BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000971
(1206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 71
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ H+ + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHR--LSTVKNADRIIVMEKG 215
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L DE ++ LD + I+ + + I
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 187
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 69
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ H+ + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHR--LSTVKNADRIIVMEKG 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L DE ++ LD + I+ + + I
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 185
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 75
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ H+ + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHR--LSTVKNADRIIVMEKG 219
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L DE ++ LD + I+ + + I
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 191
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 71
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ H+ + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHR--LSTVKNADRIIVMEKG 215
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L DE ++ LD + I+ + + I
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 187
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 75
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ H+ + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHR--LSTVKNADRIIVMEKG 219
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L D+ ++ LD + I+ + + I
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK---I 191
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 28/213 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L G++ + G +TA++G +G GK+TL +G + + G I + Y +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 915 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPE-----VDSETRKMFIEEVMELVELK 966
S G Q+ + F +VY+ + + A ++LP + VD+ ++ IE + + K
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD----K 139
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRN 1025
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V
Sbjct: 140 P----------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
+ G T++ H IDI + D +F+MK G
Sbjct: 190 QKELGITIIIATHD--IDIVPLYCDNVFVMKEG 220
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 299 TDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSST 358
D LK G+E + D+ +S G++KRV ++V L +DE + GLD
Sbjct: 124 VDNALKRTGIE-----HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 359 TFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG-PREL 411
+I+ L + T +I+ T+D+ D++ ++ +G+++ QG P+E+
Sbjct: 179 VSEIMKLLVEMQKELGITIIIA-------THDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 412 VL--EFFESMGFKCPKRKGVADFLQE 435
E + + P+ + + L+E
Sbjct: 232 FAEKEVIRKVNLRLPRIGHLMEILKE 257
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 21/178 (11%)
Query: 843 EMKLQGVLED--KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT- 897
E+KL+ +++ LN ++ + G AL+G SG+GK+TL+ ++G + T G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 898 GNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP--EVDSETRKMF 955
++ P K R G QN P +TVY+++ + LR P E+D + R
Sbjct: 63 DEKDVTELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR--- 115
Query: 956 IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
EV +++ + L+ LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 116 --EVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+++RV +V L +DE + LD+ ++ LK+ + G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR-LQKELGITTVYVTH 192
Query: 384 PAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
E + D I ++ +G+I+ G P E+ + PK K V FL
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV---------YYKPKYKFVGGFL 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 28/278 (10%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGG-YITGNITISGYPKK 908
K+V L+ ++ G ++G SGAGKTT M +++G TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q P +T +E++ + +++ E E RK +EEV +++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIHH 132
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 1024
++ LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 133 VLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1025 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG-------QEIYVGPLGRHSCQLISYF 1077
+ + G T++ H P DIF D + ++ +G +++Y P+ LI
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
Query: 1078 EAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1115
+ G + +G + V+ SS +G+ D+
Sbjct: 245 NELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDV 281
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 28/278 (10%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGG-YITGNITISGYPKK 908
K+V L+ ++ G ++G SGAGKTT M +++G TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q P +T +E++ + +++ E E RK +EEV +++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIHH 132
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 1024
++ LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 133 VLNHFP-----RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 1025 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG-------QEIYVGPLGRHSCQLISYF 1077
+ + G T++ H P DIF D + ++ +G +++Y P+ LI
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
Query: 1078 EAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1115
+ G + +G + V+ SS +G+ D+
Sbjct: 245 NELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDV 281
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L ++ F G + ++G +G+GKTTL+ +L+G G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 916 SGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
GY QN TV E + +S L + +SE RK I++V+ELV G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELV----------G 129
Query: 975 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
L G++ LS Q++RL IA L + + +DEP S LD + + + + + +
Sbjct: 130 LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G+ ++ H+ ++ D D + + G
Sbjct: 190 GKGIILVTHE--LEYLDDMDFILHISNG 215
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 53/252 (21%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPER 226
+LKDV+ + G++ +++G +G + +G F+ +
Sbjct: 26 VLKDVNAEFETGKIYVVVGK----NGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRK 81
Query: 227 TAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+ Q+ + I TV E +AFS G+ +E+ +R I +
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKR-----------IKKVL 125
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
+ + G A AD + +SGG+++R+ M+ L
Sbjct: 126 ELVGLSGLAA----------------ADPL-------NLSGGQKQRLAIASMLARDTRFL 162
Query: 346 FMDEISTGLDSST---TFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD + FQ++ LK N G +I L+ E D D I+ +S+G
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESLK-----NEGKGII-LVTHELEYLDDMDFILHISNGT 216
Query: 403 IVYQGPRELVLE 414
I + G E +E
Sbjct: 217 IDFCGSWEEFVE 228
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 69
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ + + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAAR--LSTVKNADRIIVMEKG 213
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L DE ++ LD + I+ + + I
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 185
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 40/223 (17%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLAL 75
Query: 907 KKQETFARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM 954
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++MR + + + GRTV+ + + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAAR--LSTVKNADRIIVMEKG 219
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T+VG++ G+SGG+R+R+ +V L DE ++ LD + I+ + + I
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 191
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
G VI ++ T D II++ G+IV QG + +L ES+
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 15/204 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+N L+ + G L+G SG GKTT + +++G T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
+ Q+ P +TVYE++ + ++ P+ + + R + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++ D + +M RG
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRG 218
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVIS 380
+SGG+R+RV +V L MDE + LD+ + + L+Q + + + I
