Query 000973
Match_columns 1205
No_of_seqs 828 out of 5573
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 12:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 4.7E-83 1E-87 729.3 26.9 492 374-898 185-736 (802)
2 KOG0732 AAA+-type ATPase conta 100.0 5.4E-78 1.2E-82 737.9 35.6 913 251-1203 141-1079(1080)
3 KOG0730 AAA+-type ATPase [Post 100.0 2E-72 4.4E-77 654.4 24.3 465 374-898 180-655 (693)
4 TIGR01243 CDC48 AAA family ATP 100.0 6.2E-59 1.3E-63 589.6 26.2 489 374-898 173-675 (733)
5 KOG0735 AAA+-type ATPase [Post 100.0 6.3E-53 1.4E-57 488.7 25.3 442 412-899 430-889 (952)
6 KOG0736 Peroxisome assembly fa 100.0 1E-52 2.2E-57 491.9 24.7 477 377-898 399-898 (953)
7 COG0464 SpoVK ATPases of the A 100.0 5E-47 1.1E-51 462.5 23.5 466 397-910 2-480 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 5.6E-47 1.2E-51 414.8 18.0 248 372-641 144-394 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-46 6.8E-51 427.7 19.0 287 347-643 483-773 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-45 4.2E-50 429.1 15.7 270 349-642 408-677 (693)
11 KOG0741 AAA+-type ATPase [Post 100.0 6.1E-45 1.3E-49 410.6 16.4 442 371-845 211-682 (744)
12 KOG0736 Peroxisome assembly fa 100.0 1.3E-41 2.9E-46 398.8 18.4 284 348-644 647-937 (953)
13 KOG0738 AAA+-type ATPase [Post 100.0 3.1E-41 6.8E-46 370.5 13.0 266 370-644 203-474 (491)
14 KOG0734 AAA+-type ATPase conta 100.0 6.7E-39 1.4E-43 362.2 15.8 244 374-640 299-542 (752)
15 KOG0726 26S proteasome regulat 100.0 7.1E-38 1.5E-42 331.6 14.0 250 369-640 175-427 (440)
16 KOG0727 26S proteasome regulat 100.0 6.2E-37 1.4E-41 318.6 16.9 244 374-639 150-396 (408)
17 KOG0739 AAA+-type ATPase [Post 100.0 2.3E-37 4.9E-42 328.8 13.7 227 374-608 128-355 (439)
18 KOG0728 26S proteasome regulat 100.0 9.8E-37 2.1E-41 316.8 16.2 245 374-640 142-389 (404)
19 KOG0735 AAA+-type ATPase [Post 100.0 1.3E-36 2.9E-41 353.4 17.2 230 374-609 662-891 (952)
20 KOG0729 26S proteasome regulat 100.0 4.5E-36 9.7E-41 314.2 17.5 246 372-639 170-418 (435)
21 KOG0731 AAA+-type ATPase conta 100.0 2.3E-36 5E-41 364.3 16.4 248 373-642 305-556 (774)
22 KOG0652 26S proteasome regulat 100.0 6.7E-36 1.5E-40 312.1 13.3 245 374-640 166-413 (424)
23 COG1222 RPT1 ATP-dependent 26S 100.0 6.6E-35 1.4E-39 320.1 10.0 223 648-900 142-377 (406)
24 COG1223 Predicted ATPase (AAA+ 100.0 2.6E-34 5.6E-39 301.0 13.4 240 374-641 116-357 (368)
25 PTZ00454 26S protease regulato 100.0 4.8E-34 1E-38 334.5 16.0 247 373-641 139-388 (398)
26 KOG0737 AAA+-type ATPase [Post 100.0 3.5E-34 7.5E-39 316.8 12.2 228 374-609 87-317 (386)
27 COG0464 SpoVK ATPases of the A 100.0 2.2E-33 4.7E-38 342.7 17.8 252 372-643 235-487 (494)
28 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-33 5.5E-38 356.0 17.3 266 373-644 447-715 (733)
29 COG0465 HflB ATP-dependent Zn 100.0 2.6E-33 5.6E-38 333.7 14.5 246 374-642 145-393 (596)
30 PRK03992 proteasome-activating 100.0 9.6E-33 2.1E-37 325.3 15.7 253 372-646 124-379 (389)
31 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-32 2.6E-37 328.8 15.4 353 477-897 81-446 (489)
32 PTZ00361 26 proteosome regulat 100.0 1.6E-32 3.4E-37 323.2 13.6 247 372-640 176-425 (438)
33 TIGR02639 ClpA ATP-dependent C 100.0 2.5E-31 5.4E-36 336.7 22.8 420 376-849 179-665 (731)
34 CHL00195 ycf46 Ycf46; Provisio 100.0 8.9E-32 1.9E-36 321.4 15.5 244 374-644 223-468 (489)
35 TIGR03689 pup_AAA proteasome A 100.0 1.5E-30 3.1E-35 310.1 16.4 228 372-605 175-412 (512)
36 PRK11034 clpA ATP-dependent Cl 100.0 5.4E-30 1.2E-34 319.8 21.8 421 376-849 183-669 (758)
37 KOG0651 26S proteasome regulat 100.0 1.1E-30 2.3E-35 280.8 12.2 228 374-607 127-357 (388)
38 TIGR01241 FtsH_fam ATP-depende 100.0 1.6E-30 3.4E-35 316.8 15.0 246 373-641 49-297 (495)
39 TIGR01242 26Sp45 26S proteasom 100.0 5.3E-30 1.2E-34 300.8 16.2 245 373-639 116-363 (364)
40 KOG0740 AAA+-type ATPase [Post 100.0 2.7E-30 5.8E-35 296.7 11.6 260 374-644 148-409 (428)
41 KOG0738 AAA+-type ATPase [Post 100.0 1.3E-30 2.9E-35 287.0 6.1 223 645-898 200-435 (491)
42 CHL00176 ftsH cell division pr 100.0 1.6E-29 3.4E-34 310.9 15.6 244 374-640 178-424 (638)
43 KOG0732 AAA+-type ATPase conta 100.0 1.3E-29 2.9E-34 312.6 9.4 334 651-1012 259-642 (1080)
44 COG0542 clpA ATP-binding subun 100.0 1.1E-28 2.5E-33 300.5 14.3 387 375-811 166-645 (786)
45 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.4E-28 3.1E-33 313.5 14.2 217 399-642 1616-1880(2281)
46 TIGR03345 VI_ClpV1 type VI sec 100.0 1.4E-27 3.1E-32 304.0 20.6 442 375-849 183-783 (852)
47 CHL00095 clpC Clp protease ATP 99.9 5E-27 1.1E-31 300.7 22.8 425 376-849 176-735 (821)
48 PRK10733 hflB ATP-dependent me 99.9 1.8E-27 4E-32 296.3 14.8 246 374-642 147-395 (644)
49 KOG0734 AAA+-type ATPase conta 99.9 1.4E-27 3.1E-32 270.8 11.4 209 654-896 301-522 (752)
50 PLN00020 ribulose bisphosphate 99.9 4.7E-27 1E-31 263.1 14.5 221 374-605 110-353 (413)
51 KOG0737 AAA+-type ATPase [Post 99.9 1.2E-27 2.6E-32 265.1 9.4 218 653-899 88-315 (386)
52 KOG0739 AAA+-type ATPase [Post 99.9 1.2E-28 2.5E-33 262.7 1.2 225 645-899 121-354 (439)
53 KOG0728 26S proteasome regulat 99.9 1.4E-27 3.1E-32 248.7 7.0 220 651-900 141-373 (404)
54 KOG0726 26S proteasome regulat 99.9 2.7E-27 5.9E-32 251.5 5.9 223 651-903 179-414 (440)
55 TIGR03346 chaperone_ClpB ATP-d 99.9 2.5E-25 5.5E-30 285.8 23.5 204 375-601 169-394 (852)
56 KOG0652 26S proteasome regulat 99.9 1.6E-26 3.4E-31 242.1 9.8 218 651-898 165-395 (424)
57 KOG0727 26S proteasome regulat 99.9 1.5E-26 3.3E-31 241.3 8.3 223 650-902 148-383 (408)
58 COG1223 Predicted ATPase (AAA+ 99.9 8.1E-27 1.8E-31 244.9 5.9 178 703-898 151-338 (368)
59 PRK10865 protein disaggregatio 99.9 3.3E-25 7.2E-30 283.3 20.5 190 376-588 175-381 (857)
60 KOG0731 AAA+-type ATPase conta 99.9 9.7E-26 2.1E-30 272.7 8.8 216 652-898 306-536 (774)
61 KOG0729 26S proteasome regulat 99.9 1.5E-25 3.3E-30 235.4 6.3 225 647-901 167-404 (435)
62 KOG0741 AAA+-type ATPase [Post 99.9 4.4E-25 9.6E-30 250.5 6.0 221 652-898 214-458 (744)
63 PTZ00454 26S protease regulato 99.9 2E-24 4.3E-29 253.6 8.9 220 650-899 138-370 (398)
64 PRK03992 proteasome-activating 99.9 9.1E-24 2E-28 249.3 8.8 221 648-898 122-355 (389)
65 COG0465 HflB ATP-dependent Zn 99.9 2.8E-23 6E-28 248.3 11.2 217 652-899 145-374 (596)
66 PTZ00361 26 proteosome regulat 99.9 3.8E-23 8.2E-28 244.0 8.8 219 651-899 177-408 (438)
67 KOG0740 AAA+-type ATPase [Post 99.9 1.7E-23 3.8E-28 240.8 4.5 223 649-901 145-377 (428)
68 PLN00020 ribulose bisphosphate 99.9 5.5E-23 1.2E-27 230.6 7.2 143 701-848 146-313 (413)
69 cd05496 Bromo_WDR9_II Bromodom 99.9 1.9E-23 4.1E-28 203.3 2.6 110 898-1009 5-114 (119)
70 cd05528 Bromo_AAA Bromodomain; 99.9 2.1E-23 4.5E-28 201.4 2.4 109 896-1004 1-110 (112)
71 CHL00206 ycf2 Ycf2; Provisiona 99.9 5.8E-23 1.3E-27 262.8 6.9 184 701-899 1628-1861(2281)
72 cd05497 Bromo_Brdt_I_like Brom 99.9 4.5E-23 9.8E-28 197.8 2.8 102 897-1001 4-107 (107)
73 KOG0651 26S proteasome regulat 99.9 1.3E-22 2.8E-27 218.8 4.1 220 652-901 127-359 (388)
74 TIGR01241 FtsH_fam ATP-depende 99.9 3.4E-22 7.4E-27 243.8 7.7 216 651-897 49-277 (495)
75 TIGR03689 pup_AAA proteasome A 99.9 1.1E-21 2.4E-26 234.3 10.5 207 649-889 174-403 (512)
76 cd05507 Bromo_brd8_like Bromod 99.8 3.4E-22 7.4E-27 191.2 2.4 102 897-1001 2-103 (104)
77 TIGR01242 26Sp45 26S proteasom 99.8 2.1E-21 4.6E-26 228.2 8.9 219 650-898 115-346 (364)
78 cd05505 Bromo_WSTF_like Bromod 99.8 3.4E-22 7.3E-27 188.1 1.7 94 902-998 4-97 (97)
79 cd05508 Bromo_RACK7 Bromodomai 99.8 4.4E-22 9.5E-27 187.7 2.1 97 897-997 2-98 (99)
80 cd05495 Bromo_cbp_like Bromodo 99.8 5.6E-22 1.2E-26 190.7 2.2 100 898-1000 3-105 (108)
81 cd05510 Bromo_SPT7_like Bromod 99.8 6.9E-22 1.5E-26 190.7 2.2 103 898-1002 7-110 (112)
82 CHL00176 ftsH cell division pr 99.8 5.1E-21 1.1E-25 235.9 8.9 216 652-898 178-406 (638)
83 CHL00181 cbbX CbbX; Provisiona 99.8 2.6E-20 5.6E-25 210.7 13.5 220 379-608 23-259 (287)
84 TIGR02881 spore_V_K stage V sp 99.8 1.7E-20 3.7E-25 210.6 11.9 221 377-608 4-243 (261)
85 TIGR02880 cbbX_cfxQ probable R 99.8 6.5E-20 1.4E-24 207.6 13.8 219 380-608 23-258 (284)
86 cd05503 Bromo_BAZ2A_B_like Bro 99.8 2.4E-21 5.3E-26 183.2 1.6 94 902-998 4-97 (97)
87 cd05504 Bromo_Acf1_like Bromod 99.8 2.7E-21 5.9E-26 188.0 1.9 100 900-1002 14-113 (115)
88 cd05513 Bromo_brd7_like Bromod 99.8 2.9E-21 6.2E-26 181.9 1.8 96 899-997 2-97 (98)
89 cd05511 Bromo_TFIID Bromodomai 99.8 3.3E-21 7.1E-26 186.7 1.9 107 900-1009 2-108 (112)
90 KOG1474 Transcription initiati 99.8 4.3E-21 9.3E-26 237.4 2.4 110 900-1012 224-335 (640)
91 cd05512 Bromo_brd1_like Bromod 99.8 4.6E-21 1E-25 180.9 1.2 95 899-996 2-96 (98)
92 cd05501 Bromo_SP100C_like Brom 99.8 9.3E-21 2E-25 178.1 2.4 97 898-1001 3-99 (102)
93 cd05509 Bromo_gcn5_like Bromod 99.8 7.7E-21 1.7E-25 181.6 1.8 99 900-1001 3-101 (101)
94 cd05516 Bromo_SNF2L2 Bromodoma 99.8 1.4E-20 3E-25 180.9 1.6 100 899-1001 2-107 (107)
95 PRK10733 hflB ATP-dependent me 99.8 7.8E-20 1.7E-24 228.2 7.3 178 703-898 185-375 (644)
96 cd05502 Bromo_tif1_like Bromod 99.8 2.5E-20 5.5E-25 180.2 2.3 100 900-1003 6-108 (109)
97 cd05506 Bromo_plant1 Bromodoma 99.8 3.1E-20 6.7E-25 176.8 1.5 96 900-998 2-99 (99)
98 cd05500 Bromo_BDF1_2_I Bromodo 99.8 5E-20 1.1E-24 176.3 2.4 98 898-998 4-103 (103)
99 cd05499 Bromo_BDF1_2_II Bromod 99.8 6.3E-20 1.4E-24 175.5 1.9 94 902-998 4-102 (102)
100 cd05498 Bromo_Brdt_II_like Bro 99.8 6.4E-20 1.4E-24 175.6 1.5 95 901-998 3-102 (102)
101 cd05519 Bromo_SNF2 Bromodomain 99.7 2E-19 4.4E-24 172.1 1.3 96 900-998 2-103 (103)
102 PF05496 RuvB_N: Holliday junc 99.7 6.3E-18 1.4E-22 179.4 11.8 186 375-595 20-221 (233)
103 KOG0744 AAA+-type ATPase [Post 99.7 2.2E-18 4.8E-23 187.0 8.2 218 378-597 141-390 (423)
104 PF00004 AAA: ATPase family as 99.7 5.6E-18 1.2E-22 169.1 10.6 130 416-551 1-132 (132)
105 KOG0743 AAA+-type ATPase [Post 99.7 4.6E-18 1E-22 194.3 10.9 215 364-594 186-411 (457)
106 cd05515 Bromo_polybromo_V Brom 99.7 4E-19 8.8E-24 170.3 1.2 84 912-998 20-103 (105)
107 cd05525 Bromo_ASH1 Bromodomain 99.7 5.5E-19 1.2E-23 169.0 2.0 82 913-997 23-104 (106)
108 cd05529 Bromo_WDR9_I_like Brom 99.7 7.6E-19 1.7E-23 174.1 2.9 97 901-1000 27-127 (128)
109 cd05517 Bromo_polybromo_II Bro 99.7 6E-19 1.3E-23 168.1 1.0 82 912-996 20-101 (103)
