Query 000969
Match_columns 1206
No_of_seqs 137 out of 249
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 12:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2955 Uncharacterized conser 100.0 2E-228 4E-233 1923.4 42.8 1049 1-1206 1-1069(1069)
2 COG5043 MRS6 Vacuolar protein 100.0 2.3E-39 5.1E-44 393.0 17.8 302 1-326 2-340 (2552)
3 KOG1809 Vacuolar protein sorti 100.0 4.2E-32 9.2E-37 347.1 17.1 295 1-323 2-324 (1827)
4 PF12624 Chorein_N: N-terminal 99.8 1.9E-19 4.2E-24 172.5 9.4 91 1-96 1-93 (118)
5 PF07544 Med9: RNA polymerase 59.9 20 0.00043 34.0 5.4 54 1153-1206 25-82 (83)
6 PF07106 TBPIP: Tat binding pr 43.3 58 0.0013 33.9 6.3 61 1144-1204 74-137 (169)
7 PRK04406 hypothetical protein; 31.5 1.2E+02 0.0025 28.8 5.6 19 1148-1166 3-21 (75)
8 TIGR00135 gatC glutamyl-tRNA(G 29.1 91 0.002 29.7 4.6 49 1061-1120 1-54 (93)
9 PF03962 Mnd1: Mnd1 family; I 27.7 1.5E+02 0.0034 32.0 6.5 58 1146-1203 73-130 (188)
10 PF14282 FlxA: FlxA-like prote 27.1 2.1E+02 0.0045 28.4 6.8 60 1144-1205 14-73 (106)
11 PF05236 TAF4: Transcription i 26.8 21 0.00046 39.7 0.0 17 922-938 239-255 (264)
12 PF04102 SlyX: SlyX; InterPro 25.9 2.6E+02 0.0056 25.8 6.7 22 1147-1168 2-23 (69)
13 PRK00034 gatC aspartyl/glutamy 20.1 1.5E+02 0.0033 28.1 4.3 50 1060-1120 2-56 (95)
No 1
>KOG2955 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-228 Score=1923.40 Aligned_cols=1049 Identities=53% Similarity=0.822 Sum_probs=987.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCCcccccc---ccCeEEeeccccChhhhhhhcCCCCceEEeEEEeeeEEEEcCcccccccc
Q 000969 1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI 77 (1206)
Q Consensus 1 MESLVa~lLnryLgkYVKNLspDQLnL---sGGdVeL~NLELKedAL~e~L~LP~wL~V~~G~~GkLtLKIP~SWTNLKs 77 (1206)
|||||+++|.++|++|+|||+||||+| +| +++|+|||||+|||++.|+||+||.|+++|||++.|.|| |||||+
T Consensus 1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT 77 (1069)
T KOG2955|consen 1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT 77 (1069)
T ss_pred CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence 999999999999999999999999998 66 999999999999999999999999999999999999999 999999
Q ss_pred ccEEEEEceEEEEeccCCCccccccCCCCCCCCCCCCCCCCchHHhhhcCeEEEEEEEEEEEEeCCCCccCCCCCCCCcE
Q 000969 78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM 157 (1206)
Q Consensus 78 ePVvI~ID~IyLvaep~~~~E~~r~~~~ss~~ass~~~s~yGFitKIIDNLQV~InNIHIRYED~~sa~~~~s~p~hPFa 157 (1206)
+||+|.||+|.++++++++ .+.+++++|.+....+++|||++||++||.++|+.|.|+++..+ |+
T Consensus 78 ~PI~v~iDkl~l~le~~~e---~~~~~gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~ 142 (1069)
T KOG2955|consen 78 EPIVVQIDKLDLVLEENPE---ADVTKGPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA 142 (1069)
T ss_pred cceEEEeeeeeEEeecCcc---ccCCCCCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence 9999999999997766554 44455555655445567899999999999999999999999986 57
Q ss_pred EEEEEeeeEEEecCCCccccccchhhccccCCceEEEEEEEEeccceeeccccccccccccccccccCCCCCCCCCCccc
Q 000969 158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA 237 (1206)
Q Consensus 158 aGITLseLSaqSTDenWqp~dLretr~~s~~kg~ilIFKlLeweSLSI~L~p~~dmf~d~~~~~s~e~sn~r~~~~~~Ry 237 (1206)
++++|++|+++|||+.|+.++|++||++++++|.+++||+++|+.|+|++.+++.|- ..... ...+.|+
T Consensus 143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~~-e~~~~----------~~ap~rL 211 (1069)
T KOG2955|consen 143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSMT-EANLA----------RSAPARL 211 (1069)
T ss_pred eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCchh-hHHHh----------hcCceee