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT----IY 197
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL 413
+ E + D I +++ GQ++ G P E+ L
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 15/204 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+N L+ + G L+G SG GKTT + +++G T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
+ Q+ P +TVYE++ + ++ P+ + + R + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++ D + +M RG
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRG 219
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVIS 380
+SGG+R+RV +V L MDE + LD+ + + L+Q + + + I
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT----IY 198
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL 413
+ E + D I +++ GQ++ G P E+ L
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 39/241 (16%)
Query: 821 ILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLV-----------LLNGLSGAFRPGVL 869
+L EP L F+E V + E QG LE K V + S + G +
Sbjct: 318 LLEREPK-LPFNEGV----ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSV 372
Query: 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIH 925
TAL+G SG+GK+T++ +L + +G I++ G+ +Q ++I ++ +
Sbjct: 373 TALVGPSGSGKSTVLSLL--LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430
Query: 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGLPGV 978
S ++ E++ Y A P V +E I+ V E+ I+ ++VG GV
Sbjct: 431 S--CSIAENIAYGA--DDPSSVTAEE----IQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 483 L-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAH 540
Query: 1039 Q 1039
+
Sbjct: 541 R 541
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 33/210 (15%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHD 218
P+R + + I +D S I G +T L+GP SG ++ +GHD
Sbjct: 352 PARPE-VPIFQDFSLSIPSGSVTALVGP---SGSGKSTVLSLLLRLYDPASGTISLDGHD 407
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + P + I G S+ +L + EN A D
Sbjct: 408 IRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAENIAYGADD 444
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
P A E Q + + + +T+VG++ + +SGG+++R+ +
Sbjct: 445 PS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARAL 498
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQ 368
+ L +DE ++ LD+ + + L +
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDR 528
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 39/241 (16%)
Query: 821 ILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLV-----------LLNGLSGAFRPGVL 869
+L EP L F+E V + E QG LE K V + S + G +
Sbjct: 349 LLEREPK-LPFNEGV----ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSV 403
Query: 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIH 925
TAL+G SG+GK+T++ +L + +G I++ G+ +Q ++I ++ +
Sbjct: 404 TALVGPSGSGKSTVLSLL--LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 461
Query: 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGLPGV 978
S ++ E++ Y A P V +E I+ V E+ I+ ++VG GV
Sbjct: 462 S--CSIAENIAYGA--DDPSSVTAEE----IQRVAEVANAVAFIRNFPQGFNTVVGEKGV 513
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 514 L-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAH 571
Query: 1039 Q 1039
Sbjct: 572 H 572
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 33/210 (15%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHD 218
P+R + + I +D S I G +T L+GP SG ++ +GHD
Sbjct: 383 PARPE-VPIFQDFSLSIPSGSVTALVGP---SGSGKSTVLSLLLRLYDPASGTISLDGHD 438
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + P + I G S+ +L + EN A D
Sbjct: 439 IRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAENIAYGADD 475
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
P A E Q + + + +T+VG++ + +SGG+++R+ +
Sbjct: 476 PS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARAL 529
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQ 368
+ L +DE ++ LD+ + + L +
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDR 559
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK----QET 911
+L GLS + PG AL+G SG GK+T++ +L + + G I I G K + T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
++I+ ++ + ++ E+++Y L P S +EE L + I
Sbjct: 1152 RSQIAIVSQEPTLFD--CSIAENIIYG----LDP---SSVTMAQVEEAARLANIHNFIAE 1202
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
L VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V +
Sbjct: 1203 LPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL- 1260
Query: 1025 NTVDTGRTVVCTIHQ 1039
+ GRT + H+
Sbjct: 1261 DRAREGRTCIVIAHR 1275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L G++ G AL+G SG GK+T++ +L + + G ITI G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLL--LRYYDVLKGKITIDG----------- 479
Query: 916 SGYCEQNDIHSPF------VTVYESLLYSAWLRLPPEVDSE--TRKMFIEEVMELVELKP 967
+ DI+ F V E L++ + + E TR+ + ++ +
Sbjct: 480 ---VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAAC-KMANAEK 535
Query: 968 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
I++L VG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV
Sbjct: 536 FIKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ 594
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
+ + + GRT + H+ I +A +L + + GQ + VG
Sbjct: 595 QAL-DKAAKGRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 313 DTMVGDEMIRG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370
+T+VGD RG +SGG+++R+ +V L +DE ++ LD+ + + L +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ T +I+ DL II +GQ+V G ++
Sbjct: 602 KGRT-TIIIAHRLSTIRNADL---IISCKNGQVVEVGDHRALM 640
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 313 DTMVGDEMIRG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370
+T VGD RG +SGG+++R+ +V L +DE ++ LD+ + + L +
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + L D I ++S+G I+ +G
Sbjct: 1265 EGRTCIVIAHRLNTVMNA----DCIAVVSNGTIIEKG 1297
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ- 909
+D +L +S +P + A G SG GK+T+ +L + G ITI G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
E + G+ Q D T+ E+L Y E D ++ +V++L +
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYGL------EGDYTDEDLW--QVLDLAFARS 120
Query: 968 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
++++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 121 FVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + +++ GRT + H+ I DA D+++ +++G
Sbjct: 180 KAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
K+ ++G+S + G AL+G SG GKTT + +L+G + T G I ++ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R G QN P +TV+E++ + R + + E R V+E+ K LI
Sbjct: 75 ----REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR------VVEIAR-KLLI 123
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+L+ + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 124 DNLLDRKP-TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+++RV +V L DE + LD++ I+ +H+ G + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRM-IMRAEIKHLQQELGITSVYVTH 192
Query: 384 PAPETYDLFDDIILLSDGQIV-YQGPRELVLEFFESMGFKCPKRKGVADFL 433
E + I + + G++V Y P E+ + PK VA F+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV---------YDSPKNMFVASFI 234
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETF 912
+L GL+ + G AL+G SG GK+T + ++ ++ + G ++I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
I G Q + T+ E++ Y E++ ++ + +++L +L
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFDTL 519
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GRT
Sbjct: 520 VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRT 577
Query: 1033 VVCTIHQ----PGIDIFDAFDELFLMKRGGQE 1060
+ H+ D+ FD ++++G +
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L GLS + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ E +L+ + +R + EE++ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 976 P-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1027 VDTGRTVVCTIHQ 1039
GRT + H+
Sbjct: 1217 AREGRTCIVIAHR 1229
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG--ISGGERKRVTTGEMMV 339
DV M I +EAN D+ +K L DT+VG+ RG +SGG+++R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 340 GPALALFMDEISTGLDSST 358
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T VGD+ + +SGG+++R+ +V L +DE ++ LD+ + + L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 373 NSGTAV---ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ + +S +Q A D I+++ +G++ G + +L
Sbjct: 1221 RTCIVIAHRLSTIQNA-------DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 14/212 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETF 912
+L GL+ + G AL+G SG GK+T + ++ ++ + G ++I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