110 cd05524 Bromo_polybromo_I Brom 99.7 6.3E-19 1.4E-23 170.9 1.1 98 903-1003 7-110 (113)
111 cd05518 Bromo_polybromo_IV Bro 99.7 9.3E-19 2E-23 166.7 1.3 82 912-996 20-101 (103)
112 cd05520 Bromo_polybromo_III Br 99.7 1.1E-18 2.4E-23 166.3 1.7 82 912-996 20-101 (103)
113 KOG1051 Chaperone HSP104 and r 99.7 1.1E-16 2.3E-21 198.7 19.0 403 378-810 185-711 (898)
114 smart00297 BROMO bromo domain. 99.7 2.5E-18 5.4E-23 166.3 2.3 102 896-1000 5-106 (107)
115 KOG0742 AAA+-type ATPase [Post 99.7 9E-17 1.9E-21 178.4 10.8 210 376-600 352-589 (630)
116 cd05522 Bromo_Rsc1_2_II Bromod 99.7 9.6E-18 2.1E-22 160.4 1.5 82 913-997 22-103 (104)
117 cd05521 Bromo_Rsc1_2_I Bromodo 99.7 1.1E-17 2.5E-22 159.8 1.4 82 913-999 22-103 (106)
118 cd05492 Bromo_ZMYND11 Bromodom 99.6 2.3E-17 4.9E-22 157.6 0.9 93 906-1001 8-106 (109)
119 COG2256 MGS1 ATPase related to 99.6 6.8E-16 1.5E-20 173.7 12.1 177 375-598 20-212 (436)
120 PF00439 Bromodomain: Bromodom 99.6 2.8E-17 6E-22 151.8 -0.1 83 903-988 1-83 (84)
121 cd04369 Bromodomain Bromodomai 99.6 5.6E-17 1.2E-21 153.8 1.2 95 901-998 3-99 (99)
122 KOG0742 AAA+-type ATPase [Post 99.6 3.9E-16 8.4E-21 173.5 7.5 180 704-891 385-587 (630)
123 COG2255 RuvB Holliday junction 99.6 1.6E-15 3.5E-20 163.3 11.6 190 375-599 22-227 (332)
124 TIGR00635 ruvB Holliday juncti 99.6 4.4E-15 9.5E-20 170.8 13.4 192 377-603 2-209 (305)
125 PF00004 AAA: ATPase family as 99.6 6E-16 1.3E-20 154.4 3.5 121 706-831 1-131 (132)
126 PRK00080 ruvB Holliday junctio 99.6 8.7E-15 1.9E-19 169.9 13.3 196 375-605 21-232 (328)
127 PRK14956 DNA polymerase III su 99.6 1E-14 2.2E-19 172.4 13.2 192 374-600 13-227 (484)
128 PRK07003 DNA polymerase III su 99.6 2E-14 4.4E-19 175.0 13.9 192 374-600 11-225 (830)
129 TIGR00763 lon ATP-dependent pr 99.5 1E-14 2.2E-19 186.7 11.2 202 380-604 321-555 (775)
130 PRK12323 DNA polymerase III su 99.5 1.7E-14 3.6E-19 174.0 11.4 192 374-600 11-230 (700)
131 PRK00149 dnaA chromosomal repl 99.5 4.1E-14 8.9E-19 171.1 14.7 210 371-604 114-331 (450)
132 KOG0744 AAA+-type ATPase [Post 99.5 4.9E-15 1.1E-19 161.3 3.8 143 704-850 178-344 (423)
133 TIGR00362 DnaA chromosomal rep 99.5 1E-13 2.2E-18 165.7 15.3 209 372-604 103-319 (405)
134 PRK14949 DNA polymerase III su 99.5 6.5E-14 1.4E-18 173.8 13.7 192 374-600 11-225 (944)
135 KOG2028 ATPase related to the 99.5 1.2E-13 2.7E-18 152.1 14.3 216 369-640 134-369 (554)
136 PRK06893 DNA replication initi 99.5 1E-13 2.3E-18 152.6 13.3 197 369-598 6-206 (229)
137 PLN03025 replication factor C 99.5 1.1E-13 2.4E-18 160.1 13.7 190 374-599 8-201 (319)
138 PRK08084 DNA replication initi 99.5 2E-13 4.4E-18 150.9 15.0 194 369-599 12-213 (235)
139 PRK14962 DNA polymerase III su 99.5 9.9E-14 2.2E-18 166.7 13.3 179 374-586 9-210 (472)
140 TIGR02902 spore_lonB ATP-depen 99.5 6.6E-14 1.4E-18 171.6 11.7 216 374-637 60-330 (531)
141 PRK14960 DNA polymerase III su 99.5 1E-13 2.2E-18 167.7 13.0 192 374-600 10-224 (702)
142 PRK14088 dnaA chromosomal repl 99.5 1.8E-13 3.9E-18 164.2 15.1 208 372-603 98-313 (440)
143 KOG0989 Replication factor C, 99.5 1E-13 2.2E-18 151.1 10.7 184 374-586 31-222 (346)
144 PRK07994 DNA polymerase III su 99.5 2.1E-13 4.5E-18 167.6 13.9 191 375-600 12-225 (647)
145 PRK08691 DNA polymerase III su 99.5 2.4E-13 5.1E-18 166.1 13.3 193 374-601 11-226 (709)
146 PRK14086 dnaA chromosomal repl 99.5 4.6E-13 9.9E-18 162.4 15.3 207 373-603 282-496 (617)
147 PRK08727 hypothetical protein; 99.5 8E-13 1.7E-17 145.9 15.4 182 369-586 9-196 (233)
148 PRK14961 DNA polymerase III su 99.5 3.5E-13 7.5E-18 158.5 13.1 192 374-600 11-225 (363)
149 PRK14958 DNA polymerase III su 99.5 3.1E-13 6.7E-18 164.1 13.0 192 374-600 11-225 (509)
150 PRK14964 DNA polymerase III su 99.5 2.8E-13 6E-18 162.1 12.4 192 374-600 8-222 (491)
151 PRK06645 DNA polymerase III su 99.4 4.2E-13 9.1E-18 161.9 13.5 193 374-601 16-235 (507)
152 TIGR02928 orc1/cdc6 family rep 99.4 1.3E-12 2.8E-17 154.1 16.8 230 374-639 10-274 (365)
153 PRK12402 replication factor C 99.4 9E-13 1.9E-17 153.7 15.2 194 374-600 10-228 (337)
154 PRK13342 recombination factor 99.4 4.6E-13 1E-17 160.2 12.8 181 375-599 8-200 (413)
155 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.5E-13 1.4E-17 145.9 12.9 199 370-605 6-211 (226)
156 COG0466 Lon ATP-dependent Lon 99.4 3.8E-13 8.2E-18 160.8 11.7 207 381-605 325-563 (782)
157 PRK07940 DNA polymerase III su 99.4 7.3E-13 1.6E-17 155.8 14.0 190 377-597 3-216 (394)
158 PF00308 Bac_DnaA: Bacterial d 99.4 6.8E-13 1.5E-17 144.9 12.2 202 373-599 2-212 (219)
159 PRK07764 DNA polymerase III su 99.4 6.3E-13 1.4E-17 168.4 13.0 195 374-599 10-225 (824)
160 PRK04195 replication factor C 99.4 7.2E-13 1.6E-17 161.5 12.9 190 373-600 8-204 (482)
161 PRK14952 DNA polymerase III su 99.4 1E-12 2.2E-17 160.9 13.9 192 374-600 8-224 (584)
162 PRK14963 DNA polymerase III su 99.4 1.1E-12 2.5E-17 158.9 14.3 189 374-597 9-219 (504)
163 CHL00181 cbbX CbbX; Provisiona 99.4 7.6E-14 1.6E-18 158.2 3.6 137 704-848 60-211 (287)
164 PTZ00112 origin recognition co 99.4 2.8E-12 6.1E-17 156.4 16.9 201 375-596 751-979 (1164)
165 COG5076 Transcription factor i 99.4 8.5E-14 1.8E-18 163.8 3.9 91 912-1005 162-252 (371)
166 TIGR02881 spore_V_K stage V sp 99.4 2.5E-13 5.3E-18 152.7 7.1 137 704-848 43-193 (261)
167 PRK08903 DnaA regulatory inact 99.4 1.7E-12 3.6E-17 143.0 13.4 195 369-605 8-209 (227)
168 PRK14951 DNA polymerase III su 99.4 1.1E-12 2.3E-17 161.1 12.8 191 375-600 12-230 (618)
169 PRK14959 DNA polymerase III su 99.4 1.5E-12 3.2E-17 158.8 13.3 182 374-586 11-212 (624)
170 PRK00411 cdc6 cell division co 99.4 3.1E-12 6.8E-17 152.5 16.0 231 374-639 25-282 (394)
171 PRK05563 DNA polymerase III su 99.4 1.5E-12 3.2E-17 160.4 13.2 192 374-600 11-225 (559)
172 KOG2004 Mitochondrial ATP-depe 99.4 9.8E-13 2.1E-17 155.9 11.0 210 380-607 412-653 (906)
173 PRK14957 DNA polymerase III su 99.4 1.9E-12 4E-17 157.2 13.6 192 374-600 11-225 (546)
174 KOG1245 Chromatin remodeling c 99.4 6.3E-14 1.4E-18 183.3 1.0 95 902-1000 1305-1399(1404)
175 PRK12422 chromosomal replicati 99.4 2.8E-12 6E-17 153.6 14.4 207 372-600 104-318 (445)
176 cd05526 Bromo_polybromo_VI Bro 99.4 9.1E-14 2E-18 132.4 1.2 81 915-1000 26-106 (110)
177 PRK14969 DNA polymerase III su 99.4 1.5E-12 3.2E-17 159.2 12.1 191 375-600 12-225 (527)
178 PRK05896 DNA polymerase III su 99.4 2.7E-12 5.9E-17 155.7 13.5 190 374-598 11-223 (605)
179 PRK05642 DNA replication initi 99.4 8.4E-12 1.8E-16 137.9 16.3 202 369-603 9-216 (234)
180 PRK13341 recombination factor 99.4 3E-12 6.6E-17 160.5 13.9 182 375-600 24-222 (725)
181 PRK05342 clpX ATP-dependent pr 99.4 3E-12 6.5E-17 151.4 13.1 222 377-607 68-382 (412)
182 PRK07133 DNA polymerase III su 99.4 3E-12 6.6E-17 158.1 13.4 191 374-599 13-223 (725)
183 TIGR00390 hslU ATP-dependent p 99.4 2.1E-12 4.6E-17 149.4 10.5 128 477-606 247-407 (441)
184 PRK14965 DNA polymerase III su 99.3 3.1E-12 6.8E-17 158.2 12.3 190 374-598 11-223 (576)
185 PRK06647 DNA polymerase III su 99.3 4.3E-12 9.3E-17 155.7 13.0 192 374-600 11-225 (563)
186 TIGR02880 cbbX_cfxQ probable R 99.3 4.3E-13 9.3E-18 152.1 4.0 138 703-848 58-210 (284)
187 PRK05201 hslU ATP-dependent pr 99.3 2.3E-12 5E-17 149.1 9.9 218 381-605 17-408 (443)
188 TIGR02397 dnaX_nterm DNA polym 99.3 4.4E-12 9.5E-17 149.1 12.4 190 374-598 9-221 (355)
189 PRK06305 DNA polymerase III su 99.3 5.6E-12 1.2E-16 151.5 13.1 182 375-586 13-214 (451)
190 PRK14953 DNA polymerase III su 99.3 6.5E-12 1.4E-16 151.9 13.0 191 374-599 11-224 (486)
191 PHA02544 44 clamp loader, smal 99.3 7.9E-12 1.7E-16 144.6 13.1 186 373-597 15-208 (316)
192 PRK00440 rfc replication facto 99.3 8.2E-12 1.8E-16 144.4 13.2 182 374-586 12-195 (319)
193 PRK08451 DNA polymerase III su 99.3 8.8E-12 1.9E-16 150.6 13.8 192 374-600 9-223 (535)
194 PRK09111 DNA polymerase III su 99.3 6.9E-12 1.5E-16 154.5 13.1 192 374-600 19-238 (598)
195 PRK14087 dnaA chromosomal repl 99.3 1.6E-11 3.5E-16 147.6 15.6 206 375-605 111-329 (450)
196 COG2812 DnaX DNA polymerase II 99.3 3.2E-12 7E-17 152.4 9.5 199 374-601 11-226 (515)
197 PRK14970 DNA polymerase III su 99.3 7.7E-12 1.7E-16 147.7 12.6 179 374-586 12-201 (367)
198 PRK10787 DNA-binding ATP-depen 99.3 5.7E-12 1.2E-16 160.0 12.0 208 380-606 323-558 (784)
199 PF05673 DUF815: Protein of un 99.3 1.3E-11 2.8E-16 133.4 12.5 202 367-598 15-244 (249)
200 TIGR00382 clpX endopeptidase C 99.3 1E-11 2.2E-16 146.1 12.1 224 377-607 74-388 (413)
201 KOG0943 Predicted ubiquitin-pr 99.3 1.6E-12 3.4E-17 156.2 4.5 94 55-159 1625-1719(3015)
202 PRK11034 clpA ATP-dependent Cl 99.3 5.4E-12 1.2E-16 159.0 9.1 206 380-607 459-719 (758)
203 COG0593 DnaA ATPase involved i 99.3 2.9E-11 6.3E-16 140.5 14.0 231 370-642 78-316 (408)
204 PRK14955 DNA polymerase III su 99.3 1.3E-11 2.9E-16 146.7 11.6 189 374-597 11-230 (397)
205 TIGR00763 lon ATP-dependent pr 99.3 2.2E-12 4.7E-17 165.4 4.1 138 704-848 348-507 (775)
206 PRK06620 hypothetical protein; 99.3 2.2E-11 4.9E-16 132.4 11.3 179 369-598 6-192 (214)
207 PRK14948 DNA polymerase III su 99.3 2.7E-11 6E-16 150.2 13.4 189 374-597 11-224 (620)
208 PRK14950 DNA polymerase III su 99.3 2.7E-11 5.9E-16 150.6 13.1 190 374-598 11-224 (585)
209 PRK14954 DNA polymerase III su 99.2 3.2E-11 7E-16 148.8 13.5 179 374-586 11-220 (620)
210 TIGR02903 spore_lon_C ATP-depe 99.2 7E-11 1.5E-15 147.2 15.4 227 375-638 150-429 (615)
211 COG1224 TIP49 DNA helicase TIP 99.2 6.2E-11 1.3E-15 131.4 12.7 114 478-608 292-417 (450)
212 TIGR02639 ClpA ATP-dependent C 99.2 1.8E-11 3.8E-16 156.3 9.5 203 379-607 454-715 (731)
213 COG0542 clpA ATP-binding subun 99.2 2.8E-11 6.1E-16 149.3 9.4 238 346-606 458-757 (786)
214 PRK14971 DNA polymerase III su 99.2 1.1E-10 2.3E-15 145.1 13.6 189 374-597 12-224 (614)
215 TIGR03345 VI_ClpV1 type VI sec 99.2 5.3E-11 1.2E-15 152.9 10.5 202 379-606 566-833 (852)
216 PRK09087 hypothetical protein; 99.2 1.1E-10 2.3E-15 128.2 11.1 169 369-586 11-187 (226)
217 PRK10865 protein disaggregatio 99.2 1.2E-10 2.5E-15 150.3 12.2 239 345-606 534-831 (857)
218 KOG0743 AAA+-type ATPase [Post 99.1 3.4E-11 7.5E-16 138.5 5.4 134 700-846 232-383 (457)
219 TIGR03346 chaperone_ClpB ATP-d 99.1 1.9E-10 4.1E-15 149.0 12.6 207 378-607 564-829 (852)
220 COG0466 Lon ATP-dependent Lon 99.1 4.6E-11 9.9E-16 143.2 6.3 139 704-848 351-510 (782)
