Query 000971
Match_columns 1206
No_of_seqs 845 out of 6330
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3.1E-72 1.1E-76 750.1 50.2 215 827-1066 1075-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1.2E-66 4E-71 694.7 54.4 215 827-1066 1029-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 4.9E-57 1.7E-61 556.6 32.6 202 828-1068 357-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 6.2E-57 2.1E-61 550.7 30.5 202 828-1068 287-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-55 5.6E-60 536.4 32.8 216 828-1080 269-486 (538)
6 2iw3_A Elongation factor 3A; a 100.0 5.9E-55 2E-59 552.9 35.1 183 165-412 448-633 (986)
7 3ux8_A Excinuclease ABC, A sub 100.0 5.8E-54 2E-58 541.3 37.3 214 164-412 30-296 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 1.6E-53 5.6E-58 523.9 31.0 201 855-1080 361-568 (608)
9 3tui_C Methionine import ATP-b 100.0 2.9E-42 1E-46 396.2 27.5 218 828-1066 24-248 (366)
10 3tif_A Uncharacterized ABC tra 100.0 1.1E-41 3.9E-46 373.4 27.7 220 829-1067 2-230 (235)
11 3rlf_A Maltose/maltodextrin im 100.0 1.5E-41 5.2E-46 392.8 27.8 213 829-1066 4-218 (381)
12 3gfo_A Cobalt import ATP-bindi 100.0 9.6E-42 3.3E-46 381.2 25.2 216 828-1067 7-229 (275)
13 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-41 3.9E-46 391.4 25.8 214 828-1066 4-223 (359)
14 2pcj_A ABC transporter, lipopr 100.0 2.3E-41 7.8E-46 368.5 26.8 212 828-1065 4-222 (224)
15 2olj_A Amino acid ABC transpor 100.0 3.1E-41 1E-45 375.0 27.7 214 828-1066 24-243 (263)
16 1b0u_A Histidine permease; ABC 100.0 3.3E-41 1.1E-45 375.6 26.9 213 829-1066 7-237 (262)
17 1vpl_A ABC transporter, ATP-bi 100.0 6E-41 2.1E-45 371.5 26.7 214 828-1066 15-230 (256)
18 1g6h_A High-affinity branched- 100.0 4.8E-41 1.6E-45 373.7 24.8 217 828-1066 7-237 (257)
19 3pih_A Uvrabc system protein A 100.0 2E-40 6.7E-45 420.8 32.9 196 856-1066 599-897 (916)
20 3tui_C Methionine import ATP-b 100.0 1.6E-40 5.5E-45 381.8 28.2 207 164-413 40-252 (366)
21 2yyz_A Sugar ABC transporter, 100.0 1.3E-40 4.3E-45 384.1 26.0 213 829-1066 4-218 (359)
22 1z47_A CYSA, putative ABC-tran 100.0 9.2E-41 3.1E-45 384.3 24.7 215 828-1066 14-230 (355)
23 1ji0_A ABC transporter; ATP bi 100.0 1.5E-40 5.2E-45 365.9 25.3 213 828-1066 6-223 (240)
24 4g1u_C Hemin import ATP-bindin 100.0 1.1E-40 3.9E-45 371.6 24.2 213 828-1067 11-233 (266)
25 2it1_A 362AA long hypothetical 100.0 1.5E-40 5.3E-45 383.8 26.1 213 829-1066 4-218 (362)
26 1g29_1 MALK, maltose transport 100.0 2.6E-40 8.8E-45 384.2 27.6 214 828-1066 3-224 (372)
27 1v43_A Sugar-binding transport 100.0 2.4E-40 8.2E-45 383.6 25.3 213 829-1066 12-226 (372)
28 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-40 5E-45 384.0 23.4 213 829-1066 4-225 (353)
29 2r6f_A Excinuclease ABC subuni 100.0 1.4E-39 4.9E-44 408.7 33.6 195 856-1066 639-937 (972)
30 3fvq_A Fe(3+) IONS import ATP- 100.0 5.8E-40 2E-44 377.2 25.5 206 165-413 17-227 (359)
31 3rlf_A Maltose/maltodextrin im 100.0 8.5E-40 2.9E-44 378.2 26.7 207 165-414 16-223 (381)
32 2yz2_A Putative ABC transporte 100.0 8.8E-40 3E-44 365.2 23.6 217 829-1066 3-222 (266)
33 3d31_A Sulfate/molybdate ABC t 100.0 6E-40 2.1E-44 377.3 22.6 209 829-1066 2-212 (348)
34 2d2e_A SUFC protein; ABC-ATPas 100.0 9.4E-40 3.2E-44 361.8 23.3 218 829-1066 4-228 (250)
35 2ihy_A ABC transporter, ATP-bi 100.0 5.8E-40 2E-44 368.2 21.4 219 826-1066 19-247 (279)
36 2vf7_A UVRA2, excinuclease ABC 100.0 5.1E-39 1.7E-43 404.8 32.2 195 856-1066 512-822 (842)
37 2onk_A Molybdate/tungstate ABC 100.0 7.8E-40 2.7E-44 359.4 21.6 208 829-1066 2-211 (240)
38 3tif_A Uncharacterized ABC tra 100.0 3.1E-39 1.1E-43 354.1 25.7 207 165-412 18-232 (235)
39 1z47_A CYSA, putative ABC-tran 100.0 5E-39 1.7E-43 369.8 26.3 206 165-413 28-234 (355)
40 3nh6_A ATP-binding cassette SU 100.0 2.4E-39 8.2E-44 366.3 23.0 212 826-1066 51-272 (306)
41 3gfo_A Cobalt import ATP-bindi 100.0 5E-39 1.7E-43 359.3 25.2 207 165-414 21-233 (275)
42 2yyz_A Sugar ABC transporter, 100.0 6.1E-39 2.1E-43 370.1 26.5 206 165-413 16-222 (359)
43 2it1_A 362AA long hypothetical 100.0 6.5E-39 2.2E-43 370.2 26.7 206 165-413 16-222 (362)
44 2zu0_C Probable ATP-dependent 100.0 7.1E-39 2.4E-43 357.8 25.9 221 828-1067 20-250 (267)
45 4g1u_C Hemin import ATP-bindin 100.0 6.9E-39 2.4E-43 357.3 24.6 204 165-413 24-236 (266)
46 2nq2_C Hypothetical ABC transp 100.0 1.5E-38 5.1E-43 352.2 27.0 207 828-1066 4-212 (253)
47 2olj_A Amino acid ABC transpor 100.0 1.3E-38 4.4E-43 353.9 26.6 205 165-413 37-247 (263)
48 2pcj_A ABC transporter, lipopr 100.0 8.3E-39 2.8E-43 348.3 24.3 200 165-409 17-223 (224)
49 2ygr_A Uvrabc system protein A 100.0 4.1E-38 1.4E-42 397.1 33.7 195 856-1066 657-955 (993)
50 1g29_1 MALK, maltose transport 100.0 1.3E-38 4.5E-43 369.8 26.3 206 165-413 16-228 (372)
51 1v43_A Sugar-binding transport 100.0 1.1E-38 3.7E-43 369.8 24.9 206 165-413 24-230 (372)
52 1b0u_A Histidine permease; ABC 100.0 1E-38 3.5E-43 355.5 23.6 205 165-413 19-241 (262)
53 3d31_A Sulfate/molybdate ABC t 100.0 1.3E-38 4.5E-43 366.2 24.8 201 167-413 15-216 (348)
54 2qi9_C Vitamin B12 import ATP- 100.0 7.4E-39 2.5E-43 353.3 21.6 203 829-1066 5-217 (249)
55 2ff7_A Alpha-hemolysin translo 100.0 9.2E-39 3.1E-43 352.8 21.4 212 827-1066 6-227 (247)
56 1vpl_A ABC transporter, ATP-bi 100.0 2.8E-38 9.5E-43 350.1 25.2 206 165-414 28-235 (256)
57 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-38 4.2E-43 367.9 22.6 204 167-413 20-229 (353)
58 1g6h_A High-affinity branched- 100.0 1.7E-38 5.9E-43 353.1 23.0 216 165-411 20-239 (257)
59 1sgw_A Putative ABC transporte 100.0 3.3E-39 1.1E-43 347.7 16.7 198 828-1055 10-207 (214)
60 2ixe_A Antigen peptide transpo 100.0 1.3E-38 4.5E-43 356.2 20.4 214 828-1066 16-240 (271)
61 1ji0_A ABC transporter; ATP bi 100.0 3.7E-38 1.3E-42 346.8 23.5 204 165-413 19-227 (240)
62 2onk_A Molybdate/tungstate ABC 100.0 4.7E-38 1.6E-42 345.2 23.9 201 167-413 14-215 (240)
63 3nh6_A ATP-binding cassette SU 100.0 8.6E-38 2.9E-42 353.6 24.6 208 165-414 67-277 (306)
64 1mv5_A LMRA, multidrug resista 100.0 2.8E-38 9.4E-43 348.7 16.5 210 829-1066 2-221 (243)
65 2pjz_A Hypothetical protein ST 100.0 2.1E-37 7.3E-42 344.1 21.7 206 829-1066 2-210 (263)
66 2yz2_A Putative ABC transporte 100.0 2.6E-37 8.9E-42 345.2 22.3 205 165-414 20-227 (266)
67 2ghi_A Transport protein; mult 100.0 3.1E-37 1.1E-41 343.2 20.7 211 828-1066 17-237 (260)
68 2ihy_A ABC transporter, ATP-bi 100.0 7.4E-37 2.5E-41 343.0 20.7 209 165-412 34-250 (279)
69 2ff7_A Alpha-hemolysin translo 100.0 1.6E-36 5.6E-41 334.8 22.8 200 165-413 22-231 (247)
70 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-36 4.3E-41 336.7 21.2 205 165-411 16-230 (250)
71 2ixe_A Antigen peptide transpo 100.0 1.5E-36 5.3E-41 339.4 20.3 209 165-414 32-245 (271)
72 3gd7_A Fusion complex of cysti 100.0 4.7E-37 1.6E-41 358.2 16.7 211 827-1066 18-237 (390)
73 2qi9_C Vitamin B12 import ATP- 100.0 2.2E-36 7.6E-41 333.5 19.8 197 166-412 14-220 (249)
74 2nq2_C Hypothetical ABC transp 100.0 9.6E-36 3.3E-40 329.7 24.4 197 165-412 18-215 (253)
75 2pze_A Cystic fibrosis transme 100.0 4E-36 1.4E-40 328.2 21.0 200 828-1066 6-213 (229)
76 2zu0_C Probable ATP-dependent 100.0 1E-35 3.5E-40 332.3 24.0 221 165-422 33-261 (267)
77 2cbz_A Multidrug resistance-as 100.0 4.8E-36 1.6E-40 329.2 20.5 199 829-1066 4-212 (237)
78 1mv5_A LMRA, multidrug resista 100.0 2E-36 6.8E-41 333.9 15.9 202 165-414 15-226 (243)
79 2pjz_A Hypothetical protein ST 100.0 1.1E-35 3.8E-40 330.3 22.0 194 165-413 18-214 (263)
80 4a82_A Cystic fibrosis transme 100.0 8.8E-36 3E-40 368.9 21.5 213 826-1066 337-559 (578)
81 2yl4_A ATP-binding cassette SU 100.0 3.9E-35 1.3E-39 364.6 25.9 217 827-1067 339-566 (595)
82 3qf4_A ABC transporter, ATP-bi 100.0 8.2E-36 2.8E-40 369.3 19.5 213 826-1066 339-561 (587)
83 2ghi_A Transport protein; mult 100.0 2.4E-35 8.1E-40 328.1 21.1 200 165-414 33-242 (260)
84 3b5x_A Lipid A export ATP-bind 100.0 1.3E-35 4.3E-40 368.1 20.8 213 827-1066 340-562 (582)
85 3b60_A Lipid A export ATP-bind 100.0 2.1E-35 7.2E-40 366.1 22.7 213 827-1066 340-562 (582)
86 3gd7_A Fusion complex of cysti 100.0 1.1E-35 3.9E-40 346.5 16.1 200 165-414 34-242 (390)
87 3qf4_B Uncharacterized ABC tra 100.0 2.8E-35 9.6E-40 365.6 20.5 211 827-1066 353-573 (598)
88 1sgw_A Putative ABC transporte 100.0 2.2E-35 7.7E-40 317.8 15.6 188 166-403 23-210 (214)
89 2cbz_A Multidrug resistance-as 100.0 3.7E-35 1.3E-39 322.2 17.3 196 165-414 18-217 (237)
90 2pze_A Cystic fibrosis transme 100.0 1E-34 3.5E-39 317.1 19.7 196 165-413 21-217 (229)
91 4a82_A Cystic fibrosis transme 100.0 2E-34 6.9E-39 356.7 22.6 208 165-414 354-564 (578)
92 2yl4_A ATP-binding cassette SU 100.0 3.8E-34 1.3E-38 355.7 23.5 203 165-413 357-569 (595)
93 4f4c_A Multidrug resistance pr 100.0 1.2E-33 4E-38 378.2 28.5 213 827-1066 414-636 (1321)
94 3qf4_A ABC transporter, ATP-bi 100.0 3.7E-34 1.3E-38 354.5 19.9 208 165-414 356-566 (587)
95 3b60_A Lipid A export ATP-bind 100.0 7.4E-34 2.5E-38 352.2 22.3 202 165-414 356-567 (582)
96 2bbs_A Cystic fibrosis transme 100.0 5E-34 1.7E-38 321.3 18.6 195 828-1066 40-242 (290)
97 3b5x_A Lipid A export ATP-bind 100.0 6.6E-34 2.3E-38 352.7 19.5 202 165-414 356-567 (582)
98 3qf4_B Uncharacterized ABC tra 100.0 4.9E-34 1.7E-38 354.4 16.3 208 165-414 368-578 (598)
99 2bbs_A Cystic fibrosis transme 100.0 6E-33 2E-37 312.5 17.5 194 166-413 52-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 1.1E-32 3.9E-37 367.8 21.6 214 826-1066 385-608 (1284)
101 3bk7_A ABC transporter ATP-bin 100.0 1E-29 3.4E-34 313.5 20.2 191 167-414 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-29 3.9E-34 310.1 18.2 191 167-414 301-493 (538)
103 2iw3_A Elongation factor 3A; a 100.0 4.2E-29 1.4E-33 317.0 22.2 193 828-1066 435-630 (986)
104 3ozx_A RNAse L inhibitor; ATP 100.0 3.9E-29 1.3E-33 304.5 19.4 192 167-413 283-476 (538)
105 3j16_B RLI1P; ribosome recycli 100.0 9.9E-29 3.4E-33 303.9 19.3 192 166-414 361-559 (608)
106 3ux8_A Excinuclease ABC, A sub 100.0 3.4E-29 1.2E-33 315.6 14.3 205 854-1067 31-294 (670)
107 1tf7_A KAIC; homohexamer, hexa 100.0 2.8E-29 9.5E-34 307.6 8.6 155 861-1057 275-443 (525)
108 3pih_A Uvrabc system protein A 99.9 1.2E-23 4E-28 267.5 22.5 109 298-413 784-901 (916)
109 4aby_A DNA repair protein RECN 99.9 3.3E-24 1.1E-28 255.5 16.4 203 855-1063 49-380 (415)
110 2r6f_A Excinuclease ABC subuni 99.9 4.1E-24 1.4E-28 269.0 17.4 107 299-413 825-941 (972)
111 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.1E-26 3.9E-31 277.3 -6.0 196 858-1079 129-350 (460)
112 2ygr_A Uvrabc system protein A 99.9 9.8E-24 3.4E-28 266.6 17.3 108 299-414 843-960 (993)
113 2vf7_A UVRA2, excinuclease ABC 99.9 9.6E-24 3.3E-28 266.2 16.6 108 298-413 709-826 (842)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.2E-26 2.1E-30 270.9 -4.6 185 169-413 129-337 (460)
115 4aby_A DNA repair protein RECN 99.9 1.1E-22 3.9E-27 242.3 16.4 236 165-407 48-381 (415)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.2E-22 1.8E-26 231.6 15.0 82 978-1062 277-364 (365)
117 3b85_A Phosphate starvation-in 99.9 5.2E-25 1.8E-29 236.2 -10.9 143 853-1041 12-159 (208)
118 4gp7_A Metallophosphoesterase; 99.9 4.2E-23 1.4E-27 215.1 2.4 143 859-1041 1-160 (171)
119 1e69_A Chromosome segregation 99.9 9.1E-22 3.1E-26 226.2 12.2 87 978-1067 217-309 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.3E-20 7.8E-25 217.7 14.6 84 319-405 275-364 (365)
121 1tq4_A IIGP1, interferon-induc 99.8 4.9E-23 1.7E-27 241.5 -7.9 175 854-1056 36-253 (413)
122 3b85_A Phosphate starvation-in 99.8 1E-22 3.5E-27 218.4 -6.0 151 162-388 10-161 (208)
123 1znw_A Guanylate kinase, GMP k 99.8 6.6E-24 2.2E-28 228.3 -16.9 183 854-1058 9-205 (207)
124 1ye8_A Protein THEP1, hypothet 99.8 5.7E-21 1.9E-25 200.0 4.1 148 869-1065 2-162 (178)
125 1tq4_A IIGP1, interferon-induc 99.8 6.2E-22 2.1E-26 232.3 -6.6 173 164-396 35-248 (413)
126 2v9p_A Replication protein E1; 99.8 1.5E-22 5E-27 228.2 -11.5 158 165-419 113-271 (305)
127 1e69_A Chromosome segregation 99.8 1.3E-19 4.4E-24 208.2 10.8 88 320-411 216-310 (322)
128 4gp7_A Metallophosphoesterase; 99.8 5.4E-20 1.8E-24 191.6 3.8 66 323-390 83-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 2.9E-20 9.8E-25 194.6 1.2 149 180-405 2-159 (178)
130 3sop_A Neuronal-specific septi 99.8 9.9E-21 3.4E-25 211.4 -5.5 147 869-1040 4-150 (270)
131 3b9q_A Chloroplast SRP recepto 99.8 4E-20 1.4E-24 209.6 -1.2 154 857-1039 90-256 (302)
132 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.9E-19 6.3E-24 206.9 3.3 131 856-1058 160-291 (330)
133 2v9p_A Replication protein E1; 99.7 1.1E-21 3.6E-26 221.2 -16.3 169 829-1080 102-271 (305)
134 1z6g_A Guanylate kinase; struc 99.7 3.8E-22 1.3E-26 216.3 -20.4 177 855-1052 11-205 (218)
135 2o5v_A DNA replication and rep 99.7 1.1E-17 3.9E-22 193.2 15.1 86 318-412 259-354 (359)
136 3b9q_A Chloroplast SRP recepto 99.7 2E-19 6.7E-24 203.9 -0.0 174 168-403 90-284 (302)
137 3sop_A Neuronal-specific septi 99.7 2E-19 6.8E-24 200.8 -0.4 145 180-382 4-148 (270)
138 3qkt_A DNA double-strand break 99.7 3.5E-17 1.2E-21 189.2 18.3 77 978-1056 246-328 (339)
139 2og2_A Putative signal recogni 99.7 2.5E-19 8.4E-24 206.7 -0.7 153 858-1039 148-313 (359)
140 1cr0_A DNA primase/helicase; R 99.7 3.3E-18 1.1E-22 194.2 4.5 182 855-1057 23-235 (296)
141 1z6g_A Guanylate kinase; struc 99.7 8.5E-21 2.9E-25 205.7 -16.4 174 165-400 10-193 (218)
142 2dpy_A FLII, flagellum-specifi 99.7 1.4E-19 4.8E-24 215.0 -7.5 174 854-1066 145-339 (438)
143 2og2_A Putative signal recogni 99.7 1.8E-18 6.1E-23 199.5 1.5 173 169-403 148-341 (359)
144 2dpy_A FLII, flagellum-specifi 99.7 3.2E-19 1.1E-23 211.9 -5.0 180 164-412 144-342 (438)
145 1znw_A Guanylate kinase, GMP k 99.7 3.6E-20 1.2E-24 199.1 -12.3 184 165-399 9-202 (207)
146 2o5v_A DNA replication and rep 99.7 7.2E-17 2.5E-21 186.5 11.9 79 980-1067 265-352 (359)
147 3aez_A Pantothenate kinase; tr 99.7 4.6E-18 1.6E-22 193.5 -2.3 128 170-356 81-209 (312)
148 3aez_A Pantothenate kinase; tr 99.7 3.7E-18 1.3E-22 194.3 -3.2 157 864-1055 87-243 (312)
149 2pt7_A CAG-ALFA; ATPase, prote 99.6 1.9E-17 6.4E-22 190.2 2.0 132 167-403 160-292 (330)
150 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.1E-16 1.4E-20 157.5 10.9 76 978-1055 55-136 (148)
151 1tf7_A KAIC; homohexamer, hexa 99.6 7.2E-19 2.5E-23 215.3 -11.9 167 854-1056 25-209 (525)
152 2o8b_B DNA mismatch repair pro 99.6 3.8E-17 1.3E-21 211.6 3.0 153 854-1061 769-930 (1022)
153 3qkt_A DNA double-strand break 99.6 2.5E-15 8.4E-20 173.8 17.7 78 319-399 244-327 (339)
154 2ehv_A Hypothetical protein PH 99.6 2.4E-17 8.2E-22 181.7 0.7 168 857-1056 19-207 (251)
155 2jeo_A Uridine-cytidine kinase 99.6 1.3E-17 4.4E-22 184.0 -1.9 156 852-1040 10-165 (245)
156 2eyu_A Twitching motility prot 99.6 8.1E-17 2.8E-21 178.8 4.0 132 856-1056 16-147 (261)
157 3thx_A DNA mismatch repair pro 99.6 8.3E-16 2.8E-20 196.6 12.0 148 854-1066 649-808 (934)
158 1cr0_A DNA primase/helicase; R 99.6 1.3E-16 4.5E-21 181.0 4.0 186 164-403 21-237 (296)
159 4ad8_A DNA repair protein RECN 99.6 1.7E-15 5.7E-20 185.2 12.8 78 320-401 393-473 (517)
160 4a74_A DNA repair and recombin 99.6 9.8E-17 3.3E-21 174.5 0.2 158 856-1057 13-200 (231)
161 2jeo_A Uridine-cytidine kinase 99.6 1.1E-16 3.7E-21 176.6 0.3 140 163-357 10-149 (245)
162 2obl_A ESCN; ATPase, hydrolase 99.6 6.3E-17 2.2E-21 186.6 -2.4 175 854-1066 59-250 (347)
163 3thx_B DNA mismatch repair pro 99.6 8.7E-16 3E-20 195.8 6.2 145 853-1051 659-805 (918)
164 3thx_A DNA mismatch repair pro 99.6 2.8E-15 9.4E-20 191.9 9.3 89 322-412 720-811 (934)
165 3asz_A Uridine kinase; cytidin 99.5 1.7E-17 5.7E-22 178.5 -11.6 145 864-1040 3-161 (211)
166 1ewq_A DNA mismatch repair pro 99.5 9.2E-16 3.1E-20 193.0 1.8 133 854-1048 566-704 (765)
167 2obl_A ESCN; ATPase, hydrolase 99.5 8.9E-16 3E-20 177.0 1.5 181 164-412 58-253 (347)
168 2qnr_A Septin-2, protein NEDD5 99.5 9.8E-17 3.3E-21 182.2 -7.6 156 853-1041 10-168 (301)
169 1pzn_A RAD51, DNA repair and r 99.5 5.7E-16 1.9E-20 179.4 -1.7 163 856-1063 119-307 (349)
170 1rj9_A FTSY, signal recognitio 99.5 1E-15 3.4E-20 173.5 -0.6 147 866-1041 101-259 (304)
171 4a74_A DNA repair and recombin 99.5 1.8E-15 6.3E-20 164.4 1.4 153 173-401 20-200 (231)
172 1wb9_A DNA mismatch repair pro 99.5 4.9E-15 1.7E-19 187.5 4.5 154 854-1063 595-750 (800)
173 3asz_A Uridine kinase; cytidin 99.5 5.9E-16 2E-20 166.4 -4.5 145 175-383 3-160 (211)
174 1nlf_A Regulatory protein REPA 99.5 4.3E-14 1.5E-18 158.8 10.3 151 863-1041 26-182 (279)
175 3jvv_A Twitching mobility prot 99.5 7.1E-15 2.4E-19 170.0 3.0 128 863-1057 119-246 (356)
176 2qnr_A Septin-2, protein NEDD5 99.5 2.3E-15 8E-20 170.8 -2.2 156 164-385 10-167 (301)
177 1pzn_A RAD51, DNA repair and r 99.5 2.7E-15 9.3E-20 173.7 -1.8 168 166-408 118-309 (349)
178 2w0m_A SSO2452; RECA, SSPF, un 99.5 9.1E-15 3.1E-19 158.9 2.5 167 855-1057 10-192 (235)
179 2o8b_B DNA mismatch repair pro 99.5 4.7E-15 1.6E-19 192.1 0.1 159 165-410 769-938 (1022)
180 2i3b_A HCR-ntpase, human cance 99.5 2.4E-16 8.3E-21 166.2 -9.8 159 178-407 1-169 (189)
181 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 1.3E-13 4.4E-18 139.2 10.3 83 318-403 52-142 (148)
182 2i3b_A HCR-ntpase, human cance 99.5 4.3E-16 1.5E-20 164.3 -8.3 161 867-1067 1-172 (189)
183 2ehv_A Hypothetical protein PH 99.5 4E-15 1.4E-19 163.9 -1.1 71 327-399 121-206 (251)
184 3szr_A Interferon-induced GTP- 99.5 1.6E-15 5.6E-20 187.9 -5.1 165 181-414 48-237 (608)
185 3thx_B DNA mismatch repair pro 99.5 6.3E-14 2.2E-18 178.8 9.1 155 165-405 660-816 (918)
186 1w1w_A Structural maintenance 99.4 3.2E-13 1.1E-17 161.3 14.0 75 322-399 332-410 (430)
187 2eyu_A Twitching motility prot 99.4 1.3E-14 4.4E-19 161.1 1.7 133 166-400 15-147 (261)
188 1pui_A ENGB, probable GTP-bind 99.4 6.6E-15 2.2E-19 157.6 -2.0 180 829-1032 4-202 (210)
189 1rj9_A FTSY, signal recognitio 99.4 1.4E-14 4.9E-19 164.0 0.5 148 177-384 101-257 (304)
190 1ewq_A DNA mismatch repair pro 99.4 3.2E-14 1.1E-18 179.1 3.5 132 165-392 566-704 (765)
191 3szr_A Interferon-induced GTP- 99.4 1.9E-14 6.4E-19 178.4 -0.5 136 870-1041 48-197 (608)
192 2qag_C Septin-7; cell cycle, c 99.4 7.8E-15 2.7E-19 172.7 -4.0 163 828-1040 11-177 (418)
193 2w0m_A SSO2452; RECA, SSPF, un 99.4 6.4E-13 2.2E-17 144.3 9.6 78 323-401 103-192 (235)
194 4ad8_A DNA repair protein RECN 99.4 6.9E-13 2.4E-17 162.0 9.6 76 979-1057 395-473 (517)
195 3kta_B Chromosome segregation 99.4 1.7E-12 5.7E-17 134.5 10.7 85 978-1065 62-152 (173)
196 1wb9_A DNA mismatch repair pro 99.4 1.2E-13 4E-18 174.9 2.5 156 165-407 595-751 (800)
197 2cvh_A DNA repair and recombin 99.4 4.2E-12 1.4E-16 136.7 14.2 154 855-1057 7-185 (220)
198 2qag_B Septin-6, protein NEDD5 99.4 6E-14 2.1E-18 164.3 -0.5 173 857-1039 30-218 (427)
199 1s96_A Guanylate kinase, GMP k 99.3 3.3E-14 1.1E-18 153.6 -3.3 128 861-1041 10-141 (219)
200 1nlf_A Regulatory protein REPA 99.3 1.2E-12 4E-17 147.1 8.4 153 174-387 26-183 (279)
201 2ewv_A Twitching motility prot 99.3 5.3E-13 1.8E-17 155.7 3.2 131 856-1055 127-257 (372)
202 2bdt_A BH3686; alpha-beta prot 99.3 3.3E-16 1.1E-20 165.4 -22.5 166 867-1066 2-179 (189)
203 1zp6_A Hypothetical protein AT 99.3 1E-14 3.5E-19 153.9 -11.8 152 864-1037 6-158 (191)
204 2gza_A Type IV secretion syste 99.3 1.1E-12 3.8E-17 152.5 3.8 138 856-1058 164-303 (361)
205 1s96_A Guanylate kinase, GMP k 99.3 2.5E-13 8.4E-18 146.7 -1.8 149 173-417 11-163 (219)
206 2qag_C Septin-7; cell cycle, c 99.3 7.9E-13 2.7E-17 155.7 1.8 150 164-383 23-176 (418)
207 3jvv_A Twitching mobility prot 99.3 8.6E-13 2.9E-17 152.5 1.6 59 333-401 188-246 (356)
208 1lw7_A Transcriptional regulat 99.2 7.6E-15 2.6E-19 171.5 -16.2 169 167-398 157-341 (365)
209 2bdt_A BH3686; alpha-beta prot 99.2 2.7E-14 9.1E-19 150.7 -11.0 169 178-412 2-182 (189)
210 3kta_B Chromosome segregation 99.2 3.4E-11 1.2E-15 124.6 12.5 91 320-414 61-158 (173)
211 1zp6_A Hypothetical protein AT 99.2 1.2E-12 4.2E-17 137.9 1.4 141 174-368 5-146 (191)
212 1lw7_A Transcriptional regulat 99.2 2.4E-14 8.2E-19 167.3 -13.6 163 856-1055 157-342 (365)
213 1n0w_A DNA repair protein RAD5 99.2 3.6E-12 1.2E-16 139.4 4.6 157 857-1057 13-209 (243)
214 1nij_A Hypothetical protein YJ 99.2 3.6E-15 1.2E-19 170.7 -20.3 156 868-1041 5-190 (318)
215 2rcn_A Probable GTPase ENGC; Y 99.2 1.4E-12 4.6E-17 150.0 0.7 122 857-995 206-328 (358)
216 1htw_A HI0065; nucleotide-bind 99.2 5.4E-13 1.8E-17 136.4 -2.6 78 165-249 20-97 (158)
217 3auy_A DNA double-strand break 99.2 3.2E-11 1.1E-15 141.1 11.9 78 978-1058 278-362 (371)
218 2cvh_A DNA repair and recombin 99.2 1.5E-11 5E-16 132.4 8.2 77 324-401 85-185 (220)
219 2gza_A Type IV secretion syste 99.2 5.3E-12 1.8E-16 146.8 4.3 79 167-248 164-246 (361)
220 2f1r_A Molybdopterin-guanine d 99.2 3.4E-13 1.2E-17 139.7 -6.5 112 179-345 3-125 (171)
221 2bbw_A Adenylate kinase 4, AK4 99.2 6.2E-14 2.1E-18 154.5 -13.8 147 866-1030 26-200 (246)
222 2bbw_A Adenylate kinase 4, AK4 99.2 6.2E-13 2.1E-17 146.5 -5.8 157 177-371 26-198 (246)
223 2qag_B Septin-6, protein NEDD5 99.1 5.1E-12 1.7E-16 148.0 0.5 158 168-368 30-203 (427)
224 1pui_A ENGB, probable GTP-bind 99.1 1.2E-12 4.1E-17 139.9 -4.5 67 301-371 131-198 (210)
225 1udx_A The GTP-binding protein 99.1 2.4E-12 8.2E-17 151.4 -2.8 171 857-1052 147-320 (416)
226 2yhs_A FTSY, cell division pro 99.1 7.8E-12 2.7E-16 148.1 1.2 154 857-1039 283-448 (503)
227 1htw_A HI0065; nucleotide-bind 99.1 3.5E-12 1.2E-16 130.4 -1.6 78 854-937 20-97 (158)
228 2kjq_A DNAA-related protein; s 99.1 3.7E-11 1.3E-15 121.6 5.3 45 996-1041 81-126 (149)
229 2ewv_A Twitching motility prot 99.1 1.3E-12 4.4E-17 152.5 -7.5 167 167-357 127-317 (372)
230 1w1w_A Structural maintenance 99.1 1.7E-10 5.9E-15 137.6 10.2 76 979-1056 332-411 (430)
231 2rcn_A Probable GTPase ENGC; Y 99.1 1.5E-11 5.2E-16 141.2 0.9 121 168-338 206-328 (358)
232 1n0w_A DNA repair protein RAD5 99.1 5.2E-11 1.8E-15 130.2 5.1 29 173-201 19-47 (243)
233 2f1r_A Molybdopterin-guanine d 99.1 8.4E-13 2.9E-17 136.7 -8.9 138 868-1030 3-163 (171)
234 1nij_A Hypothetical protein YJ 99.1 5.3E-13 1.8E-17 152.7 -12.0 165 178-393 4-197 (318)
235 2qm8_A GTPase/ATPase; G protei 99.1 1E-12 3.5E-17 151.4 -10.0 163 854-1027 42-259 (337)
236 1odf_A YGR205W, hypothetical 3 99.1 1.6E-11 5.5E-16 138.1 -0.1 132 176-358 29-169 (290)
237 3ec2_A DNA replication protein 99.0 1.3E-10 4.5E-15 121.3 6.5 48 995-1042 97-145 (180)
238 3e70_C DPA, signal recognition 99.0 8.7E-12 3E-16 142.5 -3.1 144 864-1040 126-279 (328)
239 2yhs_A FTSY, cell division pro 99.0 5.5E-11 1.9E-15 140.9 3.0 81 168-251 283-372 (503)
240 3e70_C DPA, signal recognition 99.0 3.2E-11 1.1E-15 137.8 0.8 75 174-251 125-208 (328)
241 1odf_A YGR205W, hypothetical 3 99.0 1.9E-11 6.6E-16 137.5 -2.6 128 865-1015 29-169 (290)
242 3lda_A DNA repair protein RAD5 99.0 2.6E-10 8.8E-15 133.6 6.6 156 857-1057 167-363 (400)
243 1udx_A The GTP-binding protein 99.0 1.3E-11 4.4E-16 145.3 -5.0 170 168-395 147-319 (416)
244 2qm8_A GTPase/ATPase; G protei 99.0 4.8E-12 1.6E-16 145.7 -9.1 181 165-370 42-259 (337)
245 2yv5_A YJEQ protein; hydrolase 99.0 2.6E-11 8.9E-16 137.5 -3.3 123 863-994 161-301 (302)
246 2oap_1 GSPE-2, type II secreti 98.9 7.6E-13 2.6E-17 160.0 -17.5 177 855-1048 248-457 (511)
247 3auy_A DNA double-strand break 98.9 2.3E-09 7.8E-14 125.3 11.4 97 299-399 245-359 (371)
248 2oap_1 GSPE-2, type II secreti 98.9 4.6E-12 1.6E-16 153.2 -11.8 85 165-252 247-331 (511)
249 1p9r_A General secretion pathw 98.9 3.2E-11 1.1E-15 142.1 -4.3 137 165-346 156-314 (418)
250 2yv5_A YJEQ protein; hydrolase 98.9 2.2E-10 7.6E-15 129.9 2.0 124 176-336 163-300 (302)
251 1sxj_E Activator 1 40 kDa subu 98.9 7.4E-10 2.5E-14 128.4 6.4 164 870-1079 39-204 (354)
252 1p9r_A General secretion pathw 98.9 4E-12 1.4E-16 149.8 -13.8 133 855-1004 157-315 (418)
253 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 5.5E-12 1.9E-16 147.0 -13.9 169 173-410 15-209 (392)
254 3ec2_A DNA replication protein 98.8 9.9E-10 3.4E-14 114.6 4.1 48 339-387 98-146 (180)
255 2x8a_A Nuclear valosin-contain 98.8 1.1E-11 3.6E-16 138.8 -11.9 142 165-366 33-190 (274)
256 3c8u_A Fructokinase; YP_612366 98.8 1.7E-11 5.8E-16 131.4 -10.2 148 864-1050 19-168 (208)
257 3c8u_A Fructokinase; YP_612366 98.8 7E-11 2.4E-15 126.6 -5.6 121 175-351 19-140 (208)
258 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 5.7E-12 2E-16 146.8 -15.5 172 862-1068 15-210 (392)
259 1lvg_A Guanylate kinase, GMP k 98.8 1.3E-12 4.5E-17 139.0 -19.7 57 334-400 116-173 (198)
260 3lda_A DNA repair protein RAD5 98.8 2.3E-09 7.8E-14 125.6 5.1 62 340-402 272-364 (400)
261 2dr3_A UPF0273 protein PH0284; 98.8 1.2E-09 3.9E-14 119.7 0.9 68 989-1056 117-196 (247)
262 1lvg_A Guanylate kinase, GMP k 98.7 1.7E-12 5.7E-17 138.2 -21.4 56 991-1055 116-172 (198)
263 1t9h_A YLOQ, probable GTPase E 98.7 1E-09 3.6E-14 123.7 0.3 118 862-987 168-302 (307)
264 1sq5_A Pantothenate kinase; P- 98.7 3.3E-10 1.1E-14 129.0 -4.8 73 176-253 78-155 (308)
265 2kjq_A DNAA-related protein; s 98.7 8.6E-09 3E-13 104.2 5.5 34 166-204 29-62 (149)
266 1u0l_A Probable GTPase ENGC; p 98.7 7.4E-10 2.5E-14 125.6 -2.8 73 174-250 165-259 (301)
267 1u0l_A Probable GTPase ENGC; p 98.7 5.4E-10 1.9E-14 126.7 -4.4 102 863-973 165-289 (301)
268 2r6a_A DNAB helicase, replicat 98.7 1.9E-08 6.3E-13 120.8 8.3 179 855-1058 191-400 (454)
269 1sq5_A Pantothenate kinase; P- 98.7 2.8E-10 9.6E-15 129.5 -7.2 129 855-1013 49-199 (308)
270 1sxj_E Activator 1 40 kDa subu 98.7 1.5E-08 5.2E-13 117.3 6.9 135 181-386 39-175 (354)
271 1in4_A RUVB, holliday junction 98.6 1.7E-10 5.8E-15 132.9 -10.6 154 165-372 31-195 (334)
272 2x8a_A Nuclear valosin-contain 98.6 2.4E-11 8.1E-16 136.0 -17.3 128 854-1009 33-164 (274)
273 1in4_A RUVB, holliday junction 98.6 2.7E-10 9.3E-15 131.2 -10.1 150 854-1028 31-194 (334)
274 1vma_A Cell division protein F 98.5 3.2E-08 1.1E-12 111.9 4.3 112 860-1026 97-211 (306)
275 1ls1_A Signal recognition part 98.5 2.6E-07 8.9E-12 104.2 11.6 118 858-1026 91-209 (295)
276 3euj_A Chromosome partition pr 98.5 1.5E-08 5E-13 120.8 1.3 53 165-221 17-69 (483)
277 2zr9_A Protein RECA, recombina 98.5 1.8E-07 6.1E-12 107.9 10.0 78 987-1065 126-237 (349)
278 1vma_A Cell division protein F 98.5 1E-07 3.5E-12 107.7 6.6 112 171-369 97-211 (306)
279 3k1j_A LON protease, ATP-depen 98.5 7E-09 2.4E-13 128.9 -4.3 159 165-368 47-227 (604)
280 2dr3_A UPF0273 protein PH0284; 98.5 5E-07 1.7E-11 98.5 11.0 60 340-400 127-196 (247)
281 1t9h_A YLOQ, probable GTPase E 98.4 6.1E-08 2.1E-12 109.3 3.1 72 173-248 168-248 (307)
282 2px0_A Flagellar biosynthesis 98.4 2.9E-07 1E-11 103.7 8.2 158 865-1080 103-265 (296)
283 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-08 4.5E-13 108.0 -2.7 70 172-248 1-73 (205)
284 1oix_A RAS-related protein RAB 98.4 3.3E-08 1.1E-12 104.0 0.4 38 987-1026 152-189 (191)
285 2px0_A Flagellar biosynthesis 98.4 2.7E-07 9.1E-12 104.1 7.5 142 176-406 103-247 (296)
286 2r6a_A DNAB helicase, replicat 98.4 4.1E-07 1.4E-11 109.1 9.2 183 164-403 189-401 (454)
287 1iy2_A ATP-dependent metallopr 98.4 1.2E-09 4.2E-14 122.3 -12.7 76 166-248 63-142 (278)
288 2ius_A DNA translocase FTSK; n 98.4 8E-09 2.7E-13 123.9 -6.7 164 860-1042 160-344 (512)
289 3k1j_A LON protease, ATP-depen 98.4 1.2E-08 4.1E-13 126.8 -5.8 160 853-1025 46-227 (604)
290 1ixz_A ATP-dependent metallopr 98.3 1.9E-09 6.4E-14 119.0 -12.0 76 166-248 39-118 (254)
291 2ius_A DNA translocase FTSK; n 98.3 8.4E-08 2.9E-12 115.1 0.8 166 170-386 159-343 (512)
292 1iy2_A ATP-dependent metallopr 98.3 9.5E-10 3.2E-14 123.2 -15.5 123 855-1001 63-190 (278)
293 1oix_A RAS-related protein RAB 98.3 1.7E-07 5.8E-12 98.5 2.3 43 324-368 146-188 (191)
294 3tr0_A Guanylate kinase, GMP k 98.3 2.6E-08 8.7E-13 105.8 -4.2 67 861-933 1-70 (205)
295 3euj_A Chromosome partition pr 98.3 8.9E-08 3.1E-12 114.0 -0.2 51 855-908 18-68 (483)
296 1ls1_A Signal recognition part 98.3 1.5E-06 5.1E-11 97.9 9.8 117 169-368 91-208 (295)
297 1ixz_A ATP-dependent metallopr 98.3 1.3E-09 4.6E-14 120.2 -15.1 123 855-1001 39-166 (254)
298 2zr9_A Protein RECA, recombina 98.2 7.3E-07 2.5E-11 102.8 6.3 30 173-202 56-85 (349)
299 3hr8_A Protein RECA; alpha and 98.2 1E-06 3.5E-11 101.3 6.1 32 173-204 56-87 (356)
300 2ce7_A Cell division protein F 98.2 1.9E-06 6.3E-11 103.1 8.3 59 983-1041 93-165 (476)
301 3lnc_A Guanylate kinase, GMP k 98.2 4.3E-07 1.5E-11 98.5 1.9 40 165-204 14-54 (231)
302 1qhl_A Protein (cell division 98.1 7.9E-08 2.7E-12 103.8 -5.0 59 172-234 22-91 (227)
303 2f9l_A RAB11B, member RAS onco 98.1 1.1E-06 3.8E-11 92.7 4.0 37 989-1027 130-166 (199)
304 3hr8_A Protein RECA; alpha and 98.0 2.1E-06 7.1E-11 98.8 4.3 35 856-890 48-84 (356)
305 3lnc_A Guanylate kinase, GMP k 98.0 1.3E-06 4.3E-11 94.8 2.4 38 855-892 15-53 (231)
306 1qhl_A Protein (cell division 98.0 2.5E-07 8.6E-12 99.8 -4.2 59 861-922 22-91 (227)
307 4eun_A Thermoresistant glucoki 98.0 3.1E-07 1E-11 97.4 -3.6 71 173-250 24-96 (200)
308 2qtf_A Protein HFLX, GTP-bindi 98.0 1.5E-06 5.2E-11 100.7 1.7 148 869-1028 181-353 (364)
309 2ce7_A Cell division protein F 97.9 1.4E-05 4.9E-10 95.4 9.4 34 167-202 40-73 (476)
310 4eun_A Thermoresistant glucoki 97.9 3.9E-07 1.3E-11 96.6 -4.2 41 861-907 23-63 (200)
311 2xau_A PRE-mRNA-splicing facto 97.9 1E-05 3.5E-10 102.9 8.0 72 979-1051 189-262 (773)
312 2qtf_A Protein HFLX, GTP-bindi 97.9 5.7E-06 2E-10 95.9 4.7 157 180-371 181-353 (364)
313 2f9l_A RAB11B, member RAS onco 97.9 7.9E-06 2.7E-10 86.1 5.1 38 331-370 129-166 (199)
314 4a1f_A DNAB helicase, replicat 97.8 9.2E-06 3.1E-10 92.7 5.0 128 856-1038 35-164 (338)
315 2e87_A Hypothetical protein PH 97.8 2.9E-05 1E-09 89.9 9.0 61 979-1041 230-293 (357)
316 2j41_A Guanylate kinase; GMP, 97.8 5.6E-06 1.9E-10 87.6 2.6 33 173-205 1-33 (207)
317 3kta_A Chromosome segregation 97.8 7.5E-06 2.6E-10 85.0 3.4 36 169-205 18-53 (182)
318 3bh0_A DNAB-like replicative h 97.8 4.4E-05 1.5E-09 86.8 9.9 35 855-889 56-90 (315)
319 1zu4_A FTSY; GTPase, signal re 97.8 4.1E-06 1.4E-10 95.3 0.7 81 167-250 94-187 (320)
320 3nwj_A ATSK2; P loop, shikimat 97.8 2.2E-06 7.6E-11 94.0 -1.8 52 828-891 17-72 (250)
321 2dhr_A FTSH; AAA+ protein, hex 97.7 4.9E-07 1.7E-11 108.7 -7.9 75 166-247 54-132 (499)
322 4a1f_A DNAB helicase, replicat 97.7 5.7E-05 1.9E-09 86.2 8.2 139 164-400 32-170 (338)
323 3vaa_A Shikimate kinase, SK; s 97.7 1.2E-05 4.2E-10 84.9 2.3 41 163-203 10-50 (199)
324 3a00_A Guanylate kinase, GMP k 97.6 9.3E-06 3.2E-10 84.9 1.1 27 178-204 1-27 (186)
325 3uie_A Adenylyl-sulfate kinase 97.6 4.6E-06 1.6E-10 88.2 -2.7 51 165-219 12-64 (200)
326 4e22_A Cytidylate kinase; P-lo 97.5 6.1E-06 2.1E-10 90.8 -2.3 62 167-234 19-95 (252)
327 2dy1_A Elongation factor G; tr 97.5 2.6E-05 8.8E-10 97.6 3.0 132 861-1041 3-137 (665)
328 2xau_A PRE-mRNA-splicing facto 97.5 7.1E-05 2.4E-09 95.2 6.5 74 321-395 188-262 (773)
329 2dhr_A FTSH; AAA+ protein, hex 97.5 8.7E-07 3E-11 106.5 -10.7 75 855-935 54-132 (499)
330 1fnn_A CDC6P, cell division co 97.5 0.0002 6.8E-09 83.3 9.6 77 997-1079 124-204 (389)
331 3vaa_A Shikimate kinase, SK; s 97.5 3.6E-05 1.2E-09 81.2 2.9 38 854-891 12-49 (199)
332 2vp4_A Deoxynucleoside kinase; 97.5 2.8E-05 9.6E-10 84.2 1.8 42 860-907 13-54 (230)
333 3kta_A Chromosome segregation 97.5 3.8E-05 1.3E-09 79.6 2.6 32 858-890 18-49 (182)
334 4e22_A Cytidylate kinase; P-lo 97.5 1E-05 3.5E-10 89.0 -1.9 63 856-923 19-96 (252)