I G Q + T+ E++ Y E++ ++ + +++L +L
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFDTL 519
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GRT
Sbjct: 520 VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRT 577
Query: 1033 VVCTIHQ----PGIDIFDAFDELFLMKRGGQE 1060
+ H+ D+ FD ++++G +
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L GLS + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ E +L+ + +R + EE++ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 976 P-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1027 VDTGRTVVCTIHQ 1039
GRT + H+
Sbjct: 1217 AREGRTCIVIAHR 1229
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG--ISGGERKRVTTGEMMV 339
DV M I +EAN D+ +K L DT+VG+ RG +SGG+++R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 340 GPALALFMDEISTGLDSST 358
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
+T VGD+ + +SGG+++R+ +V L +DE ++ LD+ + + L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 373 NSGTAV---ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ + +S +Q A D I+++ +G++ G + +L
Sbjct: 1221 RTCIVIAHRLSTIQNA-------DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGGYI-TGNITISGYPK 907
E+ + L ++ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 908 KQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
+ T R G+ Q P +T E++ + + E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ + + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 EERFAN----HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 1026 -TVDTGRTVVCTIHQPGIDIF 1045
+ G+TVV H + F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 16/208 (7%)
Query: 838 VDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGG 894
+D+ Q K G LE +L G++ R G + ++G SG+GK+T + ++L G
Sbjct: 4 IDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 59
Query: 895 YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETRK 953
I I + G Q P +TV ++ L +R P +E +
Sbjct: 60 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 119
Query: 954 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
M E+++ V LK + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 120 M---ELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 171
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041
V+ ++ + G T+V H+ G
Sbjct: 172 EMVGEVLSVMKQLANEGMTMVVVTHEMG 199
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 324 ISGGERKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGG+ +RV + + P + LF DE ++ LD ++++ +KQ N G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVT 195
Query: 383 QPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
++ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 241
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGGYI-TGNITISGYPK 907
E+ + L ++ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 908 KQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
+ T R G+ Q P +T E++ + + E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ + + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 EERFAN----HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 1026 -TVDTGRTVVCTIHQPGIDIF 1045
+ G+TVV H + F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 16/208 (7%)
Query: 838 VDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGG 894
+D+ Q K G LE +L G++ R G + ++G SG+GK+T + ++L G
Sbjct: 25 IDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 895 YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETRK 953
I I + G Q P +TV ++ L +R P +E +
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
Query: 954 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
M E+++ V LK + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 141 M---ELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041
V+ ++ + G T+V H+ G
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTHEMG 220
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 324 ISGGERKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGG+ +RV + + P + LF DE ++ LD ++++ +KQ N G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVT 216
Query: 383 QPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
++ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 262
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQETFA 913
+ G+S R G + L+G SG+GKTT++ +++G R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G QN +TVY+++ + + P+ + + R + E++ + L+
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRF- 142
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1032
LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 143 ----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
V H + + D + ++ G E + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+++RV + L DE +D+ ++ ++Q VH G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
E ++ D +++L +G + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G +G SG GK+TL+ +++G +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
P ++V E++ + L E + +V E+++L L+ LS
Sbjct: 85 ALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 1038
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGG+R+RV G +V +DE + LD++ Q+ + + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G +G SG GK+TL+ +++G +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
P ++V E++ + L E + +V E+++L L+ LS
Sbjct: 85 ALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 1038
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGG+R+RV G +V +DE + LD++ Q+ + + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 850 LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK----TGGYI--TGNITIS 903
+EDK +L GLS PG + A+MG +G+GK+TL L+GR+ TGG + G ++
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 904 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF-IEEVME- 961
P+ + + Q + P V+ + L +A + ET F +++ME
Sbjct: 70 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 126
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186
Query: 1022 TVRNTVDTGRTVVCTIH 1038
V + D R+ + H
Sbjct: 187 GVNSLRDGKRSFIIVTH 203
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISG-----YPKKQE 910
LS + G L+G SG GKTT + ++G T G YI N+ P K+
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL---KP 967
A + Q+ P TVY+++ + LR P+ + + R + E + L EL KP
Sbjct: 85 DVAXVF----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKP 140
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 141 -----------RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 850 LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK----TGGYI--TGNITIS 903
+EDK +L GLS PG + A+MG +G+GK+TL L+GR+ TGG + G ++
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 904 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF-IEEVME- 961
P+ + + Q + P V+ + L +A + ET F +++ME
Sbjct: 89 LSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 145
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
+ L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205
Query: 1022 TVRNTVDTGRTVVCTIH 1038
V + D R+ + H
Sbjct: 206 GVNSLRDGKRSFIIVTH 222
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG------YPKKQE 910
+S + G L+G SG GKTT + +++G + G G+ ++ P K
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
A + Q+ P +TVY+++ + LR P + + R + EV EL+ L L+
Sbjct: 82 DIAMVF----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLN 134
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 135 R-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
R +SGG+R+RV G +V MDE + LD+ ++ LK+ + G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYV 196
Query: 382 LQPAPETYDLFDDIILLSDG 401
E + D I +++ G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 24/194 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L ++ + G A +G+SG GK+TL++++ + +G I I G+ K +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 916 S---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
G +Q++I TV E++L L P D E + E ++ I +L
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENIL----LGRPTATDEE-----VVEAAKMANAHDFIMNL 463
Query: 973 -------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
VG GV LS Q++RL+IA + NP I+ +DE TS LD + +I+ + +
Sbjct: 464 PQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL-D 521
Query: 1026 TVDTGRTVVCTIHQ 1039
+ RT + H+
Sbjct: 522 VLSKDRTTLIVAHR 535
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 209 SGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
SG++ +GH++ +F+ R + Q DN + TV+E +
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG---------------- 438