221 KOG1472 Histone acetyltransfer 99.1 2.7E-11 5.8E-16 147.0 4.4 103 898-1003 606-708 (720)
222 COG1474 CDC6 Cdc6-related prot 99.1 4.8E-10 1E-14 130.9 14.6 214 375-609 13-251 (366)
223 cd00009 AAA The AAA+ (ATPases 99.1 5.2E-10 1.1E-14 112.5 12.4 140 383-550 2-150 (151)
224 CHL00095 clpC Clp protease ATP 99.1 1.2E-10 2.7E-15 150.3 9.6 205 379-606 509-784 (821)
225 KOG2004 Mitochondrial ATP-depe 99.1 1.4E-10 3E-15 138.1 9.1 140 704-849 439-599 (906)
226 PF05496 RuvB_N: Holliday junc 99.1 7.4E-11 1.6E-15 126.0 5.6 124 704-844 51-190 (233)
227 PF06068 TIP49: TIP49 C-termin 99.1 3.3E-10 7.2E-15 128.2 11.0 105 478-599 279-395 (398)
228 PRK13407 bchI magnesium chelat 99.1 2.5E-10 5.3E-15 131.5 10.1 164 375-564 4-215 (334)
229 KOG0991 Replication factor C, 99.1 2.1E-10 4.6E-15 120.3 7.9 190 372-597 20-213 (333)
230 TIGR02640 gas_vesic_GvpN gas v 99.1 5.7E-10 1.2E-14 125.5 11.5 133 413-565 21-198 (262)
231 COG2607 Predicted ATPase (AAA+ 99.0 2.2E-09 4.7E-14 113.9 13.5 204 367-600 48-278 (287)
232 COG2256 MGS1 ATPase related to 99.0 1.4E-10 3E-15 131.4 4.8 124 704-846 49-176 (436)
233 CHL00081 chlI Mg-protoporyphyr 99.0 8.7E-10 1.9E-14 127.2 10.9 163 374-564 12-231 (350)
234 PRK09112 DNA polymerase III su 99.0 1.6E-09 3.4E-14 126.2 12.6 185 374-588 18-234 (351)
235 PRK07471 DNA polymerase III su 99.0 2.1E-09 4.5E-14 125.9 13.3 181 374-586 14-230 (365)
236 PRK05564 DNA polymerase III su 99.0 1.7E-09 3.6E-14 125.1 11.6 175 377-587 2-183 (313)
237 TIGR02030 BchI-ChlI magnesium 99.0 1.7E-09 3.8E-14 124.8 10.7 159 377-564 2-218 (337)
238 TIGR01650 PD_CobS cobaltochela 99.0 4.3E-10 9.4E-15 127.7 5.6 142 412-567 63-235 (327)
239 TIGR00678 holB DNA polymerase 99.0 2.1E-09 4.5E-14 114.9 10.6 146 412-586 13-183 (188)
240 PRK10787 DNA-binding ATP-depen 99.0 6.9E-10 1.5E-14 141.2 7.2 137 704-847 350-507 (784)
241 cd05491 Bromo_TBP7_like Bromod 98.9 6.3E-11 1.4E-15 113.0 -2.2 53 937-994 63-115 (119)
242 PRK06893 DNA replication initi 98.9 7.5E-10 1.6E-14 122.1 5.0 131 704-847 40-175 (229)
243 PRK11331 5-methylcytosine-spec 98.9 4.8E-09 1E-13 123.4 11.3 146 378-551 174-357 (459)
244 TIGR03015 pepcterm_ATPase puta 98.9 1.6E-08 3.5E-13 114.1 15.3 196 414-639 44-266 (269)
245 TIGR00635 ruvB Holliday juncti 98.9 2.6E-09 5.7E-14 122.9 8.9 127 704-847 31-173 (305)
246 KOG1969 DNA replication checkp 98.9 9.7E-09 2.1E-13 123.1 13.2 206 374-605 266-517 (877)
247 TIGR00390 hslU ATP-dependent p 98.9 1E-09 2.3E-14 127.3 4.9 142 703-848 47-352 (441)
248 PRK05201 hslU ATP-dependent pr 98.9 8.4E-10 1.8E-14 128.1 3.8 186 703-911 50-407 (443)
249 PRK00080 ruvB Holliday junctio 98.9 1.6E-09 3.4E-14 126.1 6.0 128 704-848 52-195 (328)
250 PRK04132 replication factor C 98.9 8.7E-09 1.9E-13 130.3 12.1 150 415-586 566-723 (846)
251 PRK07399 DNA polymerase III su 98.9 6.2E-09 1.3E-13 119.7 9.4 181 377-589 2-216 (314)
252 PHA02244 ATPase-like protein 98.8 8.3E-09 1.8E-13 118.4 10.2 123 411-553 117-262 (383)
253 PF01078 Mg_chelatase: Magnesi 98.8 2.1E-09 4.6E-14 114.2 4.9 47 377-438 1-47 (206)
254 COG1219 ClpX ATP-dependent pro 98.8 1.1E-08 2.4E-13 112.3 10.4 131 377-515 58-203 (408)
255 cd05494 Bromodomain_1 Bromodom 98.8 2.5E-09 5.4E-14 104.0 4.8 71 906-976 11-90 (114)
256 COG0714 MoxR-like ATPases [Gen 98.8 3.3E-09 7.1E-14 123.5 6.7 157 381-565 26-202 (329)
257 COG2255 RuvB Holliday junction 98.8 3.1E-09 6.8E-14 115.4 5.6 125 705-846 54-194 (332)
258 PRK13531 regulatory ATPase Rav 98.8 1.6E-08 3.5E-13 119.9 12.0 154 380-564 21-193 (498)
259 COG0470 HolB ATPase involved i 98.8 1.3E-08 2.8E-13 118.0 10.9 153 380-561 2-177 (325)
260 smart00382 AAA ATPases associa 98.8 1.1E-08 2.5E-13 101.7 9.1 130 413-551 2-146 (148)
261 TIGR02442 Cob-chelat-sub cobal 98.8 9.3E-09 2E-13 129.2 9.8 158 377-563 2-212 (633)
262 COG5271 MDN1 AAA ATPase contai 98.8 1.2E-08 2.6E-13 128.0 10.2 142 412-568 1542-1706(4600)
263 KOG1942 DNA helicase, TBP-inte 98.8 4.7E-08 1E-12 105.8 13.2 111 478-605 297-420 (456)
264 PRK05342 clpX ATP-dependent pr 98.8 4.9E-09 1.1E-13 124.3 6.4 106 703-810 108-240 (412)
265 PRK08058 DNA polymerase III su 98.8 1.3E-08 2.7E-13 118.3 9.7 152 377-563 3-180 (329)
266 TIGR00382 clpX endopeptidase C 98.8 6E-09 1.3E-13 122.8 6.0 105 704-810 117-248 (413)
267 PF07724 AAA_2: AAA domain (Cd 98.8 1.6E-08 3.4E-13 106.2 8.5 117 412-531 2-131 (171)
268 PRK04195 replication factor C 98.8 8.8E-09 1.9E-13 125.9 7.0 131 703-848 39-175 (482)
269 PRK14086 dnaA chromosomal repl 98.8 2.4E-09 5.2E-14 130.4 2.1 136 706-848 317-461 (617)
270 TIGR02974 phageshock_pspF psp 98.8 1.5E-08 3.4E-13 117.4 8.7 193 381-603 1-233 (329)
271 TIGR01817 nifA Nif-specific re 98.8 1.5E-08 3.2E-13 125.7 8.8 199 374-602 191-427 (534)
272 COG5271 MDN1 AAA ATPase contai 98.7 1.4E-07 3.1E-12 118.8 16.5 134 704-846 1544-1703(4600)
273 KOG1514 Origin recognition com 98.7 6.3E-08 1.4E-12 116.4 13.0 235 379-641 396-657 (767)
274 COG1220 HslU ATP-dependent pro 98.7 2.6E-08 5.5E-13 110.2 8.9 82 479-562 252-346 (444)
275 TIGR00602 rad24 checkpoint pro 98.7 3.5E-08 7.7E-13 122.0 11.1 207 374-604 79-329 (637)
276 TIGR00362 DnaA chromosomal rep 98.7 3.1E-09 6.7E-14 127.3 1.1 138 705-848 138-283 (405)
277 PF07728 AAA_5: AAA domain (dy 98.7 1.7E-08 3.8E-13 102.2 6.3 110 415-543 1-139 (139)
278 PRK05707 DNA polymerase III su 98.7 5.6E-08 1.2E-12 112.4 11.0 136 411-565 20-178 (328)
279 PRK11608 pspF phage shock prot 98.7 2.8E-08 6.1E-13 115.3 8.5 195 378-602 5-239 (326)
280 KOG0008 Transcription initiati 98.7 7.3E-09 1.6E-13 129.8 3.8 101 901-1004 1385-1485(1563)
281 TIGR00764 lon_rel lon-related 98.7 1.2E-07 2.7E-12 118.0 14.6 52 374-440 13-64 (608)
282 PF07724 AAA_2: AAA domain (Cd 98.7 4.5E-09 9.8E-14 110.3 1.4 104 704-810 4-130 (171)
283 PRK13342 recombination factor 98.7 1.5E-08 3.3E-13 121.5 5.8 126 704-848 37-166 (413)
284 COG3604 FhlA Transcriptional r 98.7 4.2E-08 9.1E-13 114.1 8.9 199 375-603 219-456 (550)
285 COG3829 RocR Transcriptional r 98.7 3.1E-08 6.6E-13 116.9 7.8 198 374-601 240-477 (560)
286 PRK14088 dnaA chromosomal repl 98.7 3.2E-09 6.9E-14 127.8 -0.4 137 705-847 132-277 (440)
287 COG1221 PspF Transcriptional r 98.7 2.5E-08 5.4E-13 116.0 6.8 203 374-605 73-311 (403)
288 PRK00149 dnaA chromosomal repl 98.7 3.6E-09 7.8E-14 128.3 -0.4 136 705-848 150-295 (450)
289 PRK08084 DNA replication initi 98.7 1.2E-08 2.6E-13 112.9 3.5 129 704-847 46-181 (235)
290 TIGR02640 gas_vesic_GvpN gas v 98.7 1.7E-08 3.7E-13 113.6 4.7 130 705-845 23-197 (262)
291 PRK15424 propionate catabolism 98.6 6E-08 1.3E-12 118.4 9.6 198 376-601 216-463 (538)
292 KOG0955 PHD finger protein BR1 98.6 8.3E-09 1.8E-13 130.8 2.2 108 896-1006 563-670 (1051)
293 TIGR02329 propionate_PrpR prop 98.6 6E-08 1.3E-12 118.6 9.3 200 375-602 208-449 (526)
294 KOG0990 Replication factor C, 98.6 4.3E-08 9.4E-13 108.3 6.8 181 374-586 36-224 (360)
295 PRK12422 chromosomal replicati 98.6 1E-08 2.2E-13 123.1 2.0 137 705-848 143-286 (445)
296 PRK05022 anaerobic nitric oxid 98.6 8.6E-08 1.9E-12 118.0 10.1 198 377-604 185-421 (509)
297 KOG2227 Pre-initiation complex 98.6 2.9E-07 6.3E-12 106.4 13.3 208 379-606 150-382 (529)
298 PF07726 AAA_3: ATPase family 98.6 4.1E-09 8.9E-14 103.2 -1.3 113 415-543 1-129 (131)
299 KOG2035 Replication factor C, 98.6 2.5E-07 5.4E-12 100.2 11.9 182 376-586 10-220 (351)
300 PTZ00112 origin recognition co 98.6 4.5E-08 9.8E-13 120.5 7.0 137 706-847 784-950 (1164)
301 PRK14956 DNA polymerase III su 98.6 5.4E-08 1.2E-12 115.9 7.5 133 705-847 42-194 (484)
302 PRK07003 DNA polymerase III su 98.6 6.3E-08 1.4E-12 119.2 8.1 134 705-848 40-193 (830)
303 PRK10820 DNA-binding transcrip 98.6 1.1E-07 2.3E-12 117.3 10.0 198 374-601 199-435 (520)
304 PF00158 Sigma54_activat: Sigm 98.6 7.4E-08 1.6E-12 100.9 7.2 122 381-529 1-143 (168)
305 TIGR03420 DnaA_homol_Hda DnaA 98.6 4.7E-08 1E-12 107.4 5.9 130 704-847 39-173 (226)
306 TIGR02928 orc1/cdc6 family rep 98.6 5.4E-08 1.2E-12 115.0 6.7 142 704-847 41-213 (365)
307 KOG2028 ATPase related to the 98.6 5.8E-08 1.3E-12 108.0 6.3 126 704-847 163-295 (554)
308 PRK00411 cdc6 cell division co 98.6 9.8E-08 2.1E-12 114.0 8.9 143 704-848 56-222 (394)
309 PHA02544 44 clamp loader, smal 98.6 4.3E-08 9.2E-13 113.5 5.5 131 705-849 45-176 (316)
310 PRK11388 DNA-binding transcrip 98.6 4.8E-08 1E-12 123.8 6.4 197 375-601 321-552 (638)
311 PRK08727 hypothetical protein; 98.6 2.2E-08 4.7E-13 110.7 2.8 129 705-847 43-176 (233)
312 PRK08903 DnaA regulatory inact 98.6 5.4E-08 1.2E-12 107.2 5.9 123 704-846 43-170 (227)
313 PRK14087 dnaA chromosomal repl 98.6 1.4E-08 3E-13 122.4 1.3 137 705-848 143-290 (450)
314 PF13177 DNA_pol3_delta2: DNA 98.6 9.1E-08 2E-12 99.8 7.1 138 383-551 1-160 (162)
315 PRK14962 DNA polymerase III su 98.6 9E-08 1.9E-12 115.7 8.1 127 704-847 37-190 (472)
316 PF00308 Bac_DnaA: Bacterial d 98.6 6.7E-09 1.5E-13 113.6 -1.5 138 706-848 37-181 (219)
317 PF01637 Arch_ATPase: Archaeal 98.6 1.2E-07 2.6E-12 103.9 8.0 183 382-587 2-227 (234)
318 PRK15429 formate hydrogenlyase 98.6 1.5E-07 3.3E-12 120.1 10.0 199 376-602 373-608 (686)
319 PRK12323 DNA polymerase III su 98.6 5.1E-08 1.1E-12 118.6 5.2 134 705-848 40-198 (700)
320 PLN03025 replication factor C 98.5 4.4E-08 9.6E-13 113.5 4.4 128 704-848 35-173 (319)
321 PRK05642 DNA replication initi 98.5 4.7E-08 1E-12 108.2 4.2 128 705-846 47-179 (234)
322 PRK13341 recombination factor 98.5 6.4E-08 1.4E-12 122.0 5.7 125 704-848 53-183 (725)
323 TIGR02903 spore_lon_C ATP-depe 98.5 1.1E-07 2.3E-12 119.0 7.5 141 704-848 176-368 (615)
324 smart00382 AAA ATPases associa 98.5 1.3E-07 2.7E-12 94.1 6.6 106 704-809 3-125 (148)
325 PRK07993 DNA polymerase III su 98.5 4.7E-07 1E-11 105.0 11.9 157 411-588 22-198 (334)
326 COG2204 AtoC Response regulato 98.5 1.6E-07 3.6E-12 111.1 8.1 198 376-603 138-374 (464)
327 PRK06871 DNA polymerase III su 98.5 5.3E-07 1.2E-11 103.7 11.9 134 411-564 22-178 (325)
328 PF05621 TniB: Bacterial TniB 98.5 1.4E-06 2.9E-11 97.8 14.7 208 382-608 37-274 (302)
329 PRK08116 hypothetical protein; 98.5 1.8E-07 4E-12 105.4 7.9 103 413-529 114-220 (268)
330 TIGR00368 Mg chelatase-related 98.5 1.9E-07 4.2E-12 113.4 8.7 149 376-555 189-394 (499)
331 cd00009 AAA The AAA+ (ATPases 98.5 8.8E-08 1.9E-12 96.2 4.7 103 704-810 20-130 (151)