335 1kgd_A CASK, peripheral plasma 97.5 4.6E-05 1.6E-09 79.1 3.1 38 176-215 3-40 (180)
336 1ega_A Protein (GTP-binding pr 97.5 0.00017 5.9E-09 81.3 8.1 154 864-1052 6-170 (301)
337 1zu4_A FTSY; GTPase, signal re 97.4 2.1E-05 7.3E-10 89.4 0.5 50 856-907 94-143 (320)
338 2vp4_A Deoxynucleoside kinase; 97.4 3E-05 1E-09 83.9 1.1 42 171-219 13-54 (230)
339 1jjv_A Dephospho-COA kinase; P 97.4 2.1E-05 7.1E-10 83.4 -0.3 71 982-1056 61-132 (206)
340 3t34_A Dynamin-related protein 97.4 0.00026 9.1E-09 81.9 8.9 33 855-890 25-57 (360)
341 1v5w_A DMC1, meiotic recombina 97.4 0.00046 1.6E-08 79.3 10.8 33 857-889 111-144 (343)
342 3bh0_A DNAB-like replicative h 97.4 0.00038 1.3E-08 79.0 9.8 38 164-201 54-91 (315)
343 3b9p_A CG5977-PA, isoform A; A 97.4 0.00065 2.2E-08 76.1 11.5 71 982-1052 97-184 (297)
344 3a00_A Guanylate kinase, GMP k 97.4 4.6E-05 1.6E-09 79.5 1.7 26 867-892 1-26 (186)
345 1kgd_A CASK, peripheral plasma 97.3 6.2E-05 2.1E-09 78.1 2.4 37 866-903 4-40 (180)
346 3nwj_A ATSK2; P loop, shikimat 97.3 2.1E-05 7.1E-10 86.2 -1.4 39 165-203 32-73 (250)
347 2j41_A Guanylate kinase; GMP, 97.3 7.1E-05 2.4E-09 79.0 2.6 30 863-892 2-31 (207)
348 3tau_A Guanylate kinase, GMP k 97.3 0.0001 3.5E-09 78.3 3.8 29 176-204 6-34 (208)
349 1svm_A Large T antigen; AAA+ f 97.3 3.7E-05 1.3E-09 89.2 0.1 44 165-214 156-199 (377)
350 1jjv_A Dephospho-COA kinase; P 97.3 0.00025 8.5E-09 75.0 6.4 70 324-399 60-131 (206)
351 2qt1_A Nicotinamide riboside k 97.3 0.00014 4.8E-09 77.0 4.4 45 173-240 16-60 (207)
352 2z43_A DNA repair and recombin 97.3 0.00054 1.9E-08 78.1 9.3 34 856-889 95-129 (324)
353 3uie_A Adenylyl-sulfate kinase 97.2 5E-05 1.7E-09 80.2 0.1 50 855-907 13-64 (200)
354 1knq_A Gluconate kinase; ALFA/ 97.2 9.3E-05 3.2E-09 76.1 2.0 35 176-217 6-40 (175)
355 1rz3_A Hypothetical protein rb 97.2 6.9E-05 2.4E-09 79.2 0.9 40 175-217 19-58 (201)
356 3ney_A 55 kDa erythrocyte memb 97.2 0.00011 3.8E-09 77.2 2.3 29 175-203 16-44 (197)
357 2q6t_A DNAB replication FORK h 97.2 0.0008 2.7E-08 80.1 10.2 168 856-1056 189-397 (444)
358 3b9p_A CG5977-PA, isoform A; A 97.2 0.0024 8.3E-08 71.4 13.2 28 176-203 52-79 (297)
359 3t34_A Dynamin-related protein 97.2 0.00038 1.3E-08 80.5 6.7 34 165-201 24-57 (360)
360 1svm_A Large T antigen; AAA+ f 97.1 7.3E-05 2.5E-09 86.7 0.4 37 855-891 157-193 (377)
361 3tau_A Guanylate kinase, GMP k 97.1 0.00017 5.8E-09 76.7 2.9 28 865-892 6-33 (208)
362 2e87_A Hypothetical protein PH 97.1 0.00093 3.2E-08 77.2 8.6 56 323-381 231-287 (357)
363 2z43_A DNA repair and recombin 97.0 0.0011 3.6E-08 75.6 8.7 36 167-202 95-131 (324)
364 1v5w_A DMC1, meiotic recombina 97.0 0.0022 7.4E-08 73.6 11.1 34 168-201 111-145 (343)
365 2z4s_A Chromosomal replication 97.0 0.00031 1E-08 83.6 4.1 70 997-1067 193-264 (440)
366 2qt1_A Nicotinamide riboside k 97.0 0.00038 1.3E-08 73.7 4.2 31 861-891 15-45 (207)
367 3cr8_A Sulfate adenylyltranfer 97.0 0.00015 5.2E-09 88.2 1.2 41 174-217 365-407 (552)
368 2dy1_A Elongation factor G; tr 97.0 0.00013 4.3E-09 91.4 0.2 49 172-222 3-51 (665)
369 1kag_A SKI, shikimate kinase I 97.0 0.00027 9.3E-09 72.3 2.6 27 177-203 3-29 (173)
370 3cf0_A Transitional endoplasmi 96.9 0.00064 2.2E-08 76.6 5.4 30 862-891 44-73 (301)
371 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00036 1.2E-08 70.1 3.0 28 860-888 17-44 (149)
372 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00048 1.6E-08 69.1 3.9 30 170-200 16-45 (149)
373 3tqc_A Pantothenate kinase; bi 96.9 0.00013 4.3E-09 82.8 -0.5 25 180-204 94-118 (321)
374 3ney_A 55 kDa erythrocyte memb 96.8 0.00038 1.3E-08 73.2 2.5 27 865-891 17-43 (197)
375 3kl4_A SRP54, signal recogniti 96.8 0.0016 5.4E-08 76.7 7.4 25 866-890 96-120 (433)
376 1knq_A Gluconate kinase; ALFA/ 96.8 0.00047 1.6E-08 70.7 2.4 36 865-906 6-41 (175)
377 2qby_A CDC6 homolog 1, cell di 96.7 0.00034 1.2E-08 81.0 1.5 26 865-890 43-68 (386)
378 1ypw_A Transitional endoplasmi 96.7 0.0011 3.7E-08 84.8 6.3 32 861-892 232-263 (806)
379 3cf0_A Transitional endoplasmi 96.7 0.0017 6E-08 73.0 7.3 30 174-203 45-74 (301)
380 2z4s_A Chromosomal replication 96.7 0.0003 1E-08 83.7 0.6 68 341-409 194-263 (440)
381 3tqc_A Pantothenate kinase; bi 96.7 0.00019 6.4E-09 81.4 -1.1 39 853-891 72-116 (321)
382 2p67_A LAO/AO transport system 96.7 0.00019 6.4E-09 82.5 -1.2 48 166-216 44-91 (341)
383 1fnn_A CDC6P, cell division co 96.7 0.0056 1.9E-07 70.9 11.0 28 177-204 41-70 (389)
384 2www_A Methylmalonic aciduria 96.6 0.00047 1.6E-08 79.4 1.5 40 176-218 72-111 (349)
385 4eaq_A DTMP kinase, thymidylat 96.6 0.00072 2.5E-08 73.0 2.6 38 167-204 12-52 (229)
386 3ice_A Transcription terminati 96.6 0.00032 1.1E-08 80.2 -0.3 51 828-890 133-197 (422)
387 1kag_A SKI, shikimate kinase I 96.6 0.00062 2.1E-08 69.6 1.8 26 866-891 3-28 (173)
388 3cr8_A Sulfate adenylyltranfer 96.5 0.00042 1.5E-08 84.2 0.5 43 862-906 364-408 (552)
389 4fcw_A Chaperone protein CLPB; 96.5 0.0073 2.5E-07 67.8 10.5 28 177-204 46-73 (311)
390 2pez_A Bifunctional 3'-phospho 96.5 0.00063 2.2E-08 70.1 1.5 38 176-217 3-42 (179)
391 1rz3_A Hypothetical protein rb 96.5 0.00086 3E-08 70.7 2.5 41 863-905 18-58 (201)
392 2gj8_A MNME, tRNA modification 96.5 0.0021 7.3E-08 65.6 5.2 27 865-891 2-28 (172)
393 3m6a_A ATP-dependent protease 96.5 0.00049 1.7E-08 84.1 0.3 46 167-216 98-143 (543)
394 2gj8_A MNME, tRNA modification 96.5 0.0028 9.4E-08 64.8 5.9 27 176-202 2-28 (172)
395 1ypw_A Transitional endoplasmi 96.4 0.0022 7.4E-08 82.0 6.0 32 173-204 233-264 (806)
396 1mky_A Probable GTP-binding pr 96.4 0.0026 8.8E-08 75.6 6.1 71 179-249 181-263 (439)
397 1m7g_A Adenylylsulfate kinase; 96.4 0.00067 2.3E-08 72.1 0.6 41 174-217 21-63 (211)
398 3llm_A ATP-dependent RNA helic 96.4 0.0096 3.3E-07 64.2 9.8 66 982-1049 162-228 (235)
399 3bgw_A DNAB-like replicative h 96.3 0.0053 1.8E-07 72.8 8.2 34 856-889 186-219 (444)
400 1u94_A RECA protein, recombina 96.3 0.021 7.2E-07 65.6 12.8 30 173-202 58-87 (356)
401 1m2o_B GTP-binding protein SAR 96.3 0.0026 8.9E-08 66.1 4.8 35 166-201 12-46 (190)
402 3h4m_A Proteasome-activating n 96.3 0.0044 1.5E-07 68.8 6.8 28 864-891 48-75 (285)
403 2qby_A CDC6 homolog 1, cell di 96.3 0.0014 4.8E-08 75.8 2.8 28 176-203 43-70 (386)
404 3qks_A DNA double-strand break 96.3 0.0016 5.6E-08 68.8 3.0 28 860-888 17-44 (203)
405 3qks_A DNA double-strand break 96.2 0.0023 8E-08 67.6 3.9 29 171-200 17-45 (203)
406 1y63_A LMAJ004144AAA protein; 96.2 0.0019 6.6E-08 66.9 3.2 32 170-201 2-33 (184)
407 1m2o_B GTP-binding protein SAR 96.2 0.0029 1E-07 65.7 4.6 35 855-890 12-46 (190)
408 2qor_A Guanylate kinase; phosp 96.2 0.0016 5.5E-08 68.7 2.4 29 175-203 9-37 (204)
409 1f6b_A SAR1; gtpases, N-termin 96.2 0.0012 4.2E-08 69.2 1.4 35 166-201 14-48 (198)
410 3lxx_A GTPase IMAP family memb 96.2 0.025 8.5E-07 61.0 11.9 25 180-204 31-55 (239)
411 2p67_A LAO/AO transport system 96.2 0.0011 3.7E-08 76.1 0.8 37 854-890 43-79 (341)
412 4eaq_A DTMP kinase, thymidylat 96.1 0.0021 7.1E-08 69.4 3.0 37 856-892 12-51 (229)
413 1np6_A Molybdopterin-guanine d 96.1 0.002 6.9E-08 66.3 2.7 40 179-218 7-46 (174)
414 3kl4_A SRP54, signal recogniti 96.1 0.0098 3.3E-07 70.0 8.8 35 177-214 96-130 (433)
415 1u94_A RECA protein, recombina 96.1 0.015 5.2E-07 66.8 10.2 34 856-889 50-85 (356)
416 1cke_A CK, MSSA, protein (cyti 96.1 0.0018 6.3E-08 69.2 2.3 37 178-214 5-41 (227)
417 1mky_A Probable GTP-binding pr 96.1 0.0036 1.2E-07 74.4 4.8 38 869-906 182-229 (439)
418 2b8t_A Thymidine kinase; deoxy 96.0 0.0064 2.2E-07 65.1 6.2 53 998-1055 89-150 (223)
419 2qag_A Septin-2, protein NEDD5 96.0 0.0007 2.4E-08 78.3 -1.5 77 165-250 30-106 (361)
420 1f6b_A SAR1; gtpases, N-termin 96.0 0.0022 7.5E-08 67.2 2.1 35 855-890 14-48 (198)
421 1l8q_A Chromosomal replication 95.9 0.0092 3.2E-07 67.6 7.3 46 996-1041 96-142 (324)
422 2i1q_A DNA repair and recombin 95.9 0.018 6.2E-07 65.2 9.7 34 856-889 86-120 (322)
423 2yvu_A Probable adenylyl-sulfa 95.9 0.0021 7.3E-08 66.5 1.7 30 175-204 10-39 (186)
424 2qor_A Guanylate kinase; phosp 95.8 0.0029 9.9E-08 66.7 2.3 28 864-891 9-36 (204)
425 2pez_A Bifunctional 3'-phospho 95.8 0.0031 1.1E-07 64.8 2.5 27 865-891 3-29 (179)
426 3h4m_A Proteasome-activating n 95.8 0.015 5.3E-07 64.3 8.4 28 176-203 49-76 (285)
427 2p5t_B PEZT; postsegregational 95.8 0.0021 7.1E-08 70.4 1.2 39 174-217 28-66 (253)
428 3llm_A ATP-dependent RNA helic 95.8 0.001 3.5E-08 72.0 -1.4 56 338-394 173-229 (235)
429 3lxx_A GTPase IMAP family memb 95.8 0.019 6.5E-07 61.9 8.7 43 997-1039 111-155 (239)
430 3d8b_A Fidgetin-like protein 1 95.8 0.026 8.8E-07 65.0 10.3 26 865-890 115-140 (357)
431 1cke_A CK, MSSA, protein (cyti 95.8 0.0031 1E-07 67.4 2.3 56 867-922 5-73 (227)
432 2ga8_A Hypothetical 39.9 kDa p 95.8 0.001 3.6E-08 75.7 -1.5 37 167-203 11-49 (359)
433 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0044 1.5E-07 71.9 3.7 31 171-201 15-45 (396)
434 2w58_A DNAI, primosome compone 95.7 0.0075 2.6E-07 63.2 5.1 113 866-1048 53-167 (202)
435 2ffh_A Protein (FFH); SRP54, s 95.7 0.0032 1.1E-07 73.9 2.2 45 169-218 91-135 (425)
436 2wji_A Ferrous iron transport 95.7 0.01 3.5E-07 59.9 5.6 23 180-202 5-27 (165)
437 1q57_A DNA primase/helicase; d 95.7 0.074 2.5E-06 64.2 14.1 34 856-889 231-264 (503)
438 1y63_A LMAJ004144AAA protein; 95.7 0.0046 1.6E-07 64.0 3.0 32 859-890 2-33 (184)
439 3m6a_A ATP-dependent protease 95.6 0.0024 8.3E-08 77.9 0.8 48 855-905 97-144 (543)
440 3ice_A Transcription terminati 95.6 0.0041 1.4E-07 71.2 2.5 33 170-202 166-198 (422)
441 2wji_A Ferrous iron transport 95.5 0.0098 3.3E-07 60.0 4.9 23 869-891 5-27 (165)
442 2if2_A Dephospho-COA kinase; a 95.5 0.0054 1.8E-07 64.4 3.0 21 180-200 3-23 (204)
443 3cm0_A Adenylate kinase; ATP-b 95.5 0.0065 2.2E-07 62.6 3.5 27 176-202 2-28 (186)
444 2www_A Methylmalonic aciduria 95.5 0.0048 1.7E-07 70.9 2.6 40 865-906 72-111 (349)
445 1j8m_F SRP54, signal recogniti 95.5 0.0023 7.9E-08 71.8 -0.1 44 169-216 89-133 (297)
446 1ega_A Protein (GTP-binding pr 95.4 0.0056 1.9E-07 68.8 2.9 25 178-202 8-32 (301)
447 2wjg_A FEOB, ferrous iron tran 95.4 0.008 2.7E-07 61.7 3.8 22 180-201 9-30 (188)
448 3d8b_A Fidgetin-like protein 1 95.4 0.063 2.2E-06 61.7 11.8 28 176-203 115-142 (357)
449 2v1u_A Cell division control p 95.4 0.019 6.6E-07 66.2 7.5 26 865-890 42-67 (387)
450 2q6t_A DNAB replication FORK h 95.4 0.031 1.1E-06 66.3 9.4 38 165-202 187-224 (444)
451 2wjg_A FEOB, ferrous iron tran 95.4 0.012 4.1E-07 60.4 5.0 22 869-890 9-30 (188)
452 1qhx_A CPT, protein (chloramph 95.4 0.0067 2.3E-07 62.1 3.0 26 178-203 3-28 (178)
453 2qag_A Septin-2, protein NEDD5 95.4 0.0018 6E-08 74.9 -1.6 32 854-891 30-61 (361)
454 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0025 8.7E-08 72.5 -0.5 36 855-890 10-47 (359)
455 1np6_A Molybdopterin-guanine d 95.3 0.0071 2.4E-07 62.2 2.8 38 868-905 7-45 (174)
456 3t61_A Gluconokinase; PSI-biol 95.3 0.0066 2.3E-07 63.7 2.7 25 178-202 18-42 (202)
457 3bos_A Putative DNA replicatio 95.2 0.007 2.4E-07 64.8 2.7 95 866-1040 51-148 (242)
458 2if2_A Dephospho-COA kinase; a 95.2 0.0059 2E-07 64.1 2.1 21 869-889 3-23 (204)
459 1lv7_A FTSH; alpha/beta domain 95.2 0.0067 2.3E-07 66.3 2.5 34 168-203 37-70 (257)
460 3kb2_A SPBC2 prophage-derived 95.2 0.0089 3.1E-07 60.5 3.2 24 180-203 3-26 (173)
461 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.11 3.9E-06 58.7 12.6 28 864-891 42-69 (322)
462 2ohf_A Protein OLA1, GTP-bindi 95.2 0.0088 3E-07 69.4 3.4 46 860-905 15-69 (396)
463 1sxj_C Activator 1 40 kDa subu 95.1 0.0027 9.2E-08 72.6 -1.1 40 165-204 31-72 (340)
464 2rhm_A Putative kinase; P-loop 95.1 0.0097 3.3E-07 61.6 3.2 27 176-202 3-29 (193)
465 1gvn_B Zeta; postsegregational 95.1 0.01 3.5E-07 66.2 3.5 28 176-203 31-58 (287)
466 3r20_A Cytidylate kinase; stru 95.0 0.0077 2.6E-07 64.9 2.3 24 179-202 10-33 (233)
467 2yvu_A Probable adenylyl-sulfa 95.0 0.0098 3.3E-07 61.5 3.0 30 862-891 8-37 (186)
468 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.059 2E-06 58.5 9.4 120 864-1055 36-175 (262)
469 1kht_A Adenylate kinase; phosp 95.0 0.012 4.1E-07 60.7 3.4 27 177-203 2-28 (192)
470 3bgw_A DNAB-like replicative h 94.9 0.066 2.2E-06 63.4 10.0 38 164-201 183-220 (444)
471 2ze6_A Isopentenyl transferase 94.9 0.0097 3.3E-07 65.1 2.5 25 179-203 2-26 (253)
472 1m7g_A Adenylylsulfate kinase; 94.8 0.0097 3.3E-07 63.0 2.3 30 862-891 20-49 (211)
473 2v54_A DTMP kinase, thymidylat 94.8 0.015 5.2E-07 60.7 3.6 26 177-202 3-28 (204)
474 3t61_A Gluconokinase; PSI-biol 94.7 0.0097 3.3E-07 62.4 1.9 24 867-890 18-41 (202)
475 3lw7_A Adenylate kinase relate 94.7 0.015 5.1E-07 58.8 3.2 19 180-198 3-21 (179)
476 1ly1_A Polynucleotide kinase; 94.7 0.017 5.7E-07 59.0 3.5 22 179-200 3-24 (181)
477 1q3t_A Cytidylate kinase; nucl 94.7 0.015 5.1E-07 62.7 3.3 28 175-202 13-40 (236)
478 2plr_A DTMP kinase, probable t 94.6 0.017 6E-07 60.5 3.8 28 177-204 3-30 (213)
479 3trf_A Shikimate kinase, SK; a 94.6 0.016 5.4E-07 59.6 3.3 26 177-202 4-29 (185)
480 2zej_A Dardarin, leucine-rich 94.6 0.014 4.9E-07 59.9 3.0 23 180-202 4-26 (184)
481 2zej_A Dardarin, leucine-rich 94.6 0.014 4.9E-07 59.9 2.9 22 869-890 4-25 (184)
482 3cm0_A Adenylate kinase; ATP-b 94.5 0.014 4.7E-07 60.1 2.6 25 865-889 2-26 (186)
483 3iij_A Coilin-interacting nucl 94.5 0.015 5.2E-07 59.6 2.9 27 176-202 9-35 (180)
484 2jaq_A Deoxyguanosine kinase; 94.5 0.013 4.6E-07 61.0 2.3 24 180-203 2-25 (205)
485 1ex7_A Guanylate kinase; subst 94.4 0.013 4.6E-07 60.8 2.2 25 179-203 2-26 (186)
486 2bwj_A Adenylate kinase 5; pho 94.4 0.0086 3E-07 62.3 0.7 28 175-202 9-36 (199)
487 1via_A Shikimate kinase; struc 94.4 0.013 4.5E-07 59.8 2.0 24 180-203 6-29 (175)
488 1qhx_A CPT, protein (chloramph 94.4 0.017 5.8E-07 58.9 2.9 25 867-891 3-27 (178)
489 2c95_A Adenylate kinase 1; tra 94.4 0.018 6.3E-07 59.6 3.2 27 176-202 7-33 (196)
490 1xx6_A Thymidine kinase; NESG, 94.3 0.043 1.5E-06 57.2 5.8 53 998-1055 81-142 (191)
491 2ffh_A Protein (FFH); SRP54, s 94.3 0.01 3.6E-07 69.6 1.2 46 858-907 91-136 (425)
492 2wwf_A Thymidilate kinase, put 94.3 0.02 6.9E-07 60.2 3.4 27 176-202 8-34 (212)
493 3kb2_A SPBC2 prophage-derived 94.3 0.017 5.7E-07 58.5 2.6 22 869-890 3-24 (173)
494 1sxj_C Activator 1 40 kDa subu 94.3 0.0051 1.7E-07 70.3 -1.5 38 854-891 31-70 (340)
495 1xjc_A MOBB protein homolog; s 94.3 0.016 5.4E-07 59.2 2.3 26 179-204 5-30 (169)
496 1tev_A UMP-CMP kinase; ploop, 94.2 0.025 8.5E-07 58.4 3.7 26 177-202 2-27 (196)
497 1q3t_A Cytidylate kinase; nucl 94.2 0.017 6E-07 62.2 2.5 27 864-890 13-39 (236)
498 1xp8_A RECA protein, recombina 94.2 0.089 3E-06 60.6 8.5 120 862-1038 69-209 (366)
499 1vht_A Dephospho-COA kinase; s 94.2 0.024 8.4E-07 60.0 3.6 23 178-200 4-26 (218)
500 1aky_A Adenylate kinase; ATP:A 94.2 0.024 8.2E-07 60.3 3.5 27 176-202 2-28 (220)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-72 Score=750.05 Aligned_cols=215 Identities=28% Similarity=0.407 Sum_probs=182.7
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+.. +..++|+||||+|+|||++||+||||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEE
Confidence 469999999998632 124599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 976 (1206)
+.. ..+|+.++||||++.++. -|++|||.|+. .|.+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 456788999999999886 59999998752 122222 3458999999998654 45566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
| .+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+++|.++. ...||+|++|++
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN 1290 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC
Confidence 3 5799999999999999999999999999999999999999999999865 48999999999874 577999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++.+|+.
T Consensus 1291 -G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 -GTIIEKGTH 1299 (1321)
T ss_dssp -SSEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999985
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-66 Score=694.72 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=176.6
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||++.|+.. +...+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 469999999988532 123589999999999999999999999999999999998774 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.++...+ ..+. +.++++++..++.+.. |+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 335678999999997764 79999998753211 1222 3366677777765443 4455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..|||||||||+|||||+++|+||+|||||||||+.++..|++.|+++ .+|+|||+++|+++. + ..||+|++|++
T Consensus 1169 -G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 -GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN 1244 (1284)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET
T ss_pred -CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999885 459999999999984 4 66999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 1245 -G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 -GKVKEHGTH 1253 (1284)
T ss_dssp -BEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999985
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.9e-57 Score=556.60 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=168.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.+. + ..|+++||+|++||++||+|||||||||||++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 478888887653 1 368999999999999999999999999999999997664 3687765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.+.+||++|+....+.+||.|++.+...... ...+.++++++.++|.+..++.+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999877788999998865311000 11345789999999998888874 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGP 1065 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~ 1065 (1206)
||+||++|+.+|+||||||||+|||+.++..+++.|++++ +.|.|||+++|++. .+...+|++++|+. .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 57788999999973 267788898
Q ss_pred CCc
Q 000971 1066 LGR 1068 (1206)
Q Consensus 1066 ~~~ 1068 (1206)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.2e-57 Score=550.69 Aligned_cols=202 Identities=24% Similarity=0.288 Sum_probs=167.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.+. . ..|+++||+|++||++||+||||||||||+++|+|...+ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 478888887653 1 368999999999999999999999999999999997663 3687765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
...+||++|+....+.+||.|++......... ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 23589999998777889999987643111100 1245788999999988877774 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGP 1065 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~ 1065 (1206)
||+||++|+.+|+||||||||+|||+.++..|++.|+++++ .|.|||+++|++. .+...||++++|+. .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999986 57789999999984 267888898
Q ss_pred CCc
Q 000971 1066 LGR 1068 (1206)
Q Consensus 1066 ~~~ 1068 (1206)
+.+
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-55 Score=536.40 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=172.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|++..+. . ..|+++|++|++||++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe--
Confidence 467788876653 1 357888999999999999999999999999999998764 4799987652
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.++|++|+.......||+|++.+...... .. ....++++++.++|.+..++.+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhhhcc--ch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 47999998777678999999987421111 01 1234788999999998888875 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC-cEEEEEcC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGP 1065 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g-g~~~~~g~ 1065 (1206)
||+|||||+.+|+||||||||+|||+.++..|++.|+++++ .|.|||+++|++. ++...||||++|+.+ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5999999999987 577889999999842 45556666
Q ss_pred CCcchhHHHHHHHhC
Q 000971 1066 LGRHSCQLISYFEAI 1080 (1206)
Q Consensus 1066 ~~~~~~~~~~yf~~~ 1080 (1206)
...-...+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 543223344555544
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.9e-55 Score=552.93 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=148.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC-CCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD-NHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+| |+| +|.+.. ....++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccc---cceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 333321 112468999874 67889999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCcccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1206)
.|++.+ ...+. ...++.+|+.+||. +..+..++
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 11100 01245678999994 56665554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++|+.+|++|||||||+|||+.+..++.+.|++ . +.+|+.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999986 2 4556668999999999999999999999
Q ss_pred EE-EecChHHH
Q 000971 403 IV-YQGPRELV 412 (1206)
Q Consensus 403 iv-~~G~~~~~ 412 (1206)
++ +.|+++++
T Consensus 623 iv~~~G~~~e~ 633 (986)
T 2iw3_A 623 LRKYKGNFTEF 633 (986)
T ss_dssp EEEEESCHHHH
T ss_pred eecCCCCHHHH
Confidence 97 78987765
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.8e-54 Score=541.26 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=135.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCee
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLL---------------------LALAGKLDSSLK----VSGRVTYNGHD 218 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL---------------------~~LaG~l~~~~~----~~G~I~~nG~~ 218 (1206)
..++|+|||++|++||+++|+||||||||||| +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 778887776521 25677788765
Q ss_pred CCCCCccceEEEecCCCC-------------------CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCC
Q 000971 219 MGEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279 (1206)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 279 (1206)
.... +++.++||+|... .++.+||+||+.+....... ......
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5432 2344566665432 24678999999874321100 000000
Q ss_pred ChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc-ccccccCcccccCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCH
Q 000971 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1206)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~--vlllDEptsgLDs 356 (1206)
. +.. ..+.... -.+++.+||.+. .+..++ .|||||||||+|||||+.+|+ +|+|||||+|||+
T Consensus 172 -~----~~~---~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -A----RLI---LREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -H----HHH---HHHHHHH-HHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 0 000 0001111 235888999864 455544 699999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHH
Q 000971 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (1206)
Q Consensus 357 ~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~ 412 (1206)
.+..++++.|+++.. . +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999864 3 45566688888754 569999999 89999999988765
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-53 Score=523.94 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=160.5
Q ss_pred EEeecceeeeeCC-----eEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 000971 855 VLLNGLSGAFRPG-----VLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 855 ~vL~~vs~~i~~G-----~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 929 (1206)
.+++++|+++++| |++||+||||||||||+++|+|...+. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 4788888888888 789999999999999999999976643 4541 11 23589999987766678
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs 1009 (1206)
||+|++... ++. .... ...++++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 1111 235788999999999888874 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcCCCcchhHHHHHHHhC
Q 000971 1010 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGRHSCQLISYFEAI 1080 (1206)
Q Consensus 1010 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~~~~~~~~~~~yf~~~ 1080 (1206)
|||+.++..+++.|++++ +.|.|||+++|++. ++...+||+++|+. .|++++.|++.+-......++..+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 57788999999985 278999998854333333444444
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-42 Score=396.15 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=191.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||+++|... .+...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48999999988632 1235799999999999999999999999999999999998764 489999999886
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
... ..++.+|||+|++.+++.+||+||+.|+..++ ..+.++.+++++++|+.+||.+..++.+ ..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 23567999999999999999999999987654 2456677788999999999999888874 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.++ |.|||++||+++ .+...|||+++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999987 57788999999985 799
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999985
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-41 Score=373.43 Aligned_cols=220 Identities=22% Similarity=0.344 Sum_probs=186.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+++|+.. .....+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 6789999988521 1124699999999999999999999999999999999998764 4899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCC
Q 000971 909 QET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSG 980 (1206)
Q Consensus 909 ~~~-------~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~~g~~~~~~ 980 (1206)
... .++.+|||+|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+.. ++. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 321 1235999999999999999999999976554323345666677899999999998753 665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.+|++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999985 79
Q ss_pred EEEEcCCC
Q 000971 1060 EIYVGPLG 1067 (1206)
Q Consensus 1060 ~~~~g~~~ 1067 (1206)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99888763
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.5e-41 Score=392.76 Aligned_cols=213 Identities=24% Similarity=0.369 Sum_probs=190.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. +..+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECC
Confidence 78999998873 35799999999999999999999999999999999998774 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 32 23567999999999999999999999987654 2456677788999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||++||+++ ++..++|||++|++ |+++..|+.
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999999999999765 999999999987 68899999999985 799999986
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9.6e-42 Score=381.22 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=186.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+++|+ ++..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 489999999874 123599999999999999999999999999999999998764 489999999876
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 K--Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~--~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
. . ..+++.+|||+|++. .+..+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 124567999999863 344789999999986543 3456666778999999999999888874 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||+++|+++ .+...||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 57788999999985 799
Q ss_pred EEEcCCC
Q 000971 1061 IYVGPLG 1067 (1206)
Q Consensus 1061 ~~~g~~~ 1067 (1206)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999863
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-41 Score=391.36 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=187.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++++. +..+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378999998873 35799999999999999999999999999999999998774 489999999875
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 908 ----KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ----~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 234567999999999999999999999976543 2334566778999999999999998874 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|+||||||||||||+..+..+++.|+++. +.|.|||++||+++ ++..++|||++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887764 56999999999987 68889999999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99986
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-41 Score=368.51 Aligned_cols=212 Identities=22% Similarity=0.274 Sum_probs=183.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++|+++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 378999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Ccc------ccc-ceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQE------TFA-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~~------~~~-~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
... .++ +.+|||+|++.+++.+||+||+.|....+. ...++.++.++++++.++|.+..++.+ ..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 569999999999999999999998765431 234455667899999999998888774 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ .+ ..||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999976 34 88999999985 799
Q ss_pred EEEcC
Q 000971 1061 IYVGP 1065 (1206)
Q Consensus 1061 ~~~g~ 1065 (1206)
++.|+
T Consensus 218 ~~~g~ 222 (224)
T 2pcj_A 218 VGEIT 222 (224)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 98886
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.1e-41 Score=375.05 Aligned_cols=214 Identities=26% Similarity=0.344 Sum_probs=185.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||++.+. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 389999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 K--Q---ETFARISGYCEQNDIHSPFVTVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~--~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
. . ..+++.+|||+|++.+++.+||+||+.|+. ..+ ..+.++.++.++++++.++|.+..++.+ ..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123557999999999999999999999864 222 2234455667899999999998888774 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 56778999999985 7899
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98874
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-41 Score=375.59 Aligned_cols=213 Identities=21% Similarity=0.263 Sum_probs=185.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 88999998873 24699999999999999999999999999999999998764 4899999998764
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 000971 909 Q----------------ETFARISGYCEQNDIHSPFVTVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELVELKPL-IQ 970 (1206)
Q Consensus 909 ~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~ 970 (1206)
. ..+++.+|||+|++.+++.+||+||+.|+. ..+ ..+.++.++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123457999999999999999999999864 222 23344556779999999999988 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 971 ~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
+.+ ..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 764 579999999999999999999999999999999999999999999999877999999999986 56778999
Q ss_pred EEEEecCcEEEEEcCC
Q 000971 1051 LFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1051 v~ll~~gg~~~~~g~~ 1066 (1206)
+++|++ |++++.|+.