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+P A E EA + + + ++ L DT VG+ ++ +SG
Sbjct: 439 ---------RP--------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSG 480
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
G+++R++ + + L +DE ++ LD + + +++ + + S ++
Sbjct: 481 GQKQRLSIARIFLNNPPILILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRL 536
Query: 387 ETYDLFDDIILLSDGQIVYQGP-RELV 412
T D I+++ +G IV G REL+
Sbjct: 537 STITHADKIVVIENGHIVETGTHRELI 563
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G +G SG GK+TL+ +++G +T G G ++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
P ++V E++ + L E + +V E+++L L+ LS
Sbjct: 85 ALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSG 136
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 1038
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGG+R+RV G +V +D+ + LD++ Q+ + + +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK------QETFARISGY 918
+ G + ++G +G GK+T + +L+G+ N + G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
+ + +V + + + L + D ET K+ EEV++ +EL+ +++ +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLER-----EI 156
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYC 919
G + G + ++G +G GKTT + L+G T G I ++T++ P+ Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YI 356
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL--PG 977
+ + YE +Y ++ S+ F + + LKPL ++ L
Sbjct: 357 KAD---------YEGTVYELLSKIDA---SKLNSNFYKTEL----LKPL--GIIDLYDRE 398
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1037
V+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 1038 HQPGIDIFDAFDELFLMK 1055
+ I D L + +
Sbjct: 459 EHDVLXIDYVSDRLXVFE 476
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISG--------- 904
L+G+S + G +T ++G +G+GK+TL++V++G G N I+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 905 ---------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 955
P K+ T E N SP SL Y W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 956 IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
+++E ++L L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 1016 AAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
A + V G T + H+ I + + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISG--------- 904
L+G+S + G +T ++G +G+GK+TL++V++G G N I+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 905 ---------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 955
P K+ T E N SP SL Y W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 956 IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
+++E ++L L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1016 AAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
A + V G T + H+ I + + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK---KQETFA 913
L+ +S + G AL+G SG+GK+T+ ++ + + +G+I + G+ K
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-VDSETRKMFIEEVMELVELKPL-IQS 971
R QN +H T+ ++ Y+A E ++ R+ ME +E P + +
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ---AHAMEFIENMPQGLDT 472
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
++G G S LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 473 VIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHS 1070
TV+ H+ + + DE+ ++ G EI GRH+
Sbjct: 531 TVLVIAHR--LSTIEQADEILVVDEG--EII--ERGRHA 563
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT++G+ +SGG+R+RV ++ A L +DE ++ LD+ + I L + +
Sbjct: 471 DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQK 528
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
N VI+ T + D+I+++ +G+I+ +G
Sbjct: 529 NKTVLVIA---HRLSTIEQADEILVVDEGEIIERG 560
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 44/255 (17%)
Query: 822 LPFEPHSLTFDEVVY----------SVDMPQEMKLQGVLED----KLVLLNGLSGAFRPG 867
LP E + DE+ + S D+ +MK +++ +LV+ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 868 VLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGYPKKQETFARISGYCEQNDIH 925
+ ++G +G GKTT +L G T G +T I Y K Q F G +Q +
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLEN 353
Query: 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985
+ ++L S+W F EEV + + L L++S V+ LS +
Sbjct: 354 AS----KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NVNDLSGGE 390
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIF 1045
++L IA L + +D+P+S LD IV + ++ V R V I + I
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKR-VTRERKAVTFIIDHDLSIH 449
Query: 1046 DAFDELFLMKRGGQE 1060
D + ++ +G E
Sbjct: 450 DYIADRIIVFKGEPE 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 35/244 (14%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISG---YCEQ 921
+ + ++G +G GKTT++ +L+G + N + K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 922 NDIHSPFVTVYESLLY----SAWLR-----LPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+++S + + + Y S +L+ + ++D +K +EV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+ GL +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKY 189
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNP 1092
V+ H + + D +L + G +Y GR S + A G+ GY P
Sbjct: 190 VIVVDHD--LIVLDYLTDLIHIIYGESSVY----GRVSKS----YAARVGINNFLKGYLP 239
Query: 1093 ATWM 1096
A M
Sbjct: 240 AENM 243
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 10/201 (4%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGGYI-TGNITISGYPK 907
E+ + L ++ + G ++ G SG+GK+T ++++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 908 KQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
+ T R G+ Q P +T E++ + E R+ E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ + + LS Q++R+ IA L NP II DEPT LD++ + + ++
Sbjct: 135 EERFAN----HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 1026 -TVDTGRTVVCTIHQPGIDIF 1045
+ G+TVV H + F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 32/220 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L+G+S + G +T ++G +G+GK+TL++V++G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 917 GYCEQNDIHSP----FVTVYESLL---------------YSAWLRLPPEVDSETRKMFIE 957
Y +P +TV E+LL Y W+ P+ + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAF-- 135
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+++E ++L L G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1018 IVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ V G T + H+ I + + D L++M G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 1041 G 1041
G
Sbjct: 214 G 214
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 29/215 (13%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L GL+ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---- 85
Query: 914 RISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ + +H+ V E LL+ R TR +EE+ + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 973 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
G P G +G LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLL 199
Query: 1024 RNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + RTV+ HQ + + + + +K G
Sbjct: 200 YESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 269 RENEA-GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327
REN A G+ P ++ + A+A E + I+ G DT VG E +SGG
Sbjct: 110 RENIAYGLTRTPTME-EITAVAMESGAHDFIS-------GFPQGYDTEVG-ETGNQLSGG 160
Query: 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
+R+ V ++ L +D+ ++ LD+ ++ L + S T ++ Q +
Sbjct: 161 QRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS-- 218
Query: 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414
+ I+ L +G + QG ++E
Sbjct: 219 LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 11/193 (5%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
G AL+G +G+GK+T+ +L G G ++ Y + + I G Q+ I
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNR--NSIRSIIGIVPQDTI 103
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984
T+ ++LY EV T+ + + +E + K ++VG G+ LS
Sbjct: 104 LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKK--WDTIVGNKGMK-LSGG 159
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1044
+R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ +
Sbjct: 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHR--LST 216
Query: 1045 FDAFDELFLMKRG 1057
+ + + L+ +G
Sbjct: 217 ISSAESIILLNKG 229
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT+VG++ ++ +SGGER+R+ ++ + DE ++ LDS T + ++ V
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY----LFQKAVED 200
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 415
+ ++ T + IILL+ G+IV +G + +L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 844 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903