Confidence 999999999999999999999999999999999999999999999999997777652 22111 1355666
Q ss_pred cccCcceeecceeEEEEEEcccccCCCCccceeeeeccccccccChHHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhh
Q 000969 238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA 317 (1206)
Q Consensus 238 Ifg~~rLLkPISGeARITLnK~e~D~~v~~dkl~LILDEI~~vLSd~QYrdlL~fl~SL~~~m~R~~v~pk~qq~~~eaa 317 (1206)
|+ ..|.+|||++|+..|++++..++++|+|+++|+||++|+|++++|+++++.|++|++++||+||
T Consensus 212 it--------~~gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------ 277 (1069)
T KOG2955|consen 212 IT--------EDGKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------ 277 (1069)
T ss_pred ec--------cCCeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence 53 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeecccCCCCCceeeccccccccccCC
Q 000969 318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV 397 (1206)
Q Consensus 318 g~s~~~~~~dhifl~ikd~~f~lell~~sl~~~ras~~~~~~~~~lt~i~igglflrd~fs~ppc~lvqpsm~~~~~~~~ 397 (1206)
|+|+++++.++++.|++||+|+||.||+-||.+.||+|.+.... +
T Consensus 278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L 322 (1069)
T KOG2955|consen 278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L 322 (1069)
T ss_pred ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence 99999999999999999999999999999999999999976555 9
Q ss_pred CcchhhhccCCccccCCcccceeccCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceecc
Q 000969 398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN 477 (1206)
Q Consensus 398 ~vp~fa~~~~p~i~pl~~~~~~~~~~~pl~cl~s~q~~psp~pp~~asqtvi~cqpl~i~lqe~sclrissfladgivv~ 477 (1206)
+||+|+.+|||-|||+++..|+..-+.|.+-||++||+|+|-||+||+.||++|+|+|.|+||+.|+|+++|+++|||||
T Consensus 323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~ 402 (1069)
T KOG2955|consen 323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN 402 (1069)
T ss_pred ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCccceEEEEeecceeeeccCccccchhhhccCccccCCcccceEEeeceecccCccccceecccCCCCceeec
Q 000969 478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL 557 (1206)
Q Consensus 478 ~g~~lpd~s~~s~~f~lke~dltvp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~f~~sp~l~~rll~l~~dpacf~l 557 (1206)
||+++||-++||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.++.|++|+|+||||||+
T Consensus 403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~ 482 (1069)
T KOG2955|consen 403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL 482 (1069)
T ss_pred CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEeecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 000969 558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV 634 (1206)
Q Consensus 558 w~~qpvdasq~kw~~~as~lslslet~~~~~~~~~~---~~~lw~cvel~d~~~e~am~tadg~pl~~vpppggivr~gv 634 (1206)
|+||||++||++|+++|+|+|+..+|..-.+..|.+ +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus 483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~ 562 (1069)
T KOG2955|consen 483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV 562 (1069)
T ss_pred CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence 999999999999999999999999999999999877 99999999999999999999999999999999999999999
Q ss_pred eeecccccccchhhhhHHHHhhhhchhhhHhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 000969 635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN 714 (1206)
Q Consensus 635 ~c~q~~sntsveql~fvl~ly~y~g~v~e~i~~~~~~~~~~~~~~~s~~~~l~~~vp~dtav~l~~~~l~~~fles~~~~ 714 (1206)
+|++|.+-+++||+|||+|+|+|||+++|+|+.+++.+|. +.-+.++++.++||+||||.|..|+||.+||+++-+.