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 799998874
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-41 Score=371.48 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=185.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.+. ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 489999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ..+++.+|||+|++.+++.+||+||+.|...++. ...++.++.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2245679999999999999999999998764431 233444567899999999999888874 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 46677999999985 78998887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.8e-41 Score=373.70 Aligned_cols=217 Identities=24% Similarity=0.287 Sum_probs=185.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.+. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 488999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHhhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000971 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWL-RLPP---------EVDSETRKMFIEEVMELVELKPLIQSLV 973 (1206)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 973 (1206)
... ..++.+|||+|++.+++.+||+||+.|+... +... ....++.++.++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 1345699999999888999999999986533 1110 0122344567899999999998888874
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE
Q 000971 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1206)
Q Consensus 974 g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l 1053 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ ++...+|++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 57788999999
Q ss_pred EecCcEEEEEcCC
Q 000971 1054 MKRGGQEIYVGPL 1066 (1206)
Q Consensus 1054 l~~gg~~~~~g~~ 1066 (1206)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 985 789998875
No 19
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-40 Score=420.82 Aligned_cols=196 Identities=27% Similarity=0.390 Sum_probs=146.1
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHH---------hhhcCCCC--C--CeeE------EEEEEcCccCCccc-----
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM---------DVLSGRKT--G--GYIT------GNITISGYPKKQET----- 911 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 911 (1206)
.|+|||++|++|+++||+||||||||||+ +.+.+... + ..+. +-+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 33333211 1 0122 34556554431100
Q ss_pred ----------------------------c-----------cceEEEeecCCCCCC-------------------------
Q 000971 912 ----------------------------F-----------ARISGYCEQNDIHSP------------------------- 927 (1206)
Q Consensus 912 ----------------------------~-----------~~~~gyv~q~~~~~~------------------------- 927 (1206)
| .+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0 012467777665554
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 000971 928 -------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 999 (1206)
Q Consensus 928 -------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P- 999 (1206)
.+||.|++.|.... .....+.++|+.+||.... .|.+ +..|||||||||.||+||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888774321 1234577899999997532 2222 4579999999999999999875
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1000 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1000 --~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
+||||||||+|||+.+...|++.|++++++|.|||+++|+++ +...+|+|++|. +||++++.|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999975 456799999993 47999999985
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-40 Score=381.77 Aligned_cols=207 Identities=22% Similarity=0.320 Sum_probs=181.4
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNH 237 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (1206)
...+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999997 9999999999876543 3579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.|+.+..+... .+....++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999876543210 1123356788999999988776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
.|||||||||+|||||+.+|++|||||||+|||+.++..|++.|+++.+.. +.+|+.++|+..++..+||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 699999999999999999999999999999999999999999999987543 45566688999999999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-40 Score=384.11 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=186.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++. ++.+|+||||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 78899998873 35699999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2233444567999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998765 999999999986 67889999999985 799999985
No 22
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.2e-41 Score=384.26 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=188.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+++++ +++.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 589999998762 123589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234567999999999999999999999986554 2345566778999999999999988874 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 67889999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-40 Score=365.89 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||++++. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 388999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCCCC
Q 000971 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~g~~~~~~LS 982 (1206)
.... .++.+||++|++.+++.+||+||+.|..... ...++.++.++++++.++ |.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 4321 2345999999999999999999999864211 122334566889999995 988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 57789999999985 78998
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8874
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.1e-40 Score=371.65 Aligned_cols=213 Identities=24% Similarity=0.310 Sum_probs=184.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|++|.+. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 589999999874 35799999999999999999999999999999999998764 379999999876
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 908 KQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 908 ~~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
... ..++.+||++|++.+++.+||+||+.|+.... ...+.++.++++++.++|.+..++.+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 432 34566899999998888899999999876433 11233456899999999999888874 479999
Q ss_pred HHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 985 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 985 qrqrl~ia~aL~~------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||||+|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57788999999985
Q ss_pred cEEEEEcCCC
Q 000971 1058 GQEIYVGPLG 1067 (1206)
Q Consensus 1058 g~~~~~g~~~ 1067 (1206)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 7999999864
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-40 Score=383.82 Aligned_cols=213 Identities=26% Similarity=0.389 Sum_probs=187.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. ++.+|+||||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78899988763 24699999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986544 2345566778999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998755 999999999986 67889999999985 799999985
No 26
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.6e-40 Score=384.16 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=188.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++++. ++.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEEC
Confidence 378899998873 35699999999999999999999999999999999998764 489999999875
Q ss_pred Cc-------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQ-------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~-------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----cc
Confidence 32 123567999999999999999999999986554 2345566678999999999999888874 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++||++. ++..++|++++|++ |+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~ 217 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999998765 999999999986 67889999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 218 i~~~g~~ 224 (372)
T 1g29_1 218 LQQVGSP 224 (372)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 9999985
No 27
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.4e-40 Score=383.56 Aligned_cols=213 Identities=23% Similarity=0.358 Sum_probs=181.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. ++.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 88999998873 35699999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2345566778999999999999988874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998765 999999999986 67889999999985 799999985
No 28
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-40 Score=384.03 Aligned_cols=213 Identities=26% Similarity=0.378 Sum_probs=187.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceE--EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLV--LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~--vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
++++||++++. ++. +|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 78899998874 124 99999999999999999999999999999999998764 48999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 907 KKQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 907 ~~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234577999999999999999999999976443 2345566778999999999999988874 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 67889999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
No 29
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.4e-39 Score=408.69 Aligned_cols=195 Identities=28% Similarity=0.371 Sum_probs=149.6
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc-C----C-----CCCC---eeEE------EEEEcCccCCccc-----
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS-G----R-----KTGG---YITG------NITISGYPKKQET----- 911 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 911 (1206)
+|+|||++|++|+++||+|+||||||||+++|+ | . ..+| .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999864 1 0 1222 2344 5889987752100
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 000971 912 -----------------FARISGYCEQNDIHS----------------------P------------------------- 927 (1206)
Q Consensus 912 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 927 (1206)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357776643221 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000971 928 -------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999 (1206)
Q Consensus 928 -------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P 999 (1206)
.+||.|++.|... . .. ...+.++|+.++|.. ..++. +..|||||||||.||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3578888876431 1 11 223578999999987 55555 3579999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1000 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1000 ---~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
+||||||||+|||+.+...+++.|++++++|.|||+++|++. ....+|++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999995 46899998874
No 30
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.8e-40 Score=377.19 Aligned_cols=206 Identities=22% Similarity=0.348 Sum_probs=178.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeC----CCCCc-cceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GEFVP-ERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1206)
.++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++ ....+ ++.++||+|+..+||
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 56999999999999999999999999999999999999998 99999999987 33323 367999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.|+.+.++... .+....++++++.+||++..|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865433211 0122356788999999988876554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 699999999999999999999999999999999999999999888776544 5666678999999999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|+++..|+++++.
T Consensus 214 ~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 214 QGRILQTASPHELY 227 (359)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEEeCHHHHH
Confidence 99999999999875
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.5e-40 Score=378.17 Aligned_cols=207 Identities=24% Similarity=0.362 Sum_probs=182.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 243 (1206)
..+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+. +.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 56999999999999999999999999999999999999998 99999999999876554 679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+..+... .+.+..++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543210 112345678899999998777555 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986544 45566689999999999999999999999
Q ss_pred EEecChHHHHH
Q 000971 404 VYQGPRELVLE 414 (1206)
Q Consensus 404 v~~G~~~~~~~ 414 (1206)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998753
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.8e-40 Score=365.17 Aligned_cols=217 Identities=21% Similarity=0.314 Sum_probs=180.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++.... ...+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 67899998874100 0015699999999999999999999999999999999998764 4899999998765
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc--cccccccCCCCCCCCCHHH
Q 000971 909 QETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--PLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~g~~~~~~LSgGq 985 (1206)
...+++.+|||+|++ ..++.+||+||+.|...... ..++.+++++++++.++|. +..++.+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 333456799999995 45677999999998643221 1122234688999999998 8888774 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||+++|+++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999997 46678999999985 78998887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6e-40 Score=377.34 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=182.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++. ++ +|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 57888888763 34 99999999999999999999999999999999998764 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ...++.+|||+|+..++|.+||+||+.|+...+.. ..+ ++++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998655421 112 56899999999999988874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.+ .|.|||++||++. ++..++|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 67889999999985 789999885
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.4e-40 Score=361.78 Aligned_cols=218 Identities=24% Similarity=0.271 Sum_probs=175.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78999998873 24699999999999999999999999999999999997211246899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCCCCC-CC
Q 000971 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-KPLIQSLVGLPGVSG-LS 982 (1206)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~~g~~~~~~-LS 982 (1206)
.. . .++.++|++|++.+++.+||+||+.+............++..+.++++++.++| .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 1 133489999999999999999999886532111112233445678999999999 57777764 35 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999987 35555 599999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 98875
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.8e-40 Score=368.21 Aligned_cols=219 Identities=23% Similarity=0.351 Sum_probs=180.9
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..++++||++.+. ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.
T Consensus 19 ~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~ 83 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGK 83 (279)
T ss_dssp CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTB
T ss_pred CceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 33589999998873 24699999999999999999999999999999999998764 4899999998
Q ss_pred cCC--c---ccccceEEEeecCCCC--CCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 000971 906 PKK--Q---ETFARISGYCEQNDIH--SPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1206)
Q Consensus 906 ~~~--~---~~~~~~~gyv~q~~~~--~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 977 (1206)
+.. . ..+++.+|||+|++.+ .+.+||+||+.|+...... .....++..+.++++++.++|.+..++.+
T Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 159 (279)
T 2ihy_A 84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI---- 159 (279)
T ss_dssp CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh----
Confidence 764 2 2245679999998754 3457999999885321100 01112334567899999999998888774
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHHhcCeEEEEe
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|| |++||+++ ++...||++++|+
T Consensus 160 -~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 160 -GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK 237 (279)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE
Confidence 4799999999999999999999999999999999999999999999997669999 99999987 4667899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 238 ~-G~i~~~g~~ 247 (279)
T 2ihy_A 238 D-GQSIQQGAV 247 (279)
T ss_dssp T-TEEEEEEEH
T ss_pred C-CEEEEECCH
Confidence 5 799998875
No 36
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.1e-39 Score=404.78 Aligned_cols=195 Identities=27% Similarity=0.349 Sum_probs=144.9
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDV-LSGRK-------TG----------------GYITG-------NITISG 904 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 904 (1206)
+|+|||++|++|+++||+|+||||||||+++ |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 5999999999999999999999999999997 76421 11 12467 789998
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 000971 905 YPKKQETF----------------------ARISGYCEQ----------------------NDIHSP------------- 927 (1206)
Q Consensus 905 ~~~~~~~~----------------------~~~~gyv~q----------------------~~~~~~------------- 927 (1206)
.++..... .|..||.++ +-.+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 76532100 011122211 111111
Q ss_pred -------------------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHH
Q 000971 928 -------------------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 928 -------------------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrq 987 (1206)
.+|+.|++.|... . ...+.+.++|+.++|... .++. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------c---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 2355555544211 1 122467899999999873 3444 3579999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcE
Q 000971 988 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQ 1059 (1206)
Q Consensus 988 rl~ia~aL~~~---P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~ 1059 (1206)
||.||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999988999999999975 34 8899999995 4689
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999874
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-40 Score=359.35 Aligned_cols=208 Identities=21% Similarity=0.310 Sum_probs=178.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.+. + +|+|||+++++ +++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 56889988773 1 49999999999 99999999999999999999998764 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ...++.+|||+|++.+++.+||+||+.|....+ . ....++.++++++.++|.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999864322 1 1222567899999999998888774 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999986 57788999999986 789998874
No 38
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.1e-39 Score=354.13 Aligned_cols=207 Identities=23% Similarity=0.270 Sum_probs=170.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-------ceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-------RTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d~~ 237 (1206)
..+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++...... +.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999997 99999999998766532 359999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc-cccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-DTMV 316 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (1206)
++.+||+||+.++.......... ..+....+..+++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------------------------------HHHHHHHHHHHHHHCCCChhhhhCC-
Confidence 99999999999976543110000 001223456789999998643 544
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+..+.| |+.++|+.. +..+||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~t-vi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT-VVVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE-EEEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEcCCHH-HHHhCCEEE
Confidence 44799999999999999999999999999999999999999999999986543555 455677776 568999999
Q ss_pred EEcCCeEEEecChHHH
Q 000971 397 LLSDGQIVYQGPRELV 412 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1206)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5e-39 Score=369.82 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=179.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999997 9999999999876544 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+..+... .+....++++++.+||++..+..+ ..
T Consensus 105 ~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 999999865432110 012235678899999998877655 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4556688999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999874
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.4e-39 Score=366.31 Aligned_cols=212 Identities=25% Similarity=0.328 Sum_probs=177.4
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
...+.++||+|.|+ +.+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 34699999999884 124699999999999999999999999999999999998764 4899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++ .||+||+.|+... .. ++.++++++.+++.+..+. .+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8754 235677999999998885 6999999986421 11 2346778888888765433 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +..|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|||+++|+++. + ..+|+|++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEE
Confidence 3 357999999999999999999999999999999999999999999999864 7999999999863 4 4599999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 263 ~-G~iv~~G~~ 272 (306)
T 3nh6_A 263 D-GCIVERGRH 272 (306)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
No 41
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5e-39 Score=359.29 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=175.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCC-CCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHD-NHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d-~~~ 238 (1206)
..+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999997 999999999984211 135799999986 345
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.|+....+... .+....++.+++.+||++..+..++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 142 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH- 142 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc-
Confidence 57999999999865432110 1122346788999999988776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|
T Consensus 143 ----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 143 ----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999986334 455666888999999999999999
Q ss_pred cCCeEEEecChHHHHH
Q 000971 399 SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1206)
++|++++.|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998753
No 42
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-39 Score=370.09 Aligned_cols=206 Identities=24% Similarity=0.343 Sum_probs=179.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876554 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++.. + .+....++.+++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999976543210 0 011234678899999998877655 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865444 4555678999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999874
No 43
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.5e-39 Score=370.24 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=179.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876554 3679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 999999865432110 012234678899999998777654 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4555678999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999874
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.1e-39 Score=357.80 Aligned_cols=221 Identities=25% Similarity=0.289 Sum_probs=181.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998873 2469999999999999999999999999999999999732225689999999875
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHhhh-hc---CCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 908 KQE---TF-ARISGYCEQNDIHSPFVTVYESLLYSAW-LR---LPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 908 ~~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~a~-lr---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
... .. ++.+||++|++.+++.+||.|++.+... ++ .....+.++.++.++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 2348999999999999999999987531 21 111223444456789999999996 56666532
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~g 1057 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999985
Q ss_pred cEEEEEcCCC
Q 000971 1058 GQEIYVGPLG 1067 (1206)
Q Consensus 1058 g~~~~~g~~~ 1067 (1206)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7999999863
No 45
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.9e-39 Score=357.25 Aligned_cols=204 Identities=27% Similarity=0.348 Sum_probs=177.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999997 99999999998776542 5699999999888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+...... .+....++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987542210 0112346778999999988776554
Q ss_pred ccCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 322 RGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~------~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.|||||||||+||+||+. +|++|+|||||+|||+.++..+++.|+++.+ .++.+|+.++|+..++..+||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 699999999999999999 9999999999999999999999999999865 45567777899999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998763
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-38 Score=352.20 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=175.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-+.++||++.+.. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE------
Confidence 3789999988730 23699999999999999999999999999999999998764 479997
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.++.+|||+|++.+++.+||+||+.|........ .......++.++++++.++|.+..++.+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 2356899999999888999999999875322110 0112334567899999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||+++|+++ .+...||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999877 999999999986 46788999999986 67 88887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 212 ~ 212 (253)
T 2nq2_C 212 T 212 (253)
T ss_dssp H
T ss_pred H
Confidence 5
No 47
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-38 Score=353.93 Aligned_cols=205 Identities=21% Similarity=0.343 Sum_probs=174.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCC--CCC---ccceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG--EFV---PERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~ 239 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 45999999999999999999999999999999999999987 999999999885 111 1356999999999999
Q ss_pred CCCHHHHHHHHh-hhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 240 EMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
.+||+||+.|+. +..+... .+....++.+++.+||.+..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999964 3222100 0112346778999999988776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999865 3 455666889999999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998774
No 48
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.3e-39 Score=348.33 Aligned_cols=200 Identities=26% Similarity=0.342 Sum_probs=169.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999999876432 1469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.|+....+... .+....++.+++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999999764332100 0112346778999999988776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. + .+|+.++|+...+ .+||+|++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-G-TSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEcCCHHHH-HhCCEEEE
Confidence 69999999999999999999999999999999999999999999998653 4 4555577777766 89999999
Q ss_pred EcCCeEEEecCh
Q 000971 398 LSDGQIVYQGPR 409 (1206)
Q Consensus 398 L~~G~iv~~G~~ 409 (1206)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 49
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=4.1e-38 Score=397.07 Aligned_cols=195 Identities=26% Similarity=0.357 Sum_probs=146.8
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc-C----CC-----CCC---eeEE------EEEEcCccCCccc-----
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS-G----RK-----TGG---YITG------NITISGYPKKQET----- 911 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~-g----~~-----~~~---~~~G------~i~i~g~~~~~~~----- 911 (1206)
+|+|||++|++|+++||+|+||||||||+++|. | .. .+| .+.| .|.+++.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999963 2 11 122 1223 3667776542100
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 000971 912 -----------------FARISGYCEQNDIHS----------------------P------------------------- 927 (1206)
Q Consensus 912 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 927 (1206)
..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 013346666642211 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000971 928 -------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999 (1206)
Q Consensus 928 -------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P 999 (1206)
.+||.|++.|...+ .. ...+.++|+.++|.. ..++. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 35777887764321 11 223578999999986 45554 3579999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1000 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1000 ---~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
+||||||||+|||+.+...+++.|+++++.|.|||+++|++. ....+|++++|. ++|++++.|+.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 347899999995 47899999985
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.3e-38 Score=369.85 Aligned_cols=206 Identities=27% Similarity=0.372 Sum_probs=178.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC------CCc-cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------FVP-ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~------~~~-~~~~~yv~Q~d~~ 237 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999997 9999999998754 333 4679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+|.+||+||+.|+.+.++... .+....++.+++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 999999999999865432110 012234678899999998877655
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999998865444 4555678999999999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999999874
No 51
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.1e-38 Score=369.76 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=172.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+||.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876554 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++.+++.+||++..+..+ ..
T Consensus 101 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999999754332110 012234678899999998877655 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4555678999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999874
No 52
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1e-38 Score=355.54 Aligned_cols=205 Identities=22% Similarity=0.314 Sum_probs=174.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC----------CC------ccceE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE----------FV------PERTA 228 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~----------~~------~~~~~ 228 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999987 9999999998751 11 13569
Q ss_pred EEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000971 229 AYISQHDNHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1206)
Q Consensus 229 ~yv~Q~d~~~~~lTV~Etl~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1206)
+||+|++.+++.+||+||+.|+. ...+... .+....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 99999999999999999999964 3221100 011234677899999
Q ss_pred Cccc-ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 308 LEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 308 L~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
|.+. .+..++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHH
Confidence 9887 776554 6999999999999999999999999999999999999999999999865 3 455566888889
Q ss_pred hHHhhcCeEEEEcCCeEEEecChHHHH
Q 000971 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 387 ~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998774
No 53
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.3e-38 Score=366.23 Aligned_cols=201 Identities=25% Similarity=0.364 Sum_probs=176.5
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999997 9999999999876544 367999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+.+.++... . ..++.+++.+||++..+..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999765332100 0 23567899999998877655 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++++
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986543 4556668899999999999999999999999
Q ss_pred ecChHHHH
Q 000971 406 QGPRELVL 413 (1206)
Q Consensus 406 ~G~~~~~~ 413 (1206)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
No 54
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.4e-39 Score=353.26 Aligned_cols=203 Identities=22% Similarity=0.347 Sum_probs=175.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+++ .+|+||||+|++|+++||+|||||||||||++|+|... +. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 678888764 27999999999999999999999999999999999876 35 99999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
. ..+++.+||++|++.+++.+||+||+.|... .. .. ++.++++++.++|.+..++.+ ..|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 2 2345679999999988889999999987521 11 11 345889999999998888764 5799999
Q ss_pred HHHHHHHHHHhhCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 986 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~-------iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
|||++|||||+.+|+ +|||||||+|||+.++..+++.|+++.++|+|||+++|+++ .+...+|++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999777999999999986 46688999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 210 ~i~~~g~~ 217 (249)
T 2qi9_C 210 KMLASGRR 217 (249)
T ss_dssp EEEEEEEH
T ss_pred EEEEeCCH
Confidence 89988875
No 55
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.2e-39 Score=352.81 Aligned_cols=212 Identities=26% Similarity=0.425 Sum_probs=176.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++++. +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46899999988730 124699999999999999999999999999999999998764 48999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-------GLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-------g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.|.. + ... ++.++++++.+++.+..+..+ +.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 643 224567999999998876 69999998752 1 112 234778899999987666542 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
.+..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++. +|+|||+++|+++. + +.||++++|++
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 246899999999999999999999999999999999999999999999985 69999999999873 4 56999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789998874
No 56
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-38 Score=350.13 Aligned_cols=206 Identities=26% Similarity=0.299 Sum_probs=175.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999886421 1357999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|.....+... .+....++.+++.+||++..+..++
T Consensus 105 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 9999998654322100 0112245678999999988776654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.. . +++|+.++|...++..+||+|++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998864 3 4556667888889999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
No 57
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-38 Score=367.93 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=176.9
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC-----CCc-cceEEEecCCCCCCCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE-----FVP-ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~-----~~~-~~~~~yv~Q~d~~~~~ 240 (1206)
+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.++||+|+..++|.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999997 9999999998754 222 4679999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+.+.++... .+....++.+++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999765432110 012234678899999998877655
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999865444 4555588999999999999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 58
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.7e-38 Score=353.09 Aligned_cols=216 Identities=25% Similarity=0.346 Sum_probs=174.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|||+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999999865432 2469999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+......+ .+. ..-. .. .... ..+....++.+++.+||++..+..++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~---~~~~----~~-~~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLN---SLFY----KK-WIPK------------EEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHH---HHHH----CS-SCCC------------CHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-ccc---cccc----cc-ccCC------------HHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 000 0000 00 0000 00112346778999999988776654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 45566678888899999999999999
Q ss_pred CeEEEecChHH
Q 000971 401 GQIVYQGPREL 411 (1206)
Q Consensus 401 G~iv~~G~~~~ 411 (1206)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
No 59
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-39 Score=347.67 Aligned_cols=198 Identities=22% Similarity=0.284 Sum_probs=171.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.+. + .+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 589999998763 3 699999999999999999999999999999999998764 489999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ..++.+|||+|++.+++.+||+||+.|....+.. .. + ++.++++++.++|.+. ++. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3466799999999999999999999987544321 11 1 3458899999999887 665 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
||+||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||+++|+++ ++...+|+++++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999999766899999999997 5677888888764
No 60
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-38 Score=356.19 Aligned_cols=214 Identities=21% Similarity=0.297 Sum_probs=173.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++.. +.+.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 48999999887410 114599999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCccccccccCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSET-----RKMFIEEVMELV--ELKPLIQSLVGLPG 977 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~~g~~~ 977 (1206)
.. ..+++.+|||+|++.+++ .||+||+.|..... ...+. ....++++++.+ +|....+..+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 224567999999998887 59999998863211 11011 122356677777 6777666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ .|+|||+++|+++ ....||++++|++
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999864 4899999999976 3456999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789998874
No 61
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-38 Score=346.80 Aligned_cols=204 Identities=23% Similarity=0.347 Sum_probs=171.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999999875543 2359999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-CcccccccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1206)
+||+||+.|+.... . .. .+....++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-K-DK---------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-C-CS---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-C-CH---------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863111 0 00 001123556788884 877666554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g-~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG-TTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 34 455557888888999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
No 62
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-38 Score=345.23 Aligned_cols=201 Identities=22% Similarity=0.315 Sum_probs=171.9
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+|+|||+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999987 9999999999865332 457999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+....+. .. ....++.+++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432210 00 01235678999999887776554 699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+..+.| |+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~t-vi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999886543444 5557888888999999999999999999
Q ss_pred ecChHHHH
Q 000971 406 QGPRELVL 413 (1206)
Q Consensus 406 ~G~~~~~~ 413 (1206)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998774
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.6e-38 Score=353.60 Aligned_cols=208 Identities=25% Similarity=0.364 Sum_probs=166.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 45999999999999999999999999999999999999997 9999999999987654 357999999988774 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+|||.|+..... .+...+..+ .+ .....+. .+....+|.+|+..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~~------------------~~---------~l~~~i~--~lp~gl~t~~~~~g- 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAAQ------------------AA---------GIHDAIM--AFPEGYRTQVGERG- 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHHH------------------HH---------TCHHHHH--HSTTGGGCEESTTS-
T ss_pred cHHHHHHhhcccCC----HHHHHHHHH------------------Hh---------CcHHHHH--hccchhhhHhcCCc-
Confidence 99999998643111 000000000 00 0011111 23445678888654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|+++.. ++|+ +.++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tv-i~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTT-IVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEE-EEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEE-EEEEcChHHHHc-CCEEEEEECC
Confidence 47999999999999999999999999999999999999999999998753 4554 457888877765 9999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++.+
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 64
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-38 Score=348.68 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=174.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++ +++.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 57889988762 123589999999999999999999999999999999998764 4799999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCCCC
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-------GLPGV 978 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-------g~~~~ 978 (1206)
. ..+++.+|||+|++.+++ .||+||+.|... + ... ++.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998877 599999987521 1 112 234788999999988776542 22 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||+++|+++ .+ ..+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999976 34 56999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88888774
No 65
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-37 Score=344.13 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=173.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|++++++.. ...+.+|+|||++++ |+++||+|||||||||||++|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 5788999887420 011469999999999 9999999999999999999999987 54 899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHH
Q 000971 909 QETFARISG-YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~~~~~~~~g-yv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqr 986 (1206)
....++.+| |++|++.+ .+||+||+.|...++ ... ++.++++++.++|. +..++.+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211145689 99999877 899999999875443 111 34588999999998 8887764 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC-eEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD-ELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d-~v~ll~~gg~~~~~g~ 1065 (1206)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++||++. .+...|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999987 4667899 9999985 78999887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 66
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-37 Score=345.20 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=172.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC-CCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD-NHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999999875432246799999985 56778999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc--ccccccccCccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE--VCADTMVGDEMI 321 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1206)
+||+.|+.... .. .. +....++.+++.+||. +..+..+
T Consensus 97 ~enl~~~~~~~-~~--------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------DR--------------DPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------TS--------------CSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CC--------------------HH--------------HHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 00 00 0112356789999998 7777655
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 455666788888888999999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 67
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.1e-37 Score=343.18 Aligned_cols=211 Identities=24% Similarity=0.381 Sum_probs=172.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++.. ..+.+|+|||++|++|+++||+||||||||||+++|+|... + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48999999887411 11359999999999999999999999999999999999875 3 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGLPG 977 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~~g~~~ 977 (1206)
.. ..+++.+|||+|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+..+ +.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 224567999999998876 699999987521 111 234677888888765432 223322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||+++|+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 8999999999873 4 56999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 789998874
No 68
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.4e-37 Score=342.98 Aligned_cols=209 Identities=28% Similarity=0.318 Sum_probs=168.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCC--CCCc---cceEEEecCCCCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG--EFVP---ERTAAYISQHDNHI- 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~--~~~~---~~~~~yv~Q~d~~~- 238 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. .... ++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999997 999999998875 3322 35699999986532
Q ss_pred -CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 239 -GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 239 -~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+.+||+||+.|+..... ..+.. + . .+....++.+++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~--~~~~~--------------~--~------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI--GVYQD--------------I--D------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc--ccccC--------------C--c------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35799999998532100 00000 0 0 0112346678999999988776654
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecCchhHHhhcCeEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV-ISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~v-i~i~q~~~~~~~~fD~vi 396 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++... +.|+. +.++|+..++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 69999999999999999999999999999999999999999999998654 55551 557888888899999999
Q ss_pred EEcCCeEEEecChHHH
Q 000971 397 LLSDGQIVYQGPRELV 412 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1206)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998876
No 69
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-36 Score=334.84 Aligned_cols=200 Identities=26% Similarity=0.395 Sum_probs=161.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999987 9999999999876543 357999999988776 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc-------cc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-------DT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------dt 314 (1206)
||+||+.|+.. .. . . ..++.+++.+||.+.. ++
T Consensus 98 tv~enl~~~~~--~~-~-~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM-S-V------------------------------------EKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC-C-H------------------------------------HHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC-C-H------------------------------------HHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999988521 00 0 0 0122344455554433 33
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.++. ....|||||||||+|||||+.+|++++|||||+|||+.+...+++.|+++. .+.| |+.++|....+. .||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~t-viivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSE-EEEECSSGGGGT-TSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCHHHHH-hCCE
Confidence 4443 356899999999999999999999999999999999999999999999873 3444 555677766664 5999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998774
No 70
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-36 Score=336.73 Aligned_cols=205 Identities=23% Similarity=0.296 Sum_probs=163.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK--LDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~--l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|. ++|+ +|+|.++|.++...... +.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 6665 99999999998765432 3489999999999
Q ss_pred CCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC-cccccccc
Q 000971 239 GEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-EVCADTMV 316 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (1206)
+.+||+||+.|+... .+... . ..+....++.+++.+|| .+..+..+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~---------------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV---------------------G-----------VAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC---------------------C-----------HHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC---------------------C-----------HHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986431 11000 0 00112345678999999 47777655
Q ss_pred cCccccc-CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh-cCe
Q 000971 317 GDEMIRG-ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDD 394 (1206)
Q Consensus 317 g~~~~~~-LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-fD~ 394 (1206)
+ . |||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+ +|+
T Consensus 141 ~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 N-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp T-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCE
Confidence 4 5 999999999999999999999999999999999999999999998743 3 45566678888888887 599
Q ss_pred EEEEcCCeEEEecChHH
Q 000971 395 IILLSDGQIVYQGPREL 411 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1206)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
No 71
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-36 Score=339.43 Aligned_cols=209 Identities=21% Similarity=0.354 Sum_probs=165.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999987 9999999998865432 356999999988777 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc--CCcccccccccCc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLEVCADTMVGDE 319 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1206)
||+|||.|+.... .. .+...+.. ....++.+++.+ ||+...+..
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~---------------------------~~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVA---------------------------MESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHH---------------------------HHHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHH---------------------------HHHhHHHHHHhhhcchhhhhcCC----
Confidence 9999999864211 00 00000000 011234567777 676555443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.... +++|+.++|....+. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999875433 445555778877765 599999999
Q ss_pred CCeEEEecChHHHHH
Q 000971 400 DGQIVYQGPRELVLE 414 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1206)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 72
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=358.16 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=177.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++|+. +...+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 35899999998741 23469999999999999999999999999999999999864 47999999988
Q ss_pred CCcc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCC------CC
Q 000971 907 KKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL------PG 977 (1206)
Q Consensus 907 ~~~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~------~~ 977 (1206)
+... .+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.+..++.+.. ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 6532 34577999999999887 69999996421 111 24578999999999888776431 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
...|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .|+|||+++|+++ ....+|++++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 5899999999975 4567999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (390)
T 3gd7_A 229 NKVRQYDSI 237 (390)
T ss_dssp TEEEEESSH
T ss_pred CEEEEECCH
Confidence 799999985
No 73
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.2e-36 Score=333.49 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=168.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999987 3 999999998765432 356999999998899999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|+.. ... . ...++.+++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~~-~-------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT-R-------------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-STT-C-------------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cCC-c-------------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999987521 000 0 113466889999988777554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 323 GISGGERKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~-------vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.|||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++..++|+|
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 799999999999999999999 9999999999999999999999998864 3 455666888888888999999
Q ss_pred EEEcCCeEEEecChHHH
Q 000971 396 ILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1206)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
No 74
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.6e-36 Score=329.66 Aligned_cols=197 Identities=16% Similarity=0.227 Sum_probs=164.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999987 999982 34699999999899999999
Q ss_pred HHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 245 ETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 245 Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
||+.|+.... +.... + . .+....++.+++.+||.+..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~-----------------~--~------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------P--K------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------C--C------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 10000 0 0 001234567899999998777654 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999886532 4556667888889999999999999999
Q ss_pred EEecChHHH
Q 000971 404 VYQGPRELV 412 (1206)
Q Consensus 404 v~~G~~~~~ 412 (1206)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
No 75
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4e-36 Score=328.23 Aligned_cols=200 Identities=21% Similarity=0.343 Sum_probs=161.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++. +++.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 4889999987741 124699999999999999999999999999999999998764 489999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCC
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLPGVSG 980 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~~~~~~ 980 (1206)
.+||++|++.+++. ||+||+.|+.. ... ..++++++.+++.+..+. .++.. +..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 28999999988875 99999987531 111 123455666666544332 22222 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||+++|+++ .+ ..+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999976 34 56999999986 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998874
No 76
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1e-35 Score=332.26 Aligned_cols=221 Identities=24% Similarity=0.297 Sum_probs=172.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++...... +.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 455 99999999988654331 3489999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccccc
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVG 317 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1206)
+.+||+|++.+..... .. .. . .+..+ ..+....++.+++.+||. +..+..++
T Consensus 110 ~~~tv~e~~~~~~~~~------------~~-~~--~-~~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAV------------RS-YR--G-QETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHH------------HH-GG--G-CCCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhh------------hh-hh--c-cccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 9999999998753210 00 00 0 00000 001123467789999996 45555443
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh-cCeEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDDII 396 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-fD~vi 396 (1206)
. .|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+ ||+|+
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEE
Confidence 1 4999999999999999999999999999999999999999999998743 3 45566678888887776 89999
Q ss_pred EEcCCeEEEecChHHHHHHHHhcCCC
Q 000971 397 LLSDGQIVYQGPRELVLEFFESMGFK 422 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1206)
+|++|++++.|+++++.. ++..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4445443
No 77
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=329.24 Aligned_cols=199 Identities=22% Similarity=0.390 Sum_probs=158.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.+.. +++.+|+|||++|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 789999988741 12458999999999999999999999999999999999876 4589999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCCCCCC
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLPGVSGL 981 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~~~~~L 981 (1206)
.+|||+|++.+ +.+||+||+.|.... ..+ ..+++++.+++.+.. +..++. .+..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH----HHHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 578999999885321 111 123444444443211 111222 24689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||+++|+++. + ..||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999985 343 58999999999874 4 57999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 89998875
No 78
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2e-36 Score=333.86 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=164.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999987 9999999999865432 457999999988777 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc------
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM------ 315 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 315 (1206)
||+||+.|+... .. . ...++.+++.+||.+..+..
T Consensus 91 tv~enl~~~~~~-~~-~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY-T-------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS-C-------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC-C-------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 0 01134567777877655433
Q ss_pred -ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 316 -VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 316 -vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
++ +.+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. .+.| |+.++|....+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t-vi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCChHHH-HhCCE
Confidence 33 3456899999999999999999999999999999999999999999999875 3444 55567776665 46999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 79
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-35 Score=330.29 Aligned_cols=194 Identities=20% Similarity=0.185 Sum_probs=165.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEE-EecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA-YISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999998875322245799 99998766 8999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCcccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1206)
+||+.|...... . ....++.+++.+||. +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998643210 0 012356788999998 7776554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC-eEEEEcCC
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD-~vilL~~G 401 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 56667888888899999 99999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 80
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.8e-36 Score=368.91 Aligned_cols=213 Identities=24% Similarity=0.375 Sum_probs=177.2
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..++++||+++++. +...+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 346999999998852 124699999999999999999999999999999999998774 4899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++. ||+||+.|+. + ..+ ++.+.++++..++.+..+ +.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8654 2356679999999988875 9999998752 1 112 234677888888765443 33443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+|||||||||+.++..+++.|+++. +|+|+|+++|+++. .+.+|++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 3 35799999999999999999999999999999999999999999999885 58999999999874 45699999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
No 81
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.9e-35 Score=364.63 Aligned_cols=217 Identities=27% Similarity=0.376 Sum_probs=179.9
Q ss_pred cE-EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 827 HS-LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 827 ~~-l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
.. ++++||+++|+.. +++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCE
Confidence 35 9999999988521 124699999999999999999999999999999999998764 4899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++ .||+||+.|+...+ ...+ ++.++++++.+++.+.. |+.+|.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 8653 235667999999998886 59999999863210 0112 34578899999987654 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++ ..+.+|++++|+
T Consensus 480 ~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 555 (595)
T 2yl4_A 480 K-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD 555 (595)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE
Confidence 4 368999999999999999999999999999999999999999999999876 899999999986 345699999998
Q ss_pred cCcEEEEEcCCC
Q 000971 1056 RGGQEIYVGPLG 1067 (1206)
Q Consensus 1056 ~gg~~~~~g~~~ 1067 (1206)
+ |+++..|+..
T Consensus 556 ~-G~i~~~g~~~ 566 (595)
T 2yl4_A 556 Q-GKITEYGKHE 566 (595)
T ss_dssp T-TEEEEEECSC
T ss_pred C-CEEEEECCHH
Confidence 5 7999999864
No 82
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.2e-36 Score=369.28 Aligned_cols=213 Identities=21% Similarity=0.306 Sum_probs=176.5
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..++++||+|+|+. +.+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCE
Confidence 346999999998852 124699999999999999999999999999999999998774 4899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++ .||+||+.|+.. ..+. +.++++++..++.+.. ++.+|.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8754 235677999999998886 499999987531 1122 2356677777765533 344454
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||+++|+++ ....+|++++|+
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~ 551 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH 551 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE
Confidence 3 45899999999999999999999999999999999999999999999974 5899999999986 346899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 552 ~-G~i~~~g~~ 561 (587)
T 3qf4_A 552 E-GKVAGFGTH 561 (587)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
No 83
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.4e-35 Score=328.07 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=160.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4589999999999999999999999999999999999864 7999999998865432 357999999988876 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-------CCcccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1206)
||+||+.|+.. .. .. + .+..+++.+ ++++..+|
T Consensus 108 tv~enl~~~~~--~~-~~-~------------------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL--DA-TD-E------------------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT--TC-CH-H------------------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC--CC-CH-H------------------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 00 00 0 011223333 34555667
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.++. .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+. +|+.++|....+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~-tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNR-TLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTS-EEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCC-EEEEEcCCHHHH-HhCCE
Confidence 6664 456899999999999999999999999999999999999999999999874 244 455567776665 46999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 84
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-35 Score=368.09 Aligned_cols=213 Identities=23% Similarity=0.324 Sum_probs=178.6
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++|+. +++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 46999999999851 114599999999999999999999999999999999998764 47999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~g~~ 976 (1206)
... ..+++.+|||+|++.+++ .||+||+.|+.. + +.+ ++.++++++.+++.+..+.+ +|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998887 499999988531 1 122 34578899999998765544 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++ ..+.+|++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 999999999986 3457999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b5x_A 554 -GEIIERGRH 562 (582)
T ss_pred -CEEEEECCH
Confidence 799999874
No 85
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.1e-35 Score=366.09 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=178.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++|+. +++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEE
Confidence 35999999998741 113599999999999999999999999999999999998764 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.|+.. + +.+ ++.++++++.+++.+..++ .+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 643 235667999999998887 499999998531 1 122 2347889999998765544 34443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++. .+.||++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865 9999999999873 457999999986
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b60_A 554 -GIIVERGTH 562 (582)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEecCH
Confidence 799999984
No 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=346.50 Aligned_cols=200 Identities=24% Similarity=0.234 Sum_probs=163.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|||+.|++||+++|+|||||||||||++|+|+++ + +|+|.++|.++....+ ++.++||+|+..+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 458999999999999999999999999999999999986 5 8999999999887654 367999999998887 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC---
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD--- 318 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 318 (1206)
||+||+.+.... . ...++.+++.+||.+..+.....