332 KOG2680 DNA helicase TIP49, TB 98.5 6.8E-07 1.5E-11 97.4 11.6 114 478-608 289-414 (454)
333 KOG0745 Putative ATP-dependent 98.5 2.2E-07 4.8E-12 105.8 7.8 97 413-514 226-331 (564)
334 TIGR02031 BchD-ChlD magnesium 98.5 2.4E-07 5.3E-12 115.2 9.1 133 414-565 17-174 (589)
335 TIGR02902 spore_lonB ATP-depen 98.5 1.1E-07 2.3E-12 117.3 5.6 141 704-848 87-278 (531)
336 COG3829 RocR Transcriptional r 98.5 8.2E-08 1.8E-12 113.3 4.4 135 705-849 270-433 (560)
337 PRK06620 hypothetical protein; 98.5 1.1E-07 2.3E-12 103.8 4.7 115 704-847 45-161 (214)
338 PRK08769 DNA polymerase III su 98.5 7.7E-07 1.7E-11 102.2 12.0 137 411-563 24-183 (319)
339 PRK06964 DNA polymerase III su 98.5 2.7E-07 5.9E-12 106.8 8.3 138 411-564 19-203 (342)
340 smart00350 MCM minichromosome 98.5 2.8E-07 6E-12 113.3 8.3 165 380-565 204-400 (509)
341 KOG0989 Replication factor C, 98.5 4.1E-07 8.9E-12 100.2 8.6 134 704-847 58-202 (346)
342 PRK14960 DNA polymerase III su 98.5 1.8E-07 4E-12 114.2 6.3 127 705-848 39-192 (702)
343 COG2204 AtoC Response regulato 98.4 1.1E-07 2.4E-12 112.6 4.1 138 705-848 166-327 (464)
344 PRK07764 DNA polymerase III su 98.4 2.2E-07 4.7E-12 118.7 7.0 133 705-848 39-194 (824)
345 PRK14961 DNA polymerase III su 98.4 3E-07 6.4E-12 108.5 7.3 134 705-848 40-193 (363)
346 TIGR01650 PD_CobS cobaltochela 98.4 1.2E-07 2.5E-12 108.1 3.5 134 704-844 65-231 (327)
347 PRK07940 DNA polymerase III su 98.4 2.5E-07 5.3E-12 109.4 6.2 130 704-843 37-186 (394)
348 COG1219 ClpX ATP-dependent pro 98.4 2.8E-07 6E-12 101.6 6.0 90 704-794 98-202 (408)
349 COG0714 MoxR-like ATPases [Gen 98.4 1.6E-07 3.5E-12 109.4 4.5 130 704-840 44-196 (329)
350 PRK12402 replication factor C 98.4 3.4E-07 7.3E-12 106.9 7.1 135 704-848 37-199 (337)
351 COG1239 ChlI Mg-chelatase subu 98.4 8.8E-07 1.9E-11 102.2 9.9 164 375-567 13-234 (423)
352 KOG1969 DNA replication checkp 98.4 3.3E-07 7.1E-12 110.4 6.4 131 705-848 328-483 (877)
353 smart00763 AAA_PrkA PrkA AAA d 98.4 9.5E-07 2.1E-11 101.8 9.9 56 376-439 47-104 (361)
354 PRK14963 DNA polymerase III su 98.4 5.4E-07 1.2E-11 109.8 8.4 126 706-848 39-190 (504)
355 PRK06526 transposase; Provisio 98.4 8.5E-07 1.8E-11 99.1 9.1 75 412-490 97-172 (254)
356 KOG1472 Histone acetyltransfer 98.4 1.3E-07 2.9E-12 115.4 2.5 80 913-994 301-380 (720)
357 PRK08181 transposase; Validate 98.4 1.3E-06 2.8E-11 98.1 10.2 103 412-529 105-208 (269)
358 PRK14949 DNA polymerase III su 98.4 4.2E-07 9.1E-12 114.2 6.8 131 706-848 41-193 (944)
359 PRK14958 DNA polymerase III su 98.4 3.5E-07 7.5E-12 111.8 5.9 127 705-848 40-193 (509)
360 PRK12377 putative replication 98.4 1.6E-06 3.6E-11 96.2 10.6 103 413-529 101-205 (248)
361 PF07728 AAA_5: AAA domain (dy 98.4 5E-08 1.1E-12 98.8 -1.4 99 705-810 1-124 (139)
362 PRK06645 DNA polymerase III su 98.4 6.4E-07 1.4E-11 108.8 7.6 135 704-848 44-202 (507)
363 PLN03210 Resistant to P. syrin 98.3 2.5E-06 5.4E-11 115.0 13.9 208 338-588 155-389 (1153)
364 PRK06090 DNA polymerase III su 98.3 1.5E-06 3.3E-11 99.7 10.0 134 411-563 23-178 (319)
365 PRK07994 DNA polymerase III su 98.3 6.5E-07 1.4E-11 111.0 7.5 133 705-848 40-193 (647)
366 COG0593 DnaA ATPase involved i 98.3 1.9E-07 4.2E-12 109.0 2.3 134 706-847 116-258 (408)
367 KOG0745 Putative ATP-dependent 98.3 5.8E-07 1.3E-11 102.5 6.0 90 704-794 227-331 (564)
368 TIGR02915 PEP_resp_reg putativ 98.3 8.1E-07 1.7E-11 108.0 7.7 195 377-601 137-370 (445)
369 PRK14964 DNA polymerase III su 98.3 5.6E-07 1.2E-11 108.5 6.2 128 704-848 36-190 (491)
370 PRK05563 DNA polymerase III su 98.3 6.2E-07 1.3E-11 111.0 6.7 127 705-848 40-193 (559)
371 COG1484 DnaC DNA replication p 98.3 2.2E-06 4.9E-11 95.8 10.5 74 412-489 104-179 (254)
372 TIGR02397 dnaX_nterm DNA polym 98.3 6.1E-07 1.3E-11 105.6 5.9 135 704-848 37-191 (355)
373 PRK07952 DNA replication prote 98.3 2.8E-06 6.1E-11 94.1 10.8 73 414-490 100-175 (244)
374 PRK14952 DNA polymerase III su 98.3 6.9E-07 1.5E-11 110.1 6.6 133 706-848 38-192 (584)
375 PRK08691 DNA polymerase III su 98.3 7.6E-07 1.7E-11 109.9 6.7 134 705-848 40-193 (709)
376 PF12775 AAA_7: P-loop contain 98.3 5.5E-07 1.2E-11 101.7 4.8 143 411-567 31-195 (272)
377 PRK09862 putative ATP-dependen 98.3 1E-06 2.2E-11 106.6 7.4 149 376-555 188-391 (506)
378 PRK14970 DNA polymerase III su 98.3 1.7E-06 3.7E-11 102.4 9.2 132 704-848 40-182 (367)
379 PRK09087 hypothetical protein; 98.3 4.8E-07 1E-11 99.5 4.1 120 705-848 46-168 (226)
380 PHA02244 ATPase-like protein 98.3 5.2E-07 1.1E-11 103.8 4.5 120 705-835 121-263 (383)
381 PF03215 Rad17: Rad17 cell cyc 98.3 2.7E-06 5.9E-11 103.7 10.9 209 373-604 13-269 (519)
382 PRK08699 DNA polymerase III su 98.3 1.5E-06 3.3E-11 100.5 8.3 137 411-563 19-183 (325)
383 PRK09183 transposase/IS protei 98.3 2.5E-06 5.5E-11 95.8 9.6 105 411-529 100-205 (259)
384 COG3604 FhlA Transcriptional r 98.3 6.2E-07 1.3E-11 104.6 4.6 132 705-842 248-403 (550)
385 PRK06921 hypothetical protein; 98.3 2.4E-06 5.1E-11 96.3 9.2 72 412-488 116-188 (266)
386 PRK14951 DNA polymerase III su 98.3 1E-06 2.3E-11 109.0 6.8 134 705-848 40-198 (618)
387 PRK14959 DNA polymerase III su 98.3 9.3E-07 2E-11 108.7 6.2 134 704-848 39-193 (624)
388 PRK14957 DNA polymerase III su 98.3 1.2E-06 2.6E-11 107.1 7.1 134 705-848 40-193 (546)
389 TIGR00678 holB DNA polymerase 98.3 8.4E-07 1.8E-11 94.8 5.0 131 704-844 15-166 (188)
390 PRK11331 5-methylcytosine-spec 98.2 5.3E-07 1.2E-11 106.4 3.6 115 704-824 195-350 (459)
391 KOG1051 Chaperone HSP104 and r 98.2 2.7E-06 5.9E-11 107.3 10.0 131 379-529 562-710 (898)
392 PRK06305 DNA polymerase III su 98.2 1.5E-06 3.3E-11 105.0 7.4 133 704-848 40-195 (451)
393 PRK06835 DNA replication prote 98.2 2.7E-06 6E-11 98.3 8.9 103 413-529 183-288 (329)
394 PRK05896 DNA polymerase III su 98.2 1.3E-06 2.7E-11 107.0 6.3 133 705-848 40-193 (605)
395 TIGR02974 phageshock_pspF psp 98.2 8.6E-07 1.9E-11 102.9 4.4 136 705-849 24-186 (329)
396 PRK08939 primosomal protein Dn 98.2 3.8E-06 8.2E-11 96.4 9.5 74 412-489 155-229 (306)
397 PRK07133 DNA polymerase III su 98.2 2.1E-06 4.5E-11 107.1 7.8 134 705-848 42-192 (725)
398 PRK14965 DNA polymerase III su 98.2 1.4E-06 3E-11 108.5 6.3 133 705-848 40-193 (576)
399 COG1474 CDC6 Cdc6-related prot 98.2 1.6E-06 3.5E-11 101.6 5.9 140 704-848 43-205 (366)
400 COG0606 Predicted ATPase with 98.2 4.9E-07 1.1E-11 105.7 1.4 48 375-437 175-222 (490)
401 PRK13407 bchI magnesium chelat 98.2 1.8E-06 3.9E-11 99.8 5.8 76 765-846 129-216 (334)
402 PRK13765 ATP-dependent proteas 98.2 2.8E-06 6.1E-11 105.7 7.9 51 374-439 26-76 (637)
403 PRK14969 DNA polymerase III su 98.2 1.9E-06 4.2E-11 106.0 6.0 134 705-848 40-193 (527)
404 KOG0008 Transcription initiati 98.2 5E-07 1.1E-11 113.8 0.9 98 899-999 1262-1359(1563)
405 COG1221 PspF Transcriptional r 98.2 1.9E-06 4.1E-11 100.6 5.6 133 705-848 103-262 (403)
406 KOG0386 Chromatin remodeling c 98.2 1E-06 2.2E-11 108.9 3.4 88 913-1003 1045-1132(1157)
407 PF14532 Sigma54_activ_2: Sigm 98.2 1.7E-06 3.7E-11 87.7 4.5 90 411-528 19-108 (138)
408 KOG1828 IRF-2-binding protein 98.2 6.8E-07 1.5E-11 100.2 1.7 92 905-999 26-117 (418)
409 PRK11608 pspF phage shock prot 98.2 1.2E-06 2.6E-11 101.7 3.8 139 705-849 31-193 (326)
410 PRK13531 regulatory ATPase Rav 98.1 2.6E-06 5.7E-11 101.4 6.6 24 704-727 40-63 (498)
411 PRK08116 hypothetical protein; 98.1 6.8E-07 1.5E-11 100.8 1.6 107 704-815 115-226 (268)
412 TIGR02655 circ_KaiC circadian 98.1 2.1E-05 4.5E-10 96.3 14.6 41 409-449 17-58 (484)
413 PF01695 IstB_IS21: IstB-like 98.1 1.8E-06 3.9E-11 91.4 4.6 103 412-529 46-149 (178)
414 PRK06647 DNA polymerase III su 98.1 2.4E-06 5.2E-11 105.5 6.2 131 705-847 40-192 (563)
415 PRK10820 DNA-binding transcrip 98.1 2.5E-06 5.3E-11 105.3 6.1 135 705-848 229-390 (520)
416 PF00158 Sigma54_activat: Sigm 98.1 1.3E-06 2.9E-11 91.4 3.3 106 705-823 24-155 (168)
417 PRK14953 DNA polymerase III su 98.1 2.7E-06 5.8E-11 103.5 6.3 134 705-848 40-193 (486)
418 TIGR02329 propionate_PrpR prop 98.1 1.8E-06 4E-11 105.7 4.8 141 705-850 237-401 (526)
419 PRK00440 rfc replication facto 98.1 5.7E-06 1.2E-10 95.8 8.7 128 704-848 39-176 (319)
420 PRK10923 glnG nitrogen regulat 98.1 2.5E-06 5.5E-11 104.4 5.9 196 377-602 136-370 (469)
421 PRK14948 DNA polymerase III su 98.1 3.5E-06 7.5E-11 105.2 7.0 134 704-847 39-194 (620)
422 TIGR01817 nifA Nif-specific re 98.1 1.7E-06 3.8E-11 107.4 4.3 131 705-848 221-382 (534)
423 CHL00081 chlI Mg-protoporyphyr 98.1 5.7E-06 1.2E-10 95.9 8.3 77 764-846 144-232 (350)
424 PRK11388 DNA-binding transcrip 98.1 1.7E-06 3.6E-11 109.9 4.2 140 705-849 350-509 (638)
425 PRK08181 transposase; Validate 98.1 7.4E-07 1.6E-11 100.1 0.9 107 704-816 107-215 (269)
426 PF13173 AAA_14: AAA domain 98.1 1.3E-05 2.7E-10 80.3 9.7 71 414-489 3-73 (128)
427 PF05729 NACHT: NACHT domain 98.1 1.8E-05 3.9E-10 81.8 10.7 145 415-567 2-165 (166)
428 PRK05022 anaerobic nitric oxid 98.1 2.6E-06 5.5E-11 105.1 4.7 134 705-847 212-372 (509)
429 KOG1827 Chromatin remodeling c 98.1 1.3E-06 2.8E-11 105.4 1.9 82 915-999 75-156 (629)
430 PRK15429 formate hydrogenlyase 98.1 2.5E-06 5.4E-11 109.1 4.4 139 705-849 401-563 (686)
431 PRK15424 propionate catabolism 98.1 2.8E-06 6.2E-11 104.0 4.4 136 705-849 244-415 (538)
432 PF05673 DUF815: Protein of un 98.0 9.9E-06 2.2E-10 88.3 8.0 161 651-848 21-209 (249)
433 PRK15115 response regulator Gl 98.0 5.4E-06 1.2E-10 100.7 6.5 170 413-601 157-365 (444)
434 PRK09302 circadian clock prote 98.0 3.7E-05 8E-10 95.1 13.8 41 409-449 27-68 (509)
435 PRK05917 DNA polymerase III su 98.0 2E-05 4.3E-10 89.0 9.9 123 411-552 17-154 (290)
436 PRK11361 acetoacetate metaboli 98.0 9.6E-06 2.1E-10 98.9 7.9 195 377-601 141-374 (457)
437 PF13401 AAA_22: AAA domain; P 98.0 2.2E-05 4.7E-10 78.3 9.0 91 413-513 4-113 (131)
438 PRK06526 transposase; Provisio 98.0 1.6E-06 3.5E-11 96.9 0.9 101 704-814 99-205 (254)
439 PRK09111 DNA polymerase III su 98.0 8.6E-06 1.9E-10 101.1 7.4 133 705-848 48-206 (598)
440 PRK05707 DNA polymerase III su 98.0 5.3E-06 1.2E-10 96.1 4.8 131 704-844 23-176 (328)
441 TIGR01818 ntrC nitrogen regula 98.0 1.2E-05 2.6E-10 98.3 7.9 196 379-603 134-367 (463)
442 PF00931 NB-ARC: NB-ARC domain 98.0 3.6E-05 7.9E-10 87.7 11.3 157 411-587 17-195 (287)
443 COG1484 DnaC DNA replication p 98.0 2.3E-06 5E-11 95.7 1.2 104 704-816 106-215 (254)