T Consensus 563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~ 639 (1069)
T KOG2955|consen 563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS 639 (1069)
T ss_pred ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred cCCCceeEEecCceeEEEeccccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCcceeEEEE
Q 000969 715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW 793 (1206)
Q Consensus 715 ~eg~plvqf~g~dl~~~vthrtlgga~~vss~l~w~~v~v~cv~~e~~~~~en~~~~~~~~~~-~~~~~~g~p~lr~vfw 793 (1206)
++|||++|+.+.++..++||||++||++||++++|+.++++||++..++.|||.+ ++ ..+..+|.-.+|.+||
T Consensus 640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~ 713 (1069)
T KOG2955|consen 640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW 713 (1069)
T ss_pred ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence 9999999999999999999999999999999999999999999999999999988 34 5677889999999999
Q ss_pred EecCCcccccCCcCCCCeeeeeeeEEeeCcCCCccccceeeEEEEeeEEecCchhhHHHHHhHhcccCCCCCCCcchhhh
Q 000969 794 VHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKG 873 (1206)
Q Consensus 794 v~~~~~~~~~~~~~~~pfldi~~~hvip~~~~d~e~hsl~v~a~vsgvrlgggm~y~e~llhrfgilgpdggpg~gl~k~ 873 (1206)
+.|+++....+...+ ||+||+++||||+.|.|++|||.+++|--
T Consensus 714 ~tNg~~~~~S~dtl~-~f~~is~~~vi~l~e~~~~~~S~~i~~y~----------------------------------- 757 (1069)
T KOG2955|consen 714 VTNGRHDEHSGDTLT-PFLDISITHVIPLSEKDMECHSVSIVAYG----------------------------------- 757 (1069)
T ss_pred ecCCCCCCcccccee-ecccceeEEEeehhhcccccceeeehhcC-----------------------------------
Confidence 999988877777654 99999999999999999999999987631
Q ss_pred hcccCCCccccccccCCCcccccCCCCcc-cCCCCCcccCCCCCceeeEEEeehhhhhccChhhhhhhccc-CCcccccc
Q 000969 874 IEHLSEGPLSKLFKASPLSVEDVGEGRNS-LDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCL-SSQEVGRE 951 (1206)
Q Consensus 874 l~~ls~gpl~~lfk~s~~~~~d~~~~~~~-~~~~~~~~~l~~pd~~dv~i~l~dwlfaleg~~~~~~~~~~-~~~~~~re 951 (1206)
.+ ..+-+|++||+.|||+||.|+||||+|||||.+.++.| . ++|++|||
T Consensus 758 ---------------------------~~~~~~l~g~l~l~~~~~i~v~v~lr~~~~al~~~~~~~~~--~l~~e~i~~~ 808 (1069)
T KOG2955|consen 758 ---------------------------TPGNWNLDGFLHLGRPDDIDVSVELRDWLFALEGREGVGTR--ILNNEDIGRE 808 (1069)
T ss_pred ---------------------------CcchhccccceeecCCcceeeeEeehhhHHHhhcCcccccc--cccccccCcc
Confidence 11 22334899999999999999999999999999999988 5 88999999
Q ss_pred cceeeeeeceEEEeeccCCCC------CCCCCcccCCceEEEEEeecccccccccccC-CCCCCCCCCCcccccccccce
Q 000969 952 ERSWHTTFQSVRAKAKSIPRQ------GKPYGTQRHPVELVTVSVDGLQTLKPQVQKD-LQPGVLPANGIKESAGSSGGI 1024 (1206)
Q Consensus 952 e~~wh~tf~~l~~~a~~~~~~------~~~~~~~~~p~~~~t~~~eglq~~kp~~~~~-~~~~~l~~~~~~~~~~~~~g~ 1024 (1206)