T Consensus 109 tv~enl~~~~~~----~-------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH----S-------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS----C-------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc----C-------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999642110 0 01234567788887665544331
Q ss_pred ---cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 319 ---EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 319 ---~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+ ++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCEE
Confidence 1223599999999999999999999999999999999999999999998752 23 4555567775 556779999
Q ss_pred EEEcCCeEEEecChHHHHH
Q 000971 396 ILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1206)
++|++|++++.|+++++.+
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
No 87
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-35 Score=365.56 Aligned_cols=211 Identities=26% Similarity=0.372 Sum_probs=175.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+|+|+. ++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 46999999998741 23599999999999999999999999999999999998774 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-------GLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-------g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.++.. ..+. +.++++++.+++.+..+.+. |..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 654 335678999999998886 599999987521 1122 23667777777766554432 221
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||+++|+++. + +.+|++++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 25799999999999999999999999999999999999999999999985 59999999999973 4 56999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 799999985
No 88
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-35 Score=317.81 Aligned_cols=188 Identities=18% Similarity=0.246 Sum_probs=155.1
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999987 999999999875 34567999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+....+. . . + ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~--------------------~--------------~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K--------------------V--------------N-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C--------------------C--------------C-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c--------------------h--------------H-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543210 0 0 0 1235667899999865 543 45799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ .+.| |+.++|...++..++|+|++ ..|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-iiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI-VIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE-EEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 9999999999999999999999999999999999999999998764 3444 55567777888888888764 44444
No 89
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=322.19 Aligned_cols=196 Identities=23% Similarity=0.333 Sum_probs=151.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 45899999999999999999999999999999999999987 99999998 4899999975 5689999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCccccc
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIRG 323 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~ 323 (1206)
||+.|+.... ..+. .+.. + ...+++.+++. ...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~~---~~~~------------------~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPYY---RSVI------------------Q------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTHH---HHHH------------------H------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHHH---HHHH------------------H------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999853211 0000 0000 0 00012223322 12334444 34568
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK---QHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~---~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+ .+. . +++|+.++|....+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~-~~tviivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--K-NKTRILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--T-TSEEEEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--C-CCEEEEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999884 322 2 44555567776665 57999999999
Q ss_pred CeEEEecChHHHHH
Q 000971 401 GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1206)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
No 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-34 Score=317.09 Aligned_cols=196 Identities=20% Similarity=0.302 Sum_probs=150.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46899999999999999999999999999999999999987 99999998 48999999988875 999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.|+.... . ....+... .. .....++. +....+|.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~~~------------------~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSVIK------------------AC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHHHH------------------HT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHHHH------------------Hh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9999853210 0 00000000 00 00111222 22233455553 35689
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
||||||||+||+||+.+|++++|||||+|||+.+...+++. ++++. .+ ++|+.++|....+. .||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~-~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CC-CEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 44442 24 45555677776664 5999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998774
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2e-34 Score=356.74 Aligned_cols=208 Identities=23% Similarity=0.401 Sum_probs=166.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 45899999999999999999999999999999999999997 9999999999877654 3579999999888765
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+... ...+...+.++. .+ .+.. .-.+++..||.+|+.+
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---------------------~~------~~~~--~~~lp~g~~t~~~~~g- 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---------------------AN------AHDF--IMNLPQGYDTEVGERG- 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---------------------TT------CHHH--HHTSTTGGGCBCCGGG-
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---------------------hC------cHHH--HHhCcchhhhhhccCC-
Confidence 999999886321 000111111100 00 0011 2245667889999755
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+ ++|..+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998864 3455554 67777665 569999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 92
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.8e-34 Score=355.70 Aligned_cols=203 Identities=24% Similarity=0.390 Sum_probs=165.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999997 9999999999977654 357999999998886 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------Ccccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1206)
||+||+.|+...... .+ ...++.+++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~~----------------------~~---------------~~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPSS----------------------VT---------------AEEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTTT----------------------SC---------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCccc----------------------cC---------------HHHHHHHHHHcCCHHHHHhCcccccc
Confidence 999999986421000 00 001223344444 4556789
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+|+.+ ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|+ ++|....+ ..||+
T Consensus 476 ~~~~~~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGEKG-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLV-IAHRLSTI-KNANM 550 (595)
T ss_dssp BCSSSS-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECCCHHHH-HHSSE
T ss_pred cccCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHH-HcCCE
Confidence 998754 57999999999999999999999999999999999999999999998753 455544 66766655 56999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 93
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-33 Score=378.21 Aligned_cols=213 Identities=27% Similarity=0.399 Sum_probs=182.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+.. +...+|+|||++|+||+++||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCcc
Confidence 469999999998642 234699999999999999999999999999999999998774 58999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 976 (1206)
+.. ..+++.+|||+|++.++. -|++||+.|+. .+.+ ++.+.++++..++.+. .|+.+|..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred chhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccch----HHHHHHHHHHccchhHHHcCCCCCccEecCC
Confidence 754 346778999999998875 69999999863 1222 3458888888887554 45667765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
| .+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 552 G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 552 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN 627 (1321)
T ss_dssp S-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET
T ss_pred C-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeC
Confidence 5 4799999999999999999999999999999999999999999999876 5899999999987 4678999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 628 -G~ive~Gth 636 (1321)
T 4f4c_A 628 -GQVVEVGDH 636 (1321)
T ss_dssp -TEEEEEECH
T ss_pred -CeeeccCCH
Confidence 899999985
No 94
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-34 Score=354.46 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=165.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 45899999999999999999999999999999999999997 9999999999877654 367999999998876 4
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+.... . .+...+..+. . ..+.. .-.|++..||.+|+..
T Consensus 432 tv~eni~~~~~~~---~-~~~~~~~~~~---~------------------------~~~~~--i~~l~~g~~~~~~~~~- 477 (587)
T 3qf4_A 432 TIKENLKWGREDA---T-DDEIVEAAKI---A------------------------QIHDF--IISLPEGYDSRVERGG- 477 (587)
T ss_dssp EHHHHHTTTCSSC---C-HHHHHHHHHH---T------------------------TCHHH--HHTSSSGGGCEECSSS-
T ss_pred cHHHHHhccCCCC---C-HHHHHHHHHH---h------------------------CcHHH--HHhcccchhhHhcCCC-
Confidence 9999998853210 0 0000000000 0 00111 2245667789998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+|++|||||++||+.+...+.+.|+++. .++|+ +.++|..+.+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tv-i~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTT-FIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEE-EEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEE-EEEecChHHH-HhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998863 34454 4466776655 589999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 95
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.4e-34 Score=352.24 Aligned_cols=202 Identities=23% Similarity=0.397 Sum_probs=164.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 45899999999999999999999999999999999999997 9999999999977543 357999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------Ccccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1206)
||+||+.|+.. ... . .+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~~-~-~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-EEY-S-RE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-SCC-C-HH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-CCC-C-HH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998631 000 0 00 0112222233 3446688
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+|+.. ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+ ++|....+ ..||+
T Consensus 473 ~~~~~~-~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCGGGT-TTCSE
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-EeccHHHH-HhCCE
Confidence 898654 5799999999999999999999999999999999999999999999874 3555555 66666554 57999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998764
No 96
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5e-34 Score=321.27 Aligned_cols=195 Identities=23% Similarity=0.378 Sum_probs=149.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.. +.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47888888741 248999999999999999999999999999999999876 4689999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCCCCCC
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSG 980 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~g~~~~~~ 980 (1206)
.+||++|++.+++. ||+||+. +. . ... ..++++++.+++.+..+.. ++. .+..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 28999999988874 9999997 32 1 111 1245566667765543322 221 1357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++|||||+.+|+||||||||+|||+.++..+++.+ +++. .|+|||+++|+++ .+ ..||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999864 4553 4899999999975 34 56999999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 9998875
No 97
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.6e-34 Score=352.67 Aligned_cols=202 Identities=24% Similarity=0.385 Sum_probs=164.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999997 9999999999876543 357999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------Ccccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1206)
||+||+.|+.. .. ...+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~--~~~~------------------------------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-GE--YTRE------------------------------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-CC--CCHH------------------------------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 00 0000 0122223333 3445688
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+|+.. ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+ ++|....+ ..||+
T Consensus 473 ~~~~~~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 888754 5799999999999999999999999999999999999999999999864 3555555 56665555 57999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998753
No 98
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.9e-34 Score=354.43 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=165.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999999877654 357999999987775 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+.... . .+...+ ++...+ .+..+ -.+++..||.+|+.+
T Consensus 444 tv~eni~~~~~~~---~-~~~~~~---------------------~~~~~~------~~~~~--~~~~~g~~t~~~~~g- 489 (598)
T 3qf4_B 444 TVKENLKYGNPGA---T-DEEIKE---------------------AAKLTH------SDHFI--KHLPEGYETVLTDNG- 489 (598)
T ss_dssp BHHHHHHSSSTTC---C-TTHHHH---------------------HTTTTT------CHHHH--HTSTTGGGCBCHHHH-
T ss_pred cHHHHHhcCCCCC---C-HHHHHH---------------------HHHHhC------CHHHH--HhccccccchhcCCC-
Confidence 9999999853210 0 000101 100000 01111 235566789998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|++|+|||||++||+.+...+.+.|+++. .++|+|+ ++|....+ ..||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHH-HHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999999874 3555554 66666665 459999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6e-33 Score=312.52 Aligned_cols=194 Identities=21% Similarity=0.296 Sum_probs=146.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 5899999999999999999999999999999999999987 99999998 48999999888774 9999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+. +... .. ....+.. +.. ..+..++.+ ....++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~~------------------~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSVI------------------KAC---------QLEEDISKF--AEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHHH------------------HHT---------TCHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHHH------------------HHh---------ChHHHHHhc--cccccchhcC-ccCcCC
Confidence 997 4211 00 0000000 000 001112222 2233455553 356899
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-KQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L-~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1206)
|||||||+||+||+.+|++++|||||+|||+.++..+++.+ +++. .+ .+|+.++|....+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~-~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CC-CEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 24 4555577777666 469999999999999
Q ss_pred EecChHHHH
Q 000971 405 YQGPRELVL 413 (1206)
Q Consensus 405 ~~G~~~~~~ 413 (1206)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-32 Score=367.82 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=176.7
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
...++|+||+++|+.. +...+|+|||++|+|||++||+||||||||||+++|+|...+ .+|+|.+||.
T Consensus 385 ~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 3469999999988521 124699999999999999999999999999999999998774 4899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++. ||+||+.|+.. +.+. +.++++++..++.+. .++.+|.
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhccccccccccC
Confidence 7643 3456679999999998875 99999998631 1222 346667777666543 3455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+||||||+||+.++..+++.++++. +|+|||+++|+++ ....+|+|++|+
T Consensus 523 ~-g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~ 598 (1284)
T 3g5u_A 523 R-GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD 598 (1284)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS
T ss_pred C-CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE
Confidence 4 35799999999999999999999999999999999999999999998875 5999999999986 345699999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 599 ~-G~i~~~g~~ 608 (1284)
T 3g5u_A 599 G-GVIVEQGNH 608 (1284)
T ss_dssp S-SCCCCEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1e-29 Score=313.48 Aligned_cols=191 Identities=26% Similarity=0.292 Sum_probs=160.1
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577778889999999999999999999999999999987 899876 2369999999877788999998
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
+.+.... .+ . ....++.+++.+||.+.++..++ .|||
T Consensus 438 ~~~~~~~-----~~------~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----KL------N---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHH-----HH------H---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhcc-----CC------C---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 8653110 00 0 01235667899999887776654 6999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~--G~iv 404 (1206)
||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999865444 5556688999999999999999986 8889
Q ss_pred EecChHHHHH
Q 000971 405 YQGPRELVLE 414 (1206)
Q Consensus 405 ~~G~~~~~~~ 414 (1206)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.1e-29 Score=310.08 Aligned_cols=191 Identities=26% Similarity=0.295 Sum_probs=158.5
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777778999999999999999999999999999987 899875 2369999999877788999998
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
+....... .. ....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 76431100 00 01234567888999877766554 6999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~--G~iv 404 (1206)
||||||+||++|+.+|++|+|||||+|||..+...+.+.|++++...+ .+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999999865444 4556688999999999999999986 7899
Q ss_pred EecChHHHHH
Q 000971 405 YQGPRELVLE 414 (1206)
Q Consensus 405 ~~G~~~~~~~ 414 (1206)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 103
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=4.2e-29 Score=316.98 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=158.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+...|+++.+. ++.+|+||||++++|+++||+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466678888773 3579999999999999999999999999999999995 222 44443
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++.+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999874 66788999999976 111 11 35688999999995 6677764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~g 1064 (1206)
|||++||++|+.+|+||||||||+|||+.+...+++.|++ .|.|||+++|++. .+...+|++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999987 5899999999986 57788999999986 6775 788
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 104
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.9e-29 Score=304.49 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=157.9
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999997 99998765 358999998766778999999
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
+.+..... . . . ....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~-~-~------------------~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-S------------------T-----------------SSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST-T-C------------------T-----------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc-c-c------------------h-----------------hHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 98742100 0 0 0 01124567888999887776554 6999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~--G~iv 404 (1206)
||||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++++. .+++|+.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 355666689999999999999999986 6677
Q ss_pred EecChHHHH
Q 000971 405 YQGPRELVL 413 (1206)
Q Consensus 405 ~~G~~~~~~ 413 (1206)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-29 Score=303.95 Aligned_cols=192 Identities=23% Similarity=0.246 Sum_probs=158.5
Q ss_pred eEeeceeeeEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 166 TILKDVSGIIKPG-----RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 166 ~iL~~vs~~i~~G-----~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
.+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5789999999999 779999999999999999999999987 7752 1 23468999998766667
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
.||+|++....+ +. . . ....++.+++.+||.+.++..++
T Consensus 428 ~tv~e~~~~~~~--~~---~------------------~---------------~~~~~~~~l~~l~l~~~~~~~~~--- 466 (608)
T 3j16_B 428 GTVRQLFFKKIR--GQ---F------------------L---------------NPQFQTDVVKPLRIDDIIDQEVQ--- 466 (608)
T ss_dssp SBHHHHHHHHCS--ST---T------------------T---------------SHHHHHHTHHHHTSTTTSSSBSS---
T ss_pred ccHHHHHHHHhh--cc---c------------------c---------------cHHHHHHHHHHcCChhhhcCChh---
Confidence 899998754211 10 0 0 01124567899999987776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||++|+.+|+||+|||||+|||+.+...+++.|++++...+ .+|+.++|+.+++..++|+|++|++
T Consensus 467 --~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 467 --HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp --SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 6999999999999999999999999999999999999999999999865444 4556689999999999999999986
Q ss_pred --CeEEEecChHHHHH
Q 000971 401 --GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 --G~iv~~G~~~~~~~ 414 (1206)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999988765
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=3.4e-29 Score=315.63 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=134.5
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHH---------------------hhhcCCCCCC--ee---EEEEEEcCccC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLSGRKTGG--YI---TGNITISGYPK 907 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl---------------------~~L~g~~~~~--~~---~G~i~i~g~~~ 907 (1206)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999997 5555543321 12 35677777654
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHH------HHHHHHHH
Q 000971 908 KQETFARISGYCEQNDI-------------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM------FIEEVMEL 962 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~-------------------~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~------~v~~~l~~ 962 (1206)
... .++.+||++|... .++.+||+||+.+...+..... ..+.... ...++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455554332 2356899999987433221110 0000000 11235888
Q ss_pred cCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000971 963 VELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039 (1206)
Q Consensus 963 l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1039 (1206)
+||.+. .++.+ ..|||||||||+|||||+.+|+ ||||||||+|||+.+...+++.|++++++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 56664 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHHhcCeEEEEe-----cCcEEEEEcCCC
Q 000971 1040 PGIDIFDAFDELFLMK-----RGGQEIYVGPLG 1067 (1206)
Q Consensus 1040 p~~~i~~~~d~v~ll~-----~gg~~~~~g~~~ 1067 (1206)
++ ....+|++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 75 456799999993 358999999863
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.95 E-value=2.8e-29 Score=307.63 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=116.1
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhh
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW 940 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~ 940 (1206)
++.+.+|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 569999999999999999999999999985331 121 12455666531 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 000971 941 LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1015 (1206)
Q Consensus 941 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~-----~ 1015 (1206)
+.. .+ +++ +...|+..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 12 122 2345666555544 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHHhcCeEEEEecC
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQPG---------IDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~p~---------~~i~~~~d~v~ll~~g 1057 (1206)
+..+.++++.+++.|.|||+++|++. ..+...+|++++|..|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999981 2456789999999864
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=1.2e-23 Score=267.49 Aligned_cols=109 Identities=26% Similarity=0.300 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 000971 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374 (1206)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~---~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~ 374 (1206)
.+..+|+.+||... .+| +....|||||||||.||++|+.+| ++|+|||||+|||+.+...+++.|+++.. .+
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35578899999742 222 345589999999999999999765 79999999999999999999999999864 34
Q ss_pred CeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHH
Q 000971 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1206)
Q Consensus 375 ~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~ 413 (1206)
. +|+.+.|+...+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~-TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 N-TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp C-EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred C-EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 4 555688888765 559999999 899999999999885
No 109
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=3.3e-24 Score=255.53 Aligned_cols=203 Identities=18% Similarity=0.144 Sum_probs=140.7
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC------------------------------------CeeEE
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG------------------------------------GYITG 898 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~------------------------------------~~~~G 898 (1206)
.+++++|+.+.+| +++|+|||||||||||++|.+...+ ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 9999999999999999999543210 01157
Q ss_pred EEEEcCccCCccc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 000971 899 NITISGYPKKQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLR-----------------------LPPEVD--- 948 (1206)
Q Consensus 899 ~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr-----------------------~~~~~~--- 948 (1206)
.+.+||.+..... ....+++++|++.+... +..+...|--... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998875422 22347999998766432 4444433321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---ccCC---
Q 000971 949 -------------------------------SETRKMFIEEVMELVELKPLI----------------QS---LVGL--- 975 (1206)
Q Consensus 949 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~~g~--- 975 (1206)
.+.....+.+.++.+++.... +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455566666664310 00 1111
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC
Q 000971 976 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1206)
Q Consensus 976 ---~~~~~-LSgGqrqrl~ia~aL~~~P--~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d 1049 (1206)
..++. ||||||||++||++|+.+| +||||||||+|||+.+...|.+.|++++ +|+|||+|||+|. +...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 00112 6999999999999999999 9999999999999999999999999997 5999999999974 568899
Q ss_pred eEEEE----ecCcEEEEE
Q 000971 1050 ELFLM----KRGGQEIYV 1063 (1206)
Q Consensus 1050 ~v~ll----~~gg~~~~~ 1063 (1206)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 64 565543
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=4.1e-24 Score=268.98 Aligned_cols=107 Identities=28% Similarity=0.301 Sum_probs=90.5
Q ss_pred HHHHHHHcCCcc-cccccccCcccccCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 000971 299 TDYYLKVLGLEV-CADTMVGDEMIRGISGGERKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374 (1206)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~---~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~ 374 (1206)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|++++. .
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-N- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356789999986 44444 4479999999999999999764 99999999999999999999999999864 3
Q ss_pred CeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHH
Q 000971 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1206)
Q Consensus 375 ~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~ 413 (1206)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45566688888775 689999999 789999999999875
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-26 Score=277.26 Aligned_cols=196 Identities=14% Similarity=0.071 Sum_probs=149.3
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTVY 932 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~~Tv~ 932 (1206)
.++|+.+++|++++|+||||||||||+++|+|... +..| + |.+||.+ ++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~~------~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLDP------QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECCT------TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCCc------cCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999865 3468 8 9999832 456899999874 45567999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1006 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~a--L~~~P~i----L~LDE 1006 (1206)
||+ |+....... .. ++.+.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 00 123556778888887665 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHHhcCe-----EEEEecCcEEEEEcCCCcc----hh
Q 000971 1007 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG--I---DIFDAFDE-----LFLMKRGGQEIYVGPLGRH----SC 1071 (1206)
Q Consensus 1007 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~--~---~i~~~~d~-----v~ll~~gg~~~~~g~~~~~----~~ 1071 (1206)
||++||+. ...+.+.+++ .|.|+|+++|+++ . .+..++|+ +++|.+.|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 5555555554 3789999999987 3 34578999 99998446677 7775321 12
Q ss_pred HHHHHHHh
Q 000971 1072 QLISYFEA 1079 (1206)
Q Consensus 1072 ~~~~yf~~ 1079 (1206)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 34567764
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=9.8e-24 Score=266.62 Aligned_cols=108 Identities=27% Similarity=0.270 Sum_probs=91.0
Q ss_pred HHHHHHHcCCcc-cccccccCcccccCChhhhhHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 000971 299 TDYYLKVLGLEV-CADTMVGDEMIRGISGGERKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374 (1206)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~---~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~ 374 (1206)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+ |++|+|||||+|||..+...+++.|++++. .
T Consensus 843 ~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-K- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356889999976 34433 457999999999999999976 499999999999999999999999999864 3
Q ss_pred CeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHHH
Q 000971 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 375 ~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~~ 414 (1206)
+.+|+.++|+..++ ..||+|++| ++|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 45566688888775 689999999 7899999999998753
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=9.6e-24 Score=266.17 Aligned_cols=108 Identities=22% Similarity=0.267 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCccc-ccccccCcccccCChhhhhHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 000971 298 ITDYYLKVLGLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLKQHVHIN 373 (1206)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~---~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~ 373 (1206)
.+..+|+.+||... .+. .+..|||||||||.||++|+.+ |+||+|||||+|||..+...+.+.|++++. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999863 333 3457999999999999999996 799999999999999999999999999864 3
Q ss_pred CCeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHH
Q 000971 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1206)
Q Consensus 374 ~~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~ 413 (1206)
+.+|+.++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45566688888888 889999999 799999999999874
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.2e-26 Score=270.89 Aligned_cols=185 Identities=10% Similarity=0.043 Sum_probs=142.4
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCeeCCCCCccceEEEecCCCC---CCCCCCH
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG-R-VTYNGHDMGEFVPERTAAYISQHDN---HIGEMTV 243 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G-~-I~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1206)
.++|+.+++|++++|+||||||||||+|+|+|.+.++ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999876 89 8 999982 3567899999873 4566899
Q ss_pred HHHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 244 RETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+||+ |+.... +... .+ .+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~~~----------~~---------------------------~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL----------LH---------------------------NKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSCCS----------SC---------------------------CBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCcch----------HH---------------------------HHHHHHHHhCCCcccc-------hh
Confidence 9998 754321 1000 00 0122456778876554 34
Q ss_pred cCChhhhhHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch-----hHHh
Q 000971 323 GISGGERKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP-----ETYD 390 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~--l~~~~~v----lllDE-ptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~-----~~~~ 390 (1206)
.|||||||||++|++ |+.+|++ ++||| ||++||.. ...+.+.+++ .+.++|+++|++.+ ++.+
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 799999999999999 9999999 99999 99999999 4444445443 35566665555431 5668
Q ss_pred hcCe-----EEEEc-CCeEEEecChHHHH
Q 000971 391 LFDD-----IILLS-DGQIVYQGPRELVL 413 (1206)
Q Consensus 391 ~fD~-----vilL~-~G~iv~~G~~~~~~ 413 (1206)
++|+ |++|+ +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987663
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=1.1e-22 Score=242.26 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=148.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----------------------------------LKVS 209 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~-----------------------------------~~~~ 209 (1206)
..+|+++++.+.+| +++|+|||||||||||++|.+.+... ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999997776421 0126
Q ss_pred eEEEECCeeCCCCCcc----ceEEEecCCCCCCCCCCHHHHHHHHhhhcCC-----CchhhHhHHHHHHhhhcCCCCCC-
Q 000971 210 GRVTYNGHDMGEFVPE----RTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GSRYELLTELARRENEAGIKPDP- 279 (1206)
Q Consensus 210 G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~-----~~~~~~~~~~~~~~~~~~i~p~~- 279 (1206)
|++.+||.+++..... ..+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 8899999987642221 24899999876554 3666655553221100 00011111110000000 00000
Q ss_pred ----------ChHHHHHHHh-----------hhhhhHHHHHHHHHHHcCCccccc----------c---------cccC-
Q 000971 280 ----------DIDVYMKAIA-----------TEGQEANVITDYYLKVLGLEVCAD----------T---------MVGD- 318 (1206)
Q Consensus 280 ----------d~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~d----------t---------~vg~- 318 (1206)
.++...+... .........+...++.++++...- + .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0010000000 111222334566677777754110 0 1111
Q ss_pred -----ccccc-CChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHh
Q 000971 319 -----EMIRG-ISGGERKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390 (1206)
Q Consensus 319 -----~~~~~-LSGGqkkRvsia~~l~~~~--~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1206)
..++. +||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++. .+.++| .++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi-~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVL-VVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEE-EECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEE-EEeCcH-HHHh
Confidence 12222 6999999999999999999 9999999999999999999999999875 344554 466765 5678
Q ss_pred hcCeEEEE----cCCeEEEec
Q 000971 391 LFDDIILL----SDGQIVYQG 407 (1206)
Q Consensus 391 ~fD~vilL----~~G~iv~~G 407 (1206)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=5.2e-22 Score=231.58 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 978 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~------~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|++. ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999975 47789999
Q ss_pred EEEecCcEEEE
Q 000971 1052 FLMKRGGQEIY 1062 (1206)
Q Consensus 1052 ~ll~~gg~~~~ 1062 (1206)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99986 67653
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=5.2e-25 Score=236.23 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=97.7
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
.+.+|+|| ++|+++||+||||||||||+++|+|. .+ .+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 34689985 89999999999999999999999997 52 2444421100001112356789999975 4
Q ss_pred HHH-HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000971 933 ESL-LYSA----WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1206)
Q Consensus 933 e~l-~~~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP 1007 (1206)
||+ .+.. .+... .. .+.++++++. + | |||||++|||||+.+|+|||||||
T Consensus 77 enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 444 2211 11100 01 1235555553 2 2 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
|+| ++..+++.|+++ ++|+||| ++|+++
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 888899999988 6699999 999975
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=4.2e-23 Score=215.09 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=101.7
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCC-CCCHHHHHHH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTVYESLLY 937 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~Tv~e~l~~ 937 (1206)
||||++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 11266777542110 001112111
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1014 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~--- 1014 (1206)
. ..+.....+.....+.. ...|+|||||++||++|+.+|++|+|||||++||+.
T Consensus 64 ----------------~-~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------Y-IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------H-HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------H-HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1 11222234555444433 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1015 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1015 -------------~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
....+++.|+++.++|.|||+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999888777999999999975
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=9.1e-22 Score=226.17 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE--
Q 000971 978 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL-- 1051 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~----~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v-- 1051 (1206)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|+|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 6889999999999999999999999999984 5899999999964 57889987
Q ss_pred EEEecCcEEEEEcCCC
Q 000971 1052 FLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~~ 1067 (1206)
++|.+|...+....+.
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888777777766653
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.82 E-value=2.3e-20 Score=217.71 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=72.1
Q ss_pred cccccCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 319 EMIRGISGGERKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~------~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
..+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.. .+. +|+.++|.... ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~-tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNK-VIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSS-EEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC-EEEEEecchHH-HHhC
Confidence 456689999999999999999 79999999999999999999999999998754 344 45557777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 000971 393 DDIILLSDGQIVY 405 (1206)
Q Consensus 393 D~vilL~~G~iv~ 405 (1206)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 121
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=4.9e-23 Score=241.55 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=138.9
Q ss_pred eEEeecceeeeeCCe--------------------EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCccccc
Q 000971 854 LVLLNGLSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA 913 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~--------------------~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 913 (1206)
+.+|++||+.+++|+ ++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 358999999999999 9999999999999999999997664 3688888886542
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH--HHHHHHH
Q 000971 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE--QRKRLTI 991 (1206)
Q Consensus 914 ~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG--qrqrl~i 991 (1206)
+ .+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889998875542 1 12368899999988753332 28999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCch-HHHHhcCeE
Q 000971 992 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPGI-DIFDAFDEL 1051 (1206)
Q Consensus 992 a~aL~~----------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~~H~p~~-~i~~~~d~v 1051 (1206)
|++|+. +|++|+|||||+|||+.++..+++.|+++. +.| .+|++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999874 333 678899998762 377778888
Q ss_pred E-EEec
Q 000971 1052 F-LMKR 1056 (1206)
Q Consensus 1052 ~-ll~~ 1056 (1206)
. .|..
T Consensus 248 ~~~Lpe 253 (413)
T 1tq4_A 248 ISDLPI 253 (413)
T ss_dssp HHHSCG
T ss_pred HHhCcc
Confidence 6 4443
No 122
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=1e-22 Score=218.44 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=95.9
Q ss_pred cccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC
Q 000971 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1206)
...+.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3446789986 89999999999999999999999999 876 777732111111112246799999975
Q ss_pred CHHHHH-HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 242 TVRETL-AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 242 TV~Etl-~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+ .|.... +. .+. . . . + ...++.+++. ||
T Consensus 76 --~enl~~~~~~~------~~---~~~---~---~-~--~---------------~~~~~~~l~~-gl------------ 107 (208)
T 3b85_A 76 --NEKIDPYLRPL------HD---ALR---D---M-V--E---------------PEVIPKLMEA-GI------------ 107 (208)
T ss_dssp ------CTTTHHH------HH---HHT---T---T-S--C---------------TTHHHHHHHT-TS------------
T ss_pred --HHHHHHHHHHH------HH---HHH---H---h-c--c---------------HHHHHHHHHh-CC------------
Confidence 6666 342110 00 000 0 0 0 0 0112333332 22
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1206)
||||||+||++|+.+|++|+|||||+| +...+.+.|+++ . . +++|+ ++|+..++
T Consensus 108 ------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~ 161 (208)
T 3b85_A 108 ------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV 161 (208)
T ss_dssp ------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----
T ss_pred ------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH
Confidence 999999999999999999999999999 788888888876 2 3 45566 77776544
No 123
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=6.6e-24 Score=228.32 Aligned_cols=183 Identities=12% Similarity=0.045 Sum_probs=121.7
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6899999999999999999999999999654 223333333332211 12456899999987777788887
Q ss_pred HHHHhhhhcC---CCCCCHHHHHHHHHHH------HHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000971 934 SLLYSAWLRL---PPEVDSETRKMFIEEV------MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1206)
Q Consensus 934 ~l~~~a~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~L 1004 (1206)
++.+...... ....+.++.++.+++. ++.+++.+..+..+ ..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 7642211110 0012334445556655 55666665555553 3566 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 1005 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1005 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...+|++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 9999998 78899999999999874 4899999999987 6888999999996544
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=5.7e-21 Score=200.00 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=100.4
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
.++|+||||||||||+++|+|... |.++|.+.... ..++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 689999999999999999999653 22333221111 2345689999975 222332 1 11110
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1018 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~a-----L~~~P~iL~LDE--PTsgLD~~~~~~ 1018 (1206)
.. .+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --TS----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --CC----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --Cc----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 0223333 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 1019 VMRTVRNTVDTGRTVVCTIH---QPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 1019 i~~~l~~~~~~g~tvi~~~H---~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9888865 4778999986 433 45567776 4566665443
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=6.2e-22 Score=232.26 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=132.1
Q ss_pred cceEeeceeeeEeCCe--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC
Q 000971 164 HLTILKDVSGIIKPGR--------------------MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~--------------------~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~ 223 (1206)
...+|++||+.+++|+ +++|+||||||||||+|+|+|.++++ +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999999987 899999987653
Q ss_pred ccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHH
Q 000971 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (1206)
Q Consensus 224 ~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l 303 (1206)
+ .+|++|++ .++.+|+.||+.++.. + ..++.++
T Consensus 109 --~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L 141 (413)
T 1tq4_A 109 --M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYL 141 (413)
T ss_dssp --C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHH
T ss_pred --e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHH
Confidence 1 27899985 6788999998755310 0 0135567
Q ss_pred HHcCCcccccccccCcccccCChh--hhhHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 000971 304 KVLGLEVCADTMVGDEMIRGISGG--ERKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 304 ~~lgL~~~~dt~vg~~~~~~LSGG--qkkRvsia~~l~~----------~~~vlllDEptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
+.++|.+... . . .|||| ||||+.||++|.. +|++++|||||+|||+.+..++.+.|+++..
T Consensus 142 ~~~~L~~~~~-~-----~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYDF-F-----I-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCSE-E-----E-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccCC-e-----E-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 8888875422 1 2 29999 9999999999999 9999999999999999999999999988752
Q ss_pred ----hc---CCeEEEEEecCchh--HHhhcCeEE
Q 000971 372 ----IN---SGTAVISLLQPAPE--TYDLFDDII 396 (1206)
Q Consensus 372 ----~~---~~t~vi~i~q~~~~--~~~~fD~vi 396 (1206)
.. ..++|+...|...+ +.+++|+|.
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23445444554444 666666664
No 126
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.80 E-value=1.5e-22 Score=228.23 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=117.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+++|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999997 5777 357888876665 5888
Q ss_pred H-HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 245 E-TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 245 E-tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
| |+.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~----~--~------------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA----T--H------------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE----C--H------------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc----c--H------------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77653110 0 0 011223332 444444 3 37
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||| |||++.+|+||+ |++||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999877752 1 333 3345689999 9999999
Q ss_pred EEecChHHHHHHHHhc
Q 000971 404 VYQGPRELVLEFFESM 419 (1206)
Q Consensus 404 v~~G~~~~~~~~f~~~ 419 (1206)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999986666553
No 127
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=1.3e-19 Score=208.23 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=69.2
Q ss_pred ccccCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 320 MIRGISGGERKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~----~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.+..|||||||||+||++|+ .+|++++|||||++||+.....+.+.|+++. .+.+ |+.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQ-FIVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSE-EEEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCe-EEEEECC-HHHHhhCceE
Confidence 34579999999999999997 6899999999999999999999999999863 3444 4556666 4688899986
Q ss_pred --EEEcCCeE-EEecChHH
Q 000971 396 --ILLSDGQI-VYQGPREL 411 (1206)
Q Consensus 396 --ilL~~G~i-v~~G~~~~ 411 (1206)
++|.+|.. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888854 44444444
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.77 E-value=5.4e-20 Score=191.58 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=54.1
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~----------------t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
..||||||||+||++++.+|++++|||||++||+. ....+.+.|+++... +.| ++.++|..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~t-vi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFR-YVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCS-EEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCc-EEEEeCCHH
Confidence 46999999999999999999999999999999999 558888888777543 444 555677777
Q ss_pred hHHh
Q 000971 387 ETYD 390 (1206)
Q Consensus 387 ~~~~ 390 (1206)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.77 E-value=2.9e-20 Score=194.65 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~ 259 (1206)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 579999999999999999999975 22333221 1111001245789999974 222222 10 00
Q ss_pred hhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHH--
Q 000971 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM-- 337 (1206)
Q Consensus 260 ~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~-- 337 (1206)
+.. .+..++ ..+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~--~~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFT--SKKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCC--CSSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCC--cccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 000 001122 2344799999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cCchhHHhhcCeEEEEcCCeEEE
Q 000971 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 338 ---l~~~~~vlllDE--ptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~--q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
++.+|++++||| ||++||+.....+.+.|++ .+.++|++.| |+.+.+..++|+ .+|++++
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999888888764 3455777775 788888888887 5566655
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=9.9e-21 Score=211.36 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=97.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~ 948 (1206)
.+||+||||||||||+|+|+|...+ .+|+|.++|.+......++.+||++|++.+++.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HH
Confidence 4899999999999999999997653 4799999998775545567899999999999999999999887543321 11
Q ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 949 SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 949 ~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
. +.+.+.++ ....+.+. ..||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12333333 33444443 3699999999999999886 999999999999987 445555655
Q ss_pred CCCEEEEEecCC
Q 000971 1029 TGRTVVCTIHQP 1040 (1206)
Q Consensus 1029 ~g~tvi~~~H~p 1040 (1206)
. .+||+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999974
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=4e-20 Score=209.58 Aligned_cols=154 Identities=15% Similarity=0.128 Sum_probs=119.4
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 926 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 926 (1206)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997542 258999999875421 12 235899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 000971 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1004 (1206)
Q Consensus 927 ~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~L 1004 (1206)
|.+|++|++.+... + . .+ ..+++.+|+.+..+.++ ..|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~--~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-T--CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-C--Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 1 00 13566777777666664 3588 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000971 1005 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1039 (1206)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1039 (1206)
| ||+|||+... ++++. ..|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999998754 24444 358999999994
No 132
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.75 E-value=1.9e-19 Score=206.92 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=104.4
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997764 379999998642110 0122233321
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000971 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1206)
Q Consensus 935 l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~ 1014 (1206)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1015 ~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
.+++.|+.+...+.|+|+|+|.++ ....+||+++|.+|.
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543458999999987 577899999998753
No 133
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.74 E-value=1.1e-21 Score=221.24 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=123.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
|.++||++.++ ..+|++||+.|++|+++||+||||||||||+++|+|.. +|+|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 56777776553 24899999999999999999999999999999999976 3566
Q ss_pred cccccceEEEeecCCCCCCCCCHHH-HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYE-SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e-~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
++|++|++.++. .|++| |+.|.. +.+. .+++.++.+ |.+..+ +..|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 245677766554 46776 765531 1111 345566654 433333 2479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
| ||||+.+|+||| ||+||+.+...|+. .+|+++ .+..+|++ +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999888752 189876 36789999 9985 799988875
Q ss_pred cchhHHHHHHHhC
Q 000971 1068 RHSCQLISYFEAI 1080 (1206)
Q Consensus 1068 ~~~~~~~~yf~~~ 1080 (1206)
.++-.+|..+
T Consensus 262 ---~el~~~y~~l 271 (305)
T 2v9p_A 262 ---ADWKSFFVRL 271 (305)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---HHHHHHHHHH
Confidence 3455566654
No 134
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=3.8e-22 Score=216.30 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=109.4
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCCCCCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~~T 930 (1206)
.-|+||||++++|+++||+||||||||||+++|+|.. + |+|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999965 2 66777 6543211 12456789999866554333
Q ss_pred H-HHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEE
Q 000971 931 V-YESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1003 (1206)
Q Consensus 931 v-~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~i-----a~aL~~~P~iL~ 1003 (1206)
. .+++.+ ..+..+ ...+ +..++++++...+. ..+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111111 001110 0111 12366777654432 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCchHHHHhcCeEE
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
|||||+++|..+...|.+.|.++.. .+.+.|++.|++. +.+..+|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999988877643 2345555555543 3444444443
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=1.1e-17 Score=193.19 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred Ccccc-cCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 318 DEMIR-GISGGERKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 318 ~~~~~-~LSGGqkkRvsia~~l~---------~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
+..++ .+||||||||+||++|+ ++|+||+|||||++||+.....+++.|+++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 79999999999999999 899999999999999999999999999864 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChHHH
Q 000971 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~ 412 (1206)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 136
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=2e-19 Score=203.88 Aligned_cols=174 Identities=15% Similarity=0.157 Sum_probs=126.4
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------ccceEEEecCCCC-C
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------PERTAAYISQHDN-H 237 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~ 237 (1206)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999876 899999998765421 1235899999988 8
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+|.+||+|++.++... +. | ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHHH-
Confidence 8999999999885321 00 0 01234566666555444
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------ch
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP---------AP 386 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~--vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~---------~~ 386 (1206)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.++|+ ++|- ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 3589 999999999999999 99999 99999987542 3333333455555 5552 12
Q ss_pred hHHhhcCeEEEEcCCeE
Q 000971 387 ETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 387 ~~~~~fD~vilL~~G~i 403 (1206)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33345667888888854
No 137
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.73 E-value=2e-19 Score=200.80 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~ 259 (1206)
.++|+||||||||||+|+|+|...++ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999999887 89999999887554445789999999999999999999998754321100
Q ss_pred hhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHh
Q 000971 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339 (1206)
Q Consensus 260 ~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~ 339 (1206)
.+.+ .+. +. ....+..+ ..|||||||||++||+++
T Consensus 80 ~~~i-----------------------------------~~~-~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEPI-----------------------------------EKY-IN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHHH-----------------------------------HHH-HH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HHHH-----------------------------------HHH-HH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 0000 000 00 11112222 369999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 000971 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382 (1206)
Q Consensus 340 ~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~ 382 (1206)
. ++|+|||+.|||+.. .+.++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEe
Confidence 5 999999999999976 344444432 2 55555443
No 138
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=3.5e-17 Score=189.24 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 978 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 978 ~~~LSgGqrq------rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||| |+++|++|+.+|++|||||||+|||+.....+.+.|+++.+.|.|||+++|++. +...+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677888888999999999999999999999999999998777899999999964 67899999
Q ss_pred EEEec
Q 000971 1052 FLMKR 1056 (1206)
Q Consensus 1052 ~ll~~ 1056 (1206)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99864
No 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=2.5e-19 Score=206.67 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 927 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 927 (1206)
..+|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468899999999999999999999999999997542 258999999876421 12 345899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1005 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LD 1005 (1206)
..|++|++.+... + . .+ ..+++.+|+.+..+.++ ..|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-T--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-C--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 1 10 13456677777666654 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1039 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1039 (1206)
||+|||+.... +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 3444 348999999994
No 140
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.70 E-value=3.3e-18 Score=194.16 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=116.0
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
.+|+++++.+++|++++|+||||||||||++.|+|...+. .| .|.+.+.........+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4799999999999999999999999999999999954321 24 45443333222222222222332221 22334
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1009 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq-rqrl~ia~aL~~~P~iL~LDEPTs--- 1009 (1206)
++.... + +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1122233344444322221 1111 13588898 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-h--------------------HHHHhcCeEEEEecC
Q 000971 1010 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPG-I--------------------DIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1010 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~p~-~--------------------~i~~~~d~v~ll~~g 1057 (1206)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|+|++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999765 999999999962 1 467789999999875
No 141
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.70 E-value=8.5e-21 Score=205.66 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=104.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
..-|+|||+.|++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 766543322 3467899998655544
Q ss_pred CCH-HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 241 MTV-RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV-~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
++. .+++.+. .+.+ ..|... ...++.+++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~~--------------------------------~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGTL--------------------------------KSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEEE--------------------------------HHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hccc--ccCCCc--------------------------------HHHHHHHHhCCCc-----EEEE--
Confidence 321 1111100 0000 000000 0012233332221 1221
Q ss_pred ccccCChhhhhHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 320 MIRGISGGERKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsi-----a~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|...... .+ +.| ...||.