444 PRK08451 DNA polymerase III su 98.0 1.1E-05 2.4E-10 98.2 7.2 132 705-848 38-191 (535)
445 PRK14950 DNA polymerase III su 98.0 1E-05 2.2E-10 101.2 6.9 134 705-848 40-194 (585)
446 PTZ00111 DNA replication licen 98.0 6.4E-06 1.4E-10 104.2 5.0 165 380-561 451-653 (915)
447 PRK14955 DNA polymerase III su 97.9 7.8E-06 1.7E-10 97.7 5.3 131 705-847 40-200 (397)
448 COG0470 HolB ATPase involved i 97.9 1.3E-05 2.8E-10 93.0 6.9 102 706-816 27-155 (325)
449 PRK12377 putative replication 97.9 2.1E-06 4.6E-11 95.3 0.3 104 704-816 102-212 (248)
450 PRK14954 DNA polymerase III su 97.9 1.4E-05 2.9E-10 99.6 6.6 131 705-847 40-200 (620)
451 TIGR02237 recomb_radB DNA repa 97.9 4.2E-05 9E-10 83.1 9.4 83 409-491 8-111 (209)
452 PF14532 Sigma54_activ_2: Sigm 97.9 5.2E-06 1.1E-10 84.2 2.0 90 705-814 23-114 (138)
453 KOG2170 ATPase of the AAA+ sup 97.9 8.1E-05 1.7E-09 82.3 11.2 105 380-490 83-191 (344)
454 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00012 2.6E-09 86.6 13.2 60 375-440 78-137 (634)
455 PF03969 AFG1_ATPase: AFG1-lik 97.9 2.5E-05 5.5E-10 91.5 7.8 106 410-529 59-167 (362)
456 TIGR02030 BchI-ChlI magnesium 97.9 1.9E-05 4.2E-10 91.5 6.8 77 764-846 131-219 (337)
457 PRK14971 DNA polymerase III su 97.9 2.1E-05 4.5E-10 98.4 7.2 127 705-848 41-195 (614)
458 PRK09183 transposase/IS protei 97.9 2.8E-06 6E-11 95.4 -0.6 107 704-815 103-211 (259)
459 PRK08939 primosomal protein Dn 97.8 2.2E-06 4.7E-11 98.3 -1.6 106 704-815 157-266 (306)
460 PF07726 AAA_3: ATPase family 97.8 7.7E-07 1.7E-11 87.4 -4.5 101 705-810 1-113 (131)
461 PF01695 IstB_IS21: IstB-like 97.8 7.6E-07 1.6E-11 94.3 -5.2 103 704-816 48-156 (178)
462 TIGR02915 PEP_resp_reg putativ 97.8 1.1E-05 2.4E-10 98.1 4.1 142 705-848 164-325 (445)
463 cd01120 RecA-like_NTPases RecA 97.8 3.7E-05 8E-10 79.0 7.4 76 416-491 2-99 (165)
464 TIGR02031 BchD-ChlD magnesium 97.8 1.8E-05 4E-10 98.7 5.9 137 704-847 17-175 (589)
465 PRK06921 hypothetical protein; 97.8 6.5E-06 1.4E-10 92.8 1.6 106 704-815 118-230 (266)
466 KOG1474 Transcription initiati 97.8 6.2E-06 1.3E-10 103.4 1.4 93 909-1004 3-97 (640)
467 PRK07952 DNA replication prote 97.8 4E-06 8.6E-11 92.9 -0.9 106 705-816 101-211 (244)
468 smart00350 MCM minichromosome 97.8 1.3E-05 2.9E-10 98.6 3.2 133 705-848 238-402 (509)
469 TIGR00602 rad24 checkpoint pro 97.8 7.1E-05 1.5E-09 93.2 9.4 138 705-848 112-289 (637)
470 TIGR02442 Cob-chelat-sub cobal 97.8 1.8E-05 3.8E-10 99.9 4.2 133 704-846 26-214 (633)
471 PRK10923 glnG nitrogen regulat 97.8 2.2E-05 4.9E-10 96.1 5.0 137 705-850 163-326 (469)
472 PRK06835 DNA replication prote 97.7 5.6E-06 1.2E-10 95.7 -0.4 104 704-815 184-294 (329)
473 PRK13406 bchD magnesium chelat 97.7 6E-05 1.3E-09 93.4 8.6 174 414-606 26-233 (584)
474 PRK10365 transcriptional regul 97.7 5.5E-05 1.2E-09 91.8 7.7 171 412-601 161-370 (441)
475 KOG0991 Replication factor C, 97.7 3.4E-05 7.3E-10 81.9 4.8 81 704-788 49-137 (333)
476 PRK07132 DNA polymerase III su 97.7 0.00024 5.3E-09 81.1 11.9 128 413-563 18-160 (299)
477 PRK11361 acetoacetate metaboli 97.7 2.9E-05 6.3E-10 94.7 4.7 134 705-848 168-329 (457)
478 KOG2228 Origin recognition com 97.7 0.0001 2.2E-09 82.6 8.2 165 381-565 26-219 (408)
479 KOG0990 Replication factor C, 97.7 0.0003 6.5E-09 78.6 11.8 130 704-847 63-204 (360)
480 COG3267 ExeA Type II secretory 97.7 0.00059 1.3E-08 74.4 13.8 176 415-608 53-258 (269)
481 PRK07276 DNA polymerase III su 97.7 0.00016 3.5E-09 81.9 9.9 144 383-562 6-172 (290)
482 PF05621 TniB: Bacterial TniB 97.7 5.9E-05 1.3E-09 84.8 6.2 183 704-898 62-272 (302)
483 PF13173 AAA_14: AAA domain 97.6 3.5E-05 7.6E-10 77.1 3.8 121 705-837 4-126 (128)
484 PRK05564 DNA polymerase III su 97.6 0.0001 2.3E-09 85.3 8.2 128 705-844 28-163 (313)
485 KOG0478 DNA replication licens 97.6 4.1E-05 8.8E-10 92.2 4.8 157 380-555 430-616 (804)
486 PRK15115 response regulator Gl 97.6 3.3E-05 7.1E-10 93.9 4.2 138 705-848 159-320 (444)
487 TIGR01818 ntrC nitrogen regula 97.6 3.3E-05 7.1E-10 94.4 4.0 139 705-849 159-321 (463)
488 PRK06964 DNA polymerase III su 97.6 4.3E-05 9.3E-10 88.7 4.7 83 752-844 116-202 (342)
489 PRK07471 DNA polymerase III su 97.6 5.7E-05 1.2E-09 88.9 5.7 131 705-845 43-212 (365)
490 PHA00729 NTP-binding motif con 97.6 0.0002 4.3E-09 78.0 9.3 24 415-438 19-42 (226)
491 PF13401 AAA_22: AAA domain; P 97.6 2.1E-05 4.5E-10 78.5 1.7 100 704-808 5-126 (131)
492 PRK06851 hypothetical protein; 97.6 9.4E-05 2E-09 86.3 6.9 35 414-448 31-65 (367)
493 PRK05818 DNA polymerase III su 97.6 0.00016 3.6E-09 80.0 8.2 125 411-552 5-147 (261)
494 PF00910 RNA_helicase: RNA hel 97.6 0.00016 3.4E-09 70.1 7.2 25 416-440 1-25 (107)
495 COG3283 TyrR Transcriptional r 97.6 5.7E-05 1.2E-09 84.7 4.5 206 368-600 193-429 (511)
496 PRK09112 DNA polymerase III su 97.6 7.1E-05 1.5E-09 87.6 5.5 130 705-844 47-211 (351)
497 TIGR02012 tigrfam_recA protein 97.6 0.00014 3.1E-09 83.5 7.7 119 409-527 51-189 (321)
498 PRK08058 DNA polymerase III su 97.5 6.6E-05 1.4E-09 87.5 4.5 129 705-843 30-179 (329)
499 PRK09361 radB DNA repair and r 97.5 0.00043 9.2E-09 76.2 10.2 42 409-450 19-60 (225)
500 PRK10365 transcriptional regul 97.5 6.5E-05 1.4E-09 91.2 4.0 139 705-849 164-326 (441)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-83 Score=729.33 Aligned_cols=492 Identities=32% Similarity=0.502 Sum_probs=444.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
++++|.+|||++.++.+|.+++.. +.+|+.|..+|+.||+|||||||||||||+||+|||.+++ ++|+.+++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~isApe 258 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-----VPFLSISAPE 258 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-----CceEeecchh
Confidence 367999999999999999999988 9999999999999999999999999999999999999996 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccC----CcEEEEccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR----GQVVLIGATNR 529 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~----~~viVI~atn~ 529 (1205)
+++.+.|++++.++.+|++|....||||||||||++.|+|...+..+..+++.|||..||++... ..|+||||||+
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998654 57999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000973 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
|+.||++|+|+|||++.|.+..|+..+|.+||+.+++++.+...-+. ..||..|.||+|+||.+||.+|+..|+.|...
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~-~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF-KQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH-HHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888775554 79999999999999999999999999998765
Q ss_pred ceec-------c-C--------CceEE----------e--------------------ccceeeeehhhhhhhcccCccc
Q 000973 610 QVYT-------S-D--------DKFLI----------D--------------------VDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 610 ~i~~-------~-~--------~~~~~----------d--------------------~~~~~It~~df~~al~~i~ps~ 643 (1205)
.... + + ++..+ + .....|+.+||..|+..++|++
T Consensus 418 ~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSa 497 (802)
T KOG0733|consen 418 QSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSA 497 (802)
T ss_pred cccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcch
Confidence 3331 0 0 00000 0 0123578899999999999999
Q ss_pred cccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhh
Q 000973 644 HRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAI 723 (1205)
Q Consensus 644 ~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~al 723 (1205)
.|......+.+.|.++++|++.-.++..+ |..++++++.|+++|+. .|.|+|||||||||||+||||+
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~a---I~~PiK~pd~~k~lGi~---------~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMA---ILAPIKRPDLFKALGID---------APSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHH---HhhhccCHHHHHHhCCC---------CCCceEEeCCCCccHHHHHHHH
Confidence 99999999999999999998877766655 44578889999998753 2469999999999999999999
Q ss_pred hhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcC
Q 000973 724 LHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP 796 (1205)
Q Consensus 724 a~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~ 796 (1205)
|++. +++|+++.+++|+.+| +|++|.+++++|..|+..+||||||||||+|.+. ++.+++++||+.||+++
T Consensus 566 ANEa-g~NFisVKGPELlNkY-VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 566 ANEA-GANFISVKGPELLNKY-VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred hhhc-cCceEeecCHHHHHHH-hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc
Confidence 9998 9999999999999998 8999999999999999999999999999999843 78899999999999999
Q ss_pred CCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 000973 797 SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (1205)
Q Consensus 797 ~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~ 874 (1205)
.+.+|+|||+||+| +.+|+ +.+|+|| .+++|++|+.++|..|++.+.++. ..+...+++|++|+..+
T Consensus 644 ~R~gV~viaATNRP-DiIDp--AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~--------k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 644 ERRGVYVIAATNRP-DIIDP--AILRPGRLDKLLYVGLPNAEERVAILKTITKNT--------KPPLSSDVDLDEIARNT 712 (802)
T ss_pred cccceEEEeecCCC-cccch--hhcCCCccCceeeecCCCHHHHHHHHHHHhccC--------CCCCCcccCHHHHhhcc
Confidence 99999999999999 99999 8899988 899999999999999999999751 23557889999999873
Q ss_pred CccCCCchhhhhHhH-HHHHHHHHH
Q 000973 875 TVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 875 ~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
...||+||+|.+++ ++...++++
T Consensus 713 -~c~gftGADLaaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 713 -KCEGFTGADLAALVREASILALRE 736 (802)
T ss_pred -cccCCchhhHHHHHHHHHHHHHHH
Confidence 24599999999999 999999887
No 2
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-78 Score=737.92 Aligned_cols=913 Identities=41% Similarity=0.580 Sum_probs=669.6
Q ss_pred CCCCcchhhccccccccccccccCCcccccccccccccCCCCccccccccCCCCcccCCCCCCCCCCccccccccCCccc
Q 000973 251 RPRSPRRVLHQGIGTKVGRDVRKGGSRVLKRHRLARAEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLEMHGTTA 330 (1205)
Q Consensus 251 ~~~spr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1205)
...+|.+..+++... +++ +.+...+++.+........++...+..-...-..+.|+.+.+..+|...+........
