Query 000969
Match_columns 1206
No_of_seqs 137 out of 249
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 04:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f2ac1 a.137.12.1 (C:3-94) Gl 31.3 27 0.002 29.7 5.0 49 1061-1120 2-55 (92)
2 d1iyjb5 b.40.4.3 (B:2980-3117) 20.7 7.5 0.00055 36.8 -0.8 41 421-461 62-106 (138)
3 d1kt1a3 d.26.1.1 (A:139-253) F 19.0 21 0.0016 30.8 1.9 49 868-927 62-112 (115)
4 d1s35a2 a.7.1.1 (A:1169-1273) 15.2 1.3E+02 0.0097 24.5 6.1 60 1143-1204 41-100 (105)
5 d1lrza1 a.2.7.4 (A:245-309) Me 15.2 1.2E+02 0.009 24.8 5.6 50 1150-1199 4-53 (65)
6 d1seta1 a.2.7.1 (A:1-110) Sery 12.9 1.3E+02 0.0097 25.7 5.6 58 1146-1203 32-91 (110)
7 d1wa8b1 a.25.3.1 (B:602-695) E 10.5 2.8E+02 0.02 22.8 6.7 59 1146-1205 16-74 (94)
8 d1pn0a3 d.16.1.2 (A:241-341) P 9.8 72 0.0052 28.2 2.6 36 602-637 18-53 (101)
9 d2i76a2 c.2.1.6 (A:2-154) Hypo 8.9 1.2E+02 0.0085 26.4 3.8 53 326-380 56-111 (153)
10 d1s35a1 a.7.1.1 (A:1063-1168) 8.7 2.3E+02 0.017 22.8 5.4 30 1144-1173 41-70 (106)
No 1
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=31.35 E-value=27 Score=29.75 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=40.1
Q ss_pred eehHHHHHHHHHhH-----hHhhhhhhhHHHHHhhhhhccccchhhHHhhccCCCCCCccccCcc
Q 000969 1061 VTKDEVEHLAFLCK-----SEVESMGRIAAGVLRLLKLEKTIGQSAIDQLGNLGSGGFDKIFSPH 1120 (1206)
Q Consensus 1061 ~tk~e~~~l~~lck-----se~~a~~ri~ag~lrllkle~s~gq~~idql~~lg~~g~d~~f~p~ 1120 (1206)
+||++++||+.|+| .|++.+..=...||. -++||..+-.+|.+-++.|-
T Consensus 2 Is~e~i~~lA~LarL~l~deE~~~~~~~l~~Il~-----------~~~~L~~vDt~~vep~~~~~ 55 (92)
T d2f2ac1 2 VTREEVEHIANLARLQISPEETEEMANTLESILD-----------FAKQNDSADTEGVEPTYHVL 55 (92)
T ss_dssp CCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHH-----------HHGGGGGSCCTTCCCCSCSS
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH-----------HHHHHhcCCcCCCCCCcccc
Confidence 58999999999998 677777777777765 46788899999998888875
No 2
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.69 E-value=7.5 Score=36.78 Aligned_cols=41 Identities=39% Similarity=0.463 Sum_probs=35.9
Q ss_pred ccCcceEEEeeccccc---CCCCCCccc-cceeeccceEEEeccc
Q 000969 421 NKGVPLICLHTLQVKP---SPAPPSFAS-RTVISCQPLMIHLQEE 461 (1206)
Q Consensus 421 ~~~~pl~cl~s~q~~p---sp~pp~~as-qtvi~cqpl~i~lqe~ 461 (1206)
...--+||.--||.+| |+.|-.||+ +|+++|.|=..||||+
T Consensus 62 vkp~~lia~SNLQwR~~s~s~vPtl~Age~s~FS~~PK~~Hlqe~ 106 (138)
T d1iyjb5 62 IKPRVLIAASNLQWRPESTSRVPTLFAGNFSVFSASPKEAHFQER 106 (138)
T ss_dssp CCTTCEEEEEEEEECCCTTCSSCEEEEEEEEEEESSCSSHHHHHH
T ss_pred cCcceEEEEeccEEccccCCCCceEEeeccceecCCccHHHHHHH
Confidence 3455699999999998 788999998 5899999999999996
No 3
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=19.04 E-value=21 Score=30.75 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=38.2
Q ss_pred cchhhhhcccCCCccccccccCCCcccccCCCCcccCCCCCcccCCCCC--ceeeEEEeehh
Q 000969 868 EGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPD--DVDICVELKDW 927 (1206)
Q Consensus 868 ~gl~k~l~~ls~gpl~~lfk~s~~~~~d~~~~~~~~~~~~~~~~l~~pd--~~dv~i~l~dw 927 (1206)
+|+.++|..+..|=-+.++=++.+ .-|+.|.+.+.+|- .|-++|||.++
T Consensus 62 ~G~~~~l~~M~~Ge~~~v~ip~~~-----------ayG~~g~~~~~Ipp~a~l~f~ieLl~~ 112 (115)
T d1kt1a3 62 IGIDKALEKMQREEQCILHLGPRY-----------GFGEAGKPKFGIEPNAELIYEVTLKSF 112 (115)
T ss_dssp HHHHHHHTTCCTTCEEEEEECGGG-----------SSCTTCBTTTTBCTTCCEEEEEEEEEE
T ss_pred chhHhhhccchhhceeEEEeCHHH-----------CcCCCCCCCCCcCcCCeEEEEEEEEEE
Confidence 689999999999999999988875 33444556666655 57788999886
No 4
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.22 E-value=1.3e+02 Score=24.50 Aligned_cols=60 Identities=7% Similarity=0.078 Sum_probs=43.2
Q ss_pred cccchhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000969 1143 SHTSLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRS 1204 (1206)
Q Consensus 1143 ~~~~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~ 1204 (1206)
-|..+++++..-++-|....+....|+.. ++.+. ..-.+-+..|+++-+.++.++.+-|.