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~ 187 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNL 187 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSE
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCE
Confidence 3699999999999 88999999999999999999999999998888765432 12 112 245777
Q ss_pred EEEEcC
Q 000971 395 IILLSD 400 (1206)
Q Consensus 395 vilL~~ 400 (1206)
|+++++
T Consensus 188 iiv~~~ 193 (218)
T 1z6g_A 188 SIINDD 193 (218)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 776654
No 142
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.70 E-value=1.4e-19 Score=214.98 Aligned_cols=174 Identities=16% Similarity=0.094 Sum_probs=135.7
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 922 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~q~ 922 (1206)
..+|+++ +.+.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4599999 99999999999999999999999999997664 3799999997 3321 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 923 -DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 923 -~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+..++.+|+.+++.+.+....... -......+. ...||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------------~~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------------QHVLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------------CEEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------------CCHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 455677899999987653221000 001111222 24699999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1002 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1002 L~LDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+|||+.+...+.+.+.++.+ + |. ||++++|+++ ...+|++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999998865 3 64 9999999987 456899999985 799988763
No 143
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=1.8e-18 Score=199.53 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=126.8
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------ccceEEEecCCCC-CC
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------PERTAAYISQHDN-HI 238 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1206)
+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999876 899999998764321 1235899999988 88
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
|.+||+|++.++... +. | ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhHH--
Confidence 999999999986421 00 0 01234456665554443
Q ss_pred cccccCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------chh
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP---------APE 387 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~--vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~---------~~~ 387 (1206)
..|| |||+.||++++.+|+ +|+|| ||+|||+.... +.+....+.++|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 3589 999999999999999 99999 99999987642 2333223455555 5552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 000971 388 TYDLFDDIILLSDGQI 403 (1206)
Q Consensus 388 ~~~~fD~vilL~~G~i 403 (1206)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3345667777777753
No 144
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.70 E-value=3.2e-19 Score=211.92 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=138.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe---eCCCC--------CccceEEEec
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---DMGEF--------VPERTAAYIS 232 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~---~~~~~--------~~~~~~~yv~ 232 (1206)
...+|+++ +.|.+|+.++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35699999 999999999999999999999999999999987 999999998 44332 1246799999
Q ss_pred CC-CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000971 233 QH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1206)
Q Consensus 233 Q~-d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1206)
|. +..++.+||.+|+.+.++.... .. .+. ...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~v---------------------------~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QHV---------------------------LLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CEE---------------------------EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CCH---------------------------HHH
Confidence 95 5667888999999886542110 00 000 000
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecC
Q 000971 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI--NSGT-----AVISLLQP 384 (1206)
Q Consensus 312 ~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~--~~~t-----~vi~i~q~ 384 (1206)
.| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .++. +|+...|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 01 134699999 999999 788877 9999999999999999886542 2242 56666677
Q ss_pred chhHHhhcCeEEEEcCCeEEEecChHHH
Q 000971 385 APETYDLFDDIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 385 ~~~~~~~fD~vilL~~G~iv~~G~~~~~ 412 (1206)
.. ...+|++++|.+|+++..|++.++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 66 678999999999999999987765
No 145
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.69 E-value=3.6e-20 Score=199.07 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=111.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+| ..|++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23333333322211 1235689999998788888888
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH------HHHcCCcccccccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLEVCADTMVGD 318 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 318 (1206)
|++.+.....+....|....+ +....++.. ++.+|+.+.++..+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~----------------------------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ----------------------------PVRAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH----------------------------HHHHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCCcHH----------------------------HHHHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 776432111100000000000 000111111 23334433333332
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgL----Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
+.|| +|+.+|++++|||||+|| |+.....+.+.++++.+..+. +++.++|+.+++..++|+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF-DKVVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS-SEEEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC-cEEEECCCHHHHHHHHHH
Confidence 2466 889999999999999998 788999999999888654444 455578999999999999
Q ss_pred EEEEc
Q 000971 395 IILLS 399 (1206)
Q Consensus 395 vilL~ 399 (1206)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 146
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.68 E-value=7.2e-17 Score=186.48 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 980 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~---------~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
.||+|||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 799999994 4 2 7899
Q ss_pred EEEEecCcEEEEEcCCC
Q 000971 1051 LFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1051 v~ll~~gg~~~~~g~~~ 1067 (1206)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 7999888864
No 147
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.65 E-value=4.6e-18 Score=193.54 Aligned_cols=128 Identities=10% Similarity=-0.009 Sum_probs=95.6
Q ss_pred ceee-eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHH
Q 000971 170 DVSG-IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 170 ~vs~-~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|++. .+++|++++|+||||||||||+++|+|.+++. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999998874 332 358999999999988 9999986
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+... .+.... .| ...+..+|+.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 01 112344566666 43333433 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCH
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDS 356 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs 356 (1206)
+|||++|++++.+|+|+++|||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 148
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.65 E-value=3.7e-18 Score=194.32 Aligned_cols=157 Identities=10% Similarity=-0.027 Sum_probs=110.5
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
+++|+++||+||||||||||+++|+|...+. +|. +.++||+|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 8999999999999999999999999965431 121 347999999998887 999998642211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l 1023 (1206)
+.+.....+.+.++|+.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1122222345778888887 54444443 4699999999999999999999999999999998521 112
Q ss_pred HHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1024 ~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+++. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2222 3 346666665433334556665554
No 149
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.65 E-value=1.9e-17 Score=190.23 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=99.4
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
+++++|+.+++|++++|+|||||||||||++|+|.++++ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 789999999999999999999999999999999999987 9999999853 110 000
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
.+ .. . ..+ .+ |
T Consensus 215 ------~~---~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 215 ------HK---NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp ------CS---SE----------------------------------------------E-------EEE-----CB--T
T ss_pred ------ch---hE----------------------------------------------E-------EEE-----eC--C
Confidence 00 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~-t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
||+||++||++|..+|+++++||||+. ++.+.|+.+. .++ ++++++|.+ . +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~-~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAG-S-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECS-S-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEccc-H-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666543 344 455555444 3 7888999999988853
No 150
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=4.1e-16 Score=157.52 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 978 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia------~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||||++|| ++|+.+|++|||||||+|||+.+...+.+.|+++.++|+|||+++|++ ++...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 000971 1052 FLMK 1055 (1206)
Q Consensus 1052 ~ll~ 1055 (1206)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 151
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.64 E-value=7.2e-19 Score=215.32 Aligned_cols=167 Identities=19% Similarity=0.148 Sum_probs=114.5
Q ss_pred eEEeeccee-eeeCCeEEEEEccCCCcHHHHHhh--hcCCCCCCeeEEEEEEcCccCCcc--cccceEEEeecCCCCCCC
Q 000971 854 LVLLNGLSG-AFRPGVLTALMGVSGAGKTTLMDV--LSGRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPF 928 (1206)
Q Consensus 854 ~~vL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~--L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~ 928 (1206)
..+|++||+ .+++|++++|+||||||||||+++ ++|...++ +|.|+++|.+.... ..++.+||++|+....++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 458999999 999999999999999999999999 67865533 68999999874321 223457898887432211
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
+.+ +... . .. ...++++.++|.+..+..+ ..||+ .+|++|+|||||
T Consensus 103 ------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~-------------g~~~~lilDe~t 148 (525)
T 1tf7_A 103 ------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERIN-----YAIQK-------------YRARRVSIDSVT 148 (525)
T ss_dssp ------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHH-----HHHHH-------------HTCSEEEEECST
T ss_pred ------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHH-----HHHHH-------------cCCCEEEECCHH
Confidence 111 0000 0 00 0111222222222222221 12444 468899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHHhcCeEEEEec
Q 000971 1009 S-----GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID--------IFDAFDELFLMKR 1056 (1206)
Q Consensus 1009 s-----gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~--------i~~~~d~v~ll~~ 1056 (1206)
+ +||+..+..++++++.+++.|+|||+++|+++.. ....+|+|++|++
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8 4699999999999999988899999999998731 2345999999987
No 152
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.63 E-value=3.8e-17 Score=211.62 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=113.2
Q ss_pred eEEeecceeeeeC-------CeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC
Q 000971 854 LVLLNGLSGAFRP-------GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 926 (1206)
Q Consensus 854 ~~vL~~vs~~i~~-------G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~ 926 (1206)
..+++||++.+++ |++++|+|||||||||||++| |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4599999999988 999999999999999999999 85431 1222238998753
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000971 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1206)
Q Consensus 927 ~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDE 1006 (1206)
.+||.|++.. + +|+.+.... +.+.+|+|+++ +++|++++.+|++|||||
T Consensus 828 -~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 4566555421 1 111111111 12457777765 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 1007 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 1007 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||+|+|+.. ...++.+|+.+.++ |++||++||+++ .+...+|++.++. |++.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEE
Confidence 999999987 46678999999876 999999999976 3556789998875 6776
No 153
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.63 E-value=2.5e-15 Score=173.77 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=65.5
Q ss_pred cccccCChhhhh------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 319 EMIRGISGGERK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 319 ~~~~~LSGGqkk------Rvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
..+..||||||| |+++|++++.+|++|+|||||+|||+.....+++.|+++.. .+.+++ .++|+ +++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi-~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVI-LVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEE-EEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE-EEECh-HHHHHhC
Confidence 345689999999 67788888999999999999999999999999999998754 345544 46666 5688999
Q ss_pred CeEEEEc
Q 000971 393 DDIILLS 399 (1206)
Q Consensus 393 D~vilL~ 399 (1206)
|+|++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=2.4e-17 Score=181.71 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=104.8
Q ss_pred eecce-eeeeCCeEEEEEccCCCcHHHHHhhhc--CC-CCCCeeEEEEEEcCccCCcc--cccceEEEeecCCCCCCCCC
Q 000971 857 LNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLS--GR-KTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 857 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~~T 930 (1206)
|+++- +.|++|++++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+||++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 44443 589999999999999999999999999 54 332 35667776543221 11233566666543334444
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsg 1010 (1206)
+.++....... ... ..... ....+.++......+..-..+|++|+|||||++
T Consensus 96 ~~~~~~~~~~~------~~~----~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL------PSE----EKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc------ccc----cceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 43332211000 000 00000 012344555444444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHhCCCEEEEEecCCchHH---------HHhc-CeEEEEec
Q 000971 1011 LD-----ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI---------FDAF-DELFLMKR 1056 (1206)
Q Consensus 1011 LD-----~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i---------~~~~-d~v~ll~~ 1056 (1206)
|| ...+..+.++++.+++.|+|||+++|++. +. ...+ |++++|+.
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEee
Confidence 98 67777799999998878999999999987 34 4678 99999963
No 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=1.3e-17 Score=184.04 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=98.8
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3457999999999999999999999999999999999853 222222 1355689999985 6678999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
.|++.+......... +.....+.+.+.++.+ .+..+.. ...||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211111 1111122344455543 2333333 24699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000971 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p 1040 (1206)
|.. +.++ .+.||++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 763 2222 378999999973
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.62 E-value=8.1e-17 Score=178.80 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=96.9
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
+|+++| +++|++++|+||||||||||+++|+|...+. .+|+|.++|.++. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~---------~~~~~~~~~--------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE---------YVFKHKKSI--------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCC---------SCCCCSSSE---------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcce---------eecCCccee---------
Confidence 799999 9999999999999999999999999965421 1689999987642 223321100
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
+. . +.+++.. ..| |++||++|..+|++|+||||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0112211 122 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
...+ ++. +..|.+|++|+|+++ ....+|+++.|.+
T Consensus 113 ~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 333 357999999999976 5678999988864
No 157
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=8.3e-16 Score=196.64 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=105.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhc--------CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 925 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~ 925 (1206)
..+++||++.+.+|++++|+|||||||||||++++ |...+. .+. .++.+ +
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~---------------~~~~~---d-- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESA---------------EVSIV---D-- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEE---------------EEECC---S--
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--ccc---------------cchHH---H--
Confidence 46899999999999999999999999999999994 321110 110 01110 0
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEE
Q 000971 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIF 1003 (1206)
Q Consensus 926 ~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL--~~~P~iL~ 1003 (1206)
+++..+|+.+ .+ ..++|++++++..+|++| +.+|++||
T Consensus 707 --------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 707 --------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp --------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred --------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0011111111 11 135888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1004 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|||||+|||+.....+ +.+++.+.+ .|+|||++||++ ++...+|++..+.+ |++.+.++.
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 9999999999988777 677777876 499999999995 46788999998885 788776654
No 158
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.61 E-value=1.3e-16 Score=181.00 Aligned_cols=186 Identities=14% Similarity=0.064 Sum_probs=110.5
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCeeCCCCCccceEEEecCCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG-RVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1206)
...+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|.. .++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRV----RLR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTC----CGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chh
Confidence 356899999999999999999999999999999999998764 46 5654432211000000111111110 001
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+.+++..+ .+ ...+....++.+++..++. ..+ ...
T Consensus 94 ~~~~l~~~--------------~~------------------------~~~~~~~~~~~~l~~~~l~-i~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------II------------------------ENGKFDQWFDELFGNDTFH-LYD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------HH------------------------HHTHHHHHHHHHHSSSCEE-EEC------CCC
T ss_pred hccccccC--------------CC------------------------CHHHHHHHHHHHhccCCEE-EEC------CCC
Confidence 11111110 00 0011112233333322221 111 123
Q ss_pred cCChhh-hhHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCc--h------
Q 000971 323 GISGGE-RKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLKQHVHINSGTAVISLLQPA--P------ 386 (1206)
Q Consensus 323 ~LSGGq-kkRvsia~~l~~~~~vlllDEpts---g---LDs-~t~~~i~~~L~~~~~~~~~t~vi~i~q~~--~------ 386 (1206)
.+|.+| ++|+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67776 999999999999999999 5 455 66678899999988755555555 55653 3
Q ss_pred --------------hHHhhcCeEEEEcCCeE
Q 000971 387 --------------ETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 387 --------------~~~~~fD~vilL~~G~i 403 (1206)
.+...||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 159
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.60 E-value=1.7e-15 Score=185.16 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=66.4
Q ss_pred ccccC-ChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 320 MIRGI-SGGERKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 320 ~~~~L-SGGqkkRvsia~~l~~~~--~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
.+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|++++. +.+ |+.++|... +...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCHH-HHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 444 555677754 556799999
Q ss_pred EEcCC
Q 000971 397 LLSDG 401 (1206)
Q Consensus 397 lL~~G 401 (1206)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
No 160
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=9.8e-17 Score=174.48 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=97.1
Q ss_pred Eeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcCC--CCCC---eeEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 000971 856 LLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 856 vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g~--~~~~---~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 929 (1206)
.|+.+- +-+++|++++|+||||||||||+++|+|. ..++ ...|.+++++..... .+.++++.|...+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-
Confidence 344433 68999999999999999999999999983 3211 123567777653210 1112333333222221
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH-HHHHHHHHHHHHhh-------CCcE
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST-EQRKRLTIAVELVA-------NPSI 1001 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg-Gqrqrl~ia~aL~~-------~P~i 1001 (1206)
|+.||+.+. ...+. .+++.+..+.+++. +|++
T Consensus 89 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 128 (231)
T 4a74_A 89 EVLKHIYVA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKL 128 (231)
T ss_dssp HHHHTEEEE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred HHhhcEEEE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeE
Confidence 222322111 01233 33344566666665 8999
Q ss_pred EEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCch---HHHHhcCeEEEEecC
Q 000971 1002 IFMDEPTSGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPGI---DIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1002 L~LDEPTsgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~p~~---~i~~~~d~v~ll~~g 1057 (1206)
|+|||||+++|+. . ...+++.|+++++ .|+|||+++|.... .+...+|+++.|.+|
T Consensus 129 lilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 129 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred EEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9999999999983 2 2367777777764 49999999994431 266788999999874
No 161
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=1.1e-16 Score=176.63 Aligned_cols=140 Identities=15% Similarity=0.045 Sum_probs=86.5
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1206)
..+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999975 222233 1245789999985 778899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+.|++.+.......... + ..+.+ .+...|+. |.+..+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~~~---------------~~~~~L~~--l~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFDND---------------LMHRTLKN--IVEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBCHH---------------HHHHHHHH--HHTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCc-c----------------cccHH---------------HHHHHHHH--HHCCCCee-----cc
Confidence 99998775432111000 0 00000 01112222 22333333 34
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHH
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~ 357 (1206)
.+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 799999999987 5788899999999998888763
No 162
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.58 E-value=6.3e-17 Score=186.58 Aligned_cols=175 Identities=15% Similarity=0.205 Sum_probs=121.8
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc----------ccccceEEEeecCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----------ETFARISGYCEQND 923 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~q~~ 923 (1206)
..+|+++ +.|.+|+++||+||||||||||+++|+|...++ .|.|.+.|.+... ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4599999 999999999999999999999999999976644 6889888864211 12345677777754
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000971 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1003 (1206)
Q Consensus 924 ~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~ 1003 (1206)
. ...+.+.-.. ....+.+.....+ .+... .. ..+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 2222221000 0000111111111 01000 00 1135799999 899999 688887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+|||+.....+.++++++.+ .|. ||++++|+.+ ...+|++++|.+ |+++..|++
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999987 356899999985 799988764
No 163
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=8.7e-16 Score=195.84 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=98.4
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
...+++|||+.+++|++++|+|||||||||||+++++...... .|...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 3569999999999999999999999999999999975311000 01111100 0111211 1111111111
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD 1012 (1206)
++ ... +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DN----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HH----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11 111 134689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHHhcCeE
Q 000971 1013 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 1013 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+.....+. .+++.+.+ .|+|||++||++. +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99888887 77777765 5999999999965 45666654
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.56 E-value=2.8e-15 Score=191.86 Aligned_cols=89 Identities=12% Similarity=0.118 Sum_probs=68.9
Q ss_pred ccCChhhhhHHHHHHHH--hcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 322 RGISGGERKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l--~~~~~vlllDEptsgLDs~t~~~i~-~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+. ..++.+....+.+++ .++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl-~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM-FATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEE-EEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEE-EEcCc-HHHHHHhccccee
Confidence 46888888888888888 8999999999999999999998884 556665543344544 46666 5677899999999
Q ss_pred cCCeEEEecChHHH
Q 000971 399 SDGQIVYQGPRELV 412 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1206)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876543
No 165
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.54 E-value=1.7e-17 Score=178.51 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=112.5
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHhhhh
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTVYESLLYSAWL 941 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~a~l 941 (1206)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986431 368999988776 5689988875531
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 000971 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1010 (1206)
Q Consensus 942 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq----rqrl~ia~aL~~~P~iL~LDEPTsg------- 1010 (1206)
..+. ....+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111 11223467788888887766554 34688886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 000971 1011 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1040 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~p 1040 (1206)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988875 45699999999974
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.53 E-value=9.2e-16 Score=193.04 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=97.3
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+++|||+. |++++|+|||||||||||++|+|..... ..|.+. |. .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v----pa----~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSFV----PA----EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB----SS----SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCcee----eh----hccceeeHHH---hhccCCHHH
Confidence 4699999999 9999999999999999999999853100 112221 11 1234677765 344455554
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1008 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL--~~~P~iL~LDEP---T 1008 (1206)
++. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHHhc
Q 000971 1009 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1048 (1206)
Q Consensus 1009 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~ 1048 (1206)
++||..+. ..+++.|++ .|+|||++||+++ +...+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 99999875 578877765 4899999999954 44443
No 167
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.53 E-value=8.9e-16 Score=177.01 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=124.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC----------CccceEEEecC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----------VPERTAAYISQ 233 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~----------~~~~~~~yv~Q 233 (1206)
...+|+++ +.|.+|+.++|+|||||||||||++|+|..+++ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 35689999 999999999999999999999999999999987 89999988652111 01245777777
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000971 234 HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1206)
.+. +..+.+.-... .. ...++ ....| .+
T Consensus 134 ~~~-----~~~~r~~~~~~-------------~~-----------------------------~~ae~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT-------------AT-----------------------------TIAEY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH-------------HH-----------------------------HHHHH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH-------------HH-----------------------------HHHHH-HHhcc----cc
Confidence 542 22222211100 00 00000 00011 01
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecCchhH
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGT-----AVISLLQPAPET 388 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t-----~vi~i~q~~~~~ 388 (1206)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|+..+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 110002245699999 899999 577776 99999999999999998865312344 5666667766
Q ss_pred HhhcCeEEEEcCCeEEEecChHHH
Q 000971 389 YDLFDDIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 389 ~~~fD~vilL~~G~iv~~G~~~~~ 412 (1206)
..+||++++|.+|+++..|+..++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 567999999999999999987754
No 168
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.52 E-value=9.8e-17 Score=182.16 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=85.6
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC-CCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
++.++++++|.| +|+||||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 457999999998 99999999999999999986 33 2357 77777665332223457899998887788999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC-
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 1010 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsg- 1010 (1206)
.|+.-++..... .+..+..++.+. +..+.. .+++|||||||+.+||+++ +|++||||++
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 998876533210 010011122211 222333 2469999999999998885 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 000971 1011 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPG 1041 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~ 1041 (1206)
||+... +.++++... +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 555666543 788999999964
No 169
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=5.7e-16 Score=179.39 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=99.4
Q ss_pred Eeecc-eeeeeCCeEEEEEccCCCcHHHHHhhhcCCC--CC--CeeEEE-EEEcCccCCcccccceEEEeecCCCCCCCC
Q 000971 856 LLNGL-SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TG--GYITGN-ITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 856 vL~~v-s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 929 (1206)
.|+.+ .+.+++|++++|+||||||||||++.|++.. .+ |...|. |+|++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 6899999999999999999999999999854 21 111356 888886531 12234555554433222
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-------hCCcEE
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1002 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~-------~~P~iL 1002 (1206)
++.+|+.+.. . .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 3333332210 0 01456777777777777 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 1003 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 1003 ~LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|... ..-..|+...... ||+++.+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~ 307 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAH 307 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCT
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEee
Confidence 9999999999852 3556666777665 4999999999865 3333444444444 4554433
No 170
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.51 E-value=1e-15 Score=173.49 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=102.6
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTVYESLL 936 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~~Tv~e~l~ 936 (1206)
+|++++|+||||||||||+++|+|...+. .|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999999975532 58999999875321 11 245899999998888899999987
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHH
Q 000971 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1014 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LDEPTsgLD~~ 1014 (1206)
+... +. .+ ..+++..|+.+..+.. ++..++||++|||+|+.+|+ +|.|| |+++.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--- 234 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--- 234 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT---
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH---
Confidence 6421 10 00 0122233333222222 45566899999999999999 45555 55554
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 000971 1015 AAAIVMRTVRNTVDT-GRTVVCTIHQPG 1041 (1206)
Q Consensus 1015 ~~~~i~~~l~~~~~~-g~tvi~~~H~p~ 1041 (1206)
.+++.++++.+. |.|+|++||+..
T Consensus 235 ---~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 235 ---NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred ---HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 455566666544 899999999854
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.51 E-value=1.8e-15 Score=164.36 Aligned_cols=153 Identities=18% Similarity=0.137 Sum_probs=90.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---C-CceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---L-KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~---~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
+-+++|++++|+||||||||||+++|+|.+.+. . ...|.|.+++... ...+.++++.|...+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 689999999999999999999999999954431 0 0134555555321 001123333333222222 3333322
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+. +..++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 1122222
Q ss_pred -hhHHHHHHHHh-------cCCccceeecCCCCCCHH-------H-----HHHHHHHHHHHHHhcCCeEEEEEecCch--
Q 000971 329 -RKRVTTGEMMV-------GPALALFMDEISTGLDSS-------T-----TFQIVNCLKQHVHINSGTAVISLLQPAP-- 386 (1206)
Q Consensus 329 -kkRvsia~~l~-------~~~~vlllDEptsgLDs~-------t-----~~~i~~~L~~~~~~~~~t~vi~i~q~~~-- 386 (1206)
++.+..++.++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 22234444443 489999999999999984 1 2367788887776544 44555677444
Q ss_pred --hHHhhcCeEEEEcCC
Q 000971 387 --ETYDLFDDIILLSDG 401 (1206)
Q Consensus 387 --~~~~~fD~vilL~~G 401 (1206)
.+...+|.++.|++|
T Consensus 184 g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 184 GHILAHSATLRVYLRKG 200 (231)
T ss_dssp ------CCSEEEEEEEC
T ss_pred chhhHhhceEEEEEEec
Confidence 478889999999875
No 172
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.50 E-value=4.9e-15 Score=187.53 Aligned_cols=154 Identities=14% Similarity=0.044 Sum_probs=102.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+++|+|+. ++|++++|+|||||||||||++|+|....+. .|..+... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 9999999999999999999999998421100 12111111 123555544 344455555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
++... .+.+|+|+++ +..+..++.+|++||||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44210 1246667664 4555567899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 1014 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 1014 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
.....+ +.+++.+.+ .|+|||++||++. +...+|++..+.+ |++.+.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 776664 788888887 4999999999975 4567887766654 555544
No 173
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.49 E-value=5.9e-16 Score=166.36 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=104.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCC--CCCCHHHHHHHHhh
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI--GEMTVRETLAFSAR 252 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~Etl~f~~~ 252 (1206)
.++|++++|+||||||||||+++|+|.+.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998653 378999988776 67899988765321
Q ss_pred hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh----
Q 000971 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE---- 328 (1206)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (1206)
.. .. .+ ...+...++.+++.+..+.. ...+|+||
T Consensus 61 ~~---~~-------------------~~---------------~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---DA-------------------FD---------------LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG---GG-------------------BC---------------HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch---hh-------------------hh---------------HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 00 00 11233455666766544433 34688986
Q ss_pred hhHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsg-------LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q 383 (1206)
+||++++++++.+|.++++||||++ ||+.....+.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998876544345555544443
No 174
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=4.3e-14 Score=158.85 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=102.6
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
.+++|++++|+||||||||||+..+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999997432 2333 23443211 2346677665421 01111111 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHH---HH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1017 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs--gLD~~~---~~ 1017 (1206)
. +... ..++++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 2356678888887766554 356999998865 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 000971 1018 IVMRTVRNTV-DTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1018 ~i~~~l~~~~-~~g~tvi~~~H~p~ 1041 (1206)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999865
No 175
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.48 E-value=7.1e-15 Score=169.95 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=86.5
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
.+.+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999965321 12455443333221 11111233333321111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~ 1022 (1206)
.++..+ +||++|..+|++|++|||| |..+...
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 122222 8999999999999999999 6665443
Q ss_pred HHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1023 l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+.+++.+|+|||+|+|+++. + ..+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 34456679999999999873 3 889999998653
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=2.3e-15 Score=170.80 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=80.4
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK-LDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~-l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1206)
.+.+++++++.| +|+||||||||||+++|+|. +.+. +| |.++|.++..-...+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6665 78 8888876643222345789999888888999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|.||+.|+..... ..+++ ..++++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHH
Confidence 9999887532110 00000 001111111 11 2345
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsg-LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~ 385 (1206)
++|||||||+.+|++++ ++++||||++ ||+... +.++++.. ....+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 79999999999988875 9999999985 999872 45555432 2245555555554
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.46 E-value=2.7e-15 Score=173.70 Aligned_cols=168 Identities=19% Similarity=0.187 Sum_probs=98.1
Q ss_pred eEeece-eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCC-CCceeE-EEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 166 TILKDV-SGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSS-LKVSGR-VTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 166 ~iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l--~~~-~~~~G~-I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
..|+++ +|.|++|++++|+||||||||||++.|++.. +++ ....|. |.+++.+. + ..+.++|++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 345665 6899999999999999999999999999987 433 011367 77777543 1 12345666665444333
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 444444332100
Q ss_pred cccCChhhhhHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEE
Q 000971 321 IRGISGGERKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLKQHVHINSGTAVISL 381 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~-------~~~~vlllDEptsgLDs~t------------~~~i~~~L~~~~~~~~~t~vi~i 381 (1206)
-|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 0233444444444444 7899999999999999852 3556667777776444 455556
Q ss_pred ecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 382 LQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 382 ~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
.|........|++......|+++.+++
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 676655555566677777787766654
No 178
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.46 E-value=9.1e-15 Score=158.91 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=105.7
Q ss_pred EEeeccee-eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccc---eEEEeecCCCCCCCCC
Q 000971 855 VLLNGLSG-AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~~T 930 (1206)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..|+.+|..... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 46889885 8999999999999999999999999974321 1234444333221111000 011111110000 000
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1008 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LDEPT 1008 (1206)
+ ++.....++ ...+ ....|.++.++...+.....+|+ +|++||||
T Consensus 87 ~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 I------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp E------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred E------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 000000000 0000 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHHhcCeEEEEecC
Q 000971 1009 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPG-------IDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1009 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~-------~~i~~~~d~v~ll~~g 1057 (1206)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...+|++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99888999999999864 5999999999973 2377789999999863
No 179
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.46 E-value=4.7e-15 Score=192.10 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=110.1
Q ss_pred ceEeeceeeeEeC-------CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEE-EecCCCC
Q 000971 165 LTILKDVSGIIKP-------GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA-YISQHDN 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~ 236 (1206)
..|++|+++.+++ |++++|+|||||||||||++| |.+.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 88642 11234 8999752
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
.+||.|++.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555410 0 01110000
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~-i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.....+|++++ ++++|++++.+|++++||||++|+|+..... ++..|+.+.... +.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01234677666 4999999999999999999999999988544 567787775432 445566788888888889998
Q ss_pred EEEcCCeEE--EecChH
Q 000971 396 ILLSDGQIV--YQGPRE 410 (1206)
Q Consensus 396 ilL~~G~iv--~~G~~~ 410 (1206)
.++ +|++. +.|+++
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556544
No 180
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=2.4e-16 Score=166.22 Aligned_cols=159 Identities=22% Similarity=0.245 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHHHHhhhcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~ 256 (1206)
|++++|+||||||||||+++|+|.++ + +| |.++|....+... ++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78899999999999999999999987 5 78 9999887754322 46789999963 111 1111 00000
Q ss_pred CchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHH-H
Q 000971 257 GSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT-G 335 (1206)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi-a 335 (1206)
.++ + ...+..+|.. ...+|||||+++.. +
T Consensus 67 -------------------~~~-~-----------------------------~~~~~~v~~~-~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP-P-----------------------------GKRECRVGQY-VVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC-S-----------------------------SSCCEESSSS-EECHHHHHTTTTTTTC
T ss_pred -------------------cCC-c-----------------------------cccccccceE-EEcchHHHHHHHHHHh
Confidence 000 0 0012245533 34699999999844 4
Q ss_pred H---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecCchhHHhhcCeEEEEcCCeEEEec
Q 000971 336 E---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLKQHVHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1206)
Q Consensus 336 ~---~l~~~~~vlllDE--ptsgLDs~t~~~i~~~L~~~~~~~~~t~vi---~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1206)
+ |+..+|+|++||| |+..+|......+.+.++ ...++|+ +++|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 898898876444444443 2345553 3336553 3566888888889887644
No 181
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.46 E-value=1.3e-13 Score=139.23 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=68.7
Q ss_pred CcccccCChhhhhHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000971 318 DEMIRGISGGERKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia------~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1206)
+..+..|||||||||+|| ++|+.+|++++|||||+|||+.+...+.+.|+++.. .+.++|+ ++|.. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEE-EEChH-HHHHh
Confidence 455678999999999876 899999999999999999999999999999998754 3455544 56665 67889
Q ss_pred cCeEEEE--cCCeE
Q 000971 392 FDDIILL--SDGQI 403 (1206)
Q Consensus 392 fD~vilL--~~G~i 403 (1206)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=4.3e-16 Score=164.34 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=102.5
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
|++++|+||||||||||+++|+|... . +| |.++|....+ ..+++.+||++|+. .... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccccc-
Confidence 78999999999999999999999654 2 46 7777766543 23467789999975 2111 111 111110
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1019 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl-~ia~---aL~~~P~iL~LDE--PTsgLD~~~~~~i 1019 (1206)
.+ ....+..+|.. ...+|+|||+++ ++++ |+..+|+|||||| ||..+|......+
T Consensus 68 -~~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 68 -PP-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp -CC-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred -CC-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 00011133332 235999999888 4454 6789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1020 MRTVRNTVDTGRTVVC----TIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1020 ~~~l~~~~~~g~tvi~----~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
.+++ +...++|+ ++|+.+ ....|+|..+. +|+++....-.
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~n 172 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKEN 172 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSSS
T ss_pred HHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChHh
Confidence 5444 44455553 238864 23457776665 57777765533
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.46 E-value=4e-15 Score=163.85 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCC-----HHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH---------Hhhc
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLD-----SSTTFQIVNCLKQHVHINSGTAVISLLQPAPET---------YDLF 392 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLD-----s~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~---------~~~f 392 (1206)
++..+...+..-..+|+++++||||++|| ......+.+.++.+.. .+.|+ +.++|...++ ..+|
T Consensus 121 ~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~ti-i~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTT-ILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEE-EEEECCC----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeE-EEEECCCCCCcccccccChhhEe
Confidence 33333333444457999999999999997 5666667788877643 44454 4566776666 6788
Q ss_pred -CeEEEEc
Q 000971 393 -DDIILLS 399 (1206)
Q Consensus 393 -D~vilL~ 399 (1206)
|+|++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999995
No 184
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.45 E-value=1.6e-15 Score=187.95 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=110.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCeeCCC------CCccceEEEecCCCCCCCCCCHHHHHHHHhhh
Q 000971 181 TLLLGPPASGKTTLLLALAGKLDS-SLKVSGRVTYNGHDMGE------FVPERTAAYISQHDNHIGEMTVRETLAFSARC 253 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~~-~~~~~G~I~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~ 253 (1206)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876 5 8999999988521 12346799999999999999999999886432
Q ss_pred cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHH
Q 000971 254 QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333 (1206)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 333 (1206)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0111 11222
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch----hHHhh---c-----CeE
Q 000971 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP----ETYDL---F-----DDI 395 (1206)
Q Consensus 334 ia~~l~~~~~vlllDEp------tsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~----~~~~~---f-----D~v 395 (1206)
++......|+++++||| |+|||+....++.+.++.+.....+.+++.++|..+ ++.++ . ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22223357999999999 999999999999999998765555666666776654 12222 2 357
Q ss_pred EEEcCCeEEEecChHHHHH
Q 000971 396 ILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1206)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887655544
No 185
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.45 E-value=6.3e-14 Score=178.80 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=97.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..|++|||+.+++|++++|+|||||||||||+++++..-.. ..|. +.+.. .+.++..+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccch-hhhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 0010 00110 01111112222222222
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
+++. ...+.+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2211 112468
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE-EcCCe
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~-~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil-L~~G~ 402 (1206)
|+|+++++.|+++ +.+|+++||||||+|||+.....+. ..++.+....+.+ ++.++|.. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8899999999999999999999998 5666665433444 45566664 45566665421 33444
Q ss_pred EEE
Q 000971 403 IVY 405 (1206)
Q Consensus 403 iv~ 405 (1206)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.44 E-value=3.2e-13 Score=161.28 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=63.2
Q ss_pred ccCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 322 RGISGGERKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~----~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
..||||||||++||++++ .+|++++||||+++||+.....+.+.|+++.. .++.++.++|. .+....||++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999988642 23445556666 567788999999
Q ss_pred Ec
Q 000971 398 LS 399 (1206)
Q Consensus 398 L~ 399 (1206)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 187
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.44 E-value=1.3e-14 Score=161.08 Aligned_cols=133 Identities=15% Similarity=0.232 Sum_probs=93.0
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
++|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCccee-------
Confidence 4799999 8999999999999999999999999998752 1799999986643 333321000
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
-.+ ..+|++. ..+
T Consensus 75 ------v~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 75 ------VNQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp ------EEE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred ------eeH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 000 0011210 012
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
|++||++|..+|+++++|||| |..+...+++ . +. .+.++ ++++|... +...+|++++|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~v-l~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLV-FGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEE-EEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEE-EEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988655443 2 22 34454 44555544 6788999988864
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.43 E-value=6.6e-15 Score=157.61 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC---CCeeEEEEEEcCc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGY 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 905 (1206)
+.++|+++.+.. .+|++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 567888877641 36777 8899999999999999999999999999651 0122344332110
Q ss_pred c-C-CcccccceEEEeecCCCCCCCCC---HHHHHHHhhh---------hcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000971 906 P-K-KQETFARISGYCEQNDIHSPFVT---VYESLLYSAW---------LRLPPEVDSETRKMFIEEVMELVELKPLI-Q 970 (1206)
Q Consensus 906 ~-~-~~~~~~~~~gyv~q~~~~~~~~T---v~e~l~~~a~---------lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 970 (1206)
- . ....+....|+.... .+.-. .+..+.+... +...........+..+.+.++..++.... .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 0 000000011111100 00000 0111111000 00000000011223355666666665421 2
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000971 971 SLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032 (1206)
Q Consensus 971 ~~~g~~~~~~LSgGqrqr-l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1032 (1206)
.. ...+|+||||| +.++++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 22 24689999999 89999999999999999999999999999999999988766644
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.42 E-value=1.4e-14 Score=164.00 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---------cceEEEecCCCCCCCCCCHHHHH
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---------ERTAAYISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~Etl 247 (1206)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|+...+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999887 8999999988754321 23589999998889999999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChh
Q 000971 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1206)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1206)
.++.. .+. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 87532 100 00 0111223222111 124455
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 000971 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP 384 (1206)
Q Consensus 328 qkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~ 384 (1206)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.++|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999994433 344444445566666654444555555 5554
No 190
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.42 E-value=3.2e-14 Score=179.05 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=94.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4689999999 99999999999999999999999753 22 45431 0 01245677766 5566666
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.|++.+ +
T Consensus 629 ~d~l~~-------------------------------------------------------------------------g 635 (765)
T 1ewq_A 629 SDDLAG-------------------------------------------------------------------------G 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHh-------------------------------------------------------------------------c
Confidence 665431 5
Q ss_pred CChhhhhHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 324 ISGGERKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 324 LSGGqkkRvsia~~l--~~~~~vlllDEp---tsgLDs~t~-~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.++|+ ++|..+. ..++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 567777765 3445554 5666443 3444
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.40 E-value=1.9e-14 Score=178.44 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=93.4
Q ss_pred EEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998643 13799999997631 12456789999999999999999999976432110
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1017 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP------TsgLD~~~~~ 1017 (1206)
... .++| ++++.++++....|+++|+||| |+|||+....