M+LQ V E L LSG R G + L+G +GAGK+TL+ ++G +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 904 GYPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
G P + + +++ Y Q PF T W L +TR + +V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 961 ELVEL-KPLIQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 1014
+ L L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVA 167
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIH 1038
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 41/192 (21%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY------PKKQE 910
L+ LS G ++G +GAGKT +++++G +G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL---PPEVDSETRKMFIEEVMELVELKP 967
+ QN P + V ++L + ++ P V R + IE L++ P
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNP 125
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
L LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 LT-----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 1028 DTGRTVVCTIHQ 1039
+ R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 44/207 (21%)
Query: 209 SGRVTYNGHDMGEFVPER-TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELA 267
SGR+ +G D+ + PE+ A++ Q+ + M V++ L F R + + +L
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL---- 109
Query: 268 RRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327
D D+ ++ + + N +T +SGG
Sbjct: 110 ----------DTARDLKIEHLL----DRNPLT------------------------LSGG 131
Query: 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
E++RV +V L +DE + LD T L +H + V+ + E
Sbjct: 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV-LHKKNKLTVLHITHDQTE 190
Query: 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414
+ D I ++ DG+++ G E + E
Sbjct: 191 ARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 26/204 (12%)
Query: 844 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903
M+LQ V E L LSG R G + L+G +GAGK+TL+ ++G +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 904 GYPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
G P + + +++ Y Q PF T W L +TR + +V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 961 ELVEL-KPLIQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 1014
+ L L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVA 167
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIH 1038
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 11/187 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++L G + ++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R Q + + S + LP E+D+ + V EL+ L L
Sbjct: 81 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1032
P S LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G T
Sbjct: 136 SYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 1033 VVCTIHQ 1039
++ H+
Sbjct: 194 ILLITHE 200
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGG+++RV + L DE ++ LD +TT I+ LK ++ G ++ +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD-INRRLGLTILLIT 198
Query: 383 QPAPETYDLFDDIILLSDGQIVYQ 406
+ D + ++S+G+++ Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQ 222
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQND 923
G + L+G +GAGKTT + ++G + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLS 982
I P +TVYE+L A+ R D E K +E + L LK ++ L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LS 141
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDS---STTFQIVNCLKQHVHINSGTAVIS 380
+SGGE++ + G + L DE S GL S F+++ + Q GT ++
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE-----GTTILL 194
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ Q A + +L GQIV +G +L+
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904
+LQ V E L LSG R G + L+G +GAGK+TL+ +G +G G+I +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 905 YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME 961
P + + +++ Y Q PF T W L +TR + +V
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 962 LVEL-KPLIQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1015
+ L L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 1016 AAIVMRTVRNTVDTGRTVVCTIH 1038
+ + + + G +V + H
Sbjct: 169 QSALDKILSALCQQGLAIVXSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904
+LQ V E L LSG R G + L+G +GAGK+TL+ +G +G G+I +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 905 YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME 961
P + + +++ Y Q PF T W L +TR + +V
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 962 LVEL-KPLIQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1015
+ L L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 1016 AAIVMRTVRNTVDTGRTVVCTIH 1038
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVXSSH 191
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 10/172 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++L G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R Q + + S + LP E+D+ + V EL+ L L
Sbjct: 104 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGG+++RV + L D+ ++ LD +TT I+ LK ++ G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLGLTILLIT 221
Query: 383 QPAPETYDLFDDIILLSDGQIVYQ 406
+ D + ++S+G+++ Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQ 245
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKK----QETFARISGYCEQNDIH- 925
L G++GAGKTTL+++L+ + +G + + G P K ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 926 -SPFVTVYESLLYSAW--LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
V + ++ A+ + + ++D E R ++++LV Q +G LS
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
T +++R+ IA L P ++ +DEP +GLD
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK++G A +G +S GE++RV + G L +DE + GLD +
Sbjct: 146 LKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 363 VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++ L A I + E F I+LL DGQ + QG E +L
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 26/193 (13%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQE 910
+L G+S G + L+G +GAGKTT + ++S + + G +T N+ + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV----EEPHE 85
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETRKMFIEEVMELVELK 966
IS E+ Y ++ +LR SE +M +E E+ L
Sbjct: 86 VRKLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSSSEIEEM-VERATEIAGLG 137
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
I+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 138 EKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 1027 VDTGRTVVCTIHQ 1039
G T++ + H
Sbjct: 193 SQEGLTILVSSHN 205
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++L G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R + I F + ++ + LP E+D+ + V EL+ L L
Sbjct: 104 RR----QIGXIFQHFNLLSSRTVF-GNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D +SGG+++RV + L D+ ++ LD +TT I+ LK ++ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLGLT 216
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQ 406
++ + + D + ++S+G+++ Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---YPKK 908
D +L G++ G + ALMG +GAGK+TL +L+G G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 909 QETFARISGYCE-QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ AR + Q + P VT+ L + +L EV F +V + +EL
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLD 130
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
G SGGE+KR +++V +DE +GLD + + N G VI+
Sbjct: 143 GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q Y D + ++ DG++V G EL LE E+ G++ K K
Sbjct: 203 QRIL-NYIQPDKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 23/159 (14%)
Query: 872 LMGVSGAGKTTLMDVLSG--RKTGGYITGN-ITISGYPKKQETFARISGYCEQNDIHSPF 928
L+G +GAGK+ +++++G + G + N I+ P ++ R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEE---VMELVELKPLIQSLVGLPGVSGLSTEQ 985
++VY ++ Y LR V+ + R + E + L++ KP + LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGE 131
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGGER+RV +V L +DE + +D T ++ L+ V ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTH 185
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
E L D++ ++ +G+IV +G + E F + K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLK---ELFSA------KNGEVAEFL 226
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQET 911
+++L GL+ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQYE 85
Query: 912 ----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+++ ++ + ++ E++ Y T+K +EE+
Sbjct: 86 HRYLHRQVAAVGQEPQVFGR--SLQENIAYGL-----------TQKPTMEEITAAAVKSG 132