+||||+||+..+|.||++|+. ++++..|+||+..+.|.+||||+.||++||| ..+|.+.+||+.|+.+++||+
T Consensus 809 ~~~~~~~~~~~~~~ak~~~~~~d~n~~~~~~~~h~~~~~s~~v~~~~l~~~~p~~~k~~~~~n~~~~~~~~~~~~~h~g~ 888 (1069)
T KOG2955|consen 809 ERCWHTNFRTFRVIAKSTPKNVDSNGTENQCDAHKYPVDSIIVSVEGLQTVKPQMQKGTDSCNGLSTNGVHENGQMHGGV 888 (1069)
T ss_pred ccccccccccceEeecccccccccccchhhhhcccCCCceeEEEcccCcccChHhhcCccccccccccchhhcchhccCe
Confidence 999999999999999999995 7888999999999999999999999999999 789999999999999999999
Q ss_pred eeEEEEEeeccc-cccccchhheeceeccccCceEEeeehHHHHHHHHHhHhHhhhhhhhHHHHHhhhhhccccchhhHH
Q 000969 1025 NVEIRMVISEDN-AENEMDKWMVENLKFSVKEPIEAIVTKDEVEHLAFLCKSEVESMGRIAAGVLRLLKLEKTIGQSAID 1103 (1206)
Q Consensus 1025 ~~e~~lv~~e~~-~~~~~~~w~~~~~k~sv~~pie~~~tk~e~~~l~~lckse~~a~~ri~ag~lrllkle~s~gq~~id 1103 (1206)
+.|..++..|+. ++|...+|+.|.+||+|+||+||++||||+||++||||+|||+||||.|||+|.+|||.++||++.+
T Consensus 889 ~~e~~~~~~~~ks~~d~~~~~~~~s~~~~~~~~~~~v~t~d~~~~~~~l~~s~~~~~~~~v~~v~~~~~l~~~~~~~t~n 968 (1069)
T KOG2955|consen 889 NIEANIVASEDKSVHDDLLNWVAESLKFSVKQPVEAVVTKDELQHLTFLCKSEIDAMGRIVAGVLRVLKLEESIGQATLN 968 (1069)
T ss_pred ecccccccccccccchhhhhhhhhhhhhhhcCcchhhcccccccCeeeeehhhhhhhhhHHHHHHHHHhhhhhhhhhhhh
Confidence 999999999998 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCccccCccccCCCCCCCCCCCCCccc-ccC--CcccchhhhHHHHHHHhhhhHHHHHHHHhhccCCccchh
Q 000969 1104 QLGNLGSGGFDKIFSPHLSRRSSGQSIGQFSLENS-VTK--SSHTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSD 1180 (1206)
Q Consensus 1104 ql~~lg~~g~d~~f~p~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~ 1180 (1206)
|++|+|++||||+|+|.-||.++|-+. |.+..+ ++- +-..++|+|++++|+|.|+.+|||.++++|+..+|++..
T Consensus 969 ~~~~~~~~~~~~~~~~~as~ag~pk~~--p~~a~l~~~~~~~~ra~~~~ti~si~~~sm~le~~~~a~~sd~~~~~~~~~ 1046 (1069)
T KOG2955|consen 969 QLSNLGSEGFDKMFSPKASRAGSPKSS--PFAASLDSMREISLRANLESTISSIEEASMELEAKCSALVSDLNDSESSAK 1046 (1069)
T ss_pred hhhcccCCCcccccCccccccCCCCCC--CccchhHHHHHHHhhhhhhcchhhhhhHHHHHHHHHhhhcchhhhhhhhhc
Confidence 999999999999999998888888887 544422 111 112289999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000969 1181 HLASINQLREKIESMQSLLTQLRSQI 1206 (1206)
Q Consensus 1181 ~~~~~~~l~~~le~mq~l~~~lr~~i 1206 (1206)
| .+.+.|++|+.|+|+++||+||
T Consensus 1047 ~---~n~~~~~~~s~~s~~a~~~~q~ 1069 (1069)
T KOG2955|consen 1047 H---ANELKQKLESLQSLMAKLRTQI 1069 (1069)
T ss_pred c---hhhHHHHHHHHHHHHhhhhcCC
Confidence 9 7889999999999999999997
No 2
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-39 Score=393.03 Aligned_cols=302 Identities=16% Similarity=0.237 Sum_probs=234.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCcccccc--ccCeEEeeccccChhhhhhhcCCCCceEEeEEEeeeEEEEcCccccccccc
Q 000969 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (1206)