T Consensus 127 ---------------------~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 ---------------------GEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp ---------------------CSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred ---------------------CCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0111 1122223333458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 000971 1018 IVMRTVRNTVDT--GRTVVCTIHQPG 1041 (1206)
Q Consensus 1018 ~i~~~l~~~~~~--g~tvi~~~H~p~ 1041 (1206)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 677888999876
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=7.8e-15 Score=172.70 Aligned_cols=163 Identities=11% Similarity=0.081 Sum_probs=93.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.+. ++.+++|+||.| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 366777765542 245899999998 999999999999999999965421112323232211
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
....+.++|++|++.+.+.+||.|++.|..... .......+.+.++ . .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~---------~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID---------S--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH---------H--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH---------H--------HHHHHHHH
Confidence 112346899999888888899999987754321 0111011111111 1 25667788
Q ss_pred HHHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000971 988 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040 (1206)
Q Consensus 988 rl~ia~aL~~~P~---iL~LDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p 1040 (1206)
|++|||+++.+|+ +|++|||| .|||+... +.++.+. .+.+||+++|.-
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~ 177 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKA 177 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEEST
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcc
Confidence 9999999999999 99999999 69998773 3344454 378888888864
No 193
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.38 E-value=6.4e-13 Score=144.27 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=62.1
Q ss_pred cCChhhhhHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCc--------hhHHh
Q 000971 323 GISGGERKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLKQHVHINSGTAVISLLQPA--------PETYD 390 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~--vlllDEptsgL--Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~--------~~~~~ 390 (1206)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999888887777778999 99999999888 9988899999999887654 45556677776 56888
Q ss_pred hcCeEEEEcCC
Q 000971 391 LFDDIILLSDG 401 (1206)
Q Consensus 391 ~fD~vilL~~G 401 (1206)
++|+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
No 194
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.36 E-value=6.9e-13 Score=161.99 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 979 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 979 ~~L-SgGqrqrl~ia~aL~~~P--~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+||||+||+|. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 000971 1056 RG 1057 (1206)
Q Consensus 1056 ~g 1057 (1206)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 195
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.36 E-value=1.7e-12 Score=134.53 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE
Q 000971 978 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~----~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l 1053 (1206)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999864 57899999995 46789999986
Q ss_pred Ee--cCcEEEEEcC
Q 000971 1054 MK--RGGQEIYVGP 1065 (1206)
Q Consensus 1054 l~--~gg~~~~~g~ 1065 (1206)
+. +|...++...
T Consensus 139 v~~~~g~s~~~~~~ 152 (173)
T 3kta_B 139 VSMRDGVSKVVSLS 152 (173)
T ss_dssp EEEETTEEEEEECC
T ss_pred EEecCCEEEEEEEE
Confidence 54 3333344443
No 196
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.36 E-value=1.2e-13 Score=174.95 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=99.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+++|+++. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999964211 012 11110 1124555554 55666666
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
|++..+ .+.+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 665431 0135
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i-~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|+|+++ ++.+...+.+|++++||||++|+|+.....+ ...++.+....+.++ +.++|.. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v-l~~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT-LFATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE-EEECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE-EEEeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444445889999999999999999877776 566776654234454 4466665 44568888777778877
Q ss_pred EEec
Q 000971 404 VYQG 407 (1206)
Q Consensus 404 v~~G 407 (1206)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 197
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.35 E-value=4.2e-12 Score=136.72 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=99.6
Q ss_pred EEeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 855 VLLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 855 ~vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++++.. .. .+. +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~----~~~-~ 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GG----FSP-E 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CC----CCH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CC----CCH-H
Confidence 3577777 4899999999999999999999999998 221 123333332 11 111 1
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCCC
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSG 1010 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG--qrqrl~ia~aL~~~-P~iL~LDEPTsg 1010 (1206)
.+.- .... ...+. +++++.+.+ ...+++ +++++..+++++.+ |++|++||||+.
T Consensus 61 ~~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1110 0000 01111 122222211 123333 46788899999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCch------------HHHHhcCeEEEEecC
Q 000971 1011 LDARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPGI------------DIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1011 LD~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~p~~------------~i~~~~d~v~ll~~g 1057 (1206)
+|... ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99732 34566668887654 8999999998651 366789999999864
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=6e-14 Score=164.26 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=111.1
Q ss_pred eecceeeeeCCeE--EEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000971 857 LNGLSGAFRPGVL--TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 857 L~~vs~~i~~G~~--~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
|++||+.+++|++ +||+||||||||||+++|+|..- .|.. +.... ....++.++|++|++.+++.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 1211 11111 11224578999999888888999999
Q ss_pred HHHhhhhcCCCCCC--HHHHHHHHHHHHHHc-CCcc----ccccc----cC--CCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 935 LLYSAWLRLPPEVD--SETRKMFIEEVMELV-ELKP----LIQSL----VG--LPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 935 l~~~a~lr~~~~~~--~~~~~~~v~~~l~~l-~L~~----~~~~~----~g--~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+.|+.......... .+..+...++.|+.. ++.. ..|.. +. .+...+|+-.+ +.|+++|..+++|
T Consensus 103 ~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~v 179 (427)
T 2qag_B 103 VGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNI 179 (427)
T ss_dssp ECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEE
T ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCE
Confidence 87653210000000 011223445555554 4431 12221 11 12224577766 7899999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 000971 1002 IFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1039 (1206)
Q Consensus 1002 L~LDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1039 (1206)
|++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 180 I~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 180 IPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999988889888986 77789999988754
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=3.3e-14 Score=153.61 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=86.2
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHH
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV----YESLL 936 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv----~e~l~ 936 (1206)
.-..++|++++|+||||||||||+++|+|...+....|.|.+.+.+... ..++.++|++|++..++.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3456899999999999999999999999976532367899998876543 223457899987544443333 22221
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000971 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~ 1016 (1206)
+.... .+.| +++ ..+++..++++||| ||+.++
T Consensus 89 ~~~~~-------------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFGNY-------------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETTEE-------------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHhcc-------------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 11100 0111 111 34455668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1017 AIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1017 ~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
..+++.+. +|.||++++|+++
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHcc----CCEEEEEECCCHH
Confidence 99998875 5899999999975
No 200
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.33 E-value=1.2e-12 Score=147.10 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=97.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhh
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARC 253 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~ 253 (1206)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 589999999999999999999999998654 3544 2343321 1346788877652 2 1111 000
Q ss_pred cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHH
Q 000971 254 QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333 (1206)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 333 (1206)
. .+ ..+ -+ ....+.+++.+++.+..+. .+..+|+||++++
T Consensus 88 ~----------~~---g~~------~~---------------~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 H----------AL---GAH------LS---------------AEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp H----------HH---HTT------SC---------------HHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred H----------HH---Hhh------cC---------------hhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0 00 000 00 0113445677777665443 3456999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 334 ia~~l~~~~~vlllDEpts--gLDs~t~---~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
++++.+|+++++||||+ ++|.... .++++.|+.+++..+.| |+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 57788999999999999 9997443 77888898887655555 4456666543
No 201
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.30 E-value=5.3e-13 Score=155.71 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=95.5
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
+|++++ +++|++++|+||||||||||+++|+|...+. ..|.|.+.|.+... ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee------------
Confidence 677766 8999999999999999999999999965421 15888777655432 2344567777741
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
+++. ...+ +.+|+.+|..+|++|++|||| |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1221 1134 468999999999999999999 7765
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
.. .+++. +..|.+|++|+|..+ +...+||++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 34443 456999999999965 577889987764
No 202
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.29 E-value=3.3e-16 Score=165.41 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=107.7
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 946 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~ 946 (1206)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...|+++|.....+..++++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 6899999999999999999999732 46788888643221 1246677655444456788887654322110
Q ss_pred CCHHHHHHHHHHHHHHcCCccccccccCC---CCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 000971 947 VDSETRKMFIEEVMELVELKPLIQSLVGL---PGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 947 ~~~~~~~~~v~~~l~~l~L~~~~~~~~g~---~~~~~L--SgGqrqrl~ia~------aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
-+...+.+...+. .....+ |+|++|++.++. +|+.+|+...+|+ +||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011110000 000124 778888888888 8999999888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-CchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQ-PGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~-p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
... ++.++.+...+.+||.++|+ ++ ++.+.+|+|+ +.|++++.|++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~ 179 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAG 179 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC---
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecC
Confidence 777 88888776668899999998 76 6888999998 46888888875
No 203
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.28 E-value=1e-14 Score=153.93 Aligned_cols=152 Identities=13% Similarity=0.009 Sum_probs=92.3
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..||.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 67999999999999999999999999732 47899998653221 11234567776543 3578888887654221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~ 1022 (1206)
...... ..++.+++..++...... +. .+..+|+|++|++.++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000000 000111111112111100 10 12359999999999999999999876 688777777766
Q ss_pred HHHHHhCCCEEEEEe
Q 000971 1023 VRNTVDTGRTVVCTI 1037 (1206)
Q Consensus 1023 l~~~~~~g~tvi~~~ 1037 (1206)
++.+...+..+|-++
T Consensus 144 ~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 144 FADLGAFEHHVLPVS 158 (191)
T ss_dssp TTCCGGGGGGEEECT
T ss_pred HhccCcccccEEECC
Confidence 655433223344333
No 204
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.27 E-value=1.1e-12 Score=152.53 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=100.0
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEee-cCCCCCCCCCHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTVYE 933 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-q~~~~~~~~Tv~e 933 (1206)
+++++|+.+++|++++|+||||||||||+++|+|...+ ..|.|.++|..... ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 37999999853211 12456678887 54321
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
+++++...+-.|+.+|..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777888999999999985
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1014 ~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..+.+.|+.+.....|++.++|..+ ....+||+..|..++
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667666543457899999976 567899999998753
No 205
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.27 E-value=2.5e-13 Score=146.71 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=96.8
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH----HHHHH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV----RETLA 248 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~Etl~ 248 (1206)
-..++|++++|+||||||||||+++|+|.++++ ...|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998753 3589999998765432 23457899997544443333 12211
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+ .|+ +.|-.
T Consensus 89 ~------------------------------------------------------------------~~~-----~yg~~ 97 (219)
T 1s96_A 89 V------------------------------------------------------------------FGN-----YYGTS 97 (219)
T ss_dssp E------------------------------------------------------------------TTE-----EEEEE
T ss_pred H------------------------------------------------------------------Hhc-----cCCCC
Confidence 1 011 11111
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.+.|...++.. ++ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 222 23344556999999 99999999988764 35566667777666654 32 7777 678
Q ss_pred hHHHHHHHH
Q 000971 409 RELVLEFFE 417 (1206)
Q Consensus 409 ~~~~~~~f~ 417 (1206)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765443
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=7.9e-13 Score=155.65 Aligned_cols=150 Identities=12% Similarity=0.063 Sum_probs=85.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ -...+.++|+.|.+..++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 356899999998 99999999999999999999764311 2222222111 0112458899999888889999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.||+.|+...... .. ...+.+++- ..
T Consensus 93 ~Dt~g~~~~~~~~-~~-----------------------------------~~~i~~~i~------------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-NC-----------------------------------WQPVIDYID------------------SK 118 (418)
T ss_dssp EECC-----------------------------------------------CHHHHHHHH------------------HH
T ss_pred eechhhhhhccch-hh-----------------------------------HHHHHHHHH------------------HH
Confidence 9999885421100 00 000111110 13
Q ss_pred CChhhhhHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000971 324 ISGGERKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~---vlllDEpt-sgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q 383 (1206)
++.+.++|+.||++++.+|+ ++++|||| .|||+... +.++.+. .+.++|+++++
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh--ccCcEEEEEEc
Confidence 66678889999999999999 99999999 69998763 3344432 24555555544
No 207
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.25 E-value=8.6e-13 Score=152.51 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 333 sia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
+||++|..+|+++++|||+ |..+...+.+ .+. .+.+ |++++|....+ ..+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666444333 332 3555 55566665555 889999988654
No 208
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.25 E-value=7.6e-15 Score=171.51 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=94.1
Q ss_pred EeeceeeeEeC--CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 167 ILKDVSGIIKP--GRMTLLLGPPASGKTTLLLALAGKLDSSLKVS----GRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 167 iL~~vs~~i~~--G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~----G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
+.+.|+..|++ |+.++|+||||||||||+++|+|.+++. + |+|.+++... ..+..++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 35689999999 9999999999999999999999999886 6 6665532100 00001111
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
... +++.+... . .. ....+..+ ++. ++.....++ .
T Consensus 221 ~~~-~~I~~~~q--~----~~-~~~~t~~~---nl~-----------------------------~~~~~~~~~-----~ 255 (365)
T 1lw7_A 221 SDY-PQMALGHQ--R----YI-DYAVRHSH---KIA-----------------------------FIDTDFITT-----Q 255 (365)
T ss_dssp TTH-HHHHHHHH--H----HH-HHHHHHCS---SEE-----------------------------EESSCHHHH-----H
T ss_pred hHH-HHHHHHHH--H----HH-HHHHhccC---CEE-----------------------------EEeCCchHH-----H
Confidence 122 23333210 0 00 00000000 000 000000011 1
Q ss_pred cccCChhhhhHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHh
Q 000971 321 IRGISGGERKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~-~~~~vlllDE---pt------sgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1206)
...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++. +..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~~-~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESPS-YLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECSS-HHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCCC-HHHH
Confidence 1236677788888887775 5899999999 65 5889999999999988765533444444 55653 4445
Q ss_pred hcCeEEEE
Q 000971 391 LFDDIILL 398 (1206)
Q Consensus 391 ~fD~vilL 398 (1206)
++|.+.+|
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=2.7e-14 Score=150.70 Aligned_cols=169 Identities=9% Similarity=0.051 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~ 257 (1206)
|++++|+||||||||||+++|++. . .|.|.++|.++... ...++++|.+...+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 789999999999999999999983 2 68899998665332 234677776555556788888877543110
Q ss_pred chhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC---cccccC--ChhhhhHH
Q 000971 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD---EMIRGI--SGGERKRV 332 (1206)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkkRv 332 (1206)
.. +-....+...+. +..+.+ |+|+++++
T Consensus 71 ----------~~-------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------LA-------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------HT-------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------hc-------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 00 000000000000 011234 89999998
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-chhHHhhcCeEEEEcCCeEEE
Q 000971 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP-APETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 333 sia~------~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~-~~~~~~~fD~vilL~~G~iv~ 405 (1206)
.++. +++.+++...+|+ +||+..... .+.++.+.. .+.+ ++...|. .+++.+.+|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8777 8888888888884 899987777 777776532 3334 4445565 678889999998 9999999
Q ss_pred ecChHHH
Q 000971 406 QGPRELV 412 (1206)
Q Consensus 406 ~G~~~~~ 412 (1206)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987644
No 210
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.24 E-value=3.4e-11 Score=124.63 Aligned_cols=91 Identities=22% Similarity=0.290 Sum_probs=69.6
Q ss_pred ccccCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 320 MIRGISGGERKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~----~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +.++|+ ++|. ..+...+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~iv-ith~-~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIV-ITLR-DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSC-HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEE-EEec-HHHHHhCCEE
Confidence 35679999999999999996 56799999999999999999999999988753 345444 5555 3577899999
Q ss_pred EEE--cCCeE-EEecChHHHHH
Q 000971 396 ILL--SDGQI-VYQGPRELVLE 414 (1206)
Q Consensus 396 ilL--~~G~i-v~~G~~~~~~~ 414 (1206)
+.+ .+|.. +.....++..+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHH
Confidence 866 46643 34455554443
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=1.2e-12 Score=137.90 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=88.4
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-ccceEEEecCCCCCCCCCCHHHHHHHHhh
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTVRETLAFSAR 252 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~ 252 (1206)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|... +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 799999987643221 1234678887643 46789999877543
Q ss_pred hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHH
Q 000971 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332 (1206)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRv 332 (1206)
... ...... . ++.++..+++..... . +..+..+|+|++||+
T Consensus 78 ~~~------------~~~~~~--~----------------------~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------KEGYFV--I----------------------LDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------HTSCEE--E----------------------ECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HHh------------ccCCeE--E----------------------EeccCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 110 000000 0 000000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 333 sia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 577766666665543
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.22 E-value=2.4e-14 Score=167.28 Aligned_cols=163 Identities=10% Similarity=0.061 Sum_probs=97.8
Q ss_pred EeecceeeeeC--CeEEEEEccCCCcHHHHHhhhcCCCCCCeeE----EEEEEc----CccCC--cccccceEEEeecCC
Q 000971 856 LLNGLSGAFRP--GVLTALMGVSGAGKTTLMDVLSGRKTGGYIT----GNITIS----GYPKK--QETFARISGYCEQND 923 (1206)
Q Consensus 856 vL~~vs~~i~~--G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~q~~ 923 (1206)
+.+.|++.|++ |+.+||+||||||||||+++|+|...+ .. |++.++ |.+.. ...+ +.++|++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 35689999999 999999999999999999999997653 34 555553 21110 0001 1122222221
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCcEE
Q 000971 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSII 1002 (1206)
Q Consensus 924 ~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~-~~P~iL 1002 (1206)
..+ ..|+.||+.|. + .+..+.. ...+|+|++++..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 100 01111111110 0 0000111 1135667778888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1003 FMDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1003 ~LDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
|||| |+ +++|...+..+.+.|+++.+ .|.+||+++|. + +....+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 68999999999999988754 48999999974 3 3555666666554
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.22 E-value=3.6e-12 Score=139.45 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=87.6
Q ss_pred eecce-eeeeCCeEEEEEccCCCcHHHHHhhhcCC--CCC---CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000971 857 LNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 857 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 930 (1206)
|+.+- +-+++|++++|+||||||||||+..|++. ..+ +...|.+++++.... .
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~ 71 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------R 71 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------C
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------C
Confidence 44433 67999999999999999999999999982 221 112466777664310 0
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH-HHHHHHHHh--hCCcEEEEeCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEP 1007 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq-rl~ia~aL~--~~P~iL~LDEP 1007 (1206)
..........+. ... +++++.+.+ ....+..+.. .+.-..+++ .+|++|++|||
T Consensus 72 ~~~~~~~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 000000000010 111 112221110 0124444433 233344444 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCchH------------------HHHhcCeEEEEec
Q 000971 1008 TSGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPGID------------------IFDAFDELFLMKR 1056 (1206)
Q Consensus 1008 TsgLD~~-------~-----~~~i~~~l~~~~~~-g~tvi~~~H~p~~~------------------i~~~~d~v~ll~~ 1056 (1206)
|+.+|+. + ...+++.|++++++ |+|||+++|..... +...+|.+++|.+
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999975 3 34556666666554 99999999965421 1126899999987
Q ss_pred C
Q 000971 1057 G 1057 (1206)
Q Consensus 1057 g 1057 (1206)
+
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 4
No 214
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.22 E-value=3.6e-15 Score=170.74 Aligned_cols=156 Identities=14% Similarity=0.079 Sum_probs=99.7
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCCCC------CeeEEEEEEcCccCCcc------------------cccceEEEe---e
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 920 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 920 (1206)
++++|+|+|||||||||+.|+|...+ ....|+|.|||.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 12368888888764321 223345666 5
Q ss_pred cCCCCCCCCCHHHHHHHhh--hh-cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 000971 921 QNDIHSPFVTVYESLLYSA--WL-RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA 997 (1206)
Q Consensus 921 q~~~~~~~~Tv~e~l~~~a--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~ 997 (1206)
|+..+.+..++.|++.++. .+ +.-...........++.++..+++.+..+... .+|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 6655555677777664321 00 00000000000111222333444444444432 589999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
+|+++ ||| ..+.+.|+++. .+.||++++|.+-
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888874 5899999999864
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.22 E-value=1.4e-12 Score=149.97 Aligned_cols=122 Identities=18% Similarity=0.117 Sum_probs=86.7
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 4556654 37999999999999999999999997640 247889887 65542 2345678999999888888899883
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL 995 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL 995 (1206)
. + ...+.++....+.++++.+++.++.+... .++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455566677889999999998888763 4799 999999999875
No 216
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.21 E-value=5.4e-13 Score=136.38 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=65.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 76 899999997764211111 2899987777 89999
Q ss_pred HHHHH
Q 000971 245 ETLAF 249 (1206)
Q Consensus 245 Etl~f 249 (1206)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.21 E-value=3.2e-11 Score=141.05 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 978 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 978 ~~~LSgGqrqrl------~ia~aL~~~-P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
+..|||||+||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|+|+|. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999864 3579999999985 5688999
Q ss_pred EEEEecCc
Q 000971 1051 LFLMKRGG 1058 (1206)
Q Consensus 1051 v~ll~~gg 1058 (1206)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998644
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.21 E-value=1.5e-11 Score=132.43 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=56.7
Q ss_pred CChhh--hhHHHHHHHHhcC-CccceeecCCCCCCHH--------HHHHHHHHHHHHHHhcCCeEEEEEecCch------
Q 000971 324 ISGGE--RKRVTTGEMMVGP-ALALFMDEISTGLDSS--------TTFQIVNCLKQHVHINSGTAVISLLQPAP------ 386 (1206)
Q Consensus 324 LSGGq--kkRvsia~~l~~~-~~vlllDEptsgLDs~--------t~~~i~~~L~~~~~~~~~t~vi~i~q~~~------ 386 (1206)
.++++ ++++..+++++.. |+++++||||+++|.. ....+++.|+++++..+.++|+ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899875 9999999999999973 2345667788887655656555 556543
Q ss_pred -------hHHhhcCeEEEEcCC
Q 000971 387 -------ETYDLFDDIILLSDG 401 (1206)
Q Consensus 387 -------~~~~~fD~vilL~~G 401 (1206)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467889999999754
No 219
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.19 E-value=5.3e-12 Score=146.80 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=56.3
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-ccceEEEec-CCCCC--CCCCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYIS-QHDNH--IGEMT 242 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1206)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999987 999999985311111 245688888 65432 23444
Q ss_pred HHHHHH
Q 000971 243 VRETLA 248 (1206)
Q Consensus 243 V~Etl~ 248 (1206)
++++|.
T Consensus 241 ~~~~i~ 246 (361)
T 2gza_A 241 AATLLR 246 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 220
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.17 E-value=3.4e-13 Score=139.65 Aligned_cols=112 Identities=19% Similarity=0.109 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---c---c-ceEE----EecCCCCCCCCCCHHHHH
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---P---E-RTAA----YISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---~---~-~~~~----yv~Q~d~~~~~lTV~Etl 247 (1206)
++++|+||||||||||++.|+|.+++.....|.|.++|.++.+.. . + +.++ +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998874334799999998865432 1 1 2355 788876544 000
Q ss_pred HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChh
Q 000971 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1206)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1206)
+ .. +. . ...+.+++. .|+ ..||.|++ +||||
T Consensus 77 -------~--~~-----~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 0 001223333 023 46899997 59999
Q ss_pred hhhHHHHHHHHhcCCccc
Q 000971 328 ERKRVTTGEMMVGPALAL 345 (1206)
Q Consensus 328 qkkRvsia~~l~~~~~vl 345 (1206)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.15 E-value=6.2e-14 Score=154.54 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCeEEEEEccCCCcHHHHHhhhc---CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhh-
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL- 941 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~l- 941 (1206)
++++++|+||||||||||+++|+ |... +..|+|.++|.+... .....+++++|+..+.+..++.+++.....-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8654 346777777654321 1223345566777778888999998763210
Q ss_pred -----cCCCCCCHHHHHHHHHHHHH--HcC------------CccccccccCCCCCCCCCHHHHHHHHHHHHH-hhCCcE
Q 000971 942 -----RLPPEVDSETRKMFIEEVME--LVE------------LKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSI 1001 (1206)
Q Consensus 942 -----r~~~~~~~~~~~~~v~~~l~--~l~------------L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL-~~~P~i 1001 (1206)
... ...... ..++.+.+ .++ +....++. +..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 111111 11222221 122 11222332 235888 55 677 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 000971 1002 IFMD----EPTSGLDARAAAIVMRTVRNTVDTG 1030 (1206)
Q Consensus 1002 L~LD----EPTsgLD~~~~~~i~~~l~~~~~~g 1030 (1206)
++|| |||+|||..+...+.+.|+++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999999886553
No 222
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.15 E-value=6.2e-13 Score=146.46 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhh
Q 000971 177 PGRMTLLLGPPASGKTTLLLALA---GKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARC 253 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~La---G~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~ 253 (1206)
++++++|+||||||||||+++|+ |...++ .|+|.++|.+... ...+.+.++.|+..+++.+|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 988775 7888887754321 1123345667777788889999999875321
Q ss_pred --------cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 254 --------QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 254 --------~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
.+...... +...... . ..++--+ +. . . -.+.+ +.... ++.+..+|
T Consensus 102 ~~~~~~il~g~~~~~~---~~~~l~~-~-~~~~~vi--~L-----~---~--~~~~~-----l~r~~-----~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG---QAEALDK-I-CEVDLVI--SL-----N---I--PFETL-----KDRLS-----RRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSHH---HHHHHHT-T-CCCCEEE--EE-----E---C--CHHHH-----HHHHH-----TEEEETTT
T ss_pred cCCCeEEEECCCCCHH---HHHHHHh-h-cCCCEEE--EE-----E---C--CHHHH-----HHHHH-----cCCCcCCC
Confidence 11000000 0000000 0 0000000 00 0 0 00000 11111 23344689
Q ss_pred hhhhhHHHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 000971 326 GGERKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 326 GGqkkRvsia~~l-~~~~~vlllD----EptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
| || +++ +.+|++++|| |||+|||..+...+.+.|+.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 8 66 667 9999999999 99999999999999998887654
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=5.1e-12 Score=148.03 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=98.2
Q ss_pred eeceeeeEeCCeE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC---CccceEEEecCCCCCCCCCC
Q 000971 168 LKDVSGIIKPGRM--TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---VPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 168 L~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lT 242 (1206)
|++||+.+++|++ ++|+|||||||||||++|+|..- .| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 99999999999999999999841 22 222111 12346899999988888999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCcc----ccccc--
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEV----CADTM-- 315 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 315 (1206)
|.||+.|+.... .......+. .......+.+|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~~i~-------------------------~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYKPIV-------------------------EFIDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSHHHH-------------------------HHHHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhhHHH-------------------------HHHHHHHHHHHHHHHhhhhhhccccccccc
Confidence 999998754211 000000000 01111223334333 4431 12222
Q ss_pred --cc--CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 316 --VG--DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 316 --vg--~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
+. .+...+|+-.+ +.|+++|..+++|+++|||+..|.......+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566665 7899999999999999999999999888888888876
No 224
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.14 E-value=1.2e-12 Score=139.94 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=52.5
Q ss_pred HHHHHcCCcccccccccCcccccCChhhhhH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 000971 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkR-vsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
.+++..++... .|++. ...+|+||||| +..+++++.+|.++++|||||++|.....++++.|.++..
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 22322 23589999999 8899999999999999999999999999999999987654
No 225
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=2.4e-12 Score=151.45 Aligned_cols=171 Identities=14% Similarity=0.133 Sum_probs=98.8
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 936 (1206)
-++|++.++.|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.++.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 379999999999999999999999999999998642 234444321 2234566665531 1111111110
Q ss_pred HhhhhcCCCCCCHHHHH--HHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000971 937 YSAWLRLPPEVDSETRK--MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~ 1014 (1206)
+...............+ +.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111100 0111222222332 111 346999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEEecCCchHHHHhcCeEE
Q 000971 1015 AAAIVMRTVRNT-VDTGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 1015 ~~~~i~~~l~~~-~~~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
.+ ..++.+++. .+.|.+++.+|..-...+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444444 44577777655433334666665543
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=7.8e-12 Score=148.06 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=101.9
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------c--ccceEEEeecCCCCCC
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 927 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 927 (1206)
-++||+.+++|++++|+|+||||||||+++|+|.... ..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3689999999999999999999999999999996542 258899987654321 1 2456899999988888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCc-EEEEe
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1005 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~-~~P~-iL~LD 1005 (1206)
..||++++.+... + ..+ .+ +++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~-~-~~D--------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-R-NID--------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-T-TCS--------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-c-CCC--------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8999999987532 1 100 00 112222211111 12224457888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1039 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1039 (1206)
.||+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886654 22344432 48899999993
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.12 E-value=3.5e-12 Score=130.36 Aligned_cols=78 Identities=23% Similarity=0.093 Sum_probs=64.6
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
+.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 4 3799999998764321111 2789988778 899999
Q ss_pred HHHH
Q 000971 934 SLLY 937 (1206)
Q Consensus 934 ~l~~ 937 (1206)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=3.7e-11 Score=121.64 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=37.2
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 000971 996 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPG 1041 (1206)
Q Consensus 996 ~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~p~ 1041 (1206)
+.+|++|+||||++ +|...+..+.+.+..+.++|++ ||+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56799999999998 5555588899999988877888 889999643
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.09 E-value=1.3e-12 Score=152.50 Aligned_cols=167 Identities=15% Similarity=0.193 Sum_probs=100.7
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|.|.+.|.++. ...+..++||+|...-....+.+..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeecCCCHHHHHHH
Confidence 577766 7999999999999999999999999998752 1699987776654 3344567899993211111223444
Q ss_pred HHHHhhhcCCCc-------hhhHhHHHHHHhhhcCC-----CCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------
Q 000971 247 LAFSARCQGVGS-------RYELLTELARRENEAGI-----KPDPDIDVYMKAIATEGQEANVITDYYLKVLG------- 307 (1206)
Q Consensus 247 l~f~~~~~~~~~-------~~~~~~~~~~~~~~~~i-----~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg------- 307 (1206)
|.-+.+. .+.- ..+....+.+.. ..+. ..+.+ .....+.++....
T Consensus 202 l~~~L~~-~pd~illdE~~d~e~~~~~l~~~-~~g~~vi~t~H~~~--------------~~~~~~rl~~l~~~~~~~~~ 265 (372)
T 2ewv_A 202 LRAALRE-DPDVIFVGEMRDLETVETALRAA-ETGHLVFGTLHTNT--------------AIDTIHRIVDIFPLNQQEQV 265 (372)
T ss_dssp HHHHTTS-CCSEEEESCCCSHHHHHHHHHHH-TTTCEEEECCCCCS--------------HHHHHHHHHHTSCTTSHHHH
T ss_pred HHHHhhh-CcCEEEECCCCCHHHHHHHHHHH-hcCCEEEEEECcch--------------HHHHHHHHHHhcCcccchhH
Confidence 4443332 1110 001111111100 0000 00001 1112233322211
Q ss_pred ---CcccccccccCcccccCChhhhhHHHHHHHHhcCCcc--ceeecCCCCCCHH
Q 000971 308 ---LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA--LFMDEISTGLDSS 357 (1206)
Q Consensus 308 ---L~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~v--lllDEptsgLDs~ 357 (1206)
|....+++|+.+.++ +||| ||++++|+++.+|.+ +++||.|+.||+.
T Consensus 266 ~~~l~~~l~~vv~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 266 RIVLSFILQGIISQRLLP-KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHHHHSCCEEEEEEEEE-CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhEEEEEEeEe-cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 345567788876654 6888 789999999999999 9999999999865
No 230
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.08 E-value=1.7e-10 Score=137.58 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 979 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~----~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|+++.+.|.++|+|+|++ .+...+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999866688999999995 467889999998
Q ss_pred ec
Q 000971 1055 KR 1056 (1206)
Q Consensus 1055 ~~ 1056 (1206)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.07 E-value=1.5e-11 Score=141.23 Aligned_cols=121 Identities=19% Similarity=0.148 Sum_probs=79.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYN-GHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4556654 4799999999999999999999999998 76 8999987 755432 22457899999988899999998
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
+ + +.+.. . .+......++++.+|+.+..|.... ++|
T Consensus 281 ~---~--l~~l~-~---------------------------------~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS 316 (358)
T 2rcn_A 281 F---G--LWHLE-P---------------------------------EQITQGFVEFHDYLGHCKYRDCKHD-----ADP 316 (358)
T ss_dssp C---C--CCCCC-H---------------------------------HHHHHTSGGGGGGTTCSSSTTCCSS-----SCT
T ss_pred h---h--hcCCC-H---------------------------------HHHHHHHHHHHHHcCCchhcCCCcc-----cCC
Confidence 4 1 11100 0 0011123446677888776665543 699
Q ss_pred hhhhhHHHHHHHH
Q 000971 326 GGERKRVTTGEMM 338 (1206)
Q Consensus 326 GGqkkRvsia~~l 338 (1206)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999765
No 232
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.07 E-value=5.2e-11 Score=130.16 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=27.5
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999999999993
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.07 E-value=8.4e-13 Score=136.69 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=82.9
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEEcCccCC------ccccc-ceEE----EeecCCCCCCCCCHHHHH
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKK------QETFA-RISG----YCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~~Tv~e~l 935 (1206)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 58999999999999999999996542 233799999998732 12333 3455 778765543
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHH-cCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMEL-VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1007 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL-------~LDEP 1007 (1206)
++. ...+ ....++++++. +. -.|..++. +||||||||++|||+++.+|+|. .-|.|
T Consensus 74 -----i~~---~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 0111 11134556655 43 24666654 59999999999999999998762 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 000971 1008 TSG---LDARAAAIVMRTVRNTVDTG 1030 (1206)
Q Consensus 1008 Tsg---LD~~~~~~i~~~l~~~~~~g 1030 (1206)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23334456666665555554
No 234
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.06 E-value=5.3e-13 Score=152.71 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCeeCCCCCc------------------cceEEEe
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL--------DSSLKVSGRVTYNGHDMGEFVP------------------ERTAAYI 231 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l--------~~~~~~~G~I~~nG~~~~~~~~------------------~~~~~yv 231 (1206)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 344 8999999988764421 1234555
Q ss_pred ---cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC
Q 000971 232 ---SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1206)
Q Consensus 232 ---~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1206)
+|+..+++..+|.||..++... .....+.... .......++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~---------------------~~~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE---------------------VLCQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH---------------------HHHHHEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc---------------------cccCeEEECCEEEEEEH
Confidence 4655555666777766543110 0000000000 00000001112223333
Q ss_pred cccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000971 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1206)
.+..+... .+|||||||+..+++++..|+++ ||| ..+.+.|+++. .+ .+|+.++|...+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~-~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--AR-APVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SS-SCEEECCSSCCCG
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CC-CeEEEecccCCCH
Confidence 33333221 58999999998889998999887 998 56777777753 33 4444455544344
Q ss_pred HhhcC
Q 000971 389 YDLFD 393 (1206)
Q Consensus 389 ~~~fD 393 (1206)
..++|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 44443
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=1e-12 Score=151.35 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 926 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~ 926 (1206)
..+|+++|+.+++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3589999999999999999999999999999999986442 257888888665321 1345679999987766
Q ss_pred CCC------------CHHHHHHHh-----------------------------hhhcCCCCCCHHH-HHHHHHHHHHHcC
Q 000971 927 PFV------------TVYESLLYS-----------------------------AWLRLPPEVDSET-RKMFIEEVMELVE 964 (1206)
Q Consensus 927 ~~~------------Tv~e~l~~~-----------------------------a~lr~~~~~~~~~-~~~~v~~~l~~l~ 964 (1206)
+.. +++|.+... ..+..+...+..+ .+..+.+....+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 431 233332110 0000000000000 0000111111111
Q ss_pred CccccccccCCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 965 L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
+ +..|.. ....+|+|++|++..|++++. +|++++ ||++|......+++.|.++.
T Consensus 200 l-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 200 V-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp E-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred E-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 1 111210 113579999999999999987 688887 99999999999999998764
No 236
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.06 E-value=1.6e-11 Score=138.13 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=83.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~ 255 (1206)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999864 22 0 12345666999988865 89999987631100
Q ss_pred CCchhhHhHHHHHHhhhcCCCCC-CChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc------cccCcccccCChhh
Q 000971 256 VGSRYELLTELARRENEAGIKPD-PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT------MVGDEMIRGISGGE 328 (1206)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~p~-~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~LSGGq 328 (1206)
.-. ..+ .|+ -|.+ .....++.+.-. .+| .+. .+-..+||||
T Consensus 92 l~~-------------~~g-~p~a~d~~---------------~l~~~l~~l~~g--~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ-------------GRG-LPGTHDMK---------------LLQEVLNTIFNN--NEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS-------------SSC-STTSBCHH---------------HHHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh-------------hcc-CcchhHHH---------------HHHHHHHHhhcc--CccccCcceeec-cCccccCCcc
Confidence 000 000 011 1111 112233444221 111 122 2335799999
Q ss_pred hhHHHHH--HHHhcCCccceeecCCCCCCHHH
Q 000971 329 RKRVTTG--EMMVGPALALFMDEISTGLDSST 358 (1206)
Q Consensus 329 kkRvsia--~~l~~~~~vlllDEptsgLDs~t 358 (1206)
+||+.+| +++ +|+|+|+||++++||+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999987 555 899999999999999854
No 237
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=1.3e-10 Score=121.25 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=42.8
Q ss_pred HhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 000971 995 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042 (1206)
Q Consensus 995 L~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~ 1042 (1206)
.+.+|++|+||||++ ++|+.....+.+++....++|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 356999999999995 999999999999999887789999999998854
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=8.7e-12 Score=142.50 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=94.7
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccc--eEEEeecCCCCCCCCCHHHH
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++ .+.|++|...+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 478999999999999999999999996542 358899998875321 1122 24589999888899999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000971 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1206)
Q Consensus 935 l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~ 1014 (1206)
+.++..... +. + +++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 204 l~~~~~~~~--d~--------v--liDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV--------V--LIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN--- 255 (328)
T ss_dssp HHHHHHHTC--SE--------E--EEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT---
T ss_pred HHHHHhccc--hh--------h--HHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH---
Confidence 976532110 00 0 1111222211111 1223334889999888889999555 43
Q ss_pred HHHHHHHHHHHHH-hCCCEEEEEecCC
Q 000971 1015 AAAIVMRTVRNTV-DTGRTVVCTIHQP 1040 (1206)
Q Consensus 1015 ~~~~i~~~l~~~~-~~g~tvi~~~H~p 1040 (1206)
.+++.++.+. ..|.|+|++||..
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 4445555555 3489999999954
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.03 E-value=5.5e-11 Score=140.86 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=68.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------ccceEEEecCCCCCC
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------PERTAAYISQHDNHI 238 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~~~ 238 (1206)
-+++|+.+++|++++|+||||||||||+++|+|++.+. .|+|.++|.+..... .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 899999876653310 134689999998888
Q ss_pred CCCCHHHHHHHHh
Q 000971 239 GEMTVRETLAFSA 251 (1206)
Q Consensus 239 ~~lTV~Etl~f~~ 251 (1206)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999864
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.02 E-value=3.2e-11 Score=137.78 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=63.0
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---------cceEEEecCCCCCCCCCCHH
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---------ERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..++|++++|+||||||||||++.|+|.+.+. .|+|.++|.+...... +..+.|++|.....|.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999999876 8999999988754322 12356999998899999999
Q ss_pred HHHHHHh
Q 000971 245 ETLAFSA 251 (1206)
Q Consensus 245 Etl~f~~ 251 (1206)
|++.++.
T Consensus 202 e~l~~~~ 208 (328)
T 3e70_C 202 DAIQHAK 208 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 241
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.00 E-value=1.9e-11 Score=137.49 Aligned_cols=128 Identities=14% Similarity=0.087 Sum_probs=84.2
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhh----h
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA----W 940 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a----~ 940 (1206)
+++.++||.|+||||||||.+.|++.... .| . . .+.+.+|+|++.+++ -++++++.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 57889999999999999999999985532 11 0 0 234556699998875 47888987752 1
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCc--cc--cccccCCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCC
Q 000971 941 LR---LPPEVDSETRKMFIEEVMELVELK--PL--IQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 941 lr---~~~~~~~~~~~~~v~~~l~~l~L~--~~--~~~~~g~~~~~~LSgGqrqrl~ia--~aL~~~P~iL~LDEPTsgL 1011 (1206)
+. .|...+. ....+.++.+... .. ....+.. ....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 1222222 2345566655432 00 0011110 1246999999999997 555 99999999999999
Q ss_pred CHHH
Q 000971 1012 DARA 1015 (1206)
Q Consensus 1012 D~~~ 1015 (1206)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9853
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.99 E-value=2.6e-10 Score=133.65 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=90.0
Q ss_pred eecc-eeeeeCCeEEEEEccCCCcHHHHHhhh--cCCCC---CCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000971 857 LNGL-SGAFRPGVLTALMGVSGAGKTTLMDVL--SGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 857 L~~v-s~~i~~G~~~al~G~sGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 930 (1206)
|+.+ .+-|++|++++|+||||||||||+..| .+... ++.-.+.+++++.....