Query: 968 LIQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA +
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+ GL DT V DE +SGG+R+ V ++ L +D+ ++ LD+++ Q+
Sbjct: 137 ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 365 CLKQHVHINSGTAV-----ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
L + S + + +SL++ A D I+ L G I G + ++E
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDI 924
G AL+G SG+GK+T+ +++ + G+I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLST 983
H TV ++ Y+ E E +M M+ + ++ + +++G GV LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARM--AYAMDFINKMDNGLDTIIGENGVL-LSG 483
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQP 1040
QR+R+ IA L+ + I+ +DE TS LD + R ++ +D RT + H+
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAHR- 538
Query: 1041 GIDIFDAFDELFLMKRG 1057
+ + DE+ +++ G
Sbjct: 539 -LSTIEQADEIVVVEDG 554
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT++G+ + +SGG+R+R+ ++ + L +DE ++ LD+ + I L + +
Sbjct: 471 DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQK 528
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
N + VI+ T + D+I+++ DG IV +G +L
Sbjct: 529 NRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG----YPKKQET 911
+L G+S + + G +++G SG+GK+TL+ +L G + + G Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 912 F---ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R G+ Q P +T E+++ P+ +++ R ++ L EL L
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSEL-GL 130
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
L P LS +++R+ IA L P ++F DEPT LD+ VM +
Sbjct: 131 GDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1029 TGRTVVCTIHQ 1039
G ++V H+
Sbjct: 189 GGTSIVMVTHE 199
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG---ISGGERKRVTTGE 336
++ V M + +EA +Y L LGL GD++ R +SGGE++RV
Sbjct: 102 NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
+ + LF DE + LDS+ T ++++ + IN G I ++ E +L +
Sbjct: 154 ALANEPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTL 210
Query: 397 LLSDGQIV 404
+ DG++V
Sbjct: 211 EMKDGKVV 218
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 29/215 (13%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L GL+ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---- 85
Query: 914 RISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ + +H+ V E LL+ R TR +EE+ + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 973 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
G P G +G LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 1024 RNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + RTV+ Q + + + + +K G
Sbjct: 200 YESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDI 924
G AL+G SG+GK+T+ +++ + G I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLST 983
H TV ++ Y+ + E E +M M+ + ++ + +++G GV LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARM--AYAMDFINKMDNGLDTVIGENGVL-LSG 483
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQP 1040
QR+R+ IA L+ + I+ +DE TS LD + R ++ +D RT + H+
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAHR- 538
Query: 1041 GIDIFDAFDELFLMKRG 1057
+ + DE+ +++ G
Sbjct: 539 -LSTIEKADEIVVVEDG 554
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT++G+ + +SGG+R+R+ ++ + L +DE ++ LD+ + I L + +
Sbjct: 471 DTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQK 528
Query: 373 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
N + VI+ T + D+I+++ DG IV +G +LE
Sbjct: 529 NRTSLVIA---HRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
LNG++ + G L A++G G GK++L+ L + G++ I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL---- 972
QND ++ E++L+ L P + V++ L P ++ L
Sbjct: 78 ----QND------SLRENILFGCQLEEP----------YYRSVIQACALLPDLEILPSGD 117
Query: 973 ---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
+G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 118 RTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 47/256 (18%)
Query: 824 FEPHSLTFDEVVYSVDMPQEMKLQG---VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880
F P+ + F ++ VD+ +E ++ V + L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 881 TTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 938
TT + +L+G T G + ++T++ P Q A G TVYE L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 438
Query: 939 AWLRLPPEVDSE--TRKMFIEEVMELVELKPLIQSLVGL--PGVSGLSTEQRKRLTIAVE 994
++DS + E+ LKPL ++ L V LS + +R+ IA
Sbjct: 439 ------SKIDSSKLNSNFYKTEL-----LKPL--GIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 995 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054
L+ + I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-- 543
Query: 1055 KRGGQEIYVGPLGRHS 1070
++ G GRH
Sbjct: 544 ------VFEGEPGRHG 553
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 20/184 (10%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK------QETFARISGY 918
+ G++ ++G +G GKTT + +L+G+ N + + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL--- 171
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF--IEEVMELVELKPLIQSLVGLP 976
+ +I Y LL P V + R++ ++EV + E+ ++ L
Sbjct: 172 -KNGEIRPVVKPQYVDLL-------PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 223
Query: 977 -GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1035
+ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 1036 TIHQ 1039
H
Sbjct: 284 VEHD 287
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGGE +RV ++ A F DE S+ LD ++ +++ N G A
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA--NEGKA 280
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPK--RKGVADFLQ 434
V+ +++ D D+I +VY P + F PK R G+ +FLQ
Sbjct: 281 VL-VVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 326
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGGE +RV ++ A +DE S LD + ++ + N TA
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV- 436
++ +D+ I +SD IV++G MG R+G+ FL V
Sbjct: 526 LVV-------EHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLASVG 573
Query: 437 -TSRKD 441
T R+D
Sbjct: 574 ITFRRD 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 25/218 (11%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---PKKQETF 912
+L ++ +PG AL+G +G+GKTT++++L + G I + G K+ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
G Q+ I TV E+L Y P D E I+E +L I+ L
Sbjct: 428 RSSIGIVLQDTILFS-TTVKENLKYGN----PGATDEE-----IKEAAKLTHSDHFIKHL 477
Query: 973 ------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
V LS QR+ L I +ANP I+ +DE TS +D + + +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
++ G+T + H+ I +A +L ++ R G+ + +G
Sbjct: 538 ME-GKTSIIIAHRLN-TIKNA--DLIIVLRDGEIVEMG 571
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 29/215 (13%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L GL+ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ---- 85
Query: 914 RISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ + +H+ V E LL+ R TR +EE+ + +
Sbjct: 86 -----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 973 VGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
G P G +G L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 1024 RNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + RTV+ Q + + + + +K G
Sbjct: 200 YESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 38/219 (17%)
Query: 806 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFR 865
+L E + LP S++F+ V + E+ +L+G++ + +
Sbjct: 319 VLNEKPAIEEADNALALPNVEGSVSFENVEFRY-----------FENTDPVLSGVNFSVK 367
Query: 866 PGVLTALMGVSGAGKTTLMDV---LSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 922
PG L A++G +G+GK+TLM++ L + G + + K ++ IS ++
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLRGHISAVPQET 426
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP------ 976
+ S T+ E+L W R D E++E ++ + ++ LP
Sbjct: 427 VLFSG--TIKENL---KWGREDATDD---------EIVEAAKIAQIHDFIISLPEGYDSR 472
Query: 977 ---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 21/204 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
L L+ G + A++G +G GK+TL+D+L G R G I E +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQ 66
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
I G+ Q SPF S+L + +++ + + + + L L + +
Sbjct: 67 SI-GFVPQF-FSSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1032
+ LS QR+ + IA + + +I +DEPTS LD IV+ + + + T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKR 1056
VV T HQP + A L L K+
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQ 205
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 47/256 (18%)
Query: 824 FEPHSLTFDEVVYSVDMPQEMKLQG---VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880
