~g--~~~~y~cdis~~ 98 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETV--------------KEIRKIG--EAKAYTCDISDR 98 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHH--------------HHHHhcC--ceeEEEecCCCH
Confidence 33444 555554 45999999999999999999999987654321 2233334 788888888888
Q ss_pred chhHHHHHHHHHhCCCceEEEee
Q 000968 1085 GANYRTVWALSKYFPNVKTFVRA 1107 (1207)
Q Consensus 1085 ~~Ni~i~l~aR~l~P~i~IIaRa 1107 (1207)
+.-...+..+|+..-++.|++--
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNN 121 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNN 121 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEec
Confidence 88888888888887777777653
No 405
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.55 E-value=1.7e+02 Score=37.30 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=91.2
Q ss_pred hHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcc
Q 000968 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM----ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKE 265 (1207)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1207)
|++...-..++.-+|.+.+++..|..|+.-|.+... .+.-++...+....-++-.++.+.-.+.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~------------ 345 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES------------ 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch------------
Confidence 456666677888899999999999999988876544 3445555555555555555433332221
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000968 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1207)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m~~ae~av~~e~e~~~ 345 (1207)
|-+.....++++++++..+..++..+...+..-.++|++.+.+.+.-+..+..-.+-.+.+. ..-..|.+|-+
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~-------~Lrk~E~eAr~ 418 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ-------GLRKDELEARE 418 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 23455555666666666666555555555555555555555554444333333222222222 33445667766
Q ss_pred hcccHHHHHHHHHHhhcCCCc
Q 000968 346 RVNDAEIALQRAEKSLSNSSV 366 (1207)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~ 366 (1207)
.+......|.....-+..++.
T Consensus 419 kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 666666666665555555543
No 406
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.53 E-value=9.8 Score=45.20 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=69.4
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.+|+|+|.|-.|..+++.|...|+ .++++|.|.=....+ +..+++.. ...|-. ..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL---~Rq~l~~~-------~diG~~-------------Ka 84 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL---HRQVIHST-------AGVGQP-------------KA 84 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc---ccCcccCh-------hHCCCh-------------HH
Confidence 4689999999999999999999998 688998874332222 22223211 111211 22
Q ss_pred HHHHHHHHHhCCCceEEEeeCCh--HHHHHHHhCCCCeeecCC-cHHHHHHHHHHHHHcCCC
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d~--~~~~~L~~aGAd~VI~p~-~eaal~La~~iL~~lg~~ 1146 (1207)
..+...++++||.+++.+..... ++...+- .+.|.||.-+ ....+.+.+.+....++|
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~-~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 85 ESAREAMLALNPDVKVTVSVRRLTWSNALDEL-RDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred HHHHHHHHHHCCCcEEEEEEeecCHHHHHHHH-hCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 34667889999999887754433 3322332 4789998543 234444455555444444
No 407
>PRK12320 hypothetical protein; Provisional
Probab=77.51 E-value=7.4 Score=50.18 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=53.0
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCC
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatdd 1083 (1207)
+++|.| .|.+|+.+++.|.+.|++|+++|+++... ...++.++.||.+++. +.++ +..+|.||-+...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIHLAa~ 70 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIHLAPV 70 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEEcCcc
Confidence 477888 69999999999999999999999876542 2346789999999986 4433 4567888877643
No 408
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=77.48 E-value=2.1 Score=50.31 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=44.2
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAER 1073 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~ 1073 (1207)
+-+|+|+|.|..|..+|..|.+.|++|+++|.++.........+...+.=.+...++|++.|+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~ 69 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQ 69 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchh
Confidence 45799999999999999999999999999999876432111111122222334456777777643
No 409
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.46 E-value=11 Score=44.37 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=82.1
Q ss_pred cccccCC-CchHHHHHHHHHhcCC-------CeEeecCCh--HHHHhh----hhC-----CCCEEEecCCCHHHHHhcCc
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLI-------PFVALDVRS--DRVAIG----RAL-----DLPVYFGDAGSREVLHKVGA 1071 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi-------~vvVID~D~--e~ve~~----r~~-----g~~vi~GDatd~evL~~AgI 1071 (1207)
++.|+|. |.+|..++..|...++ .++++|.++ +..+-. ... ....+.+ .+ ...+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~--~~-----~~~~ 74 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITT--DP-----EEAF 74 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEec--Ch-----HHHh
Confidence 5789999 9999999999987543 599999987 432211 000 0001111 11 2455
Q ss_pred cccCEEEEecCCc-----------chhHH----HHHHHHHh-CCCceEEEeeCChHHH---HHHHhCC---CCeeecCCc
Q 000968 1072 ERACAAAITLDTP-----------GANYR----TVWALSKY-FPNVKTFVRAHDIDHG---LNLEKAG---ATAVVPETL 1129 (1207)
Q Consensus 1072 ~~A~~VViatddd-----------~~Ni~----i~l~aR~l-~P~i~IIaRa~d~~~~---~~L~~aG---Ad~VI~p~~ 1129 (1207)
..||.||++.+.+ ..|.. ++..+++. +|+..+++- .++-+. ...+..| ...||--+.
T Consensus 75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t~~~~k~sg~~p~~~vig~t~ 153 (323)
T cd00704 75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTNALIALKNAPNLPPKNFTALTR 153 (323)
T ss_pred CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHHHHHHHHHcCCCCHHHEEEeeH
Confidence 7899999988775 23433 44567777 498776665 455432 2335555 466775565
Q ss_pred HHHHHHHHHHHHHcCCCHHHH
Q 000968 1130 EPSLQLAAAVLAQAKLPASEI 1150 (1207)
Q Consensus 1130 eaal~La~~iL~~lg~~~~ei 1150 (1207)
.=+.++-..+-+.+++++..+
T Consensus 154 LDs~R~r~~la~~l~v~~~~V 174 (323)
T cd00704 154 LDHNRAKAQVARKLGVRVSDV 174 (323)
T ss_pred HHHHHHHHHHHHHhCcCHHHc
Confidence 556666666777777777655
No 410
>PRK08177 short chain dehydrogenase; Provisional
Probab=77.38 E-value=3.6 Score=44.54 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=53.2
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-CCCCEEEecCCCHHHHHhcCc----cccCEEEEec
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGA----ERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-~g~~vi~GDatd~evL~~AgI----~~A~~VViat 1081 (1207)
.++|.| .|.+|+.+++.|.+.|..+++++++++..+.... .+..++.+|.+|++.++++-- .+.+.++...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcC
Confidence 466666 7889999999999999999999999877654432 367788899999876543321 3577777654
No 411
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=77.32 E-value=2 Score=47.79 Aligned_cols=131 Identities=12% Similarity=0.041 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHh-----cCCCchHHHHHHHHHhhcccccc--cccCchhHHHHHHHHHHHHHHHHhhccChhHH
Q 000968 605 DVLWLLLASVIFVPIFQK-----IPGGSPVLGYLAAGILIGPYGLS--IIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1207)
Q Consensus 605 ~l~lLLl~A~ll~~L~~R-----l~~lP~IVGyLLaGILLGP~gLg--lI~~~~~l~~LaeLGLv~LLF~aGLEldl~~L 677 (1207)
.+.++...|...+.+.+- ..++|+.+|+|++|.++=...+- .+........+..+...++.-..|++++.+.+
T Consensus 101 ~~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLgt~~r~~ 180 (252)
T KOG3826|consen 101 GLIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLGTLPRAP 180 (252)
T ss_pred eeehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhcccccch
Confidence 334444445555555552 22466689999999776543221 11122334677788888999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHh
Q 000968 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (1207)
Q Consensus 678 r~~~k~il~Lg~l~vllt~vlvglll~~llGls~~~ALlLGailS~TStAVVl~IL~e 735 (1207)
++.......+++......+...+...++.+..+|.++++.|.+....+..+..+-...
T Consensus 181 ~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~~h 238 (252)
T KOG3826|consen 181 ENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDYQH 238 (252)
T ss_pred hhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccchh
Confidence 9998888887777666655555566788889999999999999998888776665543
No 412
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.23 E-value=11 Score=47.13 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=54.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh-----------hhCCC-----------CEEEecCCCHHHHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG-----------RALDL-----------PVYFGDAGSREVLH 1067 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~-----------r~~g~-----------~vi~GDatd~evL~ 1067 (1207)
.++-|+|.|.+|..|+..|...|++|++.|.+++..+.. .+.|. .+... ++. .
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~--~~~---~ 82 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV--EAL---A 82 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe--CCH---H
Confidence 468899999999999999999999999999999988763 23331 01111 122 2
Q ss_pred hcCccccCEEEEecCCcchhHHHH
Q 000968 1068 KVGAERACAAAITLDTPGANYRTV 1091 (1207)
Q Consensus 1068 ~AgI~~A~~VViatddd~~Ni~i~ 1091 (1207)
. +.+||.||-++.++..-...+
T Consensus 83 ~--~~~aDlViEav~E~~~vK~~v 104 (507)
T PRK08268 83 D--LADCDLVVEAIVERLDVKQAL 104 (507)
T ss_pred H--hCCCCEEEEcCcccHHHHHHH
Confidence 2 458999999888875544433
No 413
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.08 E-value=5.2 Score=49.96 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=56.8
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.++-|+|+|++|+.+++.|+..|.++++.|+.+.. +.....|+... +-.+. +.++|.|++.++....+..
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~----~l~el-----l~~aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV----SLDEL-----LARADFITLHTPLTPETRG 210 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE----cHHHH-----HhhCCEEEEccCCChHhhc
Confidence 45789999999999999999999999999985432 22233444322 22222 3578999999887654433
Q ss_pred HH--HHHHHhCCCceEEEee
Q 000968 1090 TV--WALSKYFPNVKTFVRA 1107 (1207)
Q Consensus 1090 i~--l~aR~l~P~i~IIaRa 1107 (1207)
+. .....+-|+..+|--+
T Consensus 211 li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred CcCHHHHhcCCCCeEEEECC
Confidence 32 3444455665444333
No 414
>PRK06184 hypothetical protein; Provisional
Probab=77.05 E-value=1.3 Score=54.63 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=32.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR 1044 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ 1044 (1207)
-.|+|||.|..|..++..|.+.|++|+++|..++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 36999999999999999999999999999987654
No 415
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=76.96 E-value=5.9 Score=45.95 Aligned_cols=90 Identities=24% Similarity=0.215 Sum_probs=59.5
Q ss_pred ccCCCchHHHHHHHHHhcCC--CeEeecCChHHHHhh----hhC----CCC-EEEecCCCHHHHHhcCccccCEEEEecC
Q 000968 1014 LCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RAL----DLP-VYFGDAGSREVLHKVGAERACAAAITLD 1082 (1207)
Q Consensus 1014 IiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~----r~~----g~~-vi~GDatd~evL~~AgI~~A~~VViatd 1082 (1207)
|+|.|.+|..++..|...+. +++++|.+++..+-. ... +.+ .+.+ .+. .....||.||++..