Q Consensus 1 MESLVa~lLnryLgkYVKNLspDQLnL--sGGdVeL~NLELKedAL~e~L~LP~wL~V~~G~~GkLtLKIP~SWTNLKse 78 (1206)
+|+|+|++|||+||.||+|||+.|||+ |||+|.|+||+||++||+ .|+|| ++|++|.||+|+|+|| |++||++
T Consensus 2 LegLlanlLNRlLGsYVENfD~~QLnvgvw~GdVsl~NLriK~sald-kL~lp--i~V~sgligtLtl~iP--WsSLknK 76 (2552)
T COG5043 2 LEGLLANLLNRLLGSYVENFDTKQLNVGVWGGDVSLHNLRIKPSALD-KLGLP--IEVTSGLIGTLTLEIP--WSSLKNK 76 (2552)
T ss_pred hhHHHHHHHHHHHHHHHhhcCccceeEEEecceeEEEeeeecHHHHh-hcCCC--eEEeecceeeEEEEee--hHHhcCC
Confidence 699999999999999999999999998 888999999999999999 59999 9999999999999999 9999999
Q ss_pred cEEEEEceEEEEeccCCCc-----ccccc----------------CCCCCCCCCCCCCCCCch----HHhhhcCeEEEEE
Q 000969 79 PIVLQVDRLDLVLEENPDK-----DACNY----------------ASSTPTPTGSSKGSGYGF----ADKIADGMTLQVN 133 (1206)
Q Consensus 79 PVvI~ID~IyLvaep~~~~-----E~~r~----------------~~~ss~~ass~~~s~yGF----itKIIDNLQV~In 133 (1206)
||+|.|++||+++.|.... |..++ +....+..+++.+.+.+| ++|+|||+||.|+
T Consensus 77 PVeIyIedi~llis~~~~~~~~~ee~p~~~~~lk~rq~~~wE~~~~~~~~ssss~~~~~~q~F~EsLitk~iDniqi~Ie 156 (2552)
T COG5043 77 PVEIYIEDIYLLISPQAKNSLTREELPQSQQALKQRQLDSWEILRETLEESSSSPNISRKQSFIESLITKLIDNIQIYIE 156 (2552)
T ss_pred CeEEEEEeeEEEechhhccccccccChHHHHHHHHHHHHHHHHhHHhhhhcccCccccccchHHHHHHHhcccceEEEEE
Confidence 9999999999999886421 11100 000111122233345566 8999999999999
Q ss_pred EEEEEEEeCCCCccCCCCCCCCcEEEEEEeeeEEEecCCCccccccchhhccccCCceEEEEEEEEeccceeeccccccc
Q 000969 134 TVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDM 213 (1206)
Q Consensus 134 NIHIRYED~~sa~~~~s~p~hPFaaGITLseLSaqSTDenWqp~dLretr~~s~~kg~ilIFKlLeweSLSI~L~p~~dm 213 (1206)
+|||||||..+ .....|+++|+|+.+|++.|||++|.+.++.... .++||+++++.++|||.+.+..
T Consensus 157 dIhlrfed~~s-----~~~~g~ysfgltl~slra~std~~wte~fv~t~s--------~~i~kL~tl~~f~iy~~e~~pc 223 (2552)
T COG5043 157 DIHLRFEDNLS-----ADLEGPYSFGLTLYSLRATSTDASWTEYFVSTDS--------SCIHKLITLDYFSIYWCEISPC 223 (2552)
T ss_pred eeEEEEecCcc-----cccccceeeccEeeeEEEEecCccchhhhhhcch--------hhhhheeeeeeeEEeeccCccc
Confidence 99999999764 2455699999999999999999999999987643 5899999999999999643333
Q ss_pred cccccccccccC--CCCCCCCCCccccccCcceeecceeEEEEEEcccccCCCCccceeeeeccccccccChHHHHHHHH
Q 000969 214 FADGSIARSNEG--ASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLR 291 (1206)
Q Consensus 214 f~d~~~~~s~e~--sn~r~~~~~~RyIfg~~rLLkPISGeARITLnK~e~D~~v~~dkl~LILDEI~~vLSd~QYrdlL~ 291 (1206)
+.+-.....-+. .-..+..+++ .+|+|+|++|.|++++||-.++.-+... .++.++++.+.|+|.||.++|+
T Consensus 224 I~~~did~~Lenfq~~i~e~~~~~-----neYilkpVrgtakvsinklpt~Eipr~~-~q~s~~ef~~sl~d~~~~~~l~ 297 (2552)
T COG5043 224 ITTEDIDSYLENFQPMIAEKSPAY-----NEYILKPVRGTAKVSINKLPTDEIPRLR-GQLSVEEFSISLSDHMYYSLLG 297 (2552)