T Consensus 141 ~~~~~~~~~r~~~~~-~~~---~~~~~~~~r~~~~~~~~~~~s~~~~~~~p~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 216 (1080)
T KOG0732|consen 141 LENSPARLERQRSNN-DSR---RTGRHPCRRANGCRSDSINDSDSRDHVPPGGRQLTKRGQVQSRLHMHKSSGDTERSRS 216 (1080)
T ss_pred hhcChHHHhhccccc-ccC---CCCCCcccccccccccccccccchhccCCCCchhhhhhhhcccccccccccchhhhhh
Confidence 344565555555554 222 3333344444443333344444455544444445678888888888766555544444
Q ss_pred cccccccccCccccchhHHHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhccccccccccccccc
Q 000973 331 WGLNVAASGWGHQGDTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI 410 (1205)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~ 410 (1205)
.......++|+.+.........+.+.........++++|+.++..++|++|||++.++.+|+++|.+||.||++|..+++
T Consensus 217 ~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i 296 (1080)
T KOG0732|consen 217 LRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKEADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI 296 (1080)
T ss_pred hhhhhcccccccchhhhhhhcCccccchhhcccccccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc
Confidence 33444567888887777777777777777777779999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
.||+|||||||||||||++|+++|..|.....++.|+..++++++++|+|+.+++++.+|++|+..+|+|||+||||.|+
T Consensus 297 tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGla 376 (1080)
T KOG0732|consen 297 TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLA 376 (1080)
T ss_pred CCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEecccccccc
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCC
Q 000973 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ 570 (1205)
Q Consensus 491 ~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~ 570 (1205)
|.++..+++.+..++.+||.+|+++..++.|+||||||+++.+|++|+|||||++.++|++|+.+.|..|+.++..+|..
T Consensus 377 pvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~ 456 (1080)
T KOG0732|consen 377 PVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP 456 (1080)
T ss_pred ccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccceec
Q 000973 571 PPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVH 650 (1205)
Q Consensus 571 ~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~~ 650 (1205)
.+...++..||..+.||.|+||+.+|.+|++.++++.+++++.+.+++.++...+.+...||..|+..+.|+..|...+.
T Consensus 457 ~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~ 536 (1080)
T KOG0732|consen 457 PISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIF 536 (1080)
T ss_pred CCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccchhhhhHHH-HHHHHHhhhhhhcCCCCccchhhhhhhhcccCC--cccccccceeeeecCCCCCCCccchhhhhhc
Q 000973 651 SRPLSLVVAPCLQ-RHLQKAMNYISDIFPPLGMSSELTKLCMLSHGS--AIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 651 ~~~~~~~~i~~l~-~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~--~~P~~~~~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
..+++....++|. ....+.+..+..+...+........+.+..+.. ..++.+++++|+.|..|.|.+++++||.|.+
T Consensus 537 s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~ 616 (1080)
T KOG0732|consen 537 SRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRL 616 (1080)
T ss_pred CCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHH
Confidence 8888766655552 222233333333333333344444555555555 7788899999999999999999999999999
Q ss_pred ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccC
Q 000973 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSS 807 (1205)
Q Consensus 728 ~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIatt 807 (1205)
.++++.+++.+.++++.-.++.+..+.++|.+|++.+||||||+.+|.|.......+...|...|........|..+-|-
T Consensus 617 ~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s~~~~~~~~l~~~~~~t~i~e~~t~ 696 (1080)
T KOG0732|consen 617 EGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVSFLEEFLSSLDEKALSTPILELHTW 696 (1080)
T ss_pred hccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcchhhhcchhcchhhhhccchhhhccc
Confidence 99999999999999886568889999999999999999999999999999888888888888888866666666665443
Q ss_pred CcCCccccCCCccccCC-CceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhh
Q 000973 808 SVPLAEVEGDPSTVFPL-RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELK 886 (1205)
Q Consensus 808 n~~~~~Ld~~~~~~f~~-r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk 886 (1205)
+.- ++.. ..++.+..|..+.+..+|+.+|++....+...+.+++. .++.+|.++...+.....+..
T Consensus 697 ~~~----------~~~~~~~~~t~~~p~~~s~~~ff~r~I~~~~~~~~~~~~k~~~---~~~~~p~v~~d~~~t~~~~~~ 763 (1080)
T KOG0732|consen 697 DTS----------FESVNKSVVTLSKPSAESTGAFFKRLIRKISQEPSGEAGKRPR---PLPELPKVAKDSEFTELDESK 763 (1080)
T ss_pred ccc----------ccccCccccccccchhhhhHHHHHHHHHHHhhhhhccccCCCC---cccccccccCCccccchhhhh
Confidence 322 2222 37888999999999999999999764433333332222 677888887666666666666
Q ss_pred HhHHHHHH-HHHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCc--chHHHHHhhccCCceeeeccccccc
Q 000973 887 AKVEAEQH-ALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNP--MDLATLLQRVDSGHYVTCSAFLQDV 963 (1205)
Q Consensus 887 ~~~ea~~~-alrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~P--MDL~tI~~kl~~~~Y~s~~ef~~Dv 963 (1205)
...++... ..+.+++++..++. ..+...+......+|+.++..| |++..+.+++..|.|.++.+|+.|+
T Consensus 764 ~~~~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~ 835 (1080)
T KOG0732|consen 764 KKIEAEDLRLKNRLKIKLSDLLN--------SKPKEECQYESSDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDI 835 (1080)
T ss_pred cchhHHHHHHhhhhhccccchhc--------ccccCCccccccccceeehhhhhhHHHHHHhhcCCcccccccccccccc
Confidence 66655443 67778888877762 2333344444566777777766 6677799999999999999999999
Q ss_pred hhhhcccccccCCCCCcceeeechhhhhhhHhhhhh-ccChhHH-----HHHHHhhhcCCCccCCCCCCCCCCCCcceee
Q 000973 964 DLIVTNAKAYNGNDYNGTRIVSRGYELRDAVHGMLS-QMDPALV-----SYCDKIAAQGGPTPLPDDLGGSIFPTTPVVQ 1037 (1205)
Q Consensus 964 ~Li~~Na~~yN~~~~~~s~i~~~A~~l~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1205)
.+|..||..++..+ ....+..+...-..-+. ..+..+. -.|.+.+.+..+.......+.+.. +..|
T Consensus 836 ~li~r~a~~~~~~~-----~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~acre~~~~~~~~~~~~d~~~s~~---~~~Q 907 (1080)
T KOG0732|consen 836 KLILRDASSSEDSE-----TSSKAEEMNALAQLGVEETSDSLLAYRCKRTACREAASEVLKLLIKGDAGFSEC---ILEQ 907 (1080)
T ss_pred hhhcccchhccCch-----hhhHHHHHhhhhhcCccccccchhhhhhhhHHHHHHHHhhhhhhccccccccch---hhhh
Confidence 99999999998764 33444444443322222 2222222 234444443333222222222211 1111
Q ss_pred eccchhhhhhccccCcccccchhhHHhcCCCCCCCCCccc-chhhhhccccccccccCCcccccCCCCCccccccc----
Q 000973 1038 LGTVTRASARLRNVQPEVNLDQSYEALKRPKKSTDAPHAA-TVVEDKSRHQESVQQTKSCDDVEANDADTEMLESS---- 1112 (1205)
Q Consensus 1038 ~~~~~r~S~r~~~~~p~i~~~~~~~~~kr~K~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1112 (1205)
..--...+++.+..++++..+.-+.+..+.+.-+...+-. ..++. ..+-...++.-.+...+.+....
T Consensus 908 ~~~l~d~~~~~~~~~~~~~~~~v~~~~~~~~~~t~~~s~~~~~~~~-------~~~~~~~~~~~~d~~s~~s~~~~~v~~ 980 (1080)
T KOG0732|consen 908 ESHLEDLSARGPELQAETETTNVNNGLEKEEVTTLGVSNEIGNSKV-------NNEDSGAEEEYTDAVSTDSGADTNVDN 980 (1080)
T ss_pred hhhhhhhhhcccccccccccchhccccccCccchhccchhhccccc-------cccCccccccccccccccccccccccc
Confidence 1122223555555666665555555554444443332111 10110 00111111111111110111000
Q ss_pred -cccCCCCCCccc-ccCCCCC-CCCc--cceeecchhccccccceeeeeeeccCCCcchhHHHHHHHhhhhcccccCCC-
Q 000973 1113 -CADGNQHDAPRE-ACGLTEG-GGSQ--DVTILCGEVVQEAEPIKQLFVVRTESYGIPQLERLYTRVMKGIFDIKDRDD- 1186 (1205)
Q Consensus 1113 -~~~~~~~~~~~~-~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1186 (1205)
+.-..+.+..+- +...... .++. ..-+.+.+..-+++.|++.||++|.||.|.|||+||+.|+++|..+++.||
T Consensus 981 ~~~r~~~~e~~s~~~~~~~~~~~~s~p~p~~vve~e~~~rlk~l~~~~ve~s~n~~v~qLE~lhS~lsq~I~~~r~~~dk 1060 (1080)
T KOG0732|consen 981 ISIREAQLEANSPNSVEEAVAKDLSSPGPHEVVEKELIVRLKKLLQCLVEKSNNLNVSQLERLHSSLSQTIWRTRDEWDK 1060 (1080)
T ss_pred chhhhhhccCCCCcchhhccccccCCCCChhhccchHHHHHHHHHHHhhhhcCCccHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 111111111100 1111111 1111 122334443338999999999999999999999999999999999999877
Q ss_pred --CCchHHHHHHhhhhhhc
Q 000973 1187 --PKPSILGFLSKFAEDEA 1203 (1205)
Q Consensus 1187 --~~~~~~~~~~~~~~~~~ 1203 (1205)
....|.|+|.+|..+..
T Consensus 1061 ~~~v~~~eq~v~ef~~~~~ 1079 (1080)
T KOG0732|consen 1061 NNLVEEVEQTVKEFRTNRQ 1079 (1080)
T ss_pred cchHHHHHHHHHHhhcccC
Confidence 67788999999987754
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-72 Score=654.44 Aligned_cols=465 Identities=34% Similarity=0.529 Sum_probs=429.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
..++ .+++|+...+..+++++.+|+.++..|..+|+++|+++|+|||||||||.+++++|++.+ +.++.+++.+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~pe 253 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPE 253 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC-----ceeEecccHH
Confidence 4566 789999999999999999999999999999999999999999999999999999999985 7899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~-p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ 532 (1205)
+++++.|+++..++..|+++...+ |+||||||+|+|+|++..... ...++..+|+.+|+++...++++||++||+|+.
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 999999999999999999999999 999999999999999876655 678999999999999999999999999999999
Q ss_pred ccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCcee
Q 000973 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVY 612 (1205)
Q Consensus 533 ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~ 612 (1205)
||++++| |||++.+.+..|+..+|.+|++.++..++.. +...+..+|..+.||+|+||.++|.+|++.+.++
T Consensus 333 ld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------ 404 (693)
T KOG0730|consen 333 LDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR------ 404 (693)
T ss_pred cChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------
Confidence 9999999 9999999999999999999999999999887 4455689999999999999999999999999986
Q ss_pred ccCCceEEeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhc
Q 000973 613 TSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (1205)
Q Consensus 613 ~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~ 692 (1205)
+.++|..|+..+.|++.|...+..++++|.+|+|+++...++.+.| .-++.+++.|.++|+.
T Consensus 405 ---------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V---~~p~~~pe~F~r~Gi~ 466 (693)
T KOG0730|consen 405 ---------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAV---EWPLKHPEKFARFGIS 466 (693)
T ss_pred ---------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHH---hhhhhchHHHHHhcCC
Confidence 5678999999999999999999999999999998866555444432 2277889999988743
Q ss_pred ccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeecc
Q 000973 693 SHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (1205)
Q Consensus 693 ~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDE 772 (1205)
+++|+|||||||||||++|+|+|++. +++|+++.+++|+++| +|++|.+++++|++|+..+||||||||
T Consensus 467 ---------ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkgpEL~sk~-vGeSEr~ir~iF~kAR~~aP~IiFfDE 535 (693)
T KOG0730|consen 467 ---------PPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKGPELFSKY-VGESERAIREVFRKARQVAPCIIFFDE 535 (693)
T ss_pred ---------CCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccCHHHHHHh-cCchHHHHHHHHHHHhhcCCeEEehhh
Confidence 25799999999999999999999998 9999999999999998 799999999999999999999999999
Q ss_pred chhhHHh-------HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHH
Q 000973 773 FNLWWEN-------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 773 id~l~~~-------~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~ 843 (1205)
||++... ++++++++|++.||+++...+|+|||+||+| +.||+ +.+++|| .+++|++|+.+.|.+||+
T Consensus 536 iDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRp-d~ID~--ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 536 IDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRP-DMIDP--ALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred HHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCCh-hhcCH--HHcCCcccceeEeecCccHHHHHHHHH
Confidence 9999854 5899999999999999999999999999999 99999 8888777 899999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 844 RLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 844 ~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.+++++ +...+++|.+|++. +.|||||||..+| +|...++++
T Consensus 613 ~~~kkm----------p~~~~vdl~~La~~---T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 613 QCAKKM----------PFSEDVDLEELAQA---TEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred HHHhcC----------CCCccccHHHHHHH---hccCChHHHHHHHHHHHHHHHHH
Confidence 999864 55677899999988 8999999999999 898888877
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.2e-59 Score=589.59 Aligned_cols=489 Identities=34% Similarity=0.524 Sum_probs=417.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.+++.|++++.+|+.+|++|..+|+.+++++|||||||||||++|+++|++++ ..|+.+++.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHH
Confidence 67999999999999999999999999999999999999999999999999999999999999985 5688999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
+.+++.|+.+..++.+|..+....|+||||||||.+++.+..........++.+|+.+|+++...+.++||++||.++.|
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred HhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 99999999999999999999999999999999999998876655556678999999999998888899999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceec
Q 000973 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~ 613 (1205)
|++++++|||+..+.|+.|+.++|.+||+.++.......+. .++.++..+.||+++++..+|.+|+..++++.......