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~~-----~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GDY-----SDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CCH-----HHHCCCCEEEECCC
Confidence 78999999999999987776 699999987754311 111 122 2222 232 35678899999887
Q ss_pred Cc-----------chhHH----HHHHHHHhCCCceEEEeeCChH
Q 000968 1083 TP-----------GANYR----TVWALSKYFPNVKTFVRAHDID 1111 (1207)
Q Consensus 1083 dd-----------~~Ni~----i~l~aR~l~P~i~IIaRa~d~~ 1111 (1207)
.+ ..|.. ++..+++.+|+..+++-+ ++.
T Consensus 74 ~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs-NP~ 116 (299)
T TIGR01771 74 APQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT-NPV 116 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC-CHH
Confidence 64 23433 455777788997766555 443
No 416
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=76.91 E-value=7.2 Score=45.87 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=57.3
Q ss_pred cccc-cccccCCCchHHHHHHHHHhcCCCeEeecC-ChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1007 DLQD-HIILCGFGRVGQIIAQLLSERLIPFVALDV-RSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1007 ~lk~-hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~-D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
.+.+ .+-|+|+|++|+.+++.|+..|.+++..|+ .+...+ +..-+++-.+=+++|. +||.|++.++-.
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~-----~~~~~~~~~~Ld~lL~-----~sDiv~lh~PlT 208 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERA-----GVDGVVGVDSLDELLA-----EADILTLHLPLT 208 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhh-----ccccceecccHHHHHh-----hCCEEEEcCCCC
Confidence 3434 477999999999999999999999999998 333221 2233444444555555 557777766543
Q ss_pred --chhHHHHHHHHHhCCCceE
Q 000968 1085 --GANYRTVWALSKYFPNVKT 1103 (1207)
Q Consensus 1085 --~~Ni~i~l~aR~l~P~i~I 1103 (1207)
..++.-......+-|...+
T Consensus 209 ~eT~g~i~~~~~a~MK~gail 229 (324)
T COG0111 209 PETRGLINAEELAKMKPGAIL 229 (324)
T ss_pred cchhcccCHHHHhhCCCCeEE
Confidence 4445555556666666633
No 417
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=76.91 E-value=2.4 Score=50.37 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=44.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI 1071 (1207)
-.|+|+|.|..|..++-.|...|++|+++|..+... ...+ ..+.=.+...++|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~---~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPREL---LERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc---ccCc-eeeeecHhHHHHHHHcCC
Confidence 358999999999999999999999999999983222 1222 344445556677888887
No 418
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.74 E-value=8.1 Score=44.93 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=53.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHH--HHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSRE--VLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~e--vL~~AgI~~A~~VViatddd 1084 (1207)
+.++|.|.|.+|...++.++..|. .++++|.++++.+.+++.|...+. |..+.+ .+.+.. ...|.++-++..+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~-g~~D~vid~~G~~ 246 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV-NPQNDDLDHYKAEK-GYFDVSFEVSGHP 246 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCcccHHHHhccC-CCCCEEEECCCCH
Confidence 478899999999999999999998 588899999999999888876543 222221 122211 2478888888764
No 419
>PRK06436 glycerate dehydrogenase; Provisional
Probab=76.70 E-value=5.6 Score=46.30 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=56.5
Q ss_pred ccc-ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1007 DLQ-DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1007 ~lk-~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
.+. ..+-|+|+|++|+.+++.|+..|.++++.|+.... .+....+ .+ |+++ +.++|.|++.++...
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~---~~---l~el-l~~aDiv~~~lp~t~ 185 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIY---ME---PEDI-MKKSDFVLISLPLTD 185 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCccccc---CC---HHHH-HhhCCEEEECCCCCc
Confidence 344 45779999999999999999999999999986321 2222111 12 2222 467899999998876
Q ss_pred hhHHH--HHHHHHhCCCceEE
Q 000968 1086 ANYRT--VWALSKYFPNVKTF 1104 (1207)
Q Consensus 1086 ~Ni~i--~l~aR~l~P~i~II 1104 (1207)
.+..+ ......+-|+..+|
T Consensus 186 ~T~~li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 186 ETRGMINSKMLSLFRKGLAII 206 (303)
T ss_pred hhhcCcCHHHHhcCCCCeEEE
Confidence 55433 33455566665554
No 420
>PRK07831 short chain dehydrogenase; Provisional
Probab=76.67 E-value=4 Score=45.27 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=52.8
Q ss_pred ccccccCC-C-chHHHHHHHHHhcCCCeEeecCChHHHHhhh----h----CCCCEEEecCCCHHHHHhcC------ccc
Q 000968 1010 DHIILCGF-G-RVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A----LDLPVYFGDAGSREVLHKVG------AER 1073 (1207)
Q Consensus 1010 ~hVIIiG~-G-rvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~----~g~~vi~GDatd~evL~~Ag------I~~ 1073 (1207)
..++|.|. | .+|+.+++.|.+.|..++++++++++.+... . ..+.++.+|.++++.++++= ...
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 97 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLGR 97 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46888887 5 5999999999999999999999887654332 1 13567889999987654321 135
Q ss_pred cCEEEEecC
Q 000968 1074 ACAAAITLD 1082 (1207)
Q Consensus 1074 A~~VViatd 1082 (1207)
.|.+|-...
T Consensus 98 id~li~~ag 106 (262)
T PRK07831 98 LDVLVNNAG 106 (262)
T ss_pred CCEEEECCC
Confidence 677776654
No 421
>PRK09186 flagellin modification protein A; Provisional
Probab=76.59 E-value=4.3 Score=44.49 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=51.9
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh--------hCCCCEEEecCCCHHHHHhcC------cccc
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR--------ALDLPVYFGDAGSREVLHKVG------AERA 1074 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r--------~~g~~vi~GDatd~evL~~Ag------I~~A 1074 (1207)
..++|.|. |.+|+.+++.|.+.|+.+++++++++..+... ...+.++.+|.+|++.+.++= ....
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~i 84 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKI 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCc
Confidence 35777775 78999999999999999999999887764331 113446689999998775531 1235
Q ss_pred CEEEEec
Q 000968 1075 CAAAITL 1081 (1207)
Q Consensus 1075 ~~VViat 1081 (1207)
|.+|-..
T Consensus 85 d~vi~~A 91 (256)
T PRK09186 85 DGAVNCA 91 (256)
T ss_pred cEEEECC
Confidence 7777554
No 422
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.56 E-value=3.9 Score=45.74 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=51.8
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-------CCCCEEEecCCCHHHHHhcC-----ccccCEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVG-----AERACAA 1077 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-------~g~~vi~GDatd~evL~~Ag-----I~~A~~V 1077 (1207)
.++|.|. +.+|+.+++.|.+.|..+++++++++..+...+ .++.++.+|.+|++-++++- ....|.+
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~l 89 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDIF 89 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcEE
Confidence 4677776 579999999999999999999999877654321 24568899999998765431 1245666
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|...
T Consensus 90 v~na 93 (263)
T PRK08339 90 FFST 93 (263)
T ss_pred EECC
Confidence 6554
No 423
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=76.51 E-value=4.4 Score=44.97 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=53.3
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC---CCCEEEecCCCHHHHHhc------CccccCEEEEe
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKV------GAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~---g~~vi~GDatd~evL~~A------gI~~A~~VVia 1080 (1207)
.++|.|. +.+|+.+++.|.+.|..+++++++++..+.+... ...++.+|.++++.++++ ...+.|.+|-.
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ 87 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGN 87 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5677775 5799999999999999999999998877665432 367888999998876543 11345666654
Q ss_pred c
Q 000968 1081 L 1081 (1207)
Q Consensus 1081 t 1081 (1207)
.
T Consensus 88 a 88 (263)
T PRK06200 88 A 88 (263)
T ss_pred C
Confidence 4
No 424
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=76.47 E-value=2.6 Score=41.89 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=33.8
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~ 1047 (1207)
..++|+|-|.++.++++.+++.|+++++|..+++....
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~ 40 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVST 40 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccc
Confidence 46899999999999999999999999999999988643
No 425
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.39 E-value=1.3e+02 Score=33.37 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHh
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNN 198 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~ 198 (1207)
+.++++-|.+++..+..+......+|.+...+...+=-+.+.|..|-..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5677778888888887777777888877777766666666666555443
No 426
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.32 E-value=11 Score=36.92 Aligned_cols=90 Identities=23% Similarity=0.209 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEec-CCc--chhHHHHHHHHHhC
Q 000968 1022 QIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL-DTP--GANYRTVWALSKYF 1098 (1207)
Q Consensus 1022 ~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViat-ddd--~~Ni~i~l~aR~l~ 1098 (1207)
..++..|++.|+++..+|.+.+. .++.+.+.-.+.|.|.+.+ ... .....++..+|+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~ 79 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERN 79 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcC
Confidence 35667788889999988877543 3455555556888887766 333 23356777789999
Q ss_pred CCceEEEeeCC--hHHHHHHHh-CCCCeeecCCc
Q 000968 1099 PNVKTFVRAHD--IDHGLNLEK-AGATAVVPETL 1129 (1207)
Q Consensus 1099 P~i~IIaRa~d--~~~~~~L~~-aGAd~VI~p~~ 1129 (1207)
|++++++==.. ......++. .|+|.|+.-+-
T Consensus 80 p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 80 PNIPIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp TTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CCCEEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 99998887765 334444555 89999885543
No 427
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=76.31 E-value=3.4 Score=51.37 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=35.0
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~ 1048 (1207)
+|-|+|.|.+|..|+..|...|++|+++|.+++..+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA 44 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 58899999999999999999999999999999988653
No 428
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.26 E-value=9.9 Score=44.39 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=54.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecC---ChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDV---RSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~---D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
++++|.|.|.+|...++.++..|..+++++. ++++.+.+++.|...+ |..+.+..+......+|.++-++..+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g~~ 249 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATGVP 249 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcCCH
Confidence 4789999999999999999999999999987 6888888888887654 33222211111124688988888764
No 429
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.23 E-value=3.7 Score=45.38 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=52.6
Q ss_pred cccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhh----hh--CCCCEEEecCCCHHHHHhc------CccccCEE
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RA--LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~--~g~~vi~GDatd~evL~~A------gI~~A~~V 1077 (1207)
.++|.|. |.+|+.+++.|.+.|..|++++++++..+.. .. ....++.+|.++++.++++ .....|.+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 82 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDIL 82 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4677776 8899999999999999999999997765433 22 2456788999999876553 11356777
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|-+.
T Consensus 83 i~~a 86 (263)
T PRK06181 83 VNNA 86 (263)
T ss_pred EECC
Confidence 7664
No 430
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.17 E-value=22 Score=36.98 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=54.6
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000968 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1207)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~ 329 (1207)
-...+...+|+........|.|+..||.|..-|+.+|+++++....++.+....+...++.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 3456788999999999999999999999999999999999999999999988888877663
No 431
>PRK07814 short chain dehydrogenase; Provisional
Probab=76.16 E-value=4 Score=45.42 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=52.1
Q ss_pred cccccCCC-chHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhcC------ccccCEE
Q 000968 1011 HIILCGFG-RVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1207)
Q Consensus 1011 hVIIiG~G-rvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~Ag------I~~A~~V 1077 (1207)
.++|.|.+ .+|+.+++.|.++|..|++++++++..+.... .++.++.+|.++++.++++- ..+.+.+
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 91 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDIV 91 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 46666654 69999999999999999999999876554321 24567789999999876431 2356777
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|-..