T Consensus 41 ~h~~l~~~l~~~~~~v~~l~~~a~~L~~~-~~~~~-~~I~~~~~~l~~rw~~l~~~~~~r~~ 100 (105)
T d1s35a2 41 KFEDFLGSMENNRDKVLSPVDSGNKLVAE-GNLYS-DKIKEKVQLIEDRHRKNNEKAQEASV 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888888888888888875 44332 23335677888888888887776554
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=15.15 E-value=1.2e+02 Score=24.85 Aligned_cols=50 Identities=6% Similarity=0.118 Sum_probs=40.5
Q ss_pred hHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 000969 1150 TLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLL 1199 (1206)
Q Consensus 1150 t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~ 1199 (1206)
-+..|+.......++.+++-.++.-.-+|....--+++|++|+++.+.=+
T Consensus 4 Yl~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki 53 (65)
T d1lrza1 4 YIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKI 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888887788999999999887543
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.85 E-value=1.3e+02 Score=25.73 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=43.2
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCC--ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGST--EYSSDHLASINQLREKIESMQSLLTQLR 1203 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~--e~s~~~~~~~~~l~~~le~mq~l~~~lr 1203 (1206)
.+.....++...+.+.+++=+++..++|.. ++.....++++.|+++|..++.-+..+-
T Consensus 32 ~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 91 (110)
T d1seta1 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888999999999888763 3444556778888888888776665543
No 7
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.45 E-value=2.8e+02 Score=22.76 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=41.5
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000969 1146 SLESTLTSLEEAVSDSQAKCAALVTNLGSTEYSSDHLASINQLREKIESMQSLLTQLRSQ 1205 (1206)
Q Consensus 1146 ~~e~t~~~le~a~~~sqa~c~~l~~~~~~~e~s~~~~~~~~~l~~~le~mq~l~~~lr~~ 1205 (1206)
.+..+...|+..+.+.+...++|.+.-.. +.+...-..-.+.++..+.|+.+|.+|...
T Consensus 16 ~i~~~~~~i~~~l~~L~~~~~~l~~~W~G-~A~~af~~~~~~W~~~~~~l~~~L~~i~~~ 74 (94)
T d1wa8b1 16 AIQGNVTSIHSLLDEGKQSLTKLAAAWGG-SGSEAYQGVQQKWDATATELNNALQNLART 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGSC-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777666544 344555567788888889999998888653
No 8
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=9.81 E-value=72 Score=28.19 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=29.7
Q ss_pred ecccceEEEEEEecCCCcceecCCCCcEEEEeeeee
Q 000969 602 ELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQ 637 (1206)
Q Consensus 602 el~d~~~e~am~tadg~pl~~vpppggivr~gv~c~ 637 (1206)
++-|+..-.|.-|++.+=+|.+|--+|-||+.|.-+
T Consensus 18 dFPDiR~~~~I~S~~~G~vl~IPRE~~l~R~Yv~l~ 53 (101)
T d1pn0a3 18 NFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQ 53 (101)
T ss_dssp CCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEEC
T ss_pred CCCCCceEEEEEeCCCCcEEEEECCCCcEEEEEEcC
Confidence 355777778888988777999999999999999653
No 9
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}
Probab=8.92 E-value=1.2e+02 Score=26.44 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=27.0
Q ss_pred eeeEEEeeechhHHHHHHhhhcccce---eeeccccccccccceeeeeeeecccCCCC
Q 000969 326 VDHIFLCIKDAEFQLELLMQSLFFSR---ATVSDGETASNLTKITVAGLFLRDTFSRP 380 (1206)
Q Consensus 326 ~dhifl~ikd~~f~lell~~sl~~~r---as~~~~~~~~~lt~i~igglflrd~fs~p 380 (1206)
.|-||||++|...+ =+...|-... .+.+-+.+...+....-++.+.-++|+.+
T Consensus 56 ~DiVil~v~d~~i~--~v~~~l~~~~~ivi~~s~~~~~~~l~~~~~~~~~~~~~~~~~ 111 (153)
T d2i76a2 56 NGVVFVIVPDRYIK--TVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSL 111 (153)
T ss_dssp --CEEECSCTTTHH--HHHTTTCCSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--C
T ss_pred CcEEEEeccchhhh--HHHhhhcccceeeeecccchhhhhhhhhccccceeeeecccc
Confidence 58999999997653 3444442222 23344444455555555555555555444
No 10
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.72 E-value=2.3e+02 Score=22.77 Aligned_cols=30 Identities=3% Similarity=0.200 Sum_probs=22.5
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHHHhhcc
Q 000969 1144 HTSLESTLTSLEEAVSDSQAKCAALVTNLG 1173 (1206)
Q Consensus 1144 ~~~~e~t~~~le~a~~~sqa~c~~l~~~~~ 1173 (1206)
|..++.++..-++.+....+.+.+|+..-+
T Consensus 41 h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~ 70 (106)
T d1s35a1 41 HAGIKDEIDGHQDSYQRVKESGEKVIQGQT 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446778888888888888888888877543
Done!