F P+ + F ++ VD+ +E ++ V + L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 881 TTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 938
TT + +L+G T G + ++T++ P Q A G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 424
Query: 939 AWLRLPPEVDSE--TRKMFIEEVMELVELKPLIQSLVGL--PGVSGLSTEQRKRLTIAVE 994
++DS + E+ LKPL ++ L V LS + +R+ IA
Sbjct: 425 ------SKIDSSKLNSNFYKTEL-----LKPL--GIIDLYDRNVEDLSGGELQRVAIAAT 471
Query: 995 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054
L+ + I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-- 529
Query: 1055 KRGGQEIYVGPLGRHS 1070
++ G GRH
Sbjct: 530 ------VFEGEPGRHG 539
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 20/184 (10%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK------QETFARISGY 918
+ G++ ++G +G GKTT + +L+G+ N + + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL--- 157
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF--IEEVMELVELKPLIQSLVGLP 976
+ +I Y LL P V + R++ ++EV + E+ ++ L
Sbjct: 158 -KNGEIRPVVKPQYVDLL-------PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
Query: 977 -GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1035
+ LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 1036 TIHQ 1039
H
Sbjct: 270 VEHD 273
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGGE +RV ++ A F DE S+ LD ++ +++ N G A
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA--NEGKA 266
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPK--RKGVADFLQ 434
V+ +++ D D+I +VY P + F PK R G+ +FLQ
Sbjct: 267 VL-VVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 312
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D + +SGGE +RV ++ A +DE S LD + ++ + N TA
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV- 436
++ +D+ I +SD IV++G MG R+G+ FL V
Sbjct: 512 LVV-------EHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLASVG 559
Query: 437 -TSRKD 441
T R+D
Sbjct: 560 ITFRRD 565
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L +S PG AL+G SGAGK+T++ +L + +G I I G Q T A +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 917 ---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
G Q+ + T+ +++ Y EV++ + I + ++ ++ V
Sbjct: 128 SHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDA--IMAFPEGYRTQV 184
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
G G+ LS +++R+ IA ++ P II +DE TS LD + ++ V RT
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTT 242
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQL 1073
+ H+ + D++ ++K G + GRH L
Sbjct: 243 IVVAHR--LSTVVNADQILVIKDG----CIVERGRHEALL 276
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN 373
T VG+ ++ +SGGE++RV ++ + +DE ++ LD+S I L + V N
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCAN 239
Query: 374 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
T V++ T D I+++ DG IV +G E +L
Sbjct: 240 RTTIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 27/214 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG----YITGNITISGYPKKQET 911
L+N +S G + A++G +GAGK+TL+ +L+G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 912 FARISGYCEQ-NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
AR Q +++ PF +V E + + P S+ R+ +++VM + L Q
Sbjct: 83 LARTRAVMRQYSELAFPF-SVSEVI----QMGRAPYGGSQDRQA-LQQVMAQTDCLALAQ 136
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 137 RDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 1025 N-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
T V C +H + A D + L+ +G
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 17/163 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---YPKKQETF 912
+LN +S + PG + ++G SG GKTTL+ L+G + +G I++SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 913 ARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R GY Q + P +TVY ++ Y + + + IE ++EL I
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTG----IS 129
Query: 971 SLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L G P LS Q++R +A L +P +I +DEP S LD
Sbjct: 130 ELAGRYP--HELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 27/212 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L +S G + G +G+GK+TL+ +++G +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 80
Query: 917 GYCEQNDIHSPFVT-VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--------P 967
G Q F V++ + + A P+ D +++ ME V L P
Sbjct: 81 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 136
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 137 FF-----------LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
G+TV+ H + + D + ++++G +
Sbjct: 186 TLGKTVILISHDIET-VINHVDRVVVLEKGKK 216
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGGE++RV ++V L +DE GLD ++ +++ + G VI +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
+ D +++L G+ V+ G R +EF E
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLE 227
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 17/208 (8%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN-- 922
RPG + L+G +G GK+T + +L+G++ G P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GRF--DDPPEWQEIIKYFRGSELQNYF 156
Query: 923 ------DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE--LKPLIQSLVG 974
DI + Y + A ++ P + E K+ +E+ E V+ +K L V
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRA-IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL 215
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
+ LS + +R I + V + DEP+S LD + + +R+ + + V+
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIY 1062
C H + + D + + G +Y
Sbjct: 276 CVEHD--LSVLDYLSDFVCIIYGVPSVY 301
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 28/171 (16%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+LN G F + +MG +G GKTTL+ +L+G + G + +S P+K
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK----- 421
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
I F L + + R F+ + +KPL +
Sbjct: 422 ----------IAPKFPGTVRQLFF-----------KKIRGQFLNPQFQTDVVKPLRIDDI 460
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
D+ ++ +SGGE +RV + PA +DE S LDS +++ + N TA
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQG 407
I TY L+D IV++G
Sbjct: 522 FIVEHDFIMATY--------LADKVIVFEG 543
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 27/210 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L +S G + G +G+GK+TL+ +++G +G++ G KK R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 82
Query: 917 GYCEQNDIHSPFVT-VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--------P 967
G Q F V++ + + A P+ D +++ ME V L P
Sbjct: 83 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 138
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 139 FF-----------LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 187
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G+TV+ H + + D + ++++G
Sbjct: 188 TLGKTVILISHDIET-VINHVDRVVVLEKG 216
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGGE++RV ++V L +DE GLD ++ +++ + G VI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
+ D +++L G+ V+ G R +EF E
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTR---MEFLE 229
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETF 912
+L +S + PG L+G +G+GK+TL LS G I I G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTL---LSAFLRLLNTEGEIQIDGVSWDSITLEQW 92
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ G Q + ++S R + ++ I +V + V L+ +I+
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 973 VG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
G + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 1027 VDTGRTVVC 1035
++C
Sbjct: 202 FADCTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 38/188 (20%)
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARISGYCEQ--------N 922
++G +G+GKTTL+ +SG +GNI I+G +K + R S + N
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVN 91
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
DI V +YE E+ R +F+E + L + +++ + LS
Sbjct: 92 DI----VYLYE------------ELKGLDRDLFLEMLKALKLGEEILRR-----KLYKLS 130
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H+ +
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--L 185
Query: 1043 DIFDAFDE 1050
D+ + + E
Sbjct: 186 DMLNLYKE 193
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 973 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLM-----KRGGQEIYVG 1064
G TV+ H +D+ D + + RGGQ + VG
Sbjct: 898 GDTVLVIEHN--LDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 901 TISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