T Consensus 92 i~~A 95 (263)
T PRK07814 92 VNNV 95 (263)
T ss_pred EECC
Confidence 7544
No 432
>PLN02214 cinnamoyl-CoA reductase
Probab=76.15 E-value=4.9 Score=46.95 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=54.0
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHH-----hhhh--CCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVA-----IGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve-----~~r~--~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
.+++|.|. |-+|+.+++.|.+.|+.|+++.++++... .+.. ..+.++.||.++++.+.++ +..+|+||-+.
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~Vih~A 89 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA-IDGCDGVFHTA 89 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-HhcCCEEEEec
Confidence 35888887 99999999999999999999988765421 1111 2356788999999888764 34678877766
Q ss_pred C
Q 000968 1082 D 1082 (1207)
Q Consensus 1082 d 1082 (1207)
.
T Consensus 90 ~ 90 (342)
T PLN02214 90 S 90 (342)
T ss_pred C
Confidence 3
No 433
>COG0679 Predicted permeases [General function prediction only]
Probab=76.11 E-value=46 Score=38.77 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=66.4
Q ss_pred cCCCchHHHHHHHHHhhcccccccccC-chhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHH-HHHHHHHHHH
Q 000968 623 IPGGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA-QVLVTAVVVG 700 (1207)
Q Consensus 623 l~~lP~IVGyLLaGILLGP~gLglI~~-~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l-~vllt~vlvg 700 (1207)
..+.|++++. +.|+++...++.+=+. ....+.+++...++.|+..|+.++....++........+.. -.++..+ ++
T Consensus 165 ~~~nP~i~a~-i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl-~~ 242 (311)
T COG0679 165 LLTNPLIIAL-ILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPL-VA 242 (311)
T ss_pred HHhCcHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHH-HH
Confidence 3356777664 5667776544332111 24568999999999999999999997777776665555544 3333332 33
Q ss_pred HHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 000968 701 LVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1207)
Q Consensus 701 lll~~llGls~~~ALlLGailS~TStAVVl~IL~el 736 (1207)
+...+++|++.... ....+.+...+++..-++.++
T Consensus 243 ~~~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~~ 277 (311)
T COG0679 243 LLVAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLARQ 277 (311)
T ss_pred HHHHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHHH
Confidence 33445678876544 333334444555555555443
No 434
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=76.07 E-value=3.7 Score=46.94 Aligned_cols=66 Identities=23% Similarity=0.103 Sum_probs=51.1
Q ss_pred ccCCCchHHHHHHHHHhcC--CCeEeecCChHHHH--hhhhCCCC-EEEecCCCHHHHHhcCccccCEEEEe
Q 000968 1014 LCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVA--IGRALDLP-VYFGDAGSREVLHKVGAERACAAAIT 1080 (1207)
Q Consensus 1014 IiG~GrvG~~Ia~~L~~~g--i~vvVID~D~e~ve--~~r~~g~~-vi~GDatd~evL~~AgI~~A~~VVia 1080 (1207)
.=|.|-+|+.|+++|.+.| ..|.++|..+.... .....+.. ++.||.+|++.|.++ ++.++.|+=+
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a-~~g~d~V~H~ 73 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA-LEGVDVVFHT 73 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH-hcCCceEEEe
Confidence 3478999999999999999 78899998765432 33333444 889999999999875 5778887766
No 435
>PRK09903 putative transporter YfdV; Provisional
Probab=76.06 E-value=32 Score=39.94 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHhhcccccccccC-chhHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 000968 625 GGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVA 703 (1207)
Q Consensus 625 ~lP~IVGyLLaGILLGP~gLglI~~-~~~l~~LaeLGLv~LLF~aGLEldl~~Lr~~~k~il~Lg~l~vllt~vlvglll 703 (1207)
+-|.+++. ++|+++.-.++.+-+. .+.++.+++...++-||.+|+.+....++..+ ..+...+.-.++..+++ ++.
T Consensus 172 ~nP~iia~-~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~-~~~~~~~~Kli~~P~i~-~~~ 248 (314)
T PRK09903 172 KEPVVWAP-VLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSA-EIAYNTFLKLILMPLAL-LLV 248 (314)
T ss_pred hchHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHH-HHH
Confidence 45766664 5566655433332111 24568999999999999999998776654433 33333333443332222 233
Q ss_pred HHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 000968 704 HFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1207)
Q Consensus 704 ~~llGls~~~ALlLGailS~TStAVVl~IL~el 736 (1207)
.+++|++.. ..-+..+.+...+++...++.++
T Consensus 249 ~~~~~l~~~-~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 249 GMACHLNSE-HLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHcCCCcH-HHHHHHHHHcccHHHHHHHHHHH
Confidence 345577643 33445566667777777777554
No 436
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.92 E-value=4.8 Score=43.79 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=53.0
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHh----hhhC--CCCEEEecCCCHHHHHhcC------ccccCEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAI----GRAL--DLPVYFGDAGSREVLHKVG------AERACAA 1077 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~----~r~~--g~~vi~GDatd~evL~~Ag------I~~A~~V 1077 (1207)
.++|.| .|.+|+.+++.|.++|..+++++++++.... ++.. .+.++.+|.++++.++++= ....+.+
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~v 87 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLDIL 87 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 466666 7999999999999999999999999665432 2332 3677899999998776642 1256777
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|...
T Consensus 88 i~~a 91 (251)
T PRK12826 88 VANA 91 (251)
T ss_pred EECC
Confidence 7665
No 437
>PRK08013 oxidoreductase; Provisional
Probab=75.90 E-value=2.3 Score=50.71 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=42.2
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh-hhCCCCEEEecCCCHHHHHhcCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAE 1072 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~-r~~g~~vi~GDatd~evL~~AgI~ 1072 (1207)
.|+|+|.|..|..++..|.+.|++|+++|.++...... ...+.....=++...++|++.|+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~ 67 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCc
Confidence 68999999999999999999999999999987532110 001112222234445677777753
No 438
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.89 E-value=24 Score=41.32 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=79.1
Q ss_pred cccccCC-CchHHHHHHHHHhcCC--CeEeecCChHHHH-h---hhhC-CCCEEEecCCCHHHHHhcCccccCEEEEecC
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVA-I---GRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve-~---~r~~-g~~vi~GDatd~evL~~AgI~~A~~VViatd 1082 (1207)
++.|+|. |.+|..++-.|...++ +++++|.+ +.+ . +... ...-++|-..+.+.. .....||.||++..
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y--~~~~daDivvitaG 77 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELK--KALKGADVVVIPAG 77 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchH--HhcCCCCEEEEeCC
Confidence 5789999 9999999999988875 68999988 221 1 1111 112344310111112 35689999999987
Q ss_pred Cc-----------chhH----HHHHHHHHhCCCceEEEeeCChHHH------HHH-HhCCCC--eeecCCcHHHHHHHHH
Q 000968 1083 TP-----------GANY----RTVWALSKYFPNVKTFVRAHDIDHG------LNL-EKAGAT--AVVPETLEPSLQLAAA 1138 (1207)
Q Consensus 1083 dd-----------~~Ni----~i~l~aR~l~P~i~IIaRa~d~~~~------~~L-~~aGAd--~VI~p~~eaal~La~~ 1138 (1207)
.+ ..|. .++..+++.+|+..+++ +.+|-++ ..+ +..|-. +|+--...-+.++-..
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~viv-vtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~ 156 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILI-ISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTF 156 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-ccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHH
Confidence 75 3443 34457788899875544 5555433 222 333444 6774444455566666
Q ss_pred HHHHcCCCH
Q 000968 1139 VLAQAKLPA 1147 (1207)
Q Consensus 1139 iL~~lg~~~ 1147 (1207)
+-+.+++++
T Consensus 157 la~~l~v~~ 165 (310)
T cd01337 157 VAELLGLDP 165 (310)
T ss_pred HHHHhCcCH
Confidence 666665554
No 439
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=75.80 E-value=1.9 Score=51.45 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=30.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCC
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVR 1041 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D 1041 (1207)
-+|+|+|.|..|..++-.|...|++++++|..
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 37999999999999999999999999999986
No 440
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=75.77 E-value=15 Score=44.50 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=55.9
Q ss_pred ccccccCCCchHHHHHHHHHhcC-CCeEeecCChHHHHhhh-hCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~g-i~vvVID~D~e~ve~~r-~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.+++|+|+|.+|.-+++.|...| ..+++..+..++.+.+. +.| |++...+-|. ..+..+|.||.+|..+...
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~-~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----AEAVALEELL-EALAEADVVISSTSAPHPI 252 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHH-HhhhhCCEEEEecCCCccc
Confidence 57999999999999999999999 46888888888887664 445 4554444444 3578999999999877433
No 441
>PRK02224 chromosome segregation protein; Provisional
Probab=75.72 E-value=1.6e+02 Score=39.22 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1207)
.++|..-+..+.++++.+.---.. +.+..+..+..=.+++........+...-....++-.+=...++.++.+.-.-.-
T Consensus 484 ~~~le~~l~~~~~~~e~l~~~~~~-~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~ 562 (880)
T PRK02224 484 LEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH-
Q 000968 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL- 308 (1207)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~- 308 (1207)
++..+.-+.+-+..........+.....-. +..+-+..+.....++.+++..+.+++++.+.++.+..++++++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~le--~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 563 AEEEAEEAREEVAELNSKLAELKERIESLE--RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 000968 309 ----NEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQRAEK 359 (1207)
Q Consensus 309 ----~~~~~~~~~~a~~a~~~~~~~m~~ae~av~~e~e~~~~~~~~~~~~~~~~~ 359 (1207)
.+..+...-.-.++++.+..+=.=-+++=..-=+....+...+.++.+.++
T Consensus 641 ~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~~ 695 (880)
T PRK02224 641 AEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695 (880)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.71 E-value=3.9 Score=45.05 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=53.2
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
..++|.|. +.+|+.+++.|.+.|..+++++++++..+...+ .....+.+|.++++.++++= ..+.|.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 89 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDI 89 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 35677776 789999999999999999999999877654422 23557789999998775531 135677
Q ss_pred EEEec
Q 000968 1077 AAITL 1081 (1207)
Q Consensus 1077 VViat 1081 (1207)
+|-..
T Consensus 90 lv~~a 94 (253)
T PRK05867 90 AVCNA 94 (253)
T ss_pred EEECC
Confidence 77644
No 443
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.70 E-value=2.5 Score=54.07 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=52.6
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChH---------------------HHHhhhhCCCCEEEecCCCHH-HH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-VL 1066 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e---------------------~ve~~r~~g~~vi~GDatd~e-vL 1066 (1207)
..+|+|+|.|..|...+..|...|++|+++|.++. ..+.++..|+.+..+.....+ .+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 45899999999999999999999999999998643 234556678777664322111 11
Q ss_pred HhcCccccCEEEEecCC
Q 000968 1067 HKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1067 ~~AgI~~A~~VViatdd 1083 (1207)
+.. ..++|+|+++++.
