BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000969
         (1206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
           Entamoeba Histolytica In Complex With Cysteine
 pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
           Entamoeba Histolytica In Complex With Cysteine
          Length = 338

 Score = 33.9 bits (76), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 657 YFGRVSEKIVRVGKN--KSAMKSGNESLGVKLMENAPNDTAVSL----AVKDLQLRFLEP 710
           YF  +S    RVG N    A+K G    G++++E+   +T ++L    AV   ++    P
Sbjct: 49  YFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMP 108

Query: 711 SSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWES 751
           S+M++E   +++  G ++ +    + + GA+   + ++ E+
Sbjct: 109 STMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKEN 149


>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
           Entamoeba Histolytica At 1.86 A Resolution
 pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
           Entamoeba Histolytica At 1.86 A Resolution
          Length = 343

 Score = 33.9 bits (76), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 657 YFGRVSEKIVRVGKN--KSAMKSGNESLGVKLMENAPNDTAVSL----AVKDLQLRFLEP 710
           YF  +S    RVG N    A+K G    G++++E+   +T ++L    AV   ++    P
Sbjct: 50  YFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMP 109

Query: 711 SSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWES 751
           S+M++E   +++  G ++ +    + + GA+   + ++ E+
Sbjct: 110 STMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKEN 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,118,388
Number of Sequences: 62578
Number of extensions: 1257617
Number of successful extensions: 2472
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2469
Number of HSP's gapped (non-prelim): 7
length of query: 1206
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1096
effective length of database: 8,089,757
effective search space: 8866373672
effective search space used: 8866373672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)