Query 000969
Match_columns 1206
No_of_seqs 137 out of 249
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lw1_A ABC transporter ATP-bin 31.8 1.1E+02 0.0038 27.9 7.0 56 1146-1202 19-75 (89)
2 2w6a_A ARF GTPase-activating p 31.4 1.4E+02 0.0048 26.5 7.0 51 1149-1205 13-63 (63)
3 4b6x_A AVRRPS4, avirulence pro 30.4 62 0.0021 30.2 4.9 50 1152-1202 25-74 (90)
4 3h0l_C Glutamyl-tRNA(Gln) amid 24.4 77 0.0026 29.3 4.6 49 1061-1120 2-55 (94)
5 3ip4_C Aspartyl/glutamyl-tRNA( 23.0 1E+02 0.0035 28.8 5.1 50 1060-1120 3-57 (100)
6 2dfs_A Myosin-5A; myosin-V, in 22.1 59 0.002 41.6 4.4 56 1149-1206 984-1039(1080)
7 3tnu_B Keratin, type II cytosk 19.8 89 0.0031 30.2 4.2 57 1146-1204 40-96 (129)
8 3swf_A CGMP-gated cation chann 19.7 2.4E+02 0.0082 25.9 6.5 49 1146-1203 4-52 (74)
9 3tnu_A Keratin, type I cytoske 18.6 1.1E+02 0.0037 29.8 4.5 57 1146-1204 42-98 (131)
10 3fav_B ESAT-6, 6 kDa early sec 18.3 2.1E+02 0.0072 25.0 6.0 59 1146-1205 16-74 (94)
No 1
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.83 E-value=1.1e+02 Score=27.88 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=42.4
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCcc-chhhHHHHHHHHHHHHHHHHHHHHH
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEY-SSDHLASINQLREKIESMQSLLTQL 1202 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~-s~~~~~~~~~l~~~le~mq~l~~~l 1202 (1206)
.....+..||..|...+++.++|-.+|...+- +..+ +.+..|.++++..+.-|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~-~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPH-EQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999988653 3344 67888888888877766554
No 2
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=31.41 E-value=1.4e+02 Score=26.53 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=40.1
Q ss_pred hhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000969 1149 STLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQ 1205 (1206)
Q Consensus 1149 ~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~~ 1205 (1206)
+++-++-.|+..|+||...|+.-=. .--++++.++.+|.++|+-=.+||.|
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~------~ls~Elr~mQ~~lq~LQsen~~Lr~q 63 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNS------SLSDELRKLQREIHKLQAENLQLRQP 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhH------hhhHHHHHHHHHHHHHHhhhhhhccC
Confidence 3456778899999999998875321 12267999999999999999999975
No 3
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=30.40 E-value=62 Score=30.25 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=42.2
Q ss_pred HHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000969 1152 TSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQL 1202 (1206)
Q Consensus 1152 ~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~l 1202 (1206)
..|.+||.|-|...+.|-.+|-..++...+ ++|++-+++|+.-.+=|..|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNp-aeIA~~~~~L~qAraDL~~l 74 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANP-AEIANTSQQLRHARADLADL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCH-HHHHhHHHHHHHHHHHHHHH
Confidence 579999999999999999999998888888 89999998888665544443
No 4
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=24.44 E-value=77 Score=29.29 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=37.1
Q ss_pred eehHHHHHHHHHhH-----hHhhhhhhhHHHHHhhhhhccccchhhHHhhccCCCCCCccccCcc
Q 000969 1061 VTKDEVEHLAFLCK-----SEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPH 1120 (1206)
Q Consensus 1061 ~tk~e~~~l~~lck-----se~~a~~ri~ag~lrllkle~s~gq~~idql~~lg~~g~d~~f~p~ 1120 (1206)
+|+++++|++.|+| .|++.+..=..+||. -++||..+-.+|..-++.|-
T Consensus 2 i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~-----------~ve~L~evDt~~VeP~~~~~ 55 (94)
T 3h0l_C 2 VDREWVLKIAKLARLELKEEEIEVFQKQLSDILD-----------FIDQLKELDTENVEPYIQEF 55 (94)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-----------HTTTGGGSCCTTCCCCCCCC
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-----------HHHHHhccCCCCcCcccCcc
Confidence 58999999999998 455555544445543 46789999999999888774
No 5
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=23.02 E-value=1e+02 Score=28.84 Aligned_cols=50 Identities=28% Similarity=0.388 Sum_probs=37.9
Q ss_pred eeehHHHHHHHHHhHh-----HhhhhhhhHHHHHhhhhhccccchhhHHhhccCCCCCCccccCcc
Q 000969 1060 IVTKDEVEHLAFLCKS-----EVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPH 1120 (1206)
Q Consensus 1060 ~~tk~e~~~l~~lcks-----e~~a~~ri~ag~lrllkle~s~gq~~idql~~lg~~g~d~~f~p~ 1120 (1206)
.+|+++++|++.|+|= |++.+..=..+||. -++||..+-.+|..-++.|-
T Consensus 3 ~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~~Il~-----------~ve~L~evDt~~VeP~~~~~ 57 (100)
T 3ip4_C 3 KVTREEVEHIANLARLQISPEETEEMANTLESILD-----------FAKQNDSADTEGVEPTYHVL 57 (100)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-----------HHGGGGGSCCTTCCCCSCCS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-----------HHHHHhhcCCCCCCcccccc
Confidence 4799999999999984 44555444444443 57899999999999888775
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.15 E-value=59 Score=41.56 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=33.9
Q ss_pred hhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000969 1149 STLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQI 1206 (1206)
Q Consensus 1149 ~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~~i 1206 (1206)
..+.+||+.+.+.+..+.++..+...-|...+.+. .+|++++.+|+....+||.|+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~--~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK--HETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556655555544444433332 367788888888888888763
No 7
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=19.77 E-value=89 Score=30.21 Aligned_cols=57 Identities=14% Similarity=0.403 Sum_probs=40.0
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRS 1204 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~ 1204 (1206)
.+-.++.+|+..+...+..+++|=..+...|..-. ..+++++.+|..+..=|.++|.
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~--~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE--LALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHH
Confidence 56677888888888888888888777776655332 2566677777666666666664
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=19.67 E-value=2.4e+02 Score=25.93 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=37.5
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLR 1203 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr 1203 (1206)
.+|..+..||..+-..|.|-+.|+.+..++ =.+|.|+|..+...+..++
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ss---------Q~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESM---------QQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcccC
Confidence 689999999999999999999999876432 2456667766666665544
No 9
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=18.58 E-value=1.1e+02 Score=29.78 Aligned_cols=57 Identities=28% Similarity=0.311 Sum_probs=39.4
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRS 1204 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~ 1204 (1206)
.+-.++.+|+..+...+..+++|=..+...|..-. ..+++++.+|..+..=|.++|.
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~--~~l~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC--MQLAQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888778888888777766555332 2566666666666666666654
No 10
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=18.28 E-value=2.1e+02 Score=25.03 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=42.0
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQ 1205 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~~ 1205 (1206)
.+..+...|++.+.+.+...+.|...-.. +.+..+-+...+..+..+.|..+|.+++..
T Consensus 16 ~~~~~~~~i~~~l~~l~~~v~~l~~~W~G-~A~~af~~~~~~w~~~~~~~~~~L~~i~~~ 74 (94)
T 3fav_B 16 AIQGNVTSIHSLLDEGKQSLTKLAAAWGG-SGSEAYQGVQQKWDATATELNNALQNLART 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGGTC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555443 355666688899999999999999988764
Done!