T ss_pred cchhhHHHHHHHHHHHHHHhhhhh-----hheeecccceeeEeeeccCCchHHhhHh-hccccccCCceecHHHHHHHHH
Confidence 222211111000 0000001111 2467999999999999987755434333 3789999999999999999999
Q ss_pred HHHHHHHhhc-------CCCCCccc-hhhhhhhhccceeeEEe
Q 000969 292 FLSGLYVCLN-------RDDVDLTT-QQLSTEAAGRSLVSIVV 326 (1206)
Q Consensus 292 fl~SL~~~m~-------R~~v~pk~-qq~~~eaag~s~~~~~~ 326 (1206)
.+..++..|. |..-.|++ +.+|...+++-++..+|
T Consensus 298 vl~~lQ~vm~~~kf~k~r~~~~~~e~plE~fKyi~~~vl~~ih 340 (2552)
T COG5043 298 VLDYLQVVMKQQKFLKYRPKSTPKEKPLEWFKYIILVVLDSIH 340 (2552)
T ss_pred HHHHHHHHHHHHhHhhhccccccccChHHHHHhhheeecCHHH
Confidence 9999999987 66667777 89999997766665554
No 3
>KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-32 Score=347.09 Aligned_cols=295 Identities=17% Similarity=0.206 Sum_probs=229.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCcccccc--ccCeEEeeccccChhhhhhhcCCCCceEEeEEEeeeEEEEcCccccccccc
Q 000969 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (1206)
Q Consensus 1 MESLVa~lLnryLgkYVKNLspDQLnL--sGGdVeL~NLELKedAL~e~L~LP~wL~V~~G~~GkLtLKIP~SWTNLKse 78 (1206)
+|++++++|||+||.||+||+++|++| |||+|+|+||++|++||++ |++| ++|+.|++|+++++|| |+||+++
T Consensus 2 le~~v~~lLnr~LG~yv~nld~~QL~lgIw~GdV~l~nL~ik~~aL~~-L~~P--~~v~~g~ig~l~L~IP--w~sL~~~ 76 (1827)
T KOG1809|consen 2 LESLVADLLNRFLGDYVENLDRSQLNLGIWGGDVVLSNLQIKESALSK-LDLP--FEVKSGLIGTLTLKIP--WKSLYNK 76 (1827)
T ss_pred cHHHHHHHHHHHhhhcccCCCCCcceEEEecceeEeechhhCHHHHhc-cCCC--eEEeeeeeeeEEEecc--chhcccC
Confidence 589999999999999999999999998 8889999999999999996 9999 8999999999999999 9999999
Q ss_pred cEEEEEceEEEEeccCCCcc-----ccccC------------CCCC--C-CCCCCCC-CCCchHHhhhcCeEEEEEEEEE
Q 000969 79 PIVLQVDRLDLVLEENPDKD-----ACNYA------------SSTP--T-PTGSSKG-SGYGFADKIADGMTLQVNTVNL 137 (1206)
Q Consensus 79 PVvI~ID~IyLvaep~~~~E-----~~r~~------------~~ss--~-~ass~~~-s~yGFitKIIDNLQV~InNIHI 137 (1206)
||++.|++||+++.|.+..- +.+.. .+.. . ..++.++ ...+++++|++|+|+.|.|||+
T Consensus 77 pv~~~i~~i~~l~~p~s~~~~~~~~~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~F~e~lit~ii~nlqv~isniHl 156 (1827)
T KOG1809|consen 77 PVEINIEDIYLLVVPLSNVKYDPESEAKLSFELKTEYLERIEEAKKKRTEPDQEKTDTFGESLITQIIFNLQVSISNIHL 156 (1827)
T ss_pred ceEEEEeeeeeEeecccccccCchhhhhHHHHHHHhhhhhHHHHhhhcccccccccchHHHHHHHHHHhhccceeEEEEE
Confidence 99999999999999975311 00000 0000 0 0011111 1124589999999999999999
Q ss_pred EEEeCCCCccCCCCCCCCcEEEEEEeeeEEEecCCCccccccchhhccccCCceEEEEEEEEeccceeeccccccccccc
Q 000969 138 LLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADG 217 (1206)
Q Consensus 138 RYED~~sa~~~~s~p~hPFaaGITLseLSaqSTDenWqp~dLretr~~s~~kg~ilIFKlLeweSLSI~L~p~~dmf~d~ 217 (1206)
||||... ++|++|+++.+++++|||++|.|+....+. ..+||++.++.+++||+...+|+...