T Consensus 407 ~~~-~~~~DavilAtGa 422 (654)
T PRK12769 407 ESL-LEDYDAVFVGVGT 422 (654)
T ss_pred HHH-HhcCCEEEEeCCC
Confidence 111 1368999998865
No 444
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.70 E-value=8.8 Score=45.08 Aligned_cols=105 Identities=12% Similarity=-0.067 Sum_probs=62.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----------CCCCE--EEecCCCHHHHHhcCccccCE
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----------LDLPV--YFGDAGSREVLHKVGAERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----------~g~~v--i~GDatd~evL~~AgI~~A~~ 1076 (1207)
.++-|+|.|.+|..++..+...|++|++.|.+++..+.++. .+... ..+..+-...++ ..+..||.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~-~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIE-ACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHH-HHhcCCCE
Confidence 36889999999999999999999999999999987654322 22110 000001111232 23578899
Q ss_pred EEEecCCcchhHHH--HHHHHHhCCCceEEEeeCChHHHHHH
Q 000968 1077 AAITLDTPGANYRT--VWALSKYFPNVKTFVRAHDIDHGLNL 1116 (1207)
Q Consensus 1077 VViatddd~~Ni~i--~l~aR~l~P~i~IIaRa~d~~~~~~L 1116 (1207)
|+-+.+.+..-... ....+...|+. |++...+.-....+
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~l 127 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDF 127 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHH
Confidence 88888766332211 12223334554 66655554334444
No 445
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.56 E-value=3.9 Score=44.66 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=53.3
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----CCCCEEEecCCCHHHHHhc------CccccCEEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKV------GAERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----~g~~vi~GDatd~evL~~A------gI~~A~~VV 1078 (1207)
+++|.| .|.+|+.+++.|.+.|..+++++++++..+.... ..+.++.+|.+|++.++++ ...+.|.+|
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi 86 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLV 86 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 566666 4799999999999999999999999776544322 2357888999999887653 123567777
Q ss_pred EecC
Q 000968 1079 ITLD 1082 (1207)
Q Consensus 1079 iatd 1082 (1207)
-...
T Consensus 87 ~~ag 90 (252)
T PRK06138 87 NNAG 90 (252)
T ss_pred ECCC
Confidence 6554
No 446
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=75.54 E-value=10 Score=42.67 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=67.9
Q ss_pred cccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
+|+|+|.|-.|.++++.|...|+ .++++|.|.-....+ +..+++.. +..|-. ....
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL---nRQflf~~-------~dvGk~-------------Ka~v 57 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL---NRQFLFRP-------KDIGRP-------------KSEV 57 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh---ccccCCCh-------hhCChH-------------HHHH
Confidence 57899999999999999999987 588888875443333 11222211 111211 2234
Q ss_pred HHHHHHHhCCCceEEEeeCChHHHH---HHHhCCCCeeecC-CcHHHHHHHHHHHHHcCCCH
Q 000968 1090 TVWALSKYFPNVKTFVRAHDIDHGL---NLEKAGATAVVPE-TLEPSLQLAAAVLAQAKLPA 1147 (1207)
Q Consensus 1090 i~l~aR~l~P~i~IIaRa~d~~~~~---~L~~aGAd~VI~p-~~eaal~La~~iL~~lg~~~ 1147 (1207)
++..++++||++++.+...+..... .-.--+.|.||.- ....++...+.....++.|-
T Consensus 58 a~~~l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~ipl 119 (234)
T cd01484 58 AAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPL 119 (234)
T ss_pred HHHHHHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 5677889999999988766542211 1122467888843 22334454555554444433
No 447
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.54 E-value=10 Score=44.27 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=70.6
Q ss_pred cccccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-CCCEEEecCCCHHHHHhcCccccCEEEEecCC--
Q 000968 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDT-- 1083 (1207)
Q Consensus 1007 ~lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-g~~vi~GDatd~evL~~AgI~~A~~VViatdd-- 1083 (1207)
-...+|+|+|+|-+|.+-++...-.|-.|+++|.|.+|.+.+... +.+ +.---+++..+++ .+.+||.+|-+.--
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~r-v~~~~st~~~iee-~v~~aDlvIgaVLIpg 243 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGR-VHTLYSTPSNIEE-AVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCce-eEEEEcCHHHHHH-HhhhccEEEEEEEecC
Confidence 457899999999999999999999999999999999998877543 222 2222355566654 47899998876532
Q ss_pred -cchhHHHHHHHHHhCCCceEEEee
Q 000968 1084 -PGANYRTVWALSKYFPNVKTFVRA 1107 (1207)
Q Consensus 1084 -d~~Ni~i~l~aR~l~P~i~IIaRa 1107 (1207)
+...+..-...+.+-|..-||=.+
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 233444445578888875554333
No 448
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.46 E-value=4 Score=45.10 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=53.7
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----hC--CCCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~~--g~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
..++|.| .|.+|..+++.|.+.|..+++++++++..+... .. ...++.+|.+|++.++++= ....|.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~ 92 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDI 92 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3577776 589999999999999999999999987655443 22 3457899999998884321 134677
Q ss_pred EEEecC
Q 000968 1077 AAITLD 1082 (1207)
Q Consensus 1077 VViatd 1082 (1207)
+|-...
T Consensus 93 vi~~ag 98 (259)
T PRK08213 93 LVNNAG 98 (259)
T ss_pred EEECCC
Confidence 777654
No 449
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=75.45 E-value=20 Score=39.08 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=69.7
Q ss_pred ccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----hC---CCCEEEecCCCHHHHHhcCccccCEEEEecCCcch
Q 000968 1014 LCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL---DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1207)
Q Consensus 1014 IiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~~---g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~ 1086 (1207)
=||.|.++.+.+ +....-.++.||.|++.++..+ +. ++.++.||+ |+.|. ++.+.|++++-=.-...
T Consensus 42 GaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~--~~~~~daiFIGGg~~i~ 115 (187)
T COG2242 42 GAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP--DLPSPDAIFIGGGGNIE 115 (187)
T ss_pred CCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc--CCCCCCEEEECCCCCHH
Confidence 367777777777 5566779999999999887553 23 456777876 56777 55589998776552211
Q ss_pred hHHHHHHHHHhCCCceEEEeeCChHHHHH----HHhCCCCeee
Q 000968 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLN----LEKAGATAVV 1125 (1207)
Q Consensus 1087 Ni~i~l~aR~l~P~i~IIaRa~d~~~~~~----L~~aGAd~VI 1125 (1207)
. .+-.....+.|.-++++.+-+.++... +++.|...++
T Consensus 116 ~-ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 116 E-ILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred H-HHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 1 122233445677799999998876554 4666764443
No 450
>PRK06196 oxidoreductase; Provisional
Probab=75.43 E-value=4.5 Score=46.51 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=54.6
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh--CCCCEEEecCCCHHHHHhcC------ccccCEEEEe
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGSREVLHKVG------AERACAAAIT 1080 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~--~g~~vi~GDatd~evL~~Ag------I~~A~~VVia 1080 (1207)
..++|.|. |.+|+.+++.|.+.|.++++++++++..+.... .++.++.+|.+|++.++++- ..+.|.+|..
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~n 106 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILINN 106 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 35677775 779999999999999999999999887654432 24788999999998765432 2456777765
Q ss_pred c
Q 000968 1081 L 1081 (1207)
Q Consensus 1081 t 1081 (1207)
.
T Consensus 107 A 107 (315)
T PRK06196 107 A 107 (315)
T ss_pred C
Confidence 4
No 451
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=75.43 E-value=5.8 Score=48.17 Aligned_cols=113 Identities=21% Similarity=0.145 Sum_probs=69.8
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhh-hhCCCCEEEecC------CC-HHHHHhcCccccCEEEEec
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG-RALDLPVYFGDA------GS-REVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~-r~~g~~vi~GDa------td-~evL~~AgI~~A~~VViat 1081 (1207)
.+++|+|.|..+..+++.+++.|+.+++++.+++..... +..+..++.|+. .| +.+++-+.-.+.|+|+...
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~ 82 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGY 82 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECC
Confidence 478999999999999999999999999997765542211 112223333432 24 2445555667788887665
Q ss_pred CCcchhHHHHHHHHHh-----CCCceEEEeeCChH-HHHHHHhCCCC
Q 000968 1082 DTPGANYRTVWALSKY-----FPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1207)
Q Consensus 1082 ddd~~Ni~i~l~aR~l-----~P~i~IIaRa~d~~-~~~~L~~aGAd 1122 (1207)
+....+...+..+.++ .|+...+....|.. ....++++|+.
T Consensus 83 ~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp 129 (451)
T PRK08591 83 GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVP 129 (451)
T ss_pred CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCC
Confidence 4333333333344443 34445555666664 44456788875
No 452
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.42 E-value=3.7 Score=44.88 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=52.0
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----h---CCCCEEEecCCCHHHHHhcC---ccccCEEEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A---LDLPVYFGDAGSREVLHKVG---AERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~---~g~~vi~GDatd~evL~~Ag---I~~A~~VVi 1079 (1207)
+++|.| .|.+|+.+++.|.+.|..|++++++++..+... . ..+.++.+|.++++-++++- ..+.+.+|.
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~ 82 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLI 82 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEE
Confidence 466666 689999999999999999999999987654332 1 24678899999988765531 123477775
Q ss_pred ec
Q 000968 1080 TL 1081 (1207)
Q Consensus 1080 at 1081 (1207)
..
T Consensus 83 ~a 84 (243)
T PRK07102 83 AV 84 (243)
T ss_pred CC
Confidence 43
No 453
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.33 E-value=7.9 Score=48.01 Aligned_cols=74 Identities=16% Similarity=0.017 Sum_probs=49.9
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC------------CCCE-EEecCCCHHHHHhcCccccCEE
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL------------DLPV-YFGDAGSREVLHKVGAERACAA 1077 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~------------g~~v-i~GDatd~evL~~AgI~~A~~V 1077 (1207)
+|-|+|.|.+|..++..|...|++|++.|.+++..+.+... +.+. ..|...-.+.+.+ -+.+||.|
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~e-a~~~aD~V 84 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAE-AVAGADWI 84 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHH-HhcCCCEE
Confidence 47789999999999999999999999999999987654210 0000 0011111112222 25788999
Q ss_pred EEecCCcc
Q 000968 1078 AITLDTPG 1085 (1207)
Q Consensus 1078 Viatddd~ 1085 (1207)
+.+++++.
T Consensus 85 ieavpe~~ 92 (495)
T PRK07531 85 QESVPERL 92 (495)
T ss_pred EEcCcCCH
Confidence 99988874
No 454
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.27 E-value=4.2 Score=44.65 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=51.5
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh----hC--CCCEEEecCCCHHHHHhc--C----ccccCE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKV--G----AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~~--g~~vi~GDatd~evL~~A--g----I~~A~~ 1076 (1207)
..++|.| .|.+|..+++.|.+.|..+++++++++..+... .. .+.++.+|.++++.++++ . ..+.|.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~ 87 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLDY 87 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3566776 478999999999999999999999987654332 22 367788999999876543 1 124467
Q ss_pred EEEec
Q 000968 1077 AAITL 1081 (1207)
Q Consensus 1077 VViat 1081 (1207)
+|-..