T GY K+E+ A + G ++ + ++V E+L + L L E +++ ++ + E+
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTA--MSVTEALAFFDGLELT-EKEAQIARLILREIR 482
Query: 961 E-LVELKPLIQSLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 1016
+ L L+ + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 1017 AIVMRTVRNTVDTGRTVVCTIH 1038
++ T+++ D G T++ H
Sbjct: 543 DRLIATLKSMRDLGNTLIVVEH 564
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 973 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLM-----KRGGQEIYVG 1064
G TV+ H +D+ D + + RGGQ + VG
Sbjct: 898 GDTVLVIEHN--LDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 901 TISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
T GY K+E+ A + G ++ + VT E+L + L L E +++ ++ + E+
Sbjct: 426 TCQGYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELT-EKEAQIARLILREIR 482
Query: 961 E-LVELKPLIQSLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 1016
+ L L+ + + L +G LS + +R+ +A ++ + + + +DEP+ GL R
Sbjct: 483 DRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542
Query: 1017 AIVMRTVRNTVDTGRTVVCTIH 1038
++ T+++ D G T++ H
Sbjct: 543 DRLIATLKSXRDLGNTLIVVEH 564
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 973 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLM-----KRGGQEIYVG 1064
G TV+ H +D+ D + + RGGQ + VG
Sbjct: 596 GDTVLVIEHN--LDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD-- 885
S+ + SVD +++ + G E L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 886 ---VLSGRKTG 893
VL+ R G
Sbjct: 689 LAAVLANRLNG 699
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 949 SETRKMFIEEVMELVE----LKPLIQSLV---------GLPGVSGLSTEQRKRLTIAVEL 995
SE M IEE E E + +++LV G P + LS + +R+ +A EL
Sbjct: 820 SEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPT-LSGGEAQRVKLASEL 878
Query: 996 ---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049
++ +DEPT+GL ++ + VD G TV+ H +D+ D
Sbjct: 879 QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHN--LDVIKTSD 933
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 322 RGISGGERKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375
RG+SGGER ++ E+ G A F+DE + LD+ +I + LK+ +N
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK- 336
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
VI + E + FD + ++ G +V +
Sbjct: 337 --VIVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 322 RGISGGERKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375
RG+SGGER ++ E+ G A F+DE + LD+ +I + LK+ +N
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK- 336
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIV 404
VI + E + FD + ++ G +V
Sbjct: 337 --VIVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
+LLN + + G +G GK+TLM ++ N + G+P ++E
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA----------NGQVDGFPTQEECR-- 496
Query: 915 ISGYCEQN--DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ Y E + HS ++ L E T++ ++++E +
Sbjct: 497 -TVYVEHDIDGTHSD----------TSVLDFVFESGVGTKEAIKDKLIEF----GFTDEM 541
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ +P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
TRK IEE ++ L P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1011 LD 1012
LD
Sbjct: 932 LD 933
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
QR RL + I +DEPT GL R +++T++ D G TV+ H
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+G P + LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1030 GRTVVCTIHQPGIDIFDAFDELF-LMKRGGQE 1060
G TV+ H +D+ D + L GG+E
Sbjct: 858 GNTVIVIEHN--LDVIKNADHIIDLGPEGGKE 887
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 981 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1037
LS + +R+ +A EL + ++ +DEPT+GL + R + VD G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1038 HQ 1039
H+
Sbjct: 791 HK 792
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 844 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM 884
++L GV + L + L F GV+T++ GVSG+GK+TL+
Sbjct: 503 LELNGVTRNNL---DNLDVRFPLGVMTSVTGVSGSGKSTLV 540
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTL---MDVLSGRK 891
L G F PGVLT + G +GKTTL +LSG+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 893
L LS +P V+ A++G+ GK+ LM+ L+G+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 1004 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063
MD+ G+++ A IV+ R ++G+ + IH+ I+I A DEL ++ +
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPK---- 158
Query: 1064 GPLGRHSCQL 1073
PL + QL
Sbjct: 159 -PLRDYCTQL 167
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
TRK IEE + L P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1011 LD 1012
LD
Sbjct: 932 LD 933
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
TRK IEE + L P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 870 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 925
Query: 1011 LD 1012
LD
Sbjct: 926 LD 927
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 322 RGISGGERKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375
RG+SGGER ++ E+ G A F+DE + L + +I + LK+ +N
Sbjct: 295 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIASVLKELERLNK- 353
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
VI + E + FD + ++ G +V +
Sbjct: 354 --VIVFITCDREFSEAFDRKLRITGGVVVNE 382
>pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|B Chain B, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|C Chain C, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
pdb|2JAH|D Chain D, Biochemical And Structural Analysis Of The Clavulanic Acid
Dehydeogenase (Cad) From Streptomyces Clavuligerus
Length = 247
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 26 VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLGLQQRQ 82
V AFS++LR+E E ++ +E T LR + T+ E +E +S + Q Q
Sbjct: 162 VNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEXYEQRISQIRKLQAQ 218
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 926
G L A+ G +GAGKT+L+ ++ G G I SG RIS +C QN
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RIS-FCSQNSWIM 111
Query: 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986
P T+ E+++ ++ S + +EE + K I ++G G++ LS QR
Sbjct: 112 P-GTIKENIIGVSYDEY--RYRSVIKACQLEEDISKFAEKDNI--VLGEGGIT-LSGGQR 165
Query: 987 KRLTIAVELVANPSIIFMDEPTSGLD 1012
R+++A + + + +D P LD
Sbjct: 166 ARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 926
G L A+ G +GAGKT+L+ ++ G G I SG RIS +C QN
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RIS-FCSQNSWIM 111
Query: 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986
P T+ E+++ ++ S + +EE + K I ++G G++ LS QR
Sbjct: 112 P-GTIKENIIGVSYDEY--RYRSVIKACQLEEDISKFAEKDNI--VLGEGGIT-LSGGQR 165
Query: 987 KRLTIAVELVANPSIIFMDEPTSGLD 1012
R+++A + + + +D P LD
Sbjct: 166 ARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|B Chain B, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|C Chain C, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
pdb|2JAP|D Chain D, Clavulanic Acid Dehydrogenase: Structural And Biochemical
Analysis Of The Final Step In The Biosynthesis Of The
Beta- Lactamase Inhibitor Clavulanic Acid
Length = 247
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 26 VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLGLQQRQ 82
V AFS++LR+E E ++ +E T LR + T+ E +E +S + Q Q
Sbjct: 162 VNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQ 218
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 893
LS +P V+ A++G+ GK+ LM+ L+G+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL------LTELARRENEAGIKPDPDID 282
A ++ H+N G + V+ET+ + +C G+ + L E N IK D +
Sbjct: 137 ALMNLHNNEAGRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALK 196
Query: 283 VYM-KAIATEGQEAN---VITDYYLKVLGLEVCADTMVGDEMIRGISGG 327
+ M K G A+ I D + V G E+ D ++ IS G
Sbjct: 197 LEMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLG 245
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEI 350
GDE+ + GE K +TTGE++ G L FM EI
Sbjct: 117 GDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEI 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,084,978
Number of Sequences: 62578
Number of extensions: 1409191
Number of successful extensions: 3403
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3093
Number of HSP's gapped (non-prelim): 262
length of query: 1206
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1096
effective length of database: 8,089,757
effective search space: 8866373672
effective search space used: 8866373672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)