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~--------------------- 225 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR--------------------- 225 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------
Confidence 4443 368999999999999999999999954 44332 11123567777653210
Q ss_pred HHHHHH-HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeC
Q 000971 931 VYESLL-YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDE 1006 (1206)
Q Consensus 931 v~e~l~-~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg-Gqrqrl~ia~aL~--~~P~iL~LDE 1006 (1206)
. +.+. ....+. ... +++++.+-+ . ...+. .+.+.+..+.+++ .+|++|++||
T Consensus 226 ~-~rl~~~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 226 P-VRLVSIAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp H-HHHHHHHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred H-HHHHHHHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 0 0010 000010 111 112221111 0 01222 2334444444443 4699999999
Q ss_pred CCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHHhcCeEEEEe
Q 000971 1007 PTSGLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPG------------------IDIFDAFDELFLMK 1055 (1206)
Q Consensus 1007 PTsgLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~p~------------------~~i~~~~d~v~ll~ 1055 (1206)
||+.+|.... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 9999996433 5678888888765 999999999821 12456789999998
Q ss_pred cC
Q 000971 1056 RG 1057 (1206)
Q Consensus 1056 ~g 1057 (1206)
++
T Consensus 362 ~~ 363 (400)
T 3lda_A 362 KG 363 (400)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 243
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=1.3e-11 Score=145.27 Aligned_cols=170 Identities=12% Similarity=0.119 Sum_probs=98.4
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHH
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl 247 (1206)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..... ..++++.+++ ...+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~--~~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSE--EERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSS--SCEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecC--cceEEEEecc
Confidence 379999999999999999999999999999999843 12333333222 2355555543 0111222221
Q ss_pred HH---HhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 248 AF---SARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
-+ +....+.... +.+. ...++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhHH------------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 0000010000 0000 00011223333332 2344579
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
|+|++||+.+|++|...|.++++ +++|.... ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99998776 55555555444334455554444444455555443
No 244
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.97 E-value=4.8e-12 Score=145.70 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=108.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (1206)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+..... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35799999999999999999999999999999999998876 899999998774321 23568999999877
Q ss_pred CCCC---------C---HHHHHHHHhhhc--------CCCchhhHhHHHHHHhhhcCC---CCCC-ChHHHHHHHhhhhh
Q 000971 238 IGEM---------T---VRETLAFSARCQ--------GVGSRYELLTELARRENEAGI---KPDP-DIDVYMKAIATEGQ 293 (1206)
Q Consensus 238 ~~~l---------T---V~Etl~f~~~~~--------~~~~~~~~~~~~~~~~~~~~i---~p~~-d~~~~~~~~~~~~~ 293 (1206)
++.. | ++|.+.. .... .++-+.. +. ..+..++. .-++ ..+. .+.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~-~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~-~~~------ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLL-CEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDE-LQG------ 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHH-HhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCccc-HHH------
Confidence 7542 2 2333311 0000 0111000 00 00011110 0000 0000 000
Q ss_pred hHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHH
Q 000971 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLK 367 (1206)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~------~~~vlllDEptsgLDs~t~~~i~~~L~ 367 (1206)
.......+...+.+ +..|.. ....+|+|+++++..+.+++. .|++++ +|++|......+++.|.
T Consensus 187 -i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 187 -IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred -HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 00001111222333 222211 123589999999999998887 577776 99999999999999887
Q ss_pred HHH
Q 000971 368 QHV 370 (1206)
Q Consensus 368 ~~~ 370 (1206)
+..
T Consensus 257 ~~~ 259 (337)
T 2qm8_A 257 DHR 259 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.96 E-value=2.6e-11 Score=137.52 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=81.4
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCH
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTV 931 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~~Tv 931 (1206)
.+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... .+. +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 6653 4799999 88765432 112 2479999998653 67899
Q ss_pred HHHH--HHhh---h-hcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 000971 932 YESL--LYSA---W-LRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVE 994 (1206)
Q Consensus 932 ~e~l--~~~a---~-lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~a 994 (1206)
|++ .|.. . .+...-....+....++++++.++|.+ ..+..+ ..|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4531 0 111110111222345899999999986 666664 4699989999999874
No 246
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.95 E-value=7.6e-13 Score=160.01 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=103.0
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
.+++++++.+++|+.++|+|||||||||||++|+|...+. .|.|.++|.+.-...-...++++.|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 4789999999999999999999999999999999977643 68899988652211112345566554432223455544
Q ss_pred HHHhhhhcCCC------CCCHHHHHH------------------HHHHHHHHcCCcc--ccccccC-C----CCCCCCCH
Q 000971 935 LLYSAWLRLPP------EVDSETRKM------------------FIEEVMELVELKP--LIQSLVG-L----PGVSGLST 983 (1206)
Q Consensus 935 l~~~a~lr~~~------~~~~~~~~~------------------~v~~~l~~l~L~~--~~~~~~g-~----~~~~~LSg 983 (1206)
+... +|+.. .+...+... .+.++++.+...+ ....++. . .....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4321 22111 111111110 1233333333211 0000000 0 00134799
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHHhc
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPGIDIFDAF 1048 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~p~~~i~~~~ 1048 (1206)
||+||+++|. + | |+|||+.....+++.|.++...|+|+++ ++|+.+ ++...+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999877651 2 7 9999998776666666665555778775 778754 344433
No 247
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.93 E-value=2.3e-09 Score=125.27 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=73.0
Q ss_pred HHHHHHHcCCccc-------ccccccC----cccccCChhhhhHH------HHHHHHhcC-CccceeecCCCCCCHHHHH
Q 000971 299 TDYYLKVLGLEVC-------ADTMVGD----EMIRGISGGERKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTF 360 (1206)
Q Consensus 299 ~~~~l~~lgL~~~-------~dt~vg~----~~~~~LSGGqkkRv------sia~~l~~~-~~vlllDEptsgLDs~t~~ 360 (1206)
++..++.+++.+. .+..+.+ ..+..+|||||||| ++|++++.+ |++++|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 4556777777651 1222222 34568999999998 557888999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 361 ~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.+.+.|+++. .++++++ ++|.. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 9999998753 2345554 55554 4788999999997
No 248
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.93 E-value=4.6e-12 Score=153.20 Aligned_cols=85 Identities=21% Similarity=0.163 Sum_probs=65.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.+--.......+.++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34788999999999999999999999999999999999887 899999986522222234567777765433456788
Q ss_pred HHHHHHhh
Q 000971 245 ETLAFSAR 252 (1206)
Q Consensus 245 Etl~f~~~ 252 (1206)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 87765554
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.93 E-value=3.2e-11 Score=142.08 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=90.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEe------
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYI------ 231 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv------ 231 (1206)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.++|.
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478887 4 4899999999999999999999999999876 8999999887742211 1223443
Q ss_pred ---cCCCCC--CCC----CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH
Q 000971 232 ---SQHDNH--IGE----MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1206)
Q Consensus 232 ---~Q~d~~--~~~----lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1206)
.|++.. +++ .|+.+++.++..-+.+-.. + ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------l----------h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------L----------HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------E----------CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------c----------chhh--------------HHHHHH-H
Confidence 377654 354 5888888775321100000 0 0000 001122 3
Q ss_pred HHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccce
Q 000971 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346 (1206)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vll 346 (1206)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667876532 234699999999 9999999999865
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=2.2e-10 Score=129.85 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=78.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCeeCCCCCcc---ceEEEecCCCCCC-----CCCCHH
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHDMGEFVPE---RTAAYISQHDNHI-----GEMTVR 244 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---nG~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 244 (1206)
.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+..... +.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88876 999999 89877643221 2479999987543 78999
Q ss_pred HHH--HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-cccccccCccc
Q 000971 245 ETL--AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTMVGDEMI 321 (1206)
Q Consensus 245 Etl--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (1206)
|++ .|+. .. + .. |+. . +..+.. +....++.+++.+||.+ .++.. .
T Consensus 238 e~l~~~f~~-~~------~-~~--c~~-~--~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~~-----~ 285 (302)
T 2yv5_A 238 REVRNYFRE-FL------R-YQ--CKY-P--DCTHTN--------------EPGCAVKEAVKNGEISCERYKSY-----L 285 (302)
T ss_dssp GGGGGGCGG-GH------H-HH--HHS-T--TCCSSS--------------CTTCHHHHHHHTTSSCHHHHHHH-----H
T ss_pred HHHHHHHHH-HH------H-cc--CCC-C--CCCCCC--------------CCCCHHHHHHHcCCCCHHHHHHH-----H
Confidence 888 4431 00 0 00 110 0 000000 01123667888999975 55544 3
Q ss_pred ccCChhhhhHHHHHH
Q 000971 322 RGISGGERKRVTTGE 336 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~ 336 (1206)
+.|||.++|++.|||
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 469998888898886
No 251
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=7.4e-10 Score=128.38 Aligned_cols=164 Identities=13% Similarity=0.009 Sum_probs=84.9
Q ss_pred EEEEccCCCcHHHHHhhhcC-CCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 000971 870 TALMGVSGAGKTTLMDVLSG-RKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~ 947 (1206)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+.... .....+++++|.+.+..... + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 89999999999999999998 3332 257888888654321 12345677877654311100 0 0 000
Q ss_pred CHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
... .+.+.++.+......+... .||| +..+|+++|+|||++ ||..+...+.+++.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1333333332111111110 2465 788999999999999 99999999999998753
Q ss_pred hCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCcchhHHHHHHHh
Q 000971 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEA 1079 (1206)
Q Consensus 1028 ~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~~~~~~yf~~ 1079 (1206)
.++++|+++|+|+.-.-..-+| ...+.+.++.. .++..+...
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHHH
Confidence 4789999999987311122222 24566666642 345555543
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.89 E-value=4e-12 Score=149.77 Aligned_cols=133 Identities=15% Similarity=0.031 Sum_probs=89.9
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEee-------
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------- 920 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------- 920 (1206)
.+|+++ + .++|++++|+|||||||||||++|+|...+. .|.|.+.|.++.. ....+.+|+.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 478888 4 4899999999999999999999999965432 5888888876531 11223345544
Q ss_pred --cCCCC--CCC----CCHHHHHHHhhhhcC----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 921 --QNDIH--SPF----VTVYESLLYSAWLRL----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 921 --q~~~~--~~~----~Tv~e~l~~~a~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
|++.. .+. .|+.+++.++..-.. ....+.. . +.+.|..+++.+.. + ...|||||+||
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR 301 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---G-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR 301 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---H-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---H-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH
Confidence 77654 233 589999877532110 0011111 1 23356778887653 2 24799999999
Q ss_pred HHHHHHHhhCCcEEEE
Q 000971 989 LTIAVELVANPSIIFM 1004 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~L 1004 (1206)
||++|+.+|+++.-
T Consensus 302 --LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 --LVRTLCPDCKEPYE 315 (418)
T ss_dssp --EEEEECTTTCEEEE
T ss_pred --hhhhhcCCCCccCC
Confidence 99999999998763
No 253
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=5.5e-12 Score=146.96 Aligned_cols=169 Identities=16% Similarity=0.188 Sum_probs=115.4
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcC------------CCCCCCceeEEEECCeeCCC----CCccceE---EEecC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK------------LDSSLKVSGRVTYNGHDMGE----FVPERTA---AYISQ 233 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~------------l~~~~~~~G~I~~nG~~~~~----~~~~~~~---~yv~Q 233 (1206)
+.+++|..++|+|+||||||||+++|+|. .+|+ .|.|.++|..+.. +.+++.+ .++.+
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEe
Confidence 36688999999999999999999999993 2343 8999998843211 1223333 46778
Q ss_pred CCCCCCCCCHHHHH--HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000971 234 HDNHIGEMTVRETL--AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1206)
.+-+...++..|++ .|-+.++.. +.++..+...
T Consensus 92 ~pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~-- 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF-- 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC--
T ss_pred ccccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc--
Confidence 88777777776655 332222110 0011111111
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEEecCchhH
Q 000971 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLKQH-VHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 312 ~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~--~vlllDEptsgLDs~t~~~i~~~L~~~-~~~~~~t~vi~i~q~~~~~ 388 (1206)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.| ++ .|...++
T Consensus 127 -----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~ 185 (392)
T 1ni3_A 127 -----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEE 185 (392)
T ss_dssp -----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHH
T ss_pred -----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHH
Confidence 122233467653 88 999999999999999999988888876 43 3333 33 6778889
Q ss_pred HhhcCeEE-EEcCC-eEEEecChH
Q 000971 389 YDLFDDII-LLSDG-QIVYQGPRE 410 (1206)
Q Consensus 389 ~~~fD~vi-lL~~G-~iv~~G~~~ 410 (1206)
.++||+|. +|.+| ++++.|+.+
T Consensus 186 ~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 186 QAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHHhccCCceeecCCCC
Confidence 99999999 99999 988877643
No 254
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=9.9e-10 Score=114.58 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 339 VGPALALFMDEIST-GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 339 ~~~~~vlllDEpts-gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34889999999985 9999998888888876543 456777766655443
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.84 E-value=1.1e-11 Score=138.82 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=94.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1206)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998763 789999977643321 13456666653 34555
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+++.|++.+....++ .... + .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~--------------------------~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRET--------------------------G------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCcc--------------------------h------HHHHHH-----HHH
Confidence 566666554211000 0000 0 000111 122
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEpts------------gLDs~t~~~i~~~L 366 (1206)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3369999999999999999999975 98864 23677777776644
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.84 E-value=1.7e-11 Score=131.37 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=79.6
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|...... ..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhcccccCC
Confidence 579999999999999999999999996542 22345666665443211 111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1021 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia-~aL~~~P~iL~LDEPTsgLD~~~~~~i~~ 1021 (1206)
.+...+... ..+.+..+...+..+...... ..++|+||+||+++| +.++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 011111111 222333222121122222221 235899999999987 77788888777888741 1
Q ss_pred HHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 1022 TVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 1022 ~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
.++.. --.+|++.+.....+.....|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 11222 236777777765434455555
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.83 E-value=7e-11 Score=126.56 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=71.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhc
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQ 254 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~ 254 (1206)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 4789999999999999999999999998752 2 135666666554432 2222211000 00
Q ss_pred CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHH
Q 000971 255 GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334 (1206)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi 334 (1206)
+.... .|.+. ....+..+......++.+++... +.||||+||+++
T Consensus 78 ~~~~~-------------------~~~~~---------------~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPET-------------------FDFEG---------------FQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGP 122 (208)
T ss_dssp TSGGG-------------------BCHHH---------------HHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECT
T ss_pred CCCch-------------------hhHHH---------------HHHHHHHHhcCCceecccCCccc-cCCCCCceEEcC
Confidence 00000 01000 01111111111222344555444 589999999999
Q ss_pred H-HHHhcCCccceeecCC
Q 000971 335 G-EMMVGPALALFMDEIS 351 (1206)
Q Consensus 335 a-~~l~~~~~vlllDEpt 351 (1206)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 8888888888899984
No 258
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=5.7e-12 Score=146.81 Aligned_cols=172 Identities=10% Similarity=0.085 Sum_probs=116.2
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC----------CCCeeEEEEEEcCccCCc----ccccce---EEEeecCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK----------TGGYITGNITISGYPKKQ----ETFARI---SGYCEQNDI 924 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~q~~~ 924 (1206)
+.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 367899999999999999999999999932 112457999998843211 001122 246777777
Q ss_pred CCCCCCHHHHH--HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC--c
Q 000971 925 HSPFVTVYESL--LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP--S 1000 (1206)
Q Consensus 925 ~~~~~Tv~e~l--~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P--~ 1000 (1206)
+.+..+..|.+ .|-+.++.. +.++..++..+ + ..+..++++. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchh
Confidence 77777766655 443333311 11111111111 1 1122345442 89 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHHhcCeEE-EEecCc-EEEEEcCCCc
Q 000971 1001 IIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPGIDIFDAFDELF-LMKRGG-QEIYVGPLGR 1068 (1206)
Q Consensus 1001 iL~LDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~p~~~i~~~~d~v~-ll~~gg-~~~~~g~~~~ 1068 (1206)
++++|||+.++|+......++.++.+ .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..+
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 99999999999999999999999888 66688865 99876 6788999999 8875 6 7787787653
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.81 E-value=1.3e-12 Score=138.96 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 334 ia~-~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 455 7889999999999999999999999999887765421 1122 11 67899988764
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.79 E-value=2.3e-09 Score=125.63 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=42.7
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCc-------------------hhH
Q 000971 340 GPALALFMDEISTGLDSSTT------------FQIVNCLKQHVHINSGTAVISLLQPA-------------------PET 388 (1206)
Q Consensus 340 ~~~~vlllDEptsgLDs~t~------------~~i~~~L~~~~~~~~~t~vi~i~q~~-------------------~~~ 388 (1206)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 47999999999999997543 56778888888766656555 44541 224
Q ss_pred HhhcCeEEEEcCCe
Q 000971 389 YDLFDDIILLSDGQ 402 (1206)
Q Consensus 389 ~~~fD~vilL~~G~ 402 (1206)
.+.+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999887653
No 261
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.76 E-value=1.2e-09 Score=119.66 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=46.8
Q ss_pred HHHHHHHh--hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCEEEEEecCCchH-------HHHhcCeEEEEec
Q 000971 989 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPGID-------IFDAFDELFLMKR 1056 (1206)
Q Consensus 989 l~ia~aL~--~~P~iL~LDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~p~~~-------i~~~~d~v~ll~~ 1056 (1206)
+..+..++ .+|+++++|+|++.+ |......++..|.++ .+.|+|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 554444555555554 45699999999986521 4567899999975
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.75 E-value=1.7e-12 Score=138.20 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 991 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 991 ia~-aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+++ +++.+|++++|||+|+++|..+...|.+.|.++... +...|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888899999999999999999988876542 2335632 4689988775
No 263
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=1e-09 Score=123.72 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=67.0
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCcc-cccce-EEEeecCCCCCC----CCCHH
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTVY 932 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~~Tv~ 932 (1206)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5678999999999999999999999999765 34789988 77654321 12222 699999987755 6889
Q ss_pred HHHH--Hhhh------hcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 933 ESLL--YSAW------LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 933 e~l~--~~a~------lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
|++. |... .+...-....+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3211 111110011122345899999999986433221 246677766
No 264
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.73 E-value=3.3e-10 Score=128.96 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=59.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEE---CCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHH
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTY---NGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~ 250 (1206)
++|++++|+||||||||||+++|+|.+. ++ +|+|.+ +|..... ...+.++|+ |...+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999887 66 899999 8866421 112456788 777778899999999886
Q ss_pred hhh
Q 000971 251 ARC 253 (1206)
Q Consensus 251 ~~~ 253 (1206)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 265
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=8.6e-09 Score=104.16 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.7
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355665 8999999999999999999999998764
No 266
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.70 E-value=7.4e-10 Score=125.56 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=51.5
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCeeCCCCCcc---ceEEEecCCCC-----------
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHDMGEFVPE---RTAAYISQHDN----------- 236 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---nG~~~~~~~~~---~~~~yv~Q~d~----------- 236 (1206)
.+.+|++++|+|||||||||||++|+|...++ +|+|.+ +|.++...... +.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999999987 999999 89877643321 35789999864
Q ss_pred -----CCCCCCHHHHHHHH
Q 000971 237 -----HIGEMTVRETLAFS 250 (1206)
Q Consensus 237 -----~~~~lTV~Etl~f~ 250 (1206)
+||++|| ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5889999 888875
No 267
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.69 E-value=5.4e-10 Score=126.67 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=65.7
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCccc--c-cceEEEeecCCC------------
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI------------ 924 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------ 924 (1206)
.+.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4557999999999999999999999997764 4799999 887654211 1 134799999874
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 000971 925 ----HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLV 973 (1206)
Q Consensus 925 ----~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~ 973 (1206)
++|.+|+ ||+.|... .. ..+....+.++|+.++|. +..+..+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4788888 88887531 11 112234589999999995 6666653
No 268
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.68 E-value=1.9e-08 Score=120.77 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=108.8
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-EEEEcCccCCcccc-cceEEEeecCCCCCCCCCHH
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETF-ARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~-~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
..|+++++-+++|+++.|.|++|+|||||+..+++..... .| .+.+.+........ .|..+... ....
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 3688899899999999999999999999999888642210 12 23332222111110 01000000 0000
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1010 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~LDEPTsg 1010 (1206)
+. ++. .....++ ...+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 01 111 1222222 33455666666544432211 2368999986 5667776 68999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHhC-CCEEEEEec---------C--Cch-------HHHHhcCeEEEEecCc
Q 000971 1011 LD--------ARAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PGI-------DIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1011 LD--------~~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--p~~-------~i~~~~d~v~ll~~gg 1058 (1206)
.+ ......+.+.|+.++++ |++||+++| + |.. .+...+|.|++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 74 23446778888888755 999999999 2 531 3667899999998753
No 269
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.68 E-value=2.8e-10 Score=129.49 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=85.4
Q ss_pred EEeecceeee-------------------eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCcccc
Q 000971 855 VLLNGLSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQETF 912 (1206)
Q Consensus 855 ~vL~~vs~~i-------------------~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~ 912 (1206)
.++++|++.+ ++|+++||+||||||||||+++|+|.....+..|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788899888 89999999999999999999999995430012688988 88765432 2
Q ss_pred cceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH
Q 000971 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIA 992 (1206)
Q Consensus 913 ~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia 992 (1206)
++.+|++ |...+++.+|+.+++.+...++.... .+ ..+..+. +.+ +|+..+
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------~i-~~P~~~~----------~~~--~~~~~~ 178 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------NV-TAPVYSH----------LIY--DVIPDG 178 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---------------CE-EECCEET----------TTT--EECTTC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---------------ce-ecccccc----------ccc--Cccccc
Confidence 3446788 77777788999999987655542211 00 0011111 111 222222
Q ss_pred HHHhhCCcEEEEeCCCCCCCH
Q 000971 993 VELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 993 ~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
.+.+.+|+++|+|.|....+.
T Consensus 179 ~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 179 DKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEEEC-CCEEEEECTTTTCCG
T ss_pred ceecCCCCEEEECchhhCCCc
Confidence 244567899999999988773
No 270
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.5e-08 Score=117.28 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 000971 181 TLLLGPPASGKTTLLLALAG-KLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG-~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~ 258 (1206)
++|.||||+|||||+++|+| .+.+. .|.|.++|.+...... ...++|++|.+.+..... + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 56665 7999999876643221 345778888653311100 0 00000
Q ss_pred hhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHH
Q 000971 259 RYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338 (1206)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l 338 (1206)
+ . .....++.+.+..++.. . . .+|| +
T Consensus 106 ~-~--------------------------------~~~~~i~~~~~~~~~~~----~-----~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-I--------------------------------VIQELLKEVAQMEQVDF----Q-----D-SKDG-----------L 131 (354)
T ss_dssp H-H--------------------------------HHHHHHHHHTTTTC-------------------------------
T ss_pred h-H--------------------------------HHHHHHHHHHHhccccc----c-----c-cccc-----------c
Confidence 0 0 00001111111111111 0 0 3566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 339 ~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
.++|+|+++|||++ ||..+...+.+.|.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999988753 3455555555543
No 271
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.64 E-value=1.7e-10 Score=132.94 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=93.9
Q ss_pred ceEeeceeeeEeCC-------eEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCeeCCCC---CccceEEEecC
Q 000971 165 LTILKDVSGIIKPG-------RMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEF---VPERTAAYISQ 233 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G-------~~~~ilGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~nG~~~~~~---~~~~~~~yv~Q 233 (1206)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34677788888776 8899999999999999999999874321 1356665555443211 11346899999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000971 234 HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1206)
.+.+.+ ++.|+|.......+.. ... .. + .....++..+..++|.. +.
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~----i~~--~~----------~--------------~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQID----IMI--GK----------G--------------PSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhcccc----eee--cc----------C--------------cccccccccCCCeEEEE-ec
Confidence 876654 7888885433211100 000 00 0 00011223344455544 45
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~ 372 (1206)
+.++ .||+|+|+|+.++ .+||+.+..++.+.|++.+..
T Consensus 158 ~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 158 TRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp SCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred CCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 5443 6999999998544 678888888888888877654
No 272
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.64 E-value=2.4e-11 Score=135.96 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=86.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 929 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~~ 929 (1206)
..+++++++.+++| ++|+||||+|||||+++|+|.... |.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 35899999999999 999999999999999999996542 6889999765321 1233466777764 345666
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs 1009 (1206)
++.|++.+.+..+. .. ... .+....+.++ ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 00 000 1223334432 369999999999999999999975 88753
No 273
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.61 E-value=2.7e-10 Score=131.20 Aligned_cols=150 Identities=16% Similarity=0.075 Sum_probs=92.5
Q ss_pred eEEeecceeeeeCC-------eEEEEEccCCCcHHHHHhhhcCCCCC--CeeEEEEEEcCccCCc---ccccceEEEeec
Q 000971 854 LVLLNGLSGAFRPG-------VLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQ 921 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G-------~~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~q 921 (1206)
..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35788999999877 89999999999999999999985421 1334555444433211 111346889998
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCC--CHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000971 922 NDIHSPFVTVYESLLYSAWLRLPPEV--DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999 (1206)
Q Consensus 922 ~~~~~~~~Tv~e~l~~~a~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P 999 (1206)
.+.+.+ ++.|++....... ..+. ........+.+.++.++|.. +.+. ...||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 877665 7888875332111 1010 01111223444555555544 3333 246999999998654
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 1000 ~iL~LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888899999988764
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.53 E-value=3.2e-08 Score=111.89 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=74.5
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhh
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a 939 (1206)
+++..++|++++|+|||||||||++..|++.... ..|+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHH------
Confidence 4566789999999999999999999999985431 124566554332100 0011
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000971 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1016 (1206)
Q Consensus 940 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl---~ia~aL~~~P~iL~LDEPTsgLD~~~~ 1016 (1206)
.+..+.+.+++.. ....|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223444555542 124688999999 89999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 000971 1017 AIVMRTVRNT 1026 (1206)
Q Consensus 1017 ~~i~~~l~~~ 1026 (1206)
..+++.|+++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.53 E-value=2.6e-07 Score=104.17 Aligned_cols=118 Identities=19% Similarity=0.107 Sum_probs=80.0
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY 937 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 937 (1206)
+++++. +|++++|+|+||+||||++..|++.... ..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678888 9999999999999999999999985431 1356777665432110 00 000
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1016 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP-TsgLD~~~~ 1016 (1206)
..+.+..++.-+.. + ...+-.+.+|..|+.+...+++++|+||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 11223345443211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 000971 1017 AIVMRTVRNT 1026 (1206)
Q Consensus 1017 ~~i~~~l~~~ 1026 (1206)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8877776654
No 276
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.53 E-value=1.5e-08 Score=120.76 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=48.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~ 221 (1206)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4579999999999 999999999999999999999999987 9999999987654
No 277
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.52 E-value=1.8e-07 Score=107.94 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch-----
Q 000971 987 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPGI----- 1042 (1206)
Q Consensus 987 qrl~ia~aL~~~--P~iL~LDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~p~~----- 1042 (1206)
+-+.++++++.+ |++|++|||++.+ |+ ..++.+.+.++++ .+.|+|||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223444555554 3459999999996431
Q ss_pred ----------HHHHhcCeEEEEecCcEEEEEcC
Q 000971 1043 ----------DIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 1043 ----------~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467888888876 44444443
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.48 E-value=1e-07 Score=107.70 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=76.8
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHH
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~ 250 (1206)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45567899999999999999999999999998764 567776654321 00 000111
Q ss_pred hhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhh
Q 000971 251 ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330 (1206)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkk 330 (1206)
..+++.+|++. +...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233455542 1246899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 000971 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQH 369 (1206)
Q Consensus 331 Rv---sia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~ 369 (1206)
++ ++++++..+++++++|+|.. ......+++.|+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 33444555555544
No 279
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.45 E-value=7e-09 Score=128.91 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=98.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC---------
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD--------- 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--------- 235 (1206)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999999875 2488999887766543 3588888752
Q ss_pred -------------CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH
Q 000971 236 -------------NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1206)
Q Consensus 236 -------------~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1206)
..++.+++.+|+.... |. ..+.+-+.. . ....
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~--------------------~~~~~~v~~-------~-------~~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CG--------------------RTKAPFIDA-------T-------GAHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TT--------------------CSSCCEEEC-------T-------TCCH
T ss_pred Hhhccchhhhhhcccccccccccceeecc-cc--------------------CCCCCEEEc-------C-------CCCH
Confidence 1111111111111000 00 000000000 0 0001
Q ss_pred HHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
.+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12223211111 1123699999999999999999999999999998 898877777776653
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.45 E-value=5e-07 Score=98.50 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=42.1
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh--------HHhhcCeEEEEcC
Q 000971 340 GPALALFMDEISTGL--DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (1206)
Q Consensus 340 ~~~~vlllDEptsgL--Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~--------~~~~fD~vilL~~ 400 (1206)
.+|+++++|++++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 478999999999988 6555566777777776655555555 5555443 4677899999864
No 281
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=6.1e-08 Score=109.30 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=44.6
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCeeCCCCCcc-ce-EEEecCCCCCCC----CCCH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHDMGEFVPE-RT-AAYISQHDNHIG----EMTV 243 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---nG~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 243 (1206)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+..... +. .+|+.|++.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 456689999999999999999999999998876 899998 88766543221 22 689999987655 6899
Q ss_pred HHHHH
Q 000971 244 RETLA 248 (1206)
Q Consensus 244 ~Etl~ 248 (1206)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9983
No 282
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.42 E-value=2.9e-07 Score=103.73 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=88.3
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 944 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~ 944 (1206)
++|++++|+||||+||||++..|++..... .| +.+.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999854310 12 12455555442 234555554321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 000971 945 PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024 (1206)
Q Consensus 945 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~ 1024 (1206)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222111 01122 22344444 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCCchHHHHhcCeEEEEecCcEEEEEcCC-CcchhHHHHHHHhC
Q 000971 1025 NTV---DTGRTVVC-TIHQPGIDIFDAFDELFLMKRGGQEIYVGPL-GRHSCQLISYFEAI 1080 (1206)
Q Consensus 1025 ~~~---~~g~tvi~-~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~-~~~~~~~~~yf~~~ 1080 (1206)
-+. ..+.++|+ ++|.+. ++.+.++++..+..+| ++..--- ......+++.....
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVltk~D~~~~~g~~~~~~~~~ 265 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFTKIDETTSLGSVFNILAES 265 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEECTTTCSCCHHHHHHHHTC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEeCCCcccchhHHHHHHHHH
Confidence 322 12334444 378764 5777777766566544 4443211 11223455555544
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=1.3e-08 Score=108.04 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=47.7
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---ccceEEEecCCCCCCCCCCHHHHHH
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999864 2445554433221 1245789999876666666655543
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.42 E-value=3.3e-08 Score=103.97 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~ 1026 (1206)
+.+.+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888653
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.41 E-value=2.7e-07 Score=104.06 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~ 255 (1206)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998643 34 24566666542 3355555543221
Q ss_pred CCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHH
Q 000971 256 VGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335 (1206)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia 335 (1206)
.+|++.. + ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122110 0 011 222345555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEE-EecCchhHHhhcCeEEEEcCCeEEEe
Q 000971 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI--NSGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 406 (1206)
Q Consensus 336 ~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~--~~~t~vi~-i~q~~~~~~~~fD~vilL~~G~iv~~ 406 (1206)
+ +.+++++++| |.|+|+.....+.+.. ++... ...++++. ..|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987654444333 22211 11222222 35555667777776656666777653
No 286
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.39 E-value=4.1e-07 Score=109.07 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=106.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 456799999999999999999999999999999999875421 12 134555532 343
Q ss_pred HHHHHHH-hhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 244 RETLAFS-ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~-~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
.+...-. +...+... . .+ . .+...+.+ .. .+...+..++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~--~---~l----~-~g~l~~~~--------------~~-~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA--Q---NL----R-TGKLTPED--------------WG-KLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH--H---HH----H-TSCCCHHH--------------HH-HHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCCH--H---HH----h-cCCCCHHH--------------HH-HHHHHHHHHhcCCEE---EEC--CC
Confidence 3322210 00001100 0 00 0 00000000 00 112223333322211 111 23
Q ss_pred cCChhhhhHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 000971 323 GISGGERKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLKQHVHINSGTAVISLLQ--------- 383 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~--~~~~vlllDEptsgLDs--------~t~~~i~~~L~~~~~~~~~t~vi~i~q--------- 383 (1206)
++|++|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++| .++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi-~~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVI-ALSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEE-EEECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE-EEecCCcccccCC
Confidence 68999886 5566665 67999999999998743 2336677888888876655544 4666
Q ss_pred ---Cc-------hhHHhhcCeEEEEcCCeE
Q 000971 384 ---PA-------PETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 384 ---~~-------~~~~~~fD~vilL~~G~i 403 (1206)
|. ..+...+|.|++|+.++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22 146778999999987653
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.37 E-value=1.2e-09 Score=122.27 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=55.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1206)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...|.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4688999999999 99999999999999999999875 6889998865432211 12345566653 245556
Q ss_pred CHHHHHH
Q 000971 242 TVRETLA 248 (1206)
Q Consensus 242 TV~Etl~ 248 (1206)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666664
No 288
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.36 E-value=8e-09 Score=123.87 Aligned_cols=164 Identities=10% Similarity=0.087 Sum_probs=91.3
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcC----CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC-CC-CCHHH
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSG----RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-PF-VTVYE 933 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~-~Tv~e 933 (1206)
+++.+..+..+.|.|+|||||||+++.|.. ..++ |++.+.+.+.+...+.. | ..-+.+. +- -.+.+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh---h-ccCCcccceeecCHHH
Confidence 556777899999999999999999999865 2222 33443333322111111 0 0001110 00 11222
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EE
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-II 1002 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl----------~ia~aL~~~P~-iL 1002 (1206)
....-.++ .++.+++ .+.++..|+.++.+..-.. ...+|+||+|+. .+|+++...|. ++
T Consensus 232 a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 232 AANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 22111111 1233333 3678888887654321000 013677776642 35666778898 68
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCch
Q 000971 1003 FMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPGI 1042 (1206)
Q Consensus 1003 ~LDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~p~~ 1042 (1206)
++||++.-+|.. ...+.+.|.++++ .|.++|+++|+|+.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 999999988843 3445555555543 37799999999983
No 289
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.35 E-value=1.2e-08 Score=126.82 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=98.1
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCC--------
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-------- 924 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-------- 924 (1206)
...+++++++.+++|+.+.|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 346899999999999999999999999999999999965432 23788888876543 3445788876421
Q ss_pred --------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHH
Q 000971 925 --------------HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLT 990 (1206)
Q Consensus 925 --------------~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ 990 (1206)
.+..+++.+|+.....-..+...-.. . ....-+.+|..+..... ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 11112222222110000000000000 0 00011112211111111 1469999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000971 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025 (1206)
Q Consensus 991 ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~ 1025 (1206)
.++...+++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888888864
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.34 E-value=1.9e-09 Score=119.01 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=54.6
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1206)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+.+++|.. .+.|.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999875 6889888865432111 12344555542 244555
Q ss_pred CHHHHHH
Q 000971 242 TVRETLA 248 (1206)
Q Consensus 242 TV~Etl~ 248 (1206)
++.|++.