T Consensus 88 li~~a 92 (253)
T PRK06172 88 AFNNA 92 (253)
T ss_pred EEECC
Confidence 66544
No 455
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.26 E-value=4.2 Score=44.71 Aligned_cols=72 Identities=11% Similarity=-0.001 Sum_probs=52.5
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhh----hhCC--CCEEEecCCCHHHHHhcC------ccccCE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~----r~~g--~~vi~GDatd~evL~~Ag------I~~A~~ 1076 (1207)
..++|.|. |.+|+.+++.|.+.|..+++++++++..+.. +..+ ..++.+|.++++-++++= ....+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 87 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDI 87 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35777776 8999999999999999999999998655433 2333 456789999999876431 123577
Q ss_pred EEEec
Q 000968 1077 AAITL 1081 (1207)
Q Consensus 1077 VViat 1081 (1207)
+|-+.
T Consensus 88 vi~~a 92 (262)
T PRK13394 88 LVSNA 92 (262)
T ss_pred EEECC
Confidence 66654
No 456
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=75.19 E-value=2.4 Score=38.88 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHH
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR 1044 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ 1044 (1207)
+++|+|.|..|-+++..|.+.|.++++++.++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4789999999999999999999999999987643
No 457
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.18 E-value=4.4 Score=43.94 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=53.8
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhh----h-CCCCEEEecCCCHHHHHhcC------ccccCEE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A-LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r----~-~g~~vi~GDatd~evL~~Ag------I~~A~~V 1077 (1207)
.+++|.|. |.+|+.+++.|.+.|..|++++++++..+.+. . .+++++.+|.++++.++++= ....+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~i 85 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGL 85 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 35677765 77999999999999999999999988765442 1 14678899999988775421 2345777
Q ss_pred EEecC
Q 000968 1078 AITLD 1082 (1207)
Q Consensus 1078 Viatd 1082 (1207)
+....
T Consensus 86 i~~ag 90 (238)
T PRK05786 86 VVTVG 90 (238)
T ss_pred EEcCC
Confidence 76654
No 458
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=75.11 E-value=11 Score=45.52 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=68.6
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
+.+|+|+|.|-+|..+++.|...|+ .++++|.|.-....+ +-++++.. ..+.+. ..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL---~Rq~l~~~---------~diG~~-----------Ka 98 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL---QRQVIHGQ---------SDVGRS-----------KA 98 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc---ccccccCh---------hcCCCh-----------HH
Confidence 4589999999999999999999998 588998874433322 22222221 111111 12
Q ss_pred HHHHHHHHHhCCCceEEEeeCChH--HHHHHHhCCCCeeecCC-cHHHHHHHHHHHHHcCCC
Q 000968 1088 YRTVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1207)
Q Consensus 1088 i~i~l~aR~l~P~i~IIaRa~d~~--~~~~L~~aGAd~VI~p~-~eaal~La~~iL~~lg~~ 1146 (1207)
..+...++++||+++|.+...... +...+- .+.|.||.-. ......+.+.+....++|
T Consensus 99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~-~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 159 (392)
T PRK07878 99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELF-SQYDLILDGTDNFATRYLVNDAAVLAGKP 159 (392)
T ss_pred HHHHHHHHHhCCCcEEEEEeccCChhHHHHHH-hcCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 235667889999998876655433 333332 3789888442 334444444444444444
No 459
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=75.11 E-value=10 Score=44.30 Aligned_cols=132 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred cccccCC-CchHHHHHHHHHhcCC--CeEeecCChHHHHhhh-hCC-C-CEEEe-cCCCHHHHHhcCccccCEEEEecCC
Q 000968 1011 HIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVAIGR-ALD-L-PVYFG-DAGSREVLHKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1011 hVIIiG~-GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve~~r-~~g-~-~vi~G-Datd~evL~~AgI~~A~~VViatdd 1083 (1207)
++.|+|. |.+|..++..|...++ +.+++|.++..-+.+. ... . .-+++ ...+ + + ...+..||.||++...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~-~-~-~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEE-G-L-ENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCC-c-h-HHHcCCCCEEEEeCCC
Confidence 3679999 9999999999987775 7999999872111110 011 1 12333 1111 1 1 2366899999999876
Q ss_pred c-----------chhHH----HHHHHHHhCCCceEEEeeCChHHH------HHHHh-CC--CCeeecCCcHHHHHHHHHH
Q 000968 1084 P-----------GANYR----TVWALSKYFPNVKTFVRAHDIDHG------LNLEK-AG--ATAVVPETLEPSLQLAAAV 1139 (1207)
Q Consensus 1084 d-----------~~Ni~----i~l~aR~l~P~i~IIaRa~d~~~~------~~L~~-aG--Ad~VI~p~~eaal~La~~i 1139 (1207)
+ ..|.. ++..+++.+|+..++ .+.+|-+. ..+.+ .| ...|+-....=+.++-..+
T Consensus 78 ~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iii-vvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~l 156 (312)
T TIGR01772 78 PRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMIL-VITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFV 156 (312)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEE-EecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHH
Confidence 4 34433 445677788986644 45555532 23332 33 3366633333334455555
Q ss_pred HHHcCCC
Q 000968 1140 LAQAKLP 1146 (1207)
Q Consensus 1140 L~~lg~~ 1146 (1207)
-..++++
T Consensus 157 a~~l~v~ 163 (312)
T TIGR01772 157 AELKGKD 163 (312)
T ss_pred HHHhCCC
Confidence 5544443
No 460
>PLN00198 anthocyanidin reductase; Provisional
Probab=75.09 E-value=3.9 Score=47.28 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=50.7
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHh------hhh-CCCCEEEecCCCHHHHHhcCccccCEEEEec
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAI------GRA-LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~------~r~-~g~~vi~GDatd~evL~~AgI~~A~~VViat 1081 (1207)
.++|.| .|-+|+.+++.|.+.|++|+++.+|++.... +.. .++.++.||.+|++.+.++ +.++|.||-+.
T Consensus 11 ~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih~A 88 (338)
T PLN00198 11 TACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP-IAGCDLVFHVA 88 (338)
T ss_pred eEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-HhcCCEEEEeC
Confidence 477777 7889999999999999999877766543221 111 1467889999999887664 34678877554
No 461
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.07 E-value=21 Score=41.75 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=76.7
Q ss_pred cccccCCCchHHHHHHHHHhcCC--CeEeecCChHHHH----hhhh-C---C-CC-EEEecCCCHHHHHhcCccccCEEE
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVA----IGRA-L---D-LP-VYFGDAGSREVLHKVGAERACAAA 1078 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi--~vvVID~D~e~ve----~~r~-~---g-~~-vi~GDatd~evL~~AgI~~A~~VV 1078 (1207)
.+.|+|.|.+|..++..|...+. +++++|.++++.+ .+.. . + .. .+++ .+ -.....||.||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-----y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-----YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-----HHHhCCCCEEE
Confidence 36799999999999999987776 6999999877543 1111 0 1 12 2332 23 23567889999
Q ss_pred EecCCc-------------chhHH----HHHHHHHhCCCceEEEeeCChHHHHHH--HhCC--CCeeecC-CcHHHHHHH
Q 000968 1079 ITLDTP-------------GANYR----TVWALSKYFPNVKTFVRAHDIDHGLNL--EKAG--ATAVVPE-TLEPSLQLA 1136 (1207)
Q Consensus 1079 iatddd-------------~~Ni~----i~l~aR~l~P~i~IIaRa~d~~~~~~L--~~aG--Ad~VI~p-~~eaal~La 1136 (1207)
++...+ ..|.. ++..+++.+|+..+++-++=.+-...+ +..| -.+||-. +..=+.++-
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~ 153 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLR 153 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHH
Confidence 988652 23433 445777888987555544432322211 2223 4566643 444445555
Q ss_pred HHHHHHcCCCH
Q 000968 1137 AAVLAQAKLPA 1147 (1207)
Q Consensus 1137 ~~iL~~lg~~~ 1147 (1207)
..+-+.+++++
T Consensus 154 ~~la~~l~v~~ 164 (307)
T cd05290 154 RIVADKYGVDP 164 (307)
T ss_pred HHHHHHhCCCc
Confidence 55555554444
No 462
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.04 E-value=18 Score=42.83 Aligned_cols=94 Identities=29% Similarity=0.362 Sum_probs=51.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000968 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (1207)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m~~ae~av~~e~e~~~~~~~ 349 (1207)
|..+..++.+-|..|...+.+|.+-+...+++-+++..=++.+++.+..+.+-|+.+ + .-++++=..-=||-+.++.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~-~--~~~~ei~~~~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEA-E--KQAKEIEEIKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666655555555555555444444544443332222222 1 1122222222356677888
Q ss_pred HHHHHHHHHHhhcCCCc
Q 000968 350 AEIALQRAEKSLSNSSV 366 (1207)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (1207)
|+=+|..|++.+++++.
T Consensus 87 a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 87 AEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 99999999999999984
No 463
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=75.03 E-value=6.2 Score=42.82 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=54.7
Q ss_pred ccccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh---CCCCEEEecCCCHHHHHhc------CccccCEEEE
Q 000968 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~---~g~~vi~GDatd~evL~~A------gI~~A~~VVi 1079 (1207)
.+++|.| .|.+|+.+++.|.++|..+++.+.+++..+.... ....++.+|.++.+.++++ ...+.|.+|-
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILVN 86 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4677776 6889999999999999988888888877655432 2467788999999887664 1245677776
Q ss_pred ecC
Q 000968 1080 TLD 1082 (1207)
Q Consensus 1080 atd 1082 (1207)
...
T Consensus 87 ~ag 89 (245)
T PRK12936 87 NAG 89 (245)
T ss_pred CCC
Confidence 553
No 464
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=74.98 E-value=46 Score=41.06 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=55.0
Q ss_pred cccccccCCCchHHHHHHHHHhc---CCC-eEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSER---LIP-FVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~---gi~-vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
..+++|+|.|..|+.+++.|++. |+. +-++|.|+.. ..+++ ++|+..+. .+-+.-.+++.|+++.+..
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----g~~Vp-vlG~~~dL--~~~v~~~~IdeViIAip~~ 214 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----GVSND-WAGNLQQL--VEDAKAGKIHNVYIAMSMC 214 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----cCCCC-cCCCHHHH--HHHHHhCCCCEEEEeCCCc
Confidence 35799999999999999999765 343 3456765411 11222 35654332 2333335688888888765
Q ss_pred chh--HHHHHHHHHhCCCceEEEeeC
Q 000968 1085 GAN--YRTVWALSKYFPNVKTFVRAH 1108 (1207)
Q Consensus 1085 ~~N--i~i~l~aR~l~P~i~IIaRa~ 1108 (1207)
+.. ..++..+++..-+++++-...