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~-~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV-DLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc-CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999888876654333 35889999999999999999999999999876431110
Q ss_pred --cCCceE-EeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhh
Q 000973 614 --SDDKFL-IDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLC 690 (1205)
Q Consensus 614 --~~~~~~-~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~ 690 (1205)
...... .-.....++..||..++..+.|+..+......+.+.|.+++++....+.+.+.+.- ++.++..+.+++
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~---~~~~~~~~~~~g 483 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEW---PLKHPEIFEKMG 483 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHh---hhhCHHHHHhcC
Confidence 000000 00123468899999999999999988888888899999999887766666554321 345555665554
Q ss_pred hcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeee
Q 000973 691 MLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 691 ~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
+ ..+.++||+||||||||++|+++|+++ +.+|+.++.++++++| +|+++.+++.+|..|+...||||||
T Consensus 484 ~---------~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~l~~~~-vGese~~i~~~f~~A~~~~p~iifi 552 (733)
T TIGR01243 484 I---------RPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPEILSKW-VGESEKAIREIFRKARQAAPAIIFF 552 (733)
T ss_pred C---------CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHhhcc-cCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 2 224689999999999999999999998 8999999999999987 8999999999999999999999999
Q ss_pred ccchhhHHh--------HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhh
Q 000973 771 PQFNLWWEN--------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~--------~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~ 840 (1205)
||||.+++. ..++++++|++.|+++....+|+||+|||+| +.||+ +.++++| .+++|++|+.++|.+
T Consensus 553 DEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~-~~ld~--allRpgRfd~~i~v~~Pd~~~R~~ 629 (733)
T TIGR01243 553 DEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRP-DILDP--ALLRPGRFDRLILVPPPDEEARKE 629 (733)
T ss_pred EChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCCh-hhCCH--hhcCCCccceEEEeCCcCHHHHHH
Confidence 999999732 4568889999999999888899999999998 89999 6665444 889999999999999
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 841 FLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
||+.++.+. ....++++..|+.. +.|+++++|.++| ++.+.++++
T Consensus 630 i~~~~~~~~----------~~~~~~~l~~la~~---t~g~sgadi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 630 IFKIHTRSM----------PLAEDVDLEELAEM---TEGYTGADIEAVCREAAMAALRE 675 (733)
T ss_pred HHHHHhcCC----------CCCccCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHH
Confidence 999877542 33456777778766 8899999999999 777777766
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-53 Score=488.66 Aligned_cols=442 Identities=22% Similarity=0.302 Sum_probs=373.8
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCccc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~ 491 (1205)
.+.+|||+||+|||||.||++++.++... ..+++..++|+.+-...+......++.+|.++.+++|+||+||++|.|++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 35689999999999999999999999744 35677788999888877888889999999999999999999999999997
Q ss_pred ccchhh--hHHHHHHHHHHH-HHhhCc-ccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccc
Q 000973 492 VRSSKQ--EQIHNSIVSTLL-ALMDGL-DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK 567 (1205)
Q Consensus 492 ~r~~~~--~~~~~~v~~~Ll-~~ld~~-~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~ 567 (1205)
..+... .......+..++ +.+..+ ..+..+.||++.+....|++.|.++++|..++.++.|...+|.+||+..+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 433222 222233333344 333332 2344578999999999999999999999999999999999999999999988
Q ss_pred cCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccc
Q 000973 568 WKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGA 647 (1205)
Q Consensus 568 ~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~ 647 (1205)
.......+.++.++..|.||...|+..++..|...++..... +... .++.++|..+|+.+.|.++|.+
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris-----------~~~k-lltke~f~ksL~~F~P~aLR~i 656 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS-----------NGPK-LLTKELFEKSLKDFVPLALRGI 656 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-----------cCcc-cchHHHHHHHHHhcChHHhhhc
Confidence 766666677788999999999999999999999999854321 1122 6899999999999999999999
Q ss_pred eecccc-cchhhhhHHHH---HHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhh
Q 000973 648 TVHSRP-LSLVVAPCLQR---HLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAI 723 (1205)
Q Consensus 648 ~~~~~~-~~~~~i~~l~~---~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~al 723 (1205)
....+. +.|.+++|+.+ .|.++++| +.+++..|... |++.+.|+|||||||||||+||.|+
T Consensus 657 k~~k~tgi~w~digg~~~~k~~l~~~i~~------P~kyp~if~~~---------plr~~~giLLyGppGcGKT~la~a~ 721 (952)
T KOG0735|consen 657 KLVKSTGIRWEDIGGLFEAKKVLEEVIEW------PSKYPQIFANC---------PLRLRTGILLYGPPGCGKTLLASAI 721 (952)
T ss_pred cccccCCCCceecccHHHHHHHHHHHHhc------cccchHHHhhC---------CcccccceEEECCCCCcHHHHHHHH
Confidence 877555 99999999854 45555555 45556555544 5666889999999999999999999
Q ss_pred hhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcC
Q 000973 724 LHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP 796 (1205)
Q Consensus 724 a~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~ 796 (1205)
|..+ ++.|+++.+|+|+++| +|.+|++++.+|.+|+...||||||||+|++++. +.++++++|++.||+.+
T Consensus 722 a~~~-~~~fisvKGPElL~Ky-IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 722 ASNS-NLRFISVKGPELLSKY-IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE 799 (952)
T ss_pred HhhC-CeeEEEecCHHHHHHH-hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc
Confidence 9998 8999999999999998 8999999999999999999999999999999954 77999999999999999
Q ss_pred CCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 000973 797 SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (1205)
Q Consensus 797 ~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~ 874 (1205)
+-.+|+|+|+|.+| +.||+ +.+|+|| +.+++++|+..+|.+||+.+-.+. ....++||+.++..
T Consensus 800 gl~GV~i~aaTsRp-dliDp--ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~----------~~~~~vdl~~~a~~- 865 (952)
T KOG0735|consen 800 GLDGVYILAATSRP-DLIDP--ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL----------LKDTDVDLECLAQK- 865 (952)
T ss_pred ccceEEEEEecCCc-cccCH--hhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc----------CCccccchHHHhhh-
Confidence 99999999999999 99999 8899988 888899999999999999888642 44668999999988
Q ss_pred CccCCCchhhhhHhH-HHHHHHHHHH
Q 000973 875 TVESGPKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 875 ~~~~g~S~aELk~~~-ea~~~alrel 899 (1205)
+.||+||+|..++ .|.+.+.++|
T Consensus 866 --T~g~tgADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 866 --TDGFTGADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred --cCCCchhhHHHHHHHHHHHHHHHH
Confidence 8999999999999 7777766663
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-52 Score=491.88 Aligned_cols=477 Identities=21% Similarity=0.275 Sum_probs=380.3
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
++-...+++..+..+..++.-+ ..|. ..++.....+||+|+||||||++++++|.+++ .+++.++|.++..
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~-~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg-----~h~~evdc~el~~ 469 (953)
T KOG0736|consen 399 NSLSPPGLEAKVLELVAVLSPQ-KQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELG-----LHLLEVDCYELVA 469 (953)
T ss_pred ccCCCccchHHHHHHHHHhCcc-cCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhC-----CceEeccHHHHhh
Confidence 3344567777766555554331 2222 22334456799999999999999999999996 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhh---CcccCCcEEEEccccccccc
Q 000973 457 KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD---GLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 457 ~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld---~~~~~~~viVI~atn~~~~l 533 (1205)
...+..+..+..+|..|+...|+||||-++|.|......+ ...+++..+...|. .......++||++++..+.+
T Consensus 470 ~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg---ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~l 546 (953)
T KOG0736|consen 470 ESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG---EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDL 546 (953)
T ss_pred cccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc---hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccC
Confidence 9899999999999999999999999999999997443332 23334444433333 33356789999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC----
Q 000973 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP---- 609 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~---- 609 (1205)
++.+++ -|..+|.++.|+.++|.+||+.++....+.-... +..+|.+|.||+.+++..++..+...+..+...
T Consensus 547 p~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~-~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~ 623 (953)
T KOG0736|consen 547 PADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN-LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLA 623 (953)
T ss_pred CHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHH-HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccc
Confidence 999998 6778999999999999999999998876544333 378999999999999999987764444333221
Q ss_pred ceeccCCceEEeccceeeeehhhhhhhcccCcccccccee-cccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhh
Q 000973 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATV-HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTK 688 (1205)
Q Consensus 610 ~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~-~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~ 688 (1205)
...+..+...+......++++||..++.+++......... ..+.+.|++++||++...++++.|+ -++.+++.|..
T Consensus 624 g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIq---lPL~hpeLfss 700 (953)
T KOG0736|consen 624 GGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQ---LPLKHPELFSS 700 (953)
T ss_pred ccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhc---CcccChhhhhc
Confidence 1122223333445557899999999999887655544433 3788899999999999999988753 25666655432
Q ss_pred hhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCcee
Q 000973 689 LCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSIL 768 (1205)
Q Consensus 689 l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~IL 768 (1205)
.+++|.|+|||||||||||++|||+|.++ .+.|+++.+|+|+..| +|++|+++|++|++|+.++||||
T Consensus 701 ----------glrkRSGILLYGPPGTGKTLlAKAVATEc-sL~FlSVKGPELLNMY-VGqSE~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 701 ----------GLRKRSGILLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPELLNMY-VGQSEENVREVFERARSAAPCVI 768 (953)
T ss_pred ----------cccccceeEEECCCCCchHHHHHHHHhhc-eeeEEeecCHHHHHHH-hcchHHHHHHHHHHhhccCCeEE
Confidence 24557899999999999999999999999 8999999999999877 89999999999999999999999
Q ss_pred eeccchhhHHh---------HHHHHHHHHHHHHHhcC--CCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCC-
Q 000973 769 YIPQFNLWWEN---------AHEQLRAVLLTLLEELP--SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPS- 834 (1205)
Q Consensus 769 fiDEid~l~~~---------~~~~~~~~ll~lL~~~~--~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~- 834 (1205)
||||+|++++. +-++++.+|+..||+|. +...||||||||+| +.||+ +.+++|| +.+++.++.
T Consensus 769 FFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP-DLLDp--ALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 769 FFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP-DLLDP--ALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred EeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc-cccCh--hhcCCCccceeEEecCCcc
Confidence 99999999843 67899999999999997 57899999999999 99999 7778777 888888774
Q ss_pred ccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 835 TEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 835 ~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.+.+.++++.+.+++ +...+++|.++++.. ++.++||++-++| .|.+.++++
T Consensus 846 ~esk~~vL~AlTrkF----------kLdedVdL~eiAk~c--p~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 846 AESKLRVLEALTRKF----------KLDEDVDLVEIAKKC--PPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred HHHHHHHHHHHHHHc----------cCCCCcCHHHHHhhC--CcCCchhHHHHHHHHHHHHHHHH
Confidence 577888999999885 778889999999886 4568999999999 777777655
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-47 Score=462.52 Aligned_cols=466 Identities=38% Similarity=0.554 Sum_probs=394.5
Q ss_pred ccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhc
Q 000973 397 FPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN 476 (1205)
Q Consensus 397 ~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~ 476 (1205)
+|+.+++.++.+++.++.+++++||||||||++++++|.. . ..++.+++....+++.|+.+..++.+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G-----AEFLSINGPEILSKYVGESELRLRELFEEAEKL 75 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c-----CcccccCcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3677889999999999999999999999999999999998 2 233788899999999999999999999999999
Q ss_pred CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchh
Q 000973 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (1205)
Q Consensus 477 ~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~ee 556 (1205)
.|+++++|++|.+++.+..........++.+|+..++++. .+.+++++.+|.+..+++++++++||+..+.+..|+...
T Consensus 76 ~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 76 APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred CCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 9999999999999999887666677899999999999998 555889999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhh
Q 000973 557 RAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (1205)
Q Consensus 557 r~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al 636 (1205)
+.+|+..+...+..... ..+..++..+.|+.++++..+|.++...++.+.. ........++.++|..++
T Consensus 155 ~~ei~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~----------~~~~~~~~~~~~~~~~~l 223 (494)
T COG0464 155 RLEILQIHTRLMFLGPP-GTGKTLAARTVGKSGADLGALAKEAALRELRRAI----------DLVGEYIGVTEDDFEEAL 223 (494)
T ss_pred HHHHHHHHHhcCCCccc-ccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh----------ccCcccccccHHHHHHHH
Confidence 99999988887765543 3447899999999999999999999999988853 012334568899999999
Q ss_pred cccCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCC
Q 000973 637 STITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGV 716 (1205)
Q Consensus 637 ~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGK 716 (1205)
..+.+. +......+.+.|.+++++....+.+.+.+.. ++.+++.|.+.++ ..+.|+||+|||||||
T Consensus 224 ~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~---~~~~~e~~~~~~~---------~~~~giLl~GpPGtGK 289 (494)
T COG0464 224 KKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIET---PLKRPELFRKLGL---------RPPKGVLLYGPPGTGK 289 (494)
T ss_pred HhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHh---HhhChHHHHhcCC---------CCCCeeEEECCCCCCH
Confidence 999988 6777788899999998876555555444321 3444555544332 2245899999999999
Q ss_pred CccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH-------HHHHHHHHH
Q 000973 717 DHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-------HEQLRAVLL 789 (1205)
Q Consensus 717 T~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~-------~~~~~~~ll 789 (1205)
|+||+|+|+++ +.+|++++.++++++| +|++|++++++|..|+..+||||||||+|+|+... ..+++++|+
T Consensus 290 T~lAkava~~~-~~~fi~v~~~~l~sk~-vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL 367 (494)
T COG0464 290 TLLAKAVALES-RSRFISVKGSELLSKW-VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLL 367 (494)
T ss_pred HHHHHHHHhhC-CCeEEEeeCHHHhccc-cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHH
Confidence 99999999998 8999999999999998 89999999999999999999999999999999552 258999999
Q ss_pred HHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCC
Q 000973 790 TLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSL 867 (1205)
Q Consensus 790 ~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l 867 (1205)
++|++++...+|+||+|||+| +.||+ +.++++| .+++|++|+.++|.+||+.++... ......++++
T Consensus 368 ~~~d~~e~~~~v~vi~aTN~p-~~ld~--a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~--------~~~~~~~~~~ 436 (494)
T COG0464 368 TELDGIEKAEGVLVIAATNRP-DDLDP--ALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK--------KPPLAEDVDL 436 (494)
T ss_pred HHhcCCCccCceEEEecCCCc-cccCH--hhcccCccceEeecCCCCHHHHHHHHHHHhccc--------CCcchhhhhH
Confidence 999999999999999999998 99999 7777443 899999999999999999999742 0113457788
Q ss_pred CCCCCCCCccCCCchhhhhHhH-HHHHHHHHHHH---HHHHHHhhhh
Q 000973 868 PELPKVPTVESGPKASELKAKV-EAEQHALRRLR---MCLRDVCNRM 910 (1205)
Q Consensus 868 ~~Lp~~~~~~~g~S~aELk~~~-ea~~~alrelr---~~lr~il~~l 910 (1205)
..|+.. +.++++++|...| ++.+.++++.. ..+.++...+
T Consensus 437 ~~l~~~---t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~ 480 (494)
T COG0464 437 EELAEI---TEGYSGADIAALVREAALEALREARRREVTLDDFLDAL 480 (494)
T ss_pred HHHHHH---hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHH
Confidence 888876 8899999999999 89888888874 4444444443
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-47 Score=414.79 Aligned_cols=248 Identities=45% Similarity=0.744 Sum_probs=231.9
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
-.|.+++++|||+++++++|+|.|.+||.+|++|..+|+.||+|||||||||||||+||+|+|+... ..|+.+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrvvg 218 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRVVG 218 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEecc
Confidence 3488999999999999999999999999999999999999999999999999999999999999984 89999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++|+.+|+|++...++.+|..|+...||||||||||+++.+|... ++..-++++-+||+.||++...++|-||+|||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999988543 44456778888999999999999999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+++.|||||+|||||++.|+||+|+.+.|.+||++|.+++.+..+.++ +.||..+.|+||+||.++|.+|.+.|+++..