T Consensus 157 r~ed~~~---------~~fs~g~~l~~l~~~t~d~~w~~~~~~~~~--------~~~~kl~~l~~~~~y~n~~~~~~~~~ 219 (1827)
T KOG1809|consen 157 RYEDEIT---------DGFSFGITLPELSAVTTDEEWTPCLSDQTG--------KIIYKLVTLSGLAIYWNSCSEMSSQS 219 (1827)
T ss_pred ecccccc---------cceeeeeeehhhhhhhcccccccccccccc--------ceEEEEEEeccccccccccchhhcCC
Confidence 9999863 249999999999999999999999887432 48899999999999999766665544
Q ss_pred cccccc---c-CCCCCCCCCCccccccCcceeecceeEEEEEEccccc-CCCCccceeeeeccccccccChHHHHHHHHH
Q 000969 218 SIARSN---E-GASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTEL-NSPLGLEVQLHVTEAVCPALSEPGLRALLRF 292 (1206)
Q Consensus 218 ~~~~s~---e-~sn~r~~~~~~RyIfg~~rLLkPISGeARITLnK~e~-D~~v~~dkl~LILDEI~~vLSd~QYrdlL~f 292 (1206)
...... . ..+.+..+.+++|| ++|+++.|++++||... +...+.-.+.+.++++.+++++.||.+++.+
T Consensus 220 ~~~~~~~~~~~i~~~~~~~~gy~~i------~~pi~~~a~l~~~~~~~~~~~iP~~~~~~~~~~~~~~~~~~qy~~~~~l 293 (1827)
T KOG1809|consen 220 DPDESLDFKQRIVNFRVVPPGYNYI------LKPISGNAKLKQNRVPTLEFSIPKIDLNVEMHAEALTFSDAQYDDIMEL 293 (1827)
T ss_pred CHHHHhhHhhhhcccccCccccceE------EEEecccccccccccccccccCCccccccchhhhheeechhhhhhHHHH
Confidence 322111 1 12333444556765 89999999999996444 4233333357899999999999999999999
Q ss_pred HHHHHHhhcCCCCCccchhhhhhhhccceee
Q 000969 293 LSGLYVCLNRDDVDLTTQQLSTEAAGRSLVS 323 (1206)
Q Consensus 293 l~SL~~~m~R~~v~pk~qq~~~eaag~s~~~ 323 (1206)
+.++++.+.-..-....+..|...|...++.
T Consensus 294 ~~~v~~~~~~~~~~k~~~~~W~~~~~~~~l~ 324 (1827)
T KOG1809|consen 294 LESVERVKTNLPYRKYRPRLWWKYAIQFVLE 324 (1827)
T ss_pred HHHHHHHHhhhhhhhcchHHHHHHHHHHHhh
Confidence 9999888762222222277999998887776
No 4
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=99.79 E-value=1.9e-19 Score=172.47 Aligned_cols=91 Identities=27% Similarity=0.578 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCCcccccc--ccCeEEeeccccChhhhhhhcCCCCceEEeEEEeeeEEEEcCccccccccc
Q 000969 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (1206)
Q Consensus 1 MESLVa~lLnryLgkYVKNLspDQLnL--sGGdVeL~NLELKedAL~e~L~LP~wL~V~~G~~GkLtLKIP~SWTNLKse 78 (1206)
+|++++.+|++|||.|++|++++|+++ ++|+++|+||+||+++|+. ++|| +.|++|+||+++++|| |++|.++
T Consensus 1 fe~~v~~~L~~~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~-~~lP--~~v~~g~i~~l~i~IP--w~~l~~~ 75 (118)
T PF12624_consen 1 FESLVSSLLNKYLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNN-LGLP--IEVKSGSIGKLRIKIP--WTSLWSK 75 (118)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcC-cCCC--eEEeEEEeeeEEEEEE--hHHhCCC
Confidence 589999999999999999999999986 5559999999999999985 8999 9999999999999999 9999999
Q ss_pred cEEEEEceEEEEeccCCC
Q 000969 79 PIVLQVDRLDLVLEENPD 96 (1206)
Q Consensus 79 PVvI~ID~IyLvaep~~~ 96 (1206)
||+|.|++|++++.|...
T Consensus 76 pv~i~I~~v~l~~~~~~~ 93 (118)
T PF12624_consen 76 PVVIEIEDVFLVLKPKDQ 93 (118)
T ss_pred CEEEEEeeEEEEEEECCc
Confidence 999999999999998764
No 5
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.86 E-value=20 Score=33.97 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=41.5
Q ss_pred HHHHHhhhhHH---HHHHHHhhccC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000969 1153 SLEEAVSDSQA---KCAALVTNLGS-TEYSSDHLASINQLREKIESMQSLLTQLRSQI 1206 (1206)
Q Consensus 1153 ~le~a~~~sqa---~c~~l~~~~~~-~e~s~~~~~~~~~l~~~le~mq~l~~~lr~~i 1206 (1206)
.++.++..-+. +|.++|..+.. ..+-....+.|++|.++++.-+.+|.++|+.+
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444443 57778888776 67777777899999999999999999999864
No 6
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.31 E-value=58 Score=33.91 Aligned_cols=61 Identities=25% Similarity=0.405 Sum_probs=48.9
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHHHhhccCCc---cchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000969 1144 HTSLESTLTSLEEAVSDSQAKCAALVTNLGSTE---YSSDHLASINQLREKIESMQSLLTQLRS 1204 (1206)
Q Consensus 1144 ~~~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e---~s~~~~~~~~~l~~~le~mq~l~~~lr~ 1204 (1206)
...+...+..|++.+.+.++.|..|-+.+..-. +...-.+.|.+|.++++.|++=|..||.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447778899999999999999998887776622 2334556799999999999999999985