T Consensus 215 ~~~~l~ell~~~~~~~v~V~ivP~l~ 240 (463)
T PRK10124 215 DGARVKKLVRQLADTTCSVLLIPDVF 240 (463)
T ss_pred chHHHHHHHHHHHHcCCeEEEecchh
Confidence 432 345555666655555554443
No 465
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=74.89 E-value=3.7 Score=52.52 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=51.9
Q ss_pred cccccccC-CCchHHHHHHHHHhc-CCCeEeecCChHHHHhh-hhCCCCEEEecCCCHHHH-HhcCccccCEEE
Q 000968 1009 QDHIILCG-FGRVGQIIAQLLSER-LIPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVL-HKVGAERACAAA 1078 (1207)
Q Consensus 1009 k~hVIIiG-~GrvG~~Ia~~L~~~-gi~vvVID~D~e~ve~~-r~~g~~vi~GDatd~evL-~~AgI~~A~~VV 1078 (1207)
..+|+|.| .|-+|+.+++.|.+. |++|+++|+++...... ...+++++.||.+|+..+ +++ +.++|+||
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~~D~Vi 387 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKKCDVVL 387 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcCCCEEE
Confidence 34688888 599999999999985 79999999987654332 234688999999986553 332 45678877
No 466
>PLN02477 glutamate dehydrogenase
Probab=74.84 E-value=7.8 Score=46.97 Aligned_cols=105 Identities=23% Similarity=0.222 Sum_probs=65.3
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeE-eecCC----------hHHHHhhhhC-C-CCEEEe-c-CCCHHHHHhcCcccc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFV-ALDVR----------SDRVAIGRAL-D-LPVYFG-D-AGSREVLHKVGAERA 1074 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vv-VID~D----------~e~ve~~r~~-g-~~vi~G-D-atd~evL~~AgI~~A 1074 (1207)
.+++|.|+|.+|+.+++.|.+.|..++ |-|.+ .+.+...++. + +.-+.| . .+..++|. .++
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~----~~~ 282 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV----EPC 282 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee----ccc
Confidence 369999999999999999999999999 66776 5554333222 1 111111 1 12233332 267
Q ss_pred CEEEEecCCcchhHHHHHHHHHhCCCceEEEeeCC----hHHHHHHHhCCCCe
Q 000968 1075 CAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATA 1123 (1207)
Q Consensus 1075 ~~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d----~~~~~~L~~aGAd~ 1123 (1207)
|.++=+.-....|-..+ .++ ++++|+..-+ ++..+.|++-|+-.
T Consensus 283 DvliP~Al~~~I~~~na---~~i--~ak~I~egAN~p~t~ea~~~L~~rGI~~ 330 (410)
T PLN02477 283 DVLIPAALGGVINKENA---ADV--KAKFIVEAANHPTDPEADEILRKKGVVV 330 (410)
T ss_pred cEEeeccccccCCHhHH---HHc--CCcEEEeCCCCCCCHHHHHHHHHCCcEE
Confidence 77665544434444433 333 5788888764 67888899888653
No 467
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.81 E-value=6.1 Score=42.56 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=52.5
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHH----hhhhCCCCEEEecCCCHHHHHhcC------ccccCEEEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA----IGRALDLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve----~~r~~g~~vi~GDatd~evL~~Ag------I~~A~~VVi 1079 (1207)
.++|.| .|.+|+.+++.|.+.|.+++++++|++... .....+..++.+|..+.+.++++- ....+.++-
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~ 88 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVN 88 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEE
Confidence 355555 599999999999999999999999876533 234457788899999988775432 125677766
Q ss_pred ec
Q 000968 1080 TL 1081 (1207)
Q Consensus 1080 at 1081 (1207)
..
T Consensus 89 ~a 90 (239)
T PRK12828 89 IA 90 (239)
T ss_pred CC
Confidence 54
No 468
>PRK01581 speE spermidine synthase; Validated
Probab=74.73 E-value=20 Score=43.02 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=63.1
Q ss_pred ccccccCCCchHHHHHHHHHhc-CCCeEeecCChHHHHhhhh--------------CCCCEEEecCCCHHHHHhcCcccc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSER-LIPFVALDVRSDRVAIGRA--------------LDLPVYFGDAGSREVLHKVGAERA 1074 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~-gi~vvVID~D~e~ve~~r~--------------~g~~vi~GDatd~evL~~AgI~~A 1074 (1207)
.+|+++|+|. |..+...|+.. ...+++||.|++.++.++. ..+.+++||+.+ .+... -++.
T Consensus 152 krVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~~-~~~Y 227 (374)
T PRK01581 152 KRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSSP-SSLY 227 (374)
T ss_pred CEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHhc-CCCc
Confidence 3799999884 44555555533 2579999999999887763 256778899884 44443 3578
Q ss_pred CEEEEecCCcch----hH----HHHHHHHHhCCCceEEEeeCCh
Q 000968 1075 CAAAITLDTPGA----NY----RTVWALSKYFPNVKTFVRAHDI 1110 (1207)
Q Consensus 1075 ~~VViatddd~~----Ni----~i~l~aR~l~P~i~IIaRa~d~ 1110 (1207)
|.|++-.+|+.. .+ ......+.+.|+-.+++....+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 999988766532 11 2334455677776555554433
No 469
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=74.65 E-value=5.9 Score=51.99 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=55.7
Q ss_pred ccccccCCCchHHHH-HHHHHhcCCCeEeecCCh-HHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchh
Q 000968 1010 DHIILCGFGRVGQII-AQLLSERLIPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~I-a~~L~~~gi~vvVID~D~-e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~N 1087 (1207)
.|+.|+|.|..|... ++.|.+.|+.|++.|.++ +..+.++..|+.++.|. +++.+ ..+|.||....-+..|
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~--~~~~~-----~~~d~vV~SpgI~~~~ 77 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGH--QEEHV-----PEDAVVVYSSSISKDN 77 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHc-----CCCCEEEECCCcCCCC
Confidence 378999999999998 999999999999999764 34556777899988887 33433 4678888766555555
Q ss_pred HH
Q 000968 1088 YR 1089 (1207)
Q Consensus 1088 i~ 1089 (1207)
-.
T Consensus 78 p~ 79 (809)
T PRK14573 78 VE 79 (809)
T ss_pred HH
Confidence 43
No 470
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.65 E-value=1.3e+02 Score=38.05 Aligned_cols=146 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHH-------------HHHHHHhchhHHHHHHHhhhHhHHHHHHHHh
Q 000968 150 TDELRELLMNAMKELEVAQLNSTMFEEK-----AQR-------------ISEAAIALKDEAANAWNNVNVTLDMVHEIVN 211 (1207)
Q Consensus 150 ~~~l~~~l~~a~~~~e~a~~~~~~~e~~-----~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1207)
.+.|||-|+.+..+++..+-..+++-+. ++| .++..+.|.|... +|..-.+-.+-......
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l-~lke~~~q~~qEk~~l~ 363 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASL-ELKEGRSQWAQEKQALQ 363 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHH
Q 000968 212 EECIAK-EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETE 290 (1207)
Q Consensus 212 ~e~~a~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1207)
.+.++. +-+++-..-+.+++-.+|-...--+.. +.++.+|- +.-+--+.|.+--|.+.+.-
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL---------------~~ql~ke~---D~n~vqlsE~~rel~Elks~ 425 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKL---------------EKQLGKEK---DCNRVQLSENRRELQELKSS 425 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhh---hhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 000968 291 LRRLQSKKEELQKEVDRLNEVAEK 314 (1207)
Q Consensus 291 l~~~~~~~~~~q~~~~~~~~~~~~ 314 (1207)
||-+|..|++||.|-.-|-+-.++
T Consensus 426 lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 426 LRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 471
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=74.57 E-value=27 Score=41.11 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=77.8
Q ss_pred cCCCchHHHHHHHHHhcCCCeEeecC---Ch----HHHHhhhhCC--CCEEEecCCCHHHHHhcCccccCEEEEecCC--
Q 000968 1015 CGFGRVGQIIAQLLSERLIPFVALDV---RS----DRVAIGRALD--LPVYFGDAGSREVLHKVGAERACAAAITLDT-- 1083 (1207)
Q Consensus 1015 iG~GrvG~~Ia~~L~~~gi~vvVID~---D~----e~ve~~r~~g--~~vi~GDatd~evL~~AgI~~A~~VViatdd-- 1083 (1207)
+|...-....++.|.+.|.+++++|. ++ +.++.+++.+ .+++.|+..+.+.-+++--..||.|++....
T Consensus 89 ~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 89 VGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred cCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 45555667788888889999999986 22 3455556554 7888899999888777766778888763211
Q ss_pred ----------cchhHHHHHHHHHhCC--CceEEE--eeCChHHHHHHHhCCCCeeecCCc
Q 000968 1084 ----------PGANYRTVWALSKYFP--NVKTFV--RAHDIDHGLNLEKAGATAVVPETL 1129 (1207)
Q Consensus 1084 ----------d~~Ni~i~l~aR~l~P--~i~IIa--Ra~d~~~~~~L~~aGAd~VI~p~~ 1129 (1207)
...++..+..+.+..+ ++++|+ -..+..++.+...+||+-|..-+.
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecch
Confidence 0112222222222211 578998 788999999999999999986443
No 472
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.51 E-value=4.8 Score=43.92 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=54.5
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhcC------ccccCEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~Ag------I~~A~~V 1077 (1207)
.++|.| .|.+|+.+++.|.+.|..+++++++++..+.+.. ..+.++.+|.++++.++++- ....|.+
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~v 84 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVL 84 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 466766 5889999999999999999999999876554321 24678899999998876641 1356777
Q ss_pred EEecC
Q 000968 1078 AITLD 1082 (1207)
Q Consensus 1078 Viatd 1082 (1207)
|....
T Consensus 85 i~~ag 89 (250)
T TIGR03206 85 VNNAG 89 (250)
T ss_pred EECCC
Confidence 77664
No 473
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=74.50 E-value=1.2e+02 Score=34.03 Aligned_cols=89 Identities=13% Similarity=-0.001 Sum_probs=51.7
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHH
Q 000968 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVG 970 (1207)
Q Consensus 891 l~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvv 970 (1207)
.+.+..+|..++..+.+..+.-++..+..++++|.+.. + ...+.||....-+...++...|-...-...+++++-+
T Consensus 80 ~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i--~~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi 155 (226)
T TIGR00659 80 LPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--I--IASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGL 155 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33444455544444444445556677888888888742 2 2356788877666666666665543333333334445
Q ss_pred HHHHhHHHHHhhh
Q 000968 971 ISMALTPWLAAGG 983 (1207)
Q Consensus 971 lS~lItPlL~~~~ 983 (1207)
+..+++|.+.++.
T Consensus 156 ~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 156 LGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHc
Confidence 6667777776654
No 474
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=74.43 E-value=3.5 Score=55.79 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred ccccccccCCCc--hHH---------HHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCE
Q 000968 1008 LQDHIILCGFGR--VGQ---------IIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACA 1076 (1207)
Q Consensus 1008 lk~hVIIiG~Gr--vG~---------~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~ 1076 (1207)
.+..++|+|.|. +|+ .+++.|++.|+.++++|.||+.+.........+++-..+-+.++.-+.-++.+.
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dg 632 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKG 632 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCE
Confidence 356799999887 454 468999999999999999998865332222234554445556666667788899
Q ss_pred EEEecCCcchhHHHHHHHHHhC-----CCceEEEeeCChH-HHHHHHhCCCC
Q 000968 1077 AAITLDTPGANYRTVWALSKYF-----PNVKTFVRAHDID-HGLNLEKAGAT 1122 (1207)
Q Consensus 1077 VViatddd~~Ni~i~l~aR~l~-----P~i~IIaRa~d~~-~~~~L~~aGAd 1122 (1207)
|++..+.+.. +.++..+.+.+ ++...+..+.|+. ....|.++|+.