T Consensus 112 ~~~Deid 118 (254)
T 1ixz_A 112 VFIDEID 118 (254)
T ss_dssp EEEETHH
T ss_pred EEehhhh
Confidence 6666663
No 291
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.32 E-value=8.4e-08 Score=115.06 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=89.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC--CHHH
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM--TVRE 245 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG--~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1206)
.+++.+..+..++|.|++||||||+|++|.. ....+ .|+|.+.+.+.+.... +.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 3677788899999999999999999999875 23322 4667666655432110 100112222 2223
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc--cccCccccc
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT--MVGDEMIRG 323 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt--~vg~~~~~~ 323 (1206)
+...+.+.-. ....+ .+.+ ..+++..|+.+..+. .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~E-----------------------------merR-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNE-----------------------------MERR-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHcCCccHHHHHHHHH----HH
Confidence 3322211100 00111 1112 245666776654321 111 24
Q ss_pred CChhhhhHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecCch
Q 000971 324 ISGGERKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAP 386 (1206)
Q Consensus 324 LSGGqkkRv----------sia~~l~~~~~-vlllDEptsgLDs~t~~~i~~~L~~~~~~~~--~t~vi~i~q~~~ 386 (1206)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++++..+ +..++..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 799998863 24455667787 88999999988843 3445555555544322 344444555443
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.31 E-value=9.5e-10 Score=123.23 Aligned_cols=123 Identities=16% Similarity=0.199 Sum_probs=79.5
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 930 (1206)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5789999999999 99999999999999999998653 46788887543211 11223456677643 456677
Q ss_pred HHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 931 VYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+.|++......+... ....++....+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777774322111100 001122222233332 24789999999999999999976
No 293
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.29 E-value=1.7e-07 Score=98.52 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=36.0
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
|..-..+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4433445678999999999999999 999999999999988765
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.29 E-value=2.6e-08 Score=105.80 Aligned_cols=67 Identities=22% Similarity=0.137 Sum_probs=42.0
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
|+.+++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56778999999999999999999999999642 24444433211 112345678888755444444333
No 295
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.28 E-value=8.9e-08 Score=114.03 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=45.2
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
.+|++||+.|++ +++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 479999999999 99999999999999999999997653 3689999998653
No 296
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.28 E-value=1.5e-06 Score=97.91 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=78.6
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHH
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
+++++. +|++++|+|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHHH
Confidence 678888 99999999999999999999999998754 6788777644210 0 000 0000
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432210 00 122334
Q ss_pred hhHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 000971 329 RKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEp-tsgLDs~t~~~i~~~L~~ 368 (1206)
-+|.+++++...+++++++|+| +.|+|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688899888889999999999 999998877777766654
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.27 E-value=1.3e-09 Score=120.18 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=78.7
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 930 (1206)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4789999999999 99999999999999999998653 46788887543211 11223456666542 456677
Q ss_pred HHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 931 VYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 931 v~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+.|++..-...+.. .....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 77777322211110 00011222233333332 4789999999999999999986
No 298
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.25 E-value=7.3e-07 Score=102.83 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=27.0
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999988888654
No 299
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.20 E-value=1e-06 Score=101.32 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=29.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
|-+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999987654
No 300
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.19 E-value=1.9e-06 Score=103.08 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPG 1041 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~p~ 1041 (1206)
+++++|-.++.+....|.|||+||+ ++|.|......+.++|..+- ..+..||+++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677776667777776653 24788999999985
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.16 E-value=4.3e-07 Score=98.51 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=23.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHH-cCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALA-GKLDS 204 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~La-G~l~~ 204 (1206)
-+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 99753
No 302
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.12 E-value=7.9e-08 Score=103.79 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.0
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-----------cceEEEecCC
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-----------ERTAAYISQH 234 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-----------~~~~~yv~Q~ 234 (1206)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++....+ +..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999987 8999999987732211 2457888873
No 303
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.12 E-value=1.1e-06 Score=92.67 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
...|++|+.+|.++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999998888877643
No 304
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.03 E-value=2.1e-06 Score=98.77 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=29.5
Q ss_pred Eeecce--eeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 856 LLNGLS--GAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 856 vL~~vs--~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-|+.+- +-+.+|+++.|.||+|+|||||+..+++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 47999999999999999999999999864
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.03 E-value=1.3e-06 Score=94.82 Aligned_cols=38 Identities=32% Similarity=0.236 Sum_probs=22.9
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhc-CCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS-GRKT 892 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~-g~~~ 892 (1206)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999 8753
No 306
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.99 E-value=2.5e-07 Score=99.84 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-----------ccccceEEEeecC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 922 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 922 (1206)
++.+.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999996553 35888888866411 1124567888874
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.98 E-value=3.1e-07 Score=97.40 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=49.6
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCCHHHHHHHH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV~Etl~f~ 250 (1206)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++..... ....++++|++...+.+++.+++...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 556789999999999999999999999975 778888866542111 12457888876555666666666543
No 308
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=1.5e-06 Score=100.69 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=85.5
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCC---------CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH---HHH
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE---SLL 936 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e---~l~ 936 (1206)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+.. +....|++.+.+. ..|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 4999999999999999999995421 135688999885431 2233455443221 11111 111
Q ss_pred Hh--hh--h--cCCCCCC--HHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH----HHH-hhCCcEEE
Q 000971 937 YS--AW--L--RLPPEVD--SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 1003 (1206)
Q Consensus 937 ~~--a~--l--r~~~~~~--~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia----~aL-~~~P~iL~ 1003 (1206)
.. +. + ....+.. ..+....+.++++.+++.+..--.++.. ...+|+++++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 00 00 0 0011111 1223344677888887755431111211 234787888888877 555 334454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999998887653
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.94 E-value=1.4e-05 Score=95.38 Aligned_cols=34 Identities=38% Similarity=0.664 Sum_probs=29.2
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 466777777777 8899999999999999999965
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.92 E-value=3.9e-07 Score=96.59 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=31.6
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
....++|++++|+||||||||||+++|++.. |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3456789999999999999999999999754 6678887654
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.91 E-value=1e-05 Score=102.87 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHHhcCeE
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~p~~~i~~~~d~v 1051 (1206)
.-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.|+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCC
Confidence 3479999999999999999999999999996 999887766666666554456778875 88765 566677643
No 312
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.90 E-value=5.7e-06 Score=95.89 Aligned_cols=157 Identities=15% Similarity=0.044 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-------C-CceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH---HHHH
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSS-------L-KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR---ETLA 248 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~-------~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---Etl~ 248 (1206)
.++|+|+||||||||+++|+|..... . ..+|.|.++|.++.- -.++|++.+.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l---~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML---VDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE---EECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE---EeCCCchhcCC----HHHHHHHHHHHH
Confidence 48999999999999999999986411 0 247899999865421 12345554422 11121 1111
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
........-.-++ . .+++. . ..+....+..+++.+++.+..--.|+|. +.-+|+|+
T Consensus 254 ~~~~aD~il~VvD-------------~-s~~~~-~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVID-------------S-TFSEN-L--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEE-------------T-TSCHH-H--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEE-------------C-CCCcc-h--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 1000000000000 0 00000 0 0011123456777888766553445553 33478888
Q ss_pred hhHHHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 000971 329 RKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 329 kkRvsia----~~l-~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
++|+.++ +.+ ..++++ +|+|++|......+.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8888877 444 333343 89999999999999988877544
No 313
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.88 E-value=7.9e-06 Score=86.07 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 000971 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370 (1206)
Q Consensus 331 Rvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~ 370 (1206)
....|++++..|.+.++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999 99999999999988776543
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.84 E-value=9.2e-06 Score=92.71 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=81.7
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
-|+.+.+-++||+++.|.|++|+|||||+.-++..... .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHHH
Confidence 57777888999999999999999999998888742210 11 11233221 13332221
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
.++......+.+..+.+ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11222222222222222 1599999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHh-C-CCEEEEEec
Q 000971 1016 AAIVMRTVRNTVD-T-GRTVVCTIH 1038 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~-~-g~tvi~~~H 1038 (1206)
.|...++++.+ . |..+|++=|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 55566666654 3 677777644
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.82 E-value=2.9e-05 Score=89.89 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPG 1041 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~p~ 1041 (1206)
..+|++++|++. +.+...++-|+++| +|++|+|......+.+.++.... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55556777789999 99999999988888877776543 77888888 7643
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.82 E-value=5.6e-06 Score=87.64 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.0
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~ 205 (1206)
+.+++|++++|+||||||||||+++|++.+.++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998553
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.81 E-value=7.5e-06 Score=84.99 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=32.8
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~ 205 (1206)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999987653
No 318
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.80 E-value=4.4e-05 Score=86.78 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=31.0
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.-|+++.+-+++|+++.|.|++|+|||||+.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35788888899999999999999999999877764
No 319
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.78 E-value=4.1e-06 Score=95.35 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=61.6
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------c---cceEEEe-cC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------P---ERTAAYI-SQ 233 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~---~~~~~yv-~Q 233 (1206)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 789998876653211 0 3457888 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 000971 234 HDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~ 250 (1206)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65556666677777654
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.75 E-value=2.2e-06 Score=93.96 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=35.2
Q ss_pred EEEEEee-EEEEecchhhhhcccccCceEEeecceeeeeC---CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 828 SLTFDEV-VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRP---GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 828 ~l~~~~v-~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~---G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+.++|+ +++++ +...+|+|+|+.|++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4788898 87762 123599999999999 9999999999999999999999743
No 321
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.74 E-value=4.9e-07 Score=108.70 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=52.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCC-CCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDN-HIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~-~~~~l 241 (1206)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+.... +.+.+++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 3678899999999 99999999999999999999875 67889998765432211 23445555432 34444
Q ss_pred CHHHHH
Q 000971 242 TVRETL 247 (1206)
Q Consensus 242 TV~Etl 247 (1206)
.+.|++
T Consensus 127 l~IDEI 132 (499)
T 2dhr_A 127 VFIDEI 132 (499)
T ss_dssp EEEECG
T ss_pred EEEehH
Confidence 444444
No 322
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.68 E-value=5.7e-05 Score=86.18 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=86.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
...-|+.+.+-++||+++.|.|+||+|||||+..++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 45678888888999999999999999999999988865421 11 23556543 3444
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.+-..=. .... ..+.+.+..+ | .
T Consensus 87 ~ql~~Rl----------------ls~~---------------------------------~~v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLALRA----------------LSDL---------------------------------TSINMHDLES---G-----R 109 (338)
T ss_dssp HHHHHHH----------------HHHH---------------------------------HCCCHHHHHH---T-----C
T ss_pred HHHHHHH----------------HHHh---------------------------------hCCCHHHHhc---C-----C
Confidence 4332210 0000 0001111111 2 4
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
||+++.+|++.|...+.++++++.|+|... ..+|...++++....++..+|.+ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999888888899999998643 23555566665544424444433 66666654
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=1.2e-05 Score=84.90 Aligned_cols=41 Identities=27% Similarity=0.071 Sum_probs=25.5
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
....+++|||+.+++|++++|+|||||||||+.+.|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999998763
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.65 E-value=9.3e-06 Score=84.85 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999864
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.57 E-value=4.6e-06 Score=88.23 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=42.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCeeC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV--TYNGHDM 219 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I--~~nG~~~ 219 (1206)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 445667777889999999999999999999999999986 2 5766 7777554
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.54 E-value=6.1e-06 Score=90.79 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=45.4
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCeeCCCCCc----cceEEEe
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALA---GKLDSSLKVSGRVT--------YNGHDMGEFVP----ERTAAYI 231 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~La---G~l~~~~~~~G~I~--------~nG~~~~~~~~----~~~~~yv 231 (1206)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++..... .+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887665 89988 88887743211 2456777
Q ss_pred cCC
Q 000971 232 SQH 234 (1206)
Q Consensus 232 ~Q~ 234 (1206)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 327
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.54 E-value=2.6e-05 Score=97.62 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=71.1
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHH
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLY 937 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 937 (1206)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+... ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3567889999999999999999999999633211123555 45543221 1112223333332111100 000
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~ 1017 (1206)
..+.|+ +|...++ .......-..+..++++| |+.|++..+..
T Consensus 76 ----------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 011121 1111221 112222335677889999 99999988774
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1018 IVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1018 ~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
.+ +.+.+.|.++|+++|..+
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGG
T ss_pred HH----HHHHHccCCEEEEecCCc
Confidence 33 333345889999999865
No 328
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.51 E-value=7.1e-05 Score=95.21 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=57.6
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEpts-gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.++|++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 34589999999999999999999999999996 999888777777665432 133566666678877777788753
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.49 E-value=8.7e-07 Score=106.53 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=51.6
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCccc---ccceEEEeecCCC-CCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FARISGYCEQNDI-HSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~~~~~gyv~q~~~-~~~~~T 930 (1206)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+++++|... ..|.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3688999999999 89999999999999999998643 356788886542211 1122345566543 345555
Q ss_pred HHHHH
Q 000971 931 VYESL 935 (1206)
Q Consensus 931 v~e~l 935 (1206)
+.|++
T Consensus 128 ~IDEI 132 (499)
T 2dhr_A 128 FIDEI 132 (499)
T ss_dssp EEECG
T ss_pred EEehH
Confidence 55555
No 330
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.49 E-value=0.0002 Score=83.30 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=48.9
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcCCCcchhH
Q 000971 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGRHSCQ 1072 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~~~~~~~~ 1072 (1206)
.+|.+|++||+..- |......+.+.+.++.. .+.++|+++|++. ....++.-+ ..+ +.+.+.+.|+.. .+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~--~~~~l~~~~-~~r~~~~~i~~~pl~~--~~ 197 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA--VLNNLDPST-RGIMGKYVIRFSPYTK--DQ 197 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH--HHHTSCHHH-HHHHTTCEEECCCCBH--HH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch--HHHHhCHHh-hhcCCCceEEeCCCCH--HH
Confidence 45889999999876 88888788777766555 5789999999974 222222111 111 123577777753 34
Q ss_pred HHHHHHh
Q 000971 1073 LISYFEA 1079 (1206)
Q Consensus 1073 ~~~yf~~ 1079 (1206)
+.+++..
T Consensus 198 ~~~~l~~ 204 (389)
T 1fnn_A 198 IFDILLD 204 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 331
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=3.6e-05 Score=81.21 Aligned_cols=38 Identities=29% Similarity=0.158 Sum_probs=24.3
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999643
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.47 E-value=2.8e-05 Score=84.15 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4556789999999999999999999999986 25678888764
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.46 E-value=3.8e-05 Score=79.60 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.6
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999 9999999999999999999864
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.46 E-value=1e-05 Score=88.97 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=44.6
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc---CCCCCCeeEEEEE--------EcCccCCc----ccccceEEEee
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCE 920 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~ 920 (1206)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 7654 3468887 78876532 22445678888
Q ss_pred cCC
Q 000971 921 QND 923 (1206)
Q Consensus 921 q~~ 923 (1206)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 335
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.45 E-value=4.6e-05 Score=79.08 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~n 215 (1206)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987632 35666543
No 336
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.45 E-value=0.00017 Score=81.33 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=82.9
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
++.| .+||+|++|+|||||++.|.|.... + +.+.+. .+..+..|++.+++... ++.+ .
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~~--tTr~~~~gi~~~~~~~i---~~iD---------T 63 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKAQ--TTRHRIVGIHTEGAYQA---IYVD---------T 63 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCSS--CCSSCEEEEEEETTEEE---EEES---------S
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCCC--cceeeEEEEEEECCeeE---EEEE---------C
Confidence 3444 8999999999999999999986420 1 122221 22345567777754311 0000 0
Q ss_pred CCCCCHHHHHHHHHHHH-----HHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-
Q 000971 944 PPEVDSETRKMFIEEVM-----ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA- 1015 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l-----~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~LDEPTsgLD~~~- 1015 (1206)
|. ...+. .....+.+ ..+.-.+..--.+- ... +|.|++ .++..+. ..|.||++ +.+|...
T Consensus 64 pG-~~~~~-~~~l~~~~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~ 131 (301)
T 1ega_A 64 PG-LHMEE-KRAINRLMNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQE 131 (301)
T ss_dssp SS-CCHHH-HHHHHHHHTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCC
T ss_pred cC-CCccc-hhhHHHHHHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCcc
Confidence 10 11000 00111111 00111111111111 123 898887 4566666 68999998 7899876
Q ss_pred HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHHhcCeEE
Q 000971 1016 AAIVMRTVRNTVDT-GR--TVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~-g~--tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
...+.+.+.++.+. |. .+.+++|+-. .+.+++|.+.
T Consensus 132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 132 KADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 56677888877654 43 5666777654 4666666655
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.44 E-value=2.1e-05 Score=89.39 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=39.7
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 45789999999999999999999999999999985431 136777766654
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.41 E-value=3e-05 Score=83.88 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=35.4
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeC
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~ 219 (1206)
-++..++|++++|.||+|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4456689999999999999999999999997 47788877653
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.40 E-value=2.1e-05 Score=83.41 Aligned_cols=71 Identities=6% Similarity=0.019 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-HHHhcCeEEEEec
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID-IFDAFDELFLMKR 1056 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~-i~~~~d~v~ll~~ 1056 (1206)
+.|+.+|..++..+..+|..+..+ ++.+++.....+.+.++.. .+.+||+.+|..... ....||.++++..
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 567888888888888887654322 2344555555554444322 356888888875421 2456898888853
No 340
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.39 E-value=0.00026 Score=81.89 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=26.8
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+|+++++.++ .++|+|++|||||||++.|+|.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 47889999987 9999999999999999999994
No 341
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.39 E-value=0.00046 Score=79.26 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=28.5
Q ss_pred eecce-eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 857 LNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 857 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45443 5799999999999999999999988876
No 342
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.38 E-value=0.00038 Score=79.03 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=33.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
...-|+++.+-+++|+++.|.|+||+|||||+..++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35568888888999999999999999999999888754
No 343
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.37 E-value=0.00065 Score=76.11 Aligned_cols=71 Identities=24% Similarity=0.262 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHH
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPG---IDI 1044 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~p~---~~i 1044 (1206)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998776532 22233333333211 2356788899764 234
Q ss_pred HHhcCeEE
Q 000971 1045 FDAFDELF 1052 (1206)
Q Consensus 1045 ~~~~d~v~ 1052 (1206)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44555443
No 344
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=4.6e-05 Score=79.52 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999654
No 345
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=6.2e-05 Score=78.11 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEc
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~ 903 (1206)
+|++++|+||||||||||++.|++..... ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 68999999999999999999999864321 34555443
No 346
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.32 E-value=2.1e-05 Score=86.21 Aligned_cols=39 Identities=41% Similarity=0.490 Sum_probs=36.3
Q ss_pred ceEeeceeeeEeC---CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 165 LTILKDVSGIIKP---GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 165 ~~iL~~vs~~i~~---G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999 99999999999999999999999764
No 347
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.32 E-value=7.1e-05 Score=79.03 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=26.2
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999998763
No 348
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.31 E-value=0.0001 Score=78.34 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 349
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.30 E-value=3.7e-05 Score=89.19 Aligned_cols=44 Identities=36% Similarity=0.329 Sum_probs=39.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY 214 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 214 (1206)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999963 566654
No 350
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.28 E-value=0.00025 Score=74.99 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=36.9
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH--HhhcCeEEEEc
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~--~~~fD~vilL~ 399 (1206)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++.. .++.+|+. .+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~-~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFV-VPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEE-CTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEE-echhhhcCcHhhCCEEEEEE
Confidence 3678899999999998888765444 2345555554444444321 23444443 3333333 56788877763
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.00014 Score=77.00 Aligned_cols=45 Identities=31% Similarity=0.189 Sum_probs=37.0
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
-.+++|++++|+|+||||||||++.|++.++ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3567899999999999999999999999864 15788888766643
No 352
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.26 E-value=0.00054 Score=78.05 Aligned_cols=34 Identities=38% Similarity=0.558 Sum_probs=28.7
Q ss_pred Eeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 345543 6799999999999999999999988875
No 353
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.22 E-value=5e-05 Score=80.21 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=39.4
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEE--EEcCccC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNI--TISGYPK 907 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 907 (1206)
.+.+.++...++|++++|+||||||||||+++|++... ..|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 45677788889999999999999999999999998643 12444 7777543
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.21 E-value=9.3e-05 Score=76.09 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~ 217 (1206)
++|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999874 55666653
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.19 E-value=6.9e-05 Score=79.24 Aligned_cols=40 Identities=25% Similarity=0.082 Sum_probs=33.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~ 217 (1206)
.++|++++|+||||||||||++.|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999988654 566666543
No 356
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.19 E-value=0.00011 Score=77.25 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=26.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999875
No 357
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.19 E-value=0.0008 Score=80.14 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=93.6
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
-|+.+.+-+++|+++.|.|++|+|||||..-++.... .+. .-+.++.. ++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~--~vl~~slE-----------------------~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV--GVGIYSLE-----------------------MPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC--CEEEEESS-----------------------SCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEECC-----------------------CCHHH
Confidence 5777777899999999999999999999887775221 110 01222221 12111
Q ss_pred HHH--HhhhhcCC------CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEE
Q 000971 934 SLL--YSAWLRLP------PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIF 1003 (1206)
Q Consensus 934 ~l~--~~a~lr~~------~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~ 1003 (1206)
-.. .+.....+ ...+.++ ...+.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEE
Confidence 110 00000000 0122222 22334444443222211 111 125677665 34556665 4799999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------Cch-------HHHHhcCeEEEE
Q 000971 1004 MDEPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PGI-------DIFDAFDELFLM 1054 (1206)
Q Consensus 1004 LDEPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------p~~-------~i~~~~d~v~ll 1054 (1206)
+|..+.=.+. .....+.+.|+.++++ |++||+++|- |.. .+...+|.|+.|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998753322 1234677778888765 9999999983 221 245578998888
Q ss_pred ec
Q 000971 1055 KR 1056 (1206)
Q Consensus 1055 ~~ 1056 (1206)
.+
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 358
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.16 E-value=0.0024 Score=71.39 Aligned_cols=28 Identities=43% Similarity=0.668 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++.-++|.||||+|||||+++|++.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999999998753
No 359
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.15 E-value=0.00038 Score=80.53 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=27.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 360
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.14 E-value=7.3e-05 Score=86.69 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=34.7
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999853
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.00017 Score=76.69 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=25.8
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
No 362
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.00093 Score=77.18 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=41.3
Q ss_pred cCChhhhhHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllD-EptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i 381 (1206)
.+|+||++++. +.+...++-++++| ++..|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 58999988876 55555677888999 99999999988888877765432 44555443
No 363
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.03 E-value=0.0011 Score=75.64 Aligned_cols=36 Identities=33% Similarity=0.370 Sum_probs=30.0
Q ss_pred Eeecee-eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 167 ILKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 167 iL~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 679999999999999999999999988753
No 364
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.01 E-value=0.0022 Score=73.63 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=29.3
Q ss_pred eecee-eeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 168 LKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 168 L~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
|+.+- |-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 67999999999999999999999999875
No 365
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.01 E-value=0.00031 Score=83.62 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=49.0
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE-EecCcEEEEEcCCC
Q 000971 997 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL-MKRGGQEIYVGPLG 1067 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l-l~~gg~~~~~g~~~ 1067 (1206)
.+|++||+||+..-.+. .+...+..++..+.+.|+.||+++|.|..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888888888888999999999865332112222222 22 35777777775
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.99 E-value=0.00038 Score=73.67 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.4
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
--.+++|.+++|+|++|||||||.+.|++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457789999999999999999999999864
No 367
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.99 E-value=0.00015 Score=88.19 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=35.4
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCe
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG-RVT-YNGH 217 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~-~nG~ 217 (1206)
.+++|++++|+|+||||||||+++|+|.+.+. +| .|. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCc
Confidence 57899999999999999999999999999875 55 674 7764
No 368
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.97 E-value=0.00013 Score=91.41 Aligned_cols=49 Identities=33% Similarity=0.308 Sum_probs=35.2
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~ 222 (1206)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 3457789999999999999999999999765431 236777 566554443
No 369
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.95 E-value=0.00027 Score=72.26 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999865
No 370
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.91 E-value=0.00064 Score=76.60 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.3
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999743
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.91 E-value=0.00036 Score=70.06 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=23.5
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455565 99999999999999999986
No 372
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.91 E-value=0.00048 Score=69.14 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=24.3
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999873
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.90 E-value=0.00013 Score=82.77 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
No 374
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00038 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.7
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999754
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.77 E-value=0.0016 Score=76.65 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++.+++++||+|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
No 376
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.75 E-value=0.00047 Score=70.73 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=29.4
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
.+|++++|+|+|||||||+++.|++.. |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 479999999999999999999998753 456666643
No 377
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00034 Score=81.01 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 378
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.75 E-value=0.0011 Score=84.76 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.3
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
++.+++|+.+.|+||||+|||||+++|++...
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999999998653
No 379
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.74 E-value=0.0017 Score=72.99 Aligned_cols=30 Identities=37% Similarity=0.600 Sum_probs=26.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++++.-++|.||||+|||||+++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 457788999999999999999999999864
No 380
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.71 E-value=0.0003 Score=83.75 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE-EcCCeEEEecCh
Q 000971 341 PALALFMDEISTGLDS-STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQIVYQGPR 409 (1206)
Q Consensus 341 ~~~vlllDEptsgLDs-~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil-L~~G~iv~~G~~ 409 (1206)
++++||+||+..-.+. .+...+...+..+. ..+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 7899999999887764 56666777777654 34556666555544443222222222 344555554443
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.70 E-value=0.00019 Score=81.36 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=33.4
Q ss_pred ceEEeecceeeeeCCe------EEEEEccCCCcHHHHHhhhcCCC
Q 000971 853 KLVLLNGLSGAFRPGV------LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~------~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+.|++++..+..+. ++||+||||||||||+++|.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457888888887776 99999999999999999999854
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.70 E-value=0.00019 Score=82.53 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=39.6
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
.+++++++.+++|..++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4677888888999999999999999999999999987653 45555443
No 383
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.65 E-value=0.0056 Score=70.91 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGR--MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~--~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999998765
No 384
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.62 E-value=0.00047 Score=79.36 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=32.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~ 218 (1206)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987654 5677665544
No 385
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.59 E-value=0.00072 Score=72.98 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=27.7
Q ss_pred EeeceeeeEe---CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 167 ILKDVSGIIK---PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 167 iL~~vs~~i~---~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677777776 9999999999999999999999998763
No 386
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.58 E-value=0.00032 Score=80.22 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=42.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEee--------------cceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLN--------------GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~--------------~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+|+++.++. .+..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4567788776642 234677 89999999999999999999999999999863
No 387
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.57 E-value=0.00062 Score=69.57 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.|++++|+||||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 388
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.55 E-value=0.00042 Score=84.25 Aligned_cols=43 Identities=35% Similarity=0.439 Sum_probs=33.7
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NIT-ISGYP 906 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 906 (1206)
..+++|++++|+|+||||||||+++|+|+..+. .| .+. ++|..
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 357899999999999999999999999965421 33 564 77743
No 389
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.53 E-value=0.0073 Score=67.78 Aligned_cols=28 Identities=43% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
|...+++.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568899999999999999999998754
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.52 E-value=0.00063 Score=70.15 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=30.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCe
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG--RVTYNGH 217 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G--~I~~nG~ 217 (1206)
++|++++|.|++||||||+++.|++.+.+ .| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999998743 24 5555543
No 391
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.50 E-value=0.00086 Score=70.70 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=30.8
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
..++|++++|+|+||||||||++.|++.... ..|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999985421 1244555443
No 392
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.47 E-value=0.0021 Score=65.64 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=23.2
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
No 393
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.47 E-value=0.00049 Score=84.05 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=38.6
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 566677777 89999999999999999999999998764 67776655
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.46 E-value=0.0028 Score=64.79 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999974
No 395
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.44 E-value=0.0022 Score=82.01 Aligned_cols=32 Identities=41% Similarity=0.565 Sum_probs=29.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+.+++|+.++|.||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999753
No 396
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.41 E-value=0.0026 Score=75.65 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-------C--CCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCCHHHH
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS-------S--LKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~-------~--~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
-.++|+|+||+|||||++.|+|.... . -...|.+.++|.++.-++. ++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999998531 0 0247899999976532211 2223333343334444444444
Q ss_pred HHH
Q 000971 247 LAF 249 (1206)
Q Consensus 247 l~f 249 (1206)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.36 E-value=0.00067 Score=72.06 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=33.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCe
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG--RVTYNGH 217 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G--~I~~nG~ 217 (1206)
.+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 35689999999999999999999999988643 56 6666653
No 398
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.36 E-value=0.0096 Score=64.18 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d 1049 (1206)
+.|.-.+.. ...+.+-++|++||+-. ++|......+++.+.....+-++|+++.--+...+.+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555542 33578899999999976 6777665444444443333335666665444433444554
No 399
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.34 E-value=0.0053 Score=72.84 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=29.5
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+.+-+.+|+++.|.|++|+|||||.--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 5777777799999999999999999999776664
No 400
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.31 E-value=0.021 Score=65.62 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.7
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998888653
No 401
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.31 E-value=0.0026 Score=66.10 Aligned_cols=35 Identities=37% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999998888 5689999999999999999984
No 402
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.0044 Score=68.78 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.9
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.++.-+.|.||+|+|||||.+.|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999998643
No 403
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.0014 Score=75.75 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++..++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999998764
No 404
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.28 E-value=0.0016 Score=68.82 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=23.3
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34555565 99999999999999999885
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.23 E-value=0.0023 Score=67.60 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=23.5
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34455554 999999999999999998863
No 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.23 E-value=0.0019 Score=66.90 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=26.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888888999999999999999999999976
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.22 E-value=0.0029 Score=65.67 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=21.1
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 7899999999999999999873
No 408
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.20 E-value=0.0016 Score=68.73 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
No 409
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.18 E-value=0.0012 Score=69.16 Aligned_cols=35 Identities=34% Similarity=0.463 Sum_probs=30.5
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888886 689999999999999999874
No 410
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.18 E-value=0.025 Score=60.96 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
-++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997653
No 411
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.15 E-value=0.0011 Score=76.14 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=34.2
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999999999999999999999999874
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.15 E-value=0.0021 Score=69.36 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=26.1
Q ss_pred Eeecceeeee---CCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 856 LLNGLSGAFR---PGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 856 vL~~vs~~i~---~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
-|.++++.+. +|.+++|.|++||||||+++.|+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3666677666 999999999999999999999997543
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.14 E-value=0.002 Score=66.33 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~ 218 (1206)
.+++|+||+|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865332234777776543
No 414
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.0098 Score=69.95 Aligned_cols=35 Identities=29% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY 214 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 214 (1206)
++.+++++||+||||||++..|++.+... .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68899999999999999999999987653 344444
No 415
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.11 E-value=0.015 Score=66.77 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.2
Q ss_pred Eeecce--eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLS--GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs--~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455544 4689999999999999999999877764
No 416
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.10 E-value=0.0018 Score=69.17 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY 214 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 214 (1206)
+..++|+|||||||||+.+.|++.+....-.+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876321112455544
No 417
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.06 E-value=0.0036 Score=74.40 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=29.9
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCC------C----CeeEEEEEEcCcc
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKT------G----GYITGNITISGYP 906 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~------~----~~~~G~i~i~g~~ 906 (1206)
.+||+|+||+|||||++.|+|... + ....|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999998532 1 1346888888864
No 418
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.04 E-value=0.0064 Score=65.10 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHHhcCeEEEEe
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~p~~~i~~~~d~v~ll~ 1055 (1206)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++...+|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355566777777999999999 56678889999999875
No 419
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.04 E-value=0.0007 Score=78.32 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=36.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.....-.......+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 44678888877 999999999999999998874432 344433332221100011234445544444456777
Q ss_pred HHHHHH
Q 000971 245 ETLAFS 250 (1206)
Q Consensus 245 Etl~f~ 250 (1206)
||.-++
T Consensus 101 DTpG~g 106 (361)
T 2qag_A 101 DTPGYG 106 (361)
T ss_dssp C-----
T ss_pred Eecccc
Confidence 776653
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.97 E-value=0.0022 Score=67.21 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=31.2
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5799999999999999999874
No 421
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.93 E-value=0.0092 Score=67.61 Aligned_cols=46 Identities=4% Similarity=0.067 Sum_probs=34.5
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 996 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 996 ~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
..+|.+||+||+.. .-+..+...+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 45799999999865 23446777888888887777777777777553
No 422
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.92 E-value=0.018 Score=65.19 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=28.1
Q ss_pred Eeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444 6799999999999999999999887764
No 423
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.92 E-value=0.0021 Score=66.55 Aligned_cols=30 Identities=43% Similarity=0.566 Sum_probs=26.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.++|.++.|.|++||||||+.+.|+..+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999998764
No 424
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.83 E-value=0.0029 Score=66.72 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=25.0
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998644
No 425
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.83 E-value=0.0031 Score=64.83 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=24.0
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.83 E-value=0.015 Score=64.28 Aligned_cols=28 Identities=43% Similarity=0.678 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.-++|.||||+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998764
No 427
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.82 E-value=0.0021 Score=70.40 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=31.2
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~ 217 (1206)
..+++.+++|+|+|||||||+.+.|+..+. .|.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecH
Confidence 456788999999999999999999999875 244556653
No 428
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.81 E-value=0.001 Score=71.98 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=36.4
Q ss_pred HhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 338 MVGPALALFMDEIST-GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 338 l~~~~~vlllDEpts-gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+.+-+++++||.-. ++|......+++.+..... ...+++++.+.+.+...++|+.
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 578889999999966 6887766555554443321 2346666666666666566654
No 429
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.80 E-value=0.019 Score=61.92 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=28.8
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q 000971 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIHQ 1039 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H~ 1039 (1206)
.+|+++++..+.+.++......+...++.+.. ...+||+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 46889988888888888666555555443321 12588888883
No 430
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.79 E-value=0.026 Score=64.98 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999864
No 431
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.79 E-value=0.0031 Score=67.43 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEE--------cCccCCc----ccccceEEEeecC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITI--------SGYPKKQ----ETFARISGYCEQN 922 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 922 (1206)
+.+++|+||+||||||+.++|++.... -...|++.. +|.+... ..+.+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 468999999999999999999974311 123466655 5654431 1233446677665
No 432
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.77 E-value=0.001 Score=75.70 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=32.2
Q ss_pred EeeceeeeEeCCeE--EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 167 ILKDVSGIIKPGRM--TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 167 iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56677777788887 99999999999999999999764
No 433
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.76 E-value=0.0044 Score=71.90 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=26.3
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456678889999999999999999999987
No 434
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.74 E-value=0.0075 Score=63.15 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
+..-+.|.||+|+|||||++.|+...... ...+.|+
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~~~------------------~~~~~~~-------------------------- 88 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELAKR------------------NVSSLIV-------------------------- 88 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHTT------------------TCCEEEE--------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc------------------CCeEEEE--------------------------
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1023 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP--TsgLD~~~~~~i~~~l 1023 (1206)
.......++.....-....... ..+.++++|++||+ ...-+......+..++
T Consensus 89 -----~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 89 -----YVPELFRELKHSLQDQTMNEKL---------------------DYIKKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp -----EHHHHHHHHHHC---CCCHHHH---------------------HHHHHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred -----EhHHHHHHHHHHhccchHHHHH---------------------HHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhCCCEEEEEecCCchHHHHhc
Q 000971 1024 RNTVDTGRTVVCTIHQPGIDIFDAF 1048 (1206)
Q Consensus 1024 ~~~~~~g~tvi~~~H~p~~~i~~~~ 1048 (1206)
......+..+|++++.+-.++...+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
No 435
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.69 E-value=0.0032 Score=73.89 Aligned_cols=45 Identities=24% Similarity=0.126 Sum_probs=37.7
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~ 218 (1206)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998764 5677665543
No 436
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.68 E-value=0.01 Score=59.88 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 437
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.67 E-value=0.074 Score=64.16 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=28.4
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+.+-+.+|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4566666799999999999999999999766653
No 438
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.66 E-value=0.0046 Score=64.03 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=26.1
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999864
No 439
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.62 E-value=0.0024 Score=77.88 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=39.1
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 4678888888 899999999999999999999998543 23577776664
No 440
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.60 E-value=0.0041 Score=71.20 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=31.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 441
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.55 E-value=0.0098 Score=60.01 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 442
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.54 E-value=0.0054 Score=64.42 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000971 180 MTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 443
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.52 E-value=0.0065 Score=62.64 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.+|.+++|.|+|||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 444
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.48 E-value=0.0048 Score=70.89 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.7
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeec
Confidence 46789999999999999999999984321 12455555443
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.47 E-value=0.0023 Score=71.79 Aligned_cols=44 Identities=25% Similarity=0.132 Sum_probs=35.7
Q ss_pred ec-eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 169 KD-VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 169 ~~-vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999988653 45665544
No 446
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.45 E-value=0.0056 Score=68.82 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999973
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.43 E-value=0.008 Score=61.73 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 448
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.063 Score=61.71 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++..-++|.||+|+|||||.++|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3556789999999999999999998753
No 449
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.42 E-value=0.019 Score=66.15 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.9
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 450
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.41 E-value=0.031 Score=66.34 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=33.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
..-|+.+.+-+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44677777889999999999999999999999888754
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.39 E-value=0.012 Score=60.37 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 452
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.38 E-value=0.0067 Score=62.05 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998875
No 453
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.37 E-value=0.0018 Score=74.93 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.4
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34778888877 999999999999999998753
No 454
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.30 E-value=0.0025 Score=72.52 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=33.2
Q ss_pred EEeecceeeeeCCeE--EEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVL--TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 378899999999998 999999999999999999974
No 455
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.28 E-value=0.0071 Score=62.22 Aligned_cols=38 Identities=34% Similarity=0.315 Sum_probs=28.0
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCCC-CCeeEEEEEEcCc
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRKT-GGYITGNITISGY 905 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 905 (1206)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5889999999999999999987422 2233466666553
No 456
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.28 E-value=0.0066 Score=63.67 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 457
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.23 E-value=0.007 Score=64.77 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
++..+.|.||+|+|||||++.++...... -.--+.++........
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~~---------------------------------- 95 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASIS---------------------------------- 95 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGSC----------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHH----------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH--HHHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA--AAIVMRTV 1023 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~--~~~i~~~l 1023 (1206)
.=+...+.+|.+|++|| ...++... ...+.+.+
T Consensus 96 --------------------------------------------~~~~~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l 130 (242)
T 3bos_A 96 --------------------------------------------TALLEGLEQFDLICIDD-VDAVAGHPLWEEAIFDLY 130 (242)
T ss_dssp --------------------------------------------GGGGTTGGGSSEEEEET-GGGGTTCHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHhccCCCEEEEec-cccccCCHHHHHHHHHHH
Q ss_pred HHHHhCCCE-EEEEecCC
Q 000971 1024 RNTVDTGRT-VVCTIHQP 1040 (1206)
Q Consensus 1024 ~~~~~~g~t-vi~~~H~p 1040 (1206)
......+.. +|++++.+
T Consensus 131 ~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 131 NRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp HHHHHHCSCEEEEEESSC
T ss_pred HHHHHcCCCeEEEEcCCC
No 458
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.22 E-value=0.0059 Score=64.06 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
No 459
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.22 E-value=0.0067 Score=66.25 Aligned_cols=34 Identities=41% Similarity=0.773 Sum_probs=24.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 45555555555 88999999999999999999864
No 460
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.18 E-value=0.0089 Score=60.52 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|.||+||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997754
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.17 E-value=0.11 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.0
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..|..-+.|.||.|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566788999999999999999999643
No 462
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.17 E-value=0.0088 Score=69.40 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=33.5
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC---------CCeeEEEEEEcCc
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---------GGYITGNITISGY 905 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 905 (1206)
+-+.++.|..++|+|++|+|||||++.|+|... -.+..|.+.+++.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 345678899999999999999999999998521 1234577776653
No 463
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.0027 Score=72.65 Aligned_cols=40 Identities=30% Similarity=0.635 Sum_probs=35.0
Q ss_pred ceEeeceeeeEeCCeE--EEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 165 LTILKDVSGIIKPGRM--TLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4577788888888988 999999999999999999998754
No 464
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.11 E-value=0.0097 Score=61.58 Aligned_cols=27 Identities=44% Similarity=0.588 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++.++.|.|+|||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
No 465
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.07 E-value=0.01 Score=66.20 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+.++.|.|||||||||+.+.|+..++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999999987653
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.04 E-value=0.0077 Score=64.92 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 467
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.03 E-value=0.0098 Score=61.47 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.1
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
....+|.++.|+|++||||||+.+.|++..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999998753
No 468
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.01 E-value=0.059 Score=58.52 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
+++..-+.|.||+|+|||||.+.++...... -+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhc--------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----------C
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 1012 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL-----------D 1012 (1206)
.-.+..+.+-.+..+.-..|.+||+||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCCc---hHHHH--hcCeEEEEe
Q 000971 1013 ARAAAIVMRTVRNTVD----TGRTVVCTIHQPG---IDIFD--AFDELFLMK 1055 (1206)
Q Consensus 1013 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~p~---~~i~~--~~d~v~ll~ 1055 (1206)
......+.+++..+.. .+..||+++..|. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
No 469
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.96 E-value=0.012 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+|.+++|.|++||||||+.+.|+-.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987653
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.89 E-value=0.066 Score=63.44 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=32.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
...-|+.+.+-++||+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 34567877778999999999999999999999888764
No 471
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.85 E-value=0.0097 Score=65.08 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 472
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.82 E-value=0.0097 Score=62.96 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=26.6
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+++|.+++|+|++||||||+.+.|++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999999999754
No 473
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.76 E-value=0.015 Score=60.74 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 474
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.68 E-value=0.0097 Score=62.39 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 475
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.67 E-value=0.015 Score=58.76 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 000971 180 MTLLLGPPASGKTTLLLAL 198 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L 198 (1206)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 476
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.65 E-value=0.017 Score=58.95 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 000971 179 RMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.65 E-value=0.015 Score=62.74 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
No 478
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.64 E-value=0.017 Score=60.53 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987653
No 479
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.63 E-value=0.016 Score=59.65 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999999765
No 480
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.61 E-value=0.014 Score=59.91 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
No 481
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.60 E-value=0.014 Score=59.95 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 482
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.54 E-value=0.014 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 483
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.53 E-value=0.015 Score=59.61 Aligned_cols=27 Identities=44% Similarity=0.358 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356788999999999999999998654
No 484
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.45 E-value=0.013 Score=61.03 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998764
No 485
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.43 E-value=0.013 Score=60.76 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999987654
No 486
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.40 E-value=0.0086 Score=62.31 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++++.+++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998764
No 487
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.39 E-value=0.013 Score=59.82 Aligned_cols=24 Identities=46% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++|+|||||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 488
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.39 E-value=0.017 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
|.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999654
No 489
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.39 E-value=0.018 Score=59.61 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 490
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.34 E-value=0.043 Score=57.22 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHHhcCeEEEEe
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~p~~~i~~~~d~v~ll~ 1055 (1206)
+.+++++||.-- +|+. +++.++.+++.|..||++-+ .++.++.+.+|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6533 35667787778999999999 55678889999998775
No 491
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.34 E-value=0.01 Score=69.59 Aligned_cols=46 Identities=22% Similarity=0.082 Sum_probs=35.4
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
+++++. +|++++++|++|+||||++..|++..... .+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 577887 89999999999999999999999854321 25666655543
No 492
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.33 E-value=0.02 Score=60.16 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 493
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.32 E-value=0.017 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 494
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.30 E-value=0.0051 Score=70.32 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.9
Q ss_pred eEEeecceeeeeCCeE--EEEEccCCCcHHHHHhhhcCCC
Q 000971 854 LVLLNGLSGAFRPGVL--TALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+++.++..++.|++ +.|.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478889999999998 9999999999999999999753
No 495
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.26 E-value=0.016 Score=59.18 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
No 496
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.19 E-value=0.025 Score=58.39 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 497
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.17 E-value=0.017 Score=62.18 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.8
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999863
No 498
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.16 E-value=0.089 Score=60.59 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=0.0
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcC--CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhh
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a 939 (1206)
+-+++|+++.|.||+|+|||||...++. ...++ .-++++........+.+..|.-.++-.+....++.+.+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l---- 141 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL---- 141 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH----
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH----
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCC------
Q 000971 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL------ 1011 (1206)
Q Consensus 940 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~LDEPTsgL------ 1011 (1206)
.++..++ .+++++++|..++=.
T Consensus 142 --------------------------------------------------~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~ 171 (366)
T 1xp8_A 142 --------------------------------------------------EIMELLVRSGAIDVVVVDSVAALTPRAEIE 171 (366)
T ss_dssp --------------------------------------------------HHHHHHHTTTCCSEEEEECTTTCCCSTTC-
T ss_pred --------------------------------------------------HHHHHHHhcCCCCEEEEeChHHhccccccc
Q ss_pred ----CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 000971 1012 ----DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1038 (1206)
Q Consensus 1012 ----D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1038 (1206)
|. ..++.+.+.+++| .+.+++||++.|
T Consensus 172 g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 172 GDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 499
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.16 E-value=0.024 Score=60.05 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 000971 178 GRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
No 500
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.16 E-value=0.024 Score=60.27 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
Done!