No 7
>PRK04406 hypothetical protein; Provisional
Probab=31.50 E-value=1.2e+02 Score=28.80 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=11.1
Q ss_pred hhhHHHHHHHhhhhHHHHH
Q 000969 1148 ESTLTSLEEAVSDSQAKCA 1166 (1206)
Q Consensus 1148 e~t~~~le~a~~~sqa~c~ 1166 (1206)
|+|+..||+-|.+.+.|.+
T Consensus 3 ~~~~~~le~Ri~~LE~~lA 21 (75)
T PRK04406 3 EKTIEQLEERINDLECQLA 21 (75)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4556666666666665544
No 8
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=29.05 E-value=91 Score=29.70 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=37.6
Q ss_pred eehHHHHHHHHHhH-----hHhhhhhhhHHHHHhhhhhccccchhhHHhhccCCCCCCccccCcc
Q 000969 1061 VTKDEVEHLAFLCK-----SEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPH 1120 (1206)
Q Consensus 1061 ~tk~e~~~l~~lck-----se~~a~~ri~ag~lrllkle~s~gq~~idql~~lg~~g~d~~f~p~ 1120 (1206)
+||++++||+.|++ .|++.+..=...|+. -+++|.++-.+|.+-+++|.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~-----------~~~~L~~vdt~~v~p~~~~~ 54 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILG-----------FVEQLNEVDTENVEPMTHPL 54 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-----------HHHHHhcCccCCCCcccCcc
Confidence 58999999999987 456655555555554 46788899999999888774
No 9
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.66 E-value=1.5e+02 Score=32.02 Aligned_cols=58 Identities=14% Similarity=0.303 Sum_probs=40.1
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLR 1203 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr 1203 (1206)
.+.+++..+++.+.+.++++.+.-..-..++.-...++++.+|+++++.++.=+.+++
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655445555566778889999999888887776553
No 10
>PF14282 FlxA: FlxA-like protein
Probab=27.11 E-value=2.1e+02 Score=28.41 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=46.2
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000969 1144 HTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQ 1205 (1206)
Q Consensus 1144 ~~~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~~ 1205 (1206)
.....+.+..|+.-|...+.+..+|-.+-...+.... .-+..|+.+|..+++=+.+|..+
T Consensus 14 ~~~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 14 SGSSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455899999999999999999999887443433333 35788888998888888877653
No 11
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=26.80 E-value=21 Score=39.75 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=0.0
Q ss_pred EEeehhhhhccChhhhh
Q 000969 922 VELKDWLFALEGAQEME 938 (1206)
Q Consensus 922 i~l~dwlfaleg~~~~~ 938 (1206)
|+||||||+||.--.+.
T Consensus 239 I~lrD~l~~LE~e~~~~ 255 (264)
T PF05236_consen 239 ITLRDLLFVLERERRGS 255 (264)
T ss_dssp -----------------
T ss_pred eehhhhHHHHhhCCcch
Confidence 99999999999755443
No 12
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.90 E-value=2.6e+02 Score=25.80 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHhhhhHHHHHHH
Q 000969 1147 LESTLTSLEEAVSDSQAKCAAL 1168 (1206)
Q Consensus 1147 ~e~t~~~le~a~~~sqa~c~~l 1168 (1206)
+|.-|..||..+.--+.-+..|
T Consensus 2 le~Ri~~LE~~la~qe~~ie~L 23 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEEL 23 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555444
No 13
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.15 E-value=1.5e+02 Score=28.12 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=37.1
Q ss_pred eeehHHHHHHHHHhHh-----HhhhhhhhHHHHHhhhhhccccchhhHHhhccCCCCCCccccCcc
Q 000969 1060 IVTKDEVEHLAFLCKS-----EVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPH 1120 (1206)
Q Consensus 1060 ~~tk~e~~~l~~lcks-----e~~a~~ri~ag~lrllkle~s~gq~~idql~~lg~~g~d~~f~p~ 1120 (1206)
.+||++++||+.|++= |++.+..=...|+. -+++|.++-.+|.+-+++|.
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~-----------~~~~l~~vd~~~vep~~~~~ 56 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLNKILD-----------FVEQLNEVDTEGVEPTTHPL 56 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-----------HHHHHhhcccCCCCcccCcc
Confidence 4799999999999874 55555555555554 45777788888888888773
Done!