T Consensus 633 Vi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp 683 (1066)
T PRK05294 633 VIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIP 683 (1066)
T ss_pred EEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcC
Confidence 8887665432 23444443332 2223344445543 45556788876
No 475
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=74.41 E-value=2.9 Score=49.52 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=43.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHH-HHhhhhCCCCEEEecCCCHHHHHhcCcc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~-ve~~r~~g~~vi~GDatd~evL~~AgI~ 1072 (1207)
.|+|+|.|..|..++-.|.+.|++++++|..+.. .......+...+.-.+...++|++.|+.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~ 67 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCc
Confidence 5999999999999999999999999999976521 1111111333333344556777777754
No 476
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.34 E-value=11 Score=42.58 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=54.0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCC-eEeecCChHHHHhhhhCCCCEEEe-cCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRALDLPVYFG-DAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~-vvVID~D~e~ve~~r~~g~~vi~G-Datd~evL~~AgI~~A~~VViatddd 1084 (1207)
+.++|.|.|.+|...++.++..|.. ++++|.++++.+.+++.|...+.- +.....+.+..+-..+|.++-++..+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 4688899999999999999999997 888999999998888888654432 11112222222334588888777654
No 477
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.32 E-value=31 Score=40.60 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000968 194 NAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1207)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1207)
..+......++..+....+-.+.++.+.++...+.-|+++++.+.+.+..
T Consensus 128 ~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 128 ANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA 177 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666666677777776776666666666666554444
No 478
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=74.31 E-value=14 Score=42.07 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=66.5
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeE-eec----------CChHHHHhh---hh-CC-----CCEEEe--cC-CCHHHH
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFV-ALD----------VRSDRVAIG---RA-LD-----LPVYFG--DA-GSREVL 1066 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vv-VID----------~D~e~ve~~---r~-~g-----~~vi~G--Da-td~evL 1066 (1207)
.+++|.|+|.+|+.+++.|.+.|..++ |-| .|.+.++.+ +. .+ ++--++ .. +..+.|
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~ 118 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW 118 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh
Confidence 479999999999999999999999999 555 123333111 11 11 000001 11 222333
Q ss_pred HhcCccccCEEEEecCCcchhHHHHHHHHHhCCCceEEEeeCC----hHHHHHHHhCCCCe
Q 000968 1067 HKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATA 1123 (1207)
Q Consensus 1067 ~~AgI~~A~~VViatddd~~Ni~i~l~aR~l~P~i~IIaRa~d----~~~~~~L~~aGAd~ 1123 (1207)
. ..+|.++=+.-....|...+..++. +++++|+..-+ ++..+.|++-|+-.
T Consensus 119 ~----~~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L~~rGI~v 173 (254)
T cd05313 119 E----VPCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVFRQAGVLF 173 (254)
T ss_pred c----CCCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHHHHCCcEE
Confidence 2 2577777666555566665555543 35789988764 67888888888653
No 479
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=74.29 E-value=4 Score=50.09 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=55.1
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCChH---------------------HHHhhhhCCCCEEEecCCCHHH-
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSREV- 1065 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e---------------------~ve~~r~~g~~vi~GDatd~ev- 1065 (1207)
...+++|+|.|..|...+..|...|++++++|..+. ..+.+.+.|+.++.+.....++
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~ 221 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDIT 221 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCC
Confidence 345899999999999999999999999999997642 2344566788888776543211
Q ss_pred HHhcCccccCEEEEecCCc
Q 000968 1066 LHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1066 L~~AgI~~A~~VViatddd 1084 (1207)
.... ..+++.+|++++..
T Consensus 222 ~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 222 AEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred HHHH-HhhCCEEEEecCCC
Confidence 1111 14689999998764
No 480
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=74.29 E-value=2.4e+02 Score=35.48 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=16.2
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHH
Q 000968 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDR 307 (1207)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~ 307 (1207)
|..-.+++.+-+..|..-+.+|.+.+...+++++|..+
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444333
No 481
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=74.23 E-value=50 Score=35.60 Aligned_cols=128 Identities=14% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCeEeecCChH----HHHhhhhCC--CCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHHHHHHHH
Q 000968 1022 QIIAQLLSERLIPFVALDVRSD----RVAIGRALD--LPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALS 1095 (1207)
Q Consensus 1022 ~~Ia~~L~~~gi~vvVID~D~e----~ve~~r~~g--~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR 1095 (1207)
..+++.|.+.|++.+-++.+.. .++.+++.. +.+--|...+.+-++.+---.|+.++..-.++ .+...+|
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~----~~~~~~~ 94 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDP----EVVKAAN 94 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCH----HHHHHHH
Q ss_pred HhCCCceEEEeeCChHHHHHHHhCCCCee-ecCCcHHHHHHHHHHHHHc---------CCCHHHHHHHHH
Q 000968 1096 KYFPNVKTFVRAHDIDHGLNLEKAGATAV-VPETLEPSLQLAAAVLAQA---------KLPASEIAATIN 1155 (1207)
Q Consensus 1096 ~l~P~i~IIaRa~d~~~~~~L~~aGAd~V-I~p~~eaal~La~~iL~~l---------g~~~~ei~~~i~ 1155 (1207)
+.++ +++.-+.+.+++....++|+|++ +.|....+....+.+...+ |+..+.+..+++
T Consensus 95 ~~~~--~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~ 162 (190)
T cd00452 95 RAGI--PLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLA 162 (190)
T ss_pred HcCC--cEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHH
No 482
>PRK12704 phosphodiesterase; Provisional
Probab=74.15 E-value=1.7e+02 Score=36.96 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=9.9
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHH
Q 000968 270 LLAAENDIKECQANLANCETELRRL 294 (1207)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (1207)
|..-++++.+-+.+|..-+.+|...
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~ 129 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKK 129 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333333
No 483
>PRK05875 short chain dehydrogenase; Provisional
Probab=74.15 E-value=4.7 Score=44.98 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=53.3
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh--------CCCCEEEecCCCHHHHHhcC------cccc
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKVG------AERA 1074 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~--------~g~~vi~GDatd~evL~~Ag------I~~A 1074 (1207)
..++|.|. |.+|+.+++.|.+.|.++++++++++..+.... ..+.++.+|.++++-+.++= ..+.
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 87 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRL 87 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46888886 899999999999999999999998776543321 23567889999998765431 1256
Q ss_pred CEEEEec
Q 000968 1075 CAAAITL 1081 (1207)
Q Consensus 1075 ~~VViat 1081 (1207)
|.+|-..
T Consensus 88 d~li~~a 94 (276)
T PRK05875 88 HGVVHCA 94 (276)
T ss_pred CEEEECC
Confidence 7777654
No 484
>PRK05717 oxidoreductase; Validated
Probab=74.15 E-value=6.4 Score=43.46 Aligned_cols=71 Identities=17% Similarity=0.012 Sum_probs=51.1
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhh-h--CCCCEEEecCCCHHHHHhc------CccccCEEEEe
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-A--LDLPVYFGDAGSREVLHKV------GAERACAAAIT 1080 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r-~--~g~~vi~GDatd~evL~~A------gI~~A~~VVia 1080 (1207)
.++|.| .|.+|+.+++.|.+.|..+++++++++..+... . ....++.+|.++++-++++ ...+.|.+|-.
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 91 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVCN 91 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 477777 489999999999999999999998876654432 2 2356789999998765432 11246777654
Q ss_pred c
Q 000968 1081 L 1081 (1207)
Q Consensus 1081 t 1081 (1207)
.
T Consensus 92 a 92 (255)
T PRK05717 92 A 92 (255)
T ss_pred C
Confidence 4
No 485
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=74.11 E-value=6.1 Score=48.56 Aligned_cols=114 Identities=18% Similarity=0.097 Sum_probs=69.9
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHH-hhhhCCCCEEEe------cCCCH-HHHHhcCccccCEEEEec
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVA-IGRALDLPVYFG------DAGSR-EVLHKVGAERACAAAITL 1081 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve-~~r~~g~~vi~G------Datd~-evL~~AgI~~A~~VViat 1081 (1207)
.+++|+|.|+.+..+++.+++.|+.++++..+++.-. ..+-.+..+..| +-.|. .+++.+.-.++++|+...
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~ 85 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGY 85 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECC
Confidence 5799999999999999999999999999955433211 111123233345 44453 455666666788877654
Q ss_pred CCcchhHHHHHHHHHh-----CCCceEEEeeCChH-HHHHHHhCCCCe
Q 000968 1082 DTPGANYRTVWALSKY-----FPNVKTFVRAHDID-HGLNLEKAGATA 1123 (1207)
Q Consensus 1082 ddd~~Ni~i~l~aR~l-----~P~i~IIaRa~d~~-~~~~L~~aGAd~ 1123 (1207)
+-...|...+....+. +|+...+....|.. ....+.++|+..
T Consensus 86 g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~ 133 (467)
T PRK12833 86 GFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPT 133 (467)
T ss_pred CccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 3323343333333332 45656666777765 445567888763
No 486
>PRK12472 hypothetical protein; Provisional
Probab=74.02 E-value=61 Score=39.96 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHH
Q 000968 214 CIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRR 293 (1207)
Q Consensus 214 ~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (1207)
.-++-.+.++..+..-|+++|..|-..|++++- | ++-. +
T Consensus 221 ~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~---------------d-----~~~~---------------------~ 259 (508)
T PRK12472 221 APLKASLRKLERAKARADAELKRADKALAAAKT---------------D-----EAKA---------------------R 259 (508)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------c-----hhhh---------------------h
Confidence 344555666666777788888888888877541 0 1111 1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 000968 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIAL 354 (1207)
Q Consensus 294 ~~~~~~~~q~~~~~~~~~~~~~~~~a~~a~~~~~~~m~~ae~av~~e~e~~~~~~~~~~~~ 354 (1207)
.+.+|.++-.++...+..++.|+.+|...+..++..-..|..|=+.--|++.-.+||+.++
T Consensus 260 a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~a~~a~l~~ 320 (508)
T PRK12472 260 AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAKLAL 320 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134555555666667777778888888888888877778877777778888888887765
No 487
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.99 E-value=91 Score=39.45 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 000968 227 LSLAEARLQVAIESLQD 243 (1207)
Q Consensus 227 ~~~a~~~~~~~~~~~~~ 243 (1207)
++-+...++-+...+..
T Consensus 275 l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 275 VGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 488
>PRK07890 short chain dehydrogenase; Provisional
Probab=73.91 E-value=5.1 Score=43.99 Aligned_cols=71 Identities=13% Similarity=0.014 Sum_probs=52.8
Q ss_pred cccccC-CCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh------CCCCEEEecCCCHHHHHhc------CccccCEE
Q 000968 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1207)
Q Consensus 1011 hVIIiG-~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~------~g~~vi~GDatd~evL~~A------gI~~A~~V 1077 (1207)
.++|.| .|.+|+.+++.|.++|..|++++++++..+.+.. ..+..+..|.++++.++++ ...+.|.+
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~v 86 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDAL 86 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCccEE
Confidence 466666 4789999999999999999999999876654421 2357789999999876532 12456777
Q ss_pred EEec
Q 000968 1078 AITL 1081 (1207)
Q Consensus 1078 Viat 1081 (1207)
|-..
T Consensus 87 i~~a 90 (258)
T PRK07890 87 VNNA 90 (258)
T ss_pred EECC
Confidence 7655
No 489
>PRK08309 short chain dehydrogenase; Provisional
Probab=73.91 E-value=5.3 Score=42.76 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=44.5
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-----CCCCEEEecCCCHHHHHh
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHK 1068 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-----~g~~vi~GDatd~evL~~ 1068 (1207)
+++|.|...+|..+++.|.+.|+.+++++++++..+.+.. ..+.++.+|.+|++.+.+
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~ 64 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKL 64 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHH
Confidence 4788888788888999999999999999999887665432 234556678888766654
No 490
>PRK08605 D-lactate dehydrogenase; Validated
Probab=73.89 E-value=3.4 Score=48.54 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=53.1
Q ss_pred cccccCCCchHHHHHHHH-HhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcCccccCEEEEecCCcchhHH
Q 000968 1011 HIILCGFGRVGQIIAQLL-SERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L-~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd~~Ni~ 1089 (1207)
.+-|+|+|.+|+.+++.| ...|.++++.|+++.... ..+. ... ..|+++ +.++|.|+++++....+..
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~-----~~~--~~l~el-l~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 148 KVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYV-----DYK--DTIEEA-VEGADIVTLHMPATKYNHY 216 (332)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hhhc-----ccc--CCHHHH-HHhCCEEEEeCCCCcchhh
Confidence 588999999999999999 667889999988765421 1111 111 123332 4678999999887655543
Q ss_pred HH--HHHHHhCCCceEE
Q 000968 1090 TV--WALSKYFPNVKTF 1104 (1207)
Q Consensus 1090 i~--l~aR~l~P~i~II 1104 (1207)
+. .....+.|+..+|
T Consensus 217 li~~~~l~~mk~gailI 233 (332)
T PRK08605 217 LFNADLFKHFKKGAVFV 233 (332)
T ss_pred hcCHHHHhcCCCCcEEE
Confidence 32 2244455665444
No 491
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.76 E-value=5.6 Score=43.36 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=51.6
Q ss_pred ccccccCC-CchHHHHHHHHHhcCCCeEeecCChHHHHhhhh-C--CCCEEEecCCCHHHHHhc------CccccCEEEE
Q 000968 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-L--DLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1207)
Q Consensus 1010 ~hVIIiG~-GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~-~--g~~vi~GDatd~evL~~A------gI~~A~~VVi 1079 (1207)
.+++|.|. |.+|+.+++.|.+.|..+++++++++..+...+ . ....+.+|.++++-+..+ ...+.|.+|-
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFI 86 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 35777775 889999999999999999999999776654432 2 345778999988754332 1235677765
Q ss_pred ec
Q 000968 1080 TL 1081 (1207)
Q Consensus 1080 at 1081 (1207)
..
T Consensus 87 ~a 88 (249)
T PRK06500 87 NA 88 (249)
T ss_pred CC
Confidence 44
No 492
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=73.71 E-value=73 Score=37.12 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=43.4
Q ss_pred HhhhhhHHHHH-HHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000968 167 AQLNSTMFEEK-AQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVK 245 (1207)
Q Consensus 167 a~~~~~~~e~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1207)
.++|=|.|+.| ||+|++. +-|+-..--|.+| |--+++.+.-|.-.+.-||+|.+-|.-.|-+-|
T Consensus 142 ~~v~V~aF~p~eaq~Iaqa---ilkqse~lIN~Ls------------~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr 206 (372)
T COG3524 142 STVNVTAFDPKEAQKIAQA---ILKQSEKLINQLS------------ERARRDTVRFAEEEVQKAEERVKKASNDLTDYR 206 (372)
T ss_pred eEEEEeecChhhHHHHHHH---HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56788889864 8999874 3455554445444 344555666666677778889988888877655
No 493
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=73.70 E-value=63 Score=38.20 Aligned_cols=73 Identities=23% Similarity=0.193 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHcCccChhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHH
Q 000968 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAF 948 (1207)
Q Consensus 874 ~~~flplFFv~IGm~Idl~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa 948 (1207)
++++=|+.|+-+|...|+..+..++..+++ -....++-+ .+++.+..+|++.+|+..+|..-+.-|-.++.+.
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~~ll-GaaAQ~Gif-~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s 140 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKTLLL-GAAAQFGIF-ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVS 140 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHHHHH-HHHHHHhHH-HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHH
Confidence 578888999999999999999887765432 233344433 4566667779999999999988777776665543
No 494
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=73.69 E-value=7 Score=47.21 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=51.4
Q ss_pred cccccCCCchHHHHHHHHHhcCCCeEeecCChHH-HH----hhh-hCCCCEEEecCCCHHHHHhcCccccCEEEEecCCc
Q 000968 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VA----IGR-ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1011 hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~-ve----~~r-~~g~~vi~GDatd~evL~~AgI~~A~~VViatddd 1084 (1207)
++.++|.|..|..+++.|.+.|+.|++-|..+.. .. .++ ..|+.++.| .+++.+ ..++.||....-+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~~~~~-----~~~d~vv~sp~i~ 73 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LHLEDL-----NNADLVVKSPGIP 73 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEec--CchHHh-----ccCCEEEECCCCC
Confidence 3678999999999999999999999999976442 21 123 358888887 334433 5678888776665
Q ss_pred chhH
Q 000968 1085 GANY 1088 (1207)
Q Consensus 1085 ~~Ni 1088 (1207)
..|-
T Consensus 74 ~~~p 77 (433)
T TIGR01087 74 PDHP 77 (433)
T ss_pred CCCH
Confidence 5554
No 495
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=73.68 E-value=5.5 Score=47.31 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhCCCCEEEecCCCHHHHHhcC-ccccCEEEEecCC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG-AERACAAAITLDT 1083 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~g~~vi~GDatd~evL~~Ag-I~~A~~VViatdd 1083 (1207)
+.+++|+|.|..|+.++..+.+.|+.++++|.+++...... .-.++..|..|++.+.+.- -.+.+.|+...++
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~--ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHh--hhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc
Confidence 45799999999999999999999999999999986532211 1235677778877665442 2357777665554
No 496
>PRK10711 hypothetical protein; Provisional
Probab=73.62 E-value=89 Score=35.28 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=54.5
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhcCCCcchhhHHHHHHHhhccchhhhHHHHHHHHHH
Q 000968 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1207)
Q Consensus 892 ~~L~~~~~~illlllllll~K~l~v~l~~~l~g~~~real~lGL~La~rGe~alVLa~lal~~glIs~el~siLvlvvvl 971 (1207)
..+..+|..++..+.+..+.-+++.++.++++|.+.. +...|.||+...-+...++.+.|-+..-....++++-++
T Consensus 82 ~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~ 157 (231)
T PRK10711 82 HQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGIL 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3444455555554455555566777888888888642 334567888777666666666665533333344444566
Q ss_pred HHHhHHHHHhhh
Q 000968 972 SMALTPWLAAGG 983 (1207)
Q Consensus 972 S~lItPlL~~~~ 983 (1207)
..+++|++.++.
T Consensus 158 Ga~~g~~llk~~ 169 (231)
T PRK10711 158 GAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHc
Confidence 777788887755
No 497
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=73.62 E-value=5.1 Score=53.47 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=57.0
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEeecCCh---------------------HHHHhhhhCCCCEEEecCCCHH-HH
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS---------------------DRVAIGRALDLPVYFGDAGSRE-VL 1066 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~---------------------e~ve~~r~~g~~vi~GDatd~e-vL 1066 (1207)
..+|+|||.|+.|...|..|...|++|+|+|.++ ..++.++..|+.+..+.....+ ++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~ 385 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL 385 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH
Confidence 5679999999999999999999999999999864 1334556778887776543222 34
Q ss_pred HhcCccccCEEEEecCC
Q 000968 1067 HKVGAERACAAAITLDT 1083 (1207)
Q Consensus 1067 ~~AgI~~A~~VViatdd 1083 (1207)
+...-...|+|+++++.
T Consensus 386 ~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 386 EDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHhccccCCEEEEeCCC
Confidence 44433568999999976
No 498
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.60 E-value=3.8 Score=51.38 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=54.7
Q ss_pred ccccccccCCCchHHHHHHHHHhcCCCeEeecCC---------------------hHHHHhhhhCCCCEEEecCCCHH-H
Q 000968 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVR---------------------SDRVAIGRALDLPVYFGDAGSRE-V 1065 (1207)
Q Consensus 1008 lk~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D---------------------~e~ve~~r~~g~~vi~GDatd~e-v 1065 (1207)
....|+|+|.|..|...+..|...|++++++|.. ..+.+.+++.|..+.++.....+ .
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 4567999999999999999999999999999954 23455667788887776433111 1
Q ss_pred HHhcCccccCEEEEecCCc
Q 000968 1066 LHKVGAERACAAAITLDTP 1084 (1207)
Q Consensus 1066 L~~AgI~~A~~VViatddd 1084 (1207)
..... ..+|+|+.+++..
T Consensus 216 ~~~~~-~~~D~Vi~AtG~~ 233 (564)
T PRK12771 216 LEQLE-GEFDAVFVAIGAQ 233 (564)
T ss_pred HHHHH-hhCCEEEEeeCCC
Confidence 11111 2578999998765
No 499
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=73.46 E-value=21 Score=44.12 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=51.2
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEeecCChHHHHhhhhC-CCCEEEecCCCHHHHHhcCccccCEEEEecCCcc
Q 000968 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1207)
Q Consensus 1010 ~hVIIiG~GrvG~~Ia~~L~~~gi~vvVID~D~e~ve~~r~~-g~~vi~GDatd~evL~~AgI~~A~~VViatddd~ 1085 (1207)
.+++|+|.|.+|+.++..|.+.|.++++.++++++.+.+... +..+ ...+.+. .+.++|.||.+++...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-----~~~~~~~--~l~~~DiVInatP~g~ 402 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-----FPLESLP--ELHRIDIIINCLPPSV 402 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-----echhHhc--ccCCCCEEEEcCCCCC
Confidence 368999999999999999999999999999998887765432 2111 1112222 2468999999998764
No 500
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.41 E-value=8 Score=46.20 Aligned_cols=90 Identities=16% Similarity=0.037 Sum_probs=0.0
Q ss_pred cccccccCCCchHHHHHHHHHhcCC-CeEeecCC-------------------hHHHHhhhhC------CCCEEEecCCC
Q 000968 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVR-------------------SDRVAIGRAL------DLPVYFGDAGS 1062 (1207)
Q Consensus 1009 k~hVIIiG~GrvG~~Ia~~L~~~gi-~vvVID~D-------------------~e~ve~~r~~------g~~vi~GDatd 1062 (1207)
..+|+|+|.|..|..+++.|...|+ .++++|.| ..+++.+.+. ++.+..-+..-
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~ 214 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERV 214 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccC
Q ss_pred HHHHHhcCccccCEEEEecCCcchhHHHHHHHHHhC
Q 000968 1063 REVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1207)
Q Consensus 1063 ~evL~~AgI~~A~~VViatddd~~Ni~i~l~aR~l~ 1098 (1207)
.+.-...-+.++|.||.++++...-..+-..+++.+
T Consensus 215 ~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ 250 (376)
T PRK08762 215 TSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG 250 (376)
T ss_pred ChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC
Done!