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~-e~la~~~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL-ELLARLTEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH-HHHHHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence 999999999999999999999999999999999999999998887776 8999999999999999999999999999753
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCc
Q 000973 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~p 641 (1205)
..++++||..|..++..
T Consensus 378 ----------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ----------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ----------------CeecHHHHHHHHHHHHh
Confidence 35899999999887653
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-46 Score=427.74 Aligned_cols=287 Identities=39% Similarity=0.655 Sum_probs=258.1
Q ss_pred hHHHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChh
Q 000973 347 LAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGK 426 (1205)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGK 426 (1205)
+..+...+.++.|++++.. +..-|.|+|+||||++++..+|..+|.+|+++|++|+.+|+..|.||||||||||||
T Consensus 483 ~eDF~~Al~~iQPSakREG----F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGK 558 (802)
T KOG0733|consen 483 FEDFEEALSKIQPSAKREG----FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGK 558 (802)
T ss_pred HHHHHHHHHhcCcchhccc----ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccH
Confidence 4566777778888766533 344599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHH
Q 000973 427 TLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (1205)
Q Consensus 427 T~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~ 506 (1205)
|+||+|+|++.+ .+|+.+.|.+++++|+|+++..++.+|..|+..+||||||||||+|+|.|+........++++
T Consensus 559 TLlAKAVANEag-----~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvN 633 (802)
T KOG0733|consen 559 TLLAKAVANEAG-----ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVN 633 (802)
T ss_pred HHHHHHHhhhcc-----CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHH
Confidence 999999999995 899999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCC--chhHHHHHhhhh
Q 000973 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPP--SRELKSELAASC 584 (1205)
Q Consensus 507 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~--~~~~l~~LA~~t 584 (1205)
+||..||++..+.+|.||||||+|+.||||++|||||+..++|++|+.++|.+||+.+++.....+ +.+ ++.||..+
T Consensus 634 qLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd-l~eia~~~ 712 (802)
T KOG0733|consen 634 QLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD-LDEIARNT 712 (802)
T ss_pred HHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC-HHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999544433 344 47888876
Q ss_pred h--cccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccc
Q 000973 585 V--GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 585 ~--G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~ 643 (1205)
. ||+|+||..||++|...|+++....+..+..+..+......++..||.+|++++.|+.
T Consensus 713 ~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 713 KCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred cccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 6 9999999999999999999988766666665554444466788899999999999874
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=429.10 Aligned_cols=270 Identities=43% Similarity=0.697 Sum_probs=247.5
Q ss_pred HHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHH
Q 000973 349 ALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTL 428 (1205)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~ 428 (1205)
.+........|+..+...+ -.++++|+||||++++|.+|++.|.+|+++|+.|.++|+.+|+|||||||||||||+
T Consensus 408 ~~~~A~~~i~psa~Re~~v----e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~ 483 (693)
T KOG0730|consen 408 IFQEALMGIRPSALREILV----EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTL 483 (693)
T ss_pred HHHHHHhcCCchhhhheec----cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHH
Confidence 3444444556666555443 238999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 429 IARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 429 laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
+|+++|++++ ++|+.+.+.+++++|+|+++..++.+|+.|+...||||||||||++++.|++...+...+++++|
T Consensus 484 lAkalAne~~-----~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqL 558 (693)
T KOG0730|consen 484 LAKALANEAG-----MNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQL 558 (693)
T ss_pred HHHHHhhhhc-----CCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHH
Confidence 9999999995 89999999999999999999999999999999999999999999999999776668899999999
Q ss_pred HHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000973 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 509 l~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
|+.||++....+|+||||||+|+.||+||+|||||+..|+||+|+.+.|++||+.+++++.+..+.++ ++||..|.|||
T Consensus 559 LtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl-~~La~~T~g~S 637 (693)
T KOG0730|consen 559 LTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL-EELAQATEGYS 637 (693)
T ss_pred HHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH-HHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999988877665 89999999999
Q ss_pred chhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000973 589 GADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 589 gadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
|+||..+|++|+..|+++... ...|+.+||.++++...++
T Consensus 638 GAel~~lCq~A~~~a~~e~i~--------------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 638 GAEIVAVCQEAALLALRESIE--------------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--------------cccccHHHHHHHHHhhccc
Confidence 999999999999999998653 3458899999999988765
No 11
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-45 Score=410.61 Aligned_cols=442 Identities=27% Similarity=0.431 Sum_probs=338.9
Q ss_pred cccccccccc--cCChhHHHHHh-hhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000973 371 QVDESVSFDD--IGGLSEYIDAL-KEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 371 ~~~~~~~~~~--i~Gl~~~k~~L-~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
-+.|...|++ |||++.....| +++...-+.-|++..++|+.+-+|+|||||||||||++||.|...+.....+
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePK---- 286 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPK---- 286 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCc----
Confidence 3457788887 79999887665 4455444556899999999999999999999999999999999999754433
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHHhhc--------CCceEEEeccCCcccccchhh--hHHHHHHHHHHHHHhhCccc
Q 000973 448 MRKGADVLSKWVGEAERQLKLLFEEAQRN--------QPSIIFFDEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLDS 517 (1205)
Q Consensus 448 ~i~~~~l~~~~~g~~e~~l~~lf~~a~~~--------~p~VL~IDEid~L~~~r~~~~--~~~~~~v~~~Ll~~ld~~~~ 517 (1205)
.+++.+++++|+|+++.+++.+|..|... .=.||++||||++|..|++.. .+.+..+++|||.-||+...
T Consensus 287 IVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq 366 (744)
T KOG0741|consen 287 IVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ 366 (744)
T ss_pred ccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh
Confidence 47899999999999999999999988641 124999999999999886643 46788999999999999999
Q ss_pred CCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCC----CCchhHHHHHhhhhhcccchhHH
Q 000973 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ----PPSRELKSELAASCVGYCGADLK 593 (1205)
Q Consensus 518 ~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~----~~~~~~l~~LA~~t~G~sgadI~ 593 (1205)
-.+++|||.||+.+.||.||+|||||...+++.+|+...|++||++|...+.. ..+.+ +.+||..|..|+|++|+
T Consensus 367 LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVd-l~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 367 LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVD-LKELAALTKNFSGAELE 445 (744)
T ss_pred hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcC-HHHHHHHhcCCchhHHH
Confidence 99999999999999999999999999999999999999999999999988632 23444 48999999999999999
Q ss_pred HHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccceeccc-----ccchhhhhHHHHHHHH
Q 000973 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSR-----PLSLVVAPCLQRHLQK 668 (1205)
Q Consensus 594 ~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~-----~~~~~~i~~l~~~L~~ 668 (1205)
.+++.|...|+.|....- ..........+...|+..||..||..++|+.-........ -+.|.. ...+.+++
T Consensus 446 glVksA~S~A~nR~vk~~-~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~--~v~~il~~ 522 (744)
T KOG0741|consen 446 GLVKSAQSFAMNRHVKAG-GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGP--PVTRILDD 522 (744)
T ss_pred HHHHHHHHHHHHhhhccC-cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecc--cHHHHHhh
Confidence 999999999998875422 1111222345677899999999999999986543221111 111211 12333333
Q ss_pred HhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCC
Q 000973 669 AMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (1205)
Q Consensus 669 ~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~ 748 (1205)
-+..+.++..+-. .| -..+||.||||+|||.||--+|... .+||+.+-.++-+.+++..+
T Consensus 523 G~llv~qvk~s~~----------------s~---lvSvLl~Gp~~sGKTaLAA~iA~~S-~FPFvKiiSpe~miG~sEsa 582 (744)
T KOG0741|consen 523 GKLLVQQVKNSER----------------SP---LVSVLLEGPPGSGKTALAAKIALSS-DFPFVKIISPEDMIGLSESA 582 (744)
T ss_pred HHHHHHHhhcccc----------------Cc---ceEEEEecCCCCChHHHHHHHHhhc-CCCeEEEeChHHccCccHHH
Confidence 3333332211100 01 1369999999999999999999998 89999998888887765555
Q ss_pred hhhHHHHhhccccccCCceeeeccchhhH------HhHHHHHHHHHHHHHHhcCC-CCCeEEeccCCcCCccccC-CCcc
Q 000973 749 PEEALVHIFGEARRTTPSILYIPQFNLWW------ENAHEQLRAVLLTLLEELPS-HLPILLLGSSSVPLAEVEG-DPST 820 (1205)
Q Consensus 749 se~~~~~lf~~A~~~~p~ILfiDEid~l~------~~~~~~~~~~ll~lL~~~~~-~~~v~vIattn~~~~~Ld~-~~~~ 820 (1205)
-...+..+|..|.+..-+||++|+|+.|. +..+..++++|+-+|...++ +...+|++||+.. ..|.+ ++..
T Consensus 583 Kc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~-~vL~~m~i~~ 661 (744)
T KOG0741|consen 583 KCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR-EVLQEMGILD 661 (744)
T ss_pred HHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH-HHHHHcCHHH
Confidence 55678999999999999999999999997 44667788888888888765 6788999999986 56655 4455
Q ss_pred ccCCCceeeecCCCccchhhhHHHH
Q 000973 821 VFPLRSVYQVEKPSTEDRSLFLGRL 845 (1205)
Q Consensus 821 ~f~~r~ii~~~~P~~~eR~~i~~~~ 845 (1205)
.|. ..++|| ....-....+.+
T Consensus 662 ~F~--~~i~Vp--nl~~~~~~~~vl 682 (744)
T KOG0741|consen 662 CFS--STIHVP--NLTTGEQLLEVL 682 (744)
T ss_pred hhh--heeecC--ccCchHHHHHHH
Confidence 565 455554 443333333333
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=398.77 Aligned_cols=284 Identities=36% Similarity=0.606 Sum_probs=246.2
Q ss_pred HHHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhH
Q 000973 348 AALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKT 427 (1205)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT 427 (1205)
..-.+.+++....+.|...| |+|+|+||||++++|.+|.+.|.+||.||++|.. |+.+..|||||||||||||
T Consensus 647 ~kals~~~~~fs~aiGAPKI------PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKT 719 (953)
T KOG0736|consen 647 DKALSRLQKEFSDAIGAPKI------PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKT 719 (953)
T ss_pred HHHHHHHHHhhhhhcCCCCC------CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchH
Confidence 33444455444444444444 8999999999999999999999999999999985 7888999999999999999
Q ss_pred HHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh--hHHHHHHH
Q 000973 428 LIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ--EQIHNSIV 505 (1205)
Q Consensus 428 ~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~--~~~~~~v~ 505 (1205)
++|+|+|.+|. ..|+.+.|.+++.+|+|++++++|.+|+.|+..+||||||||+|+|+|.|+..+ ++...+++
T Consensus 720 LlAKAVATEcs-----L~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV 794 (953)
T KOG0736|consen 720 LLAKAVATECS-----LNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV 794 (953)
T ss_pred HHHHHHHhhce-----eeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence 99999999994 999999999999999999999999999999999999999999999999986654 46788999
Q ss_pred HHHHHHhhCcc--cCCcEEEEccccccccccccccCCCCccccccCCCC-CchhhhhhhhccccccCCCCchhHHHHHhh
Q 000973 506 STLLALMDGLD--SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP-GCEARAEILDIHTRKWKQPPSRELKSELAA 582 (1205)
Q Consensus 506 ~~Ll~~ld~~~--~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P-~~eer~~Il~~~l~~~~~~~~~~~l~~LA~ 582 (1205)
+|||+.||++. ....|+||||||+|+.|||+|+|||||++.+++.++ +.+.+..||+...+++.+..+.++ .++|+
T Consensus 795 SQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL-~eiAk 873 (953)
T KOG0736|consen 795 SQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL-VEIAK 873 (953)
T ss_pred HHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH-HHHHh
Confidence 99999999998 467899999999999999999999999999999998 556688999999999999888887 57888
Q ss_pred hh-hcccchhHHHHhHHHHHHHHHHhCCceeccCCc-eEEeccceeeeehhhhhhhcccCcccc
Q 000973 583 SC-VGYCGADLKALCTEAAIRAFREKYPQVYTSDDK-FLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 583 ~t-~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~-~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
.| ..|+|+|+-+||..|++.|+.|....+...... ...+...+.|+++||..++++++|+..
T Consensus 874 ~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 874 KCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred hCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 77 479999999999999999999976544332111 123456688999999999999998854
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-41 Score=370.54 Aligned_cols=266 Identities=38% Similarity=0.629 Sum_probs=234.9
Q ss_pred ccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000973 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 370 ~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
++-+|++.|+||.|+.++|+.|+|+|.+|+.+|++|+.+. .|+++||++||||||||+||+|||.+|+ ..||.|
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNV 276 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNV 276 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEe
Confidence 4556889999999999999999999999999999999864 8899999999999999999999999996 899999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhh-HHHHHHHHHHHHHhhCcccC----CcEEEE
Q 000973 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE-QIHNSIVSTLLALMDGLDSR----GQVVLI 524 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~-~~~~~v~~~Ll~~ld~~~~~----~~viVI 524 (1205)
+.+.+.++|.|++++.++.+|+.|+..+|++|||||||+|+..|+..++ ..+.++.+.||.+||++... .-|+|+
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 9999999999999999999999999999999999999999999876654 56789999999999998653 238999
Q ss_pred ccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHH
Q 000973 525 GATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (1205)
Q Consensus 525 ~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~ 604 (1205)
++||.||.||.||+| ||...|+||+|+.+.|..+|+..+.......+..+ +.||+.+.||+|+||.++|++|.+.++
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~-~~lae~~eGySGaDI~nvCreAsm~~m 433 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNL-EDLAERSEGYSGADITNVCREASMMAM 433 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccH-HHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999998776655554 889999999999999999999999999
Q ss_pred HHhCCceeccCCceEE-eccceeeeehhhhhhhcccCcccc
Q 000973 605 REKYPQVYTSDDKFLI-DVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 605 rr~~~~i~~~~~~~~~-d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
+|....+......... ......++..||..|+.++.|+..
T Consensus 434 RR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 434 RRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9876544433322211 112256999999999999998744
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=362.25 Aligned_cols=244 Identities=38% Similarity=0.593 Sum_probs=227.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
.+++|+|+-|.+++|.+|.|+|.+ |+.|..|.++|-.-|+||||+||||||||+||||+|.+.+ ++||...+++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSE 372 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSE 372 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccc
Confidence 578999999999999999999998 9999999999999999999999999999999999999985 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
|-..|+|.+..+++.+|..|+..+||||||||||++.++|...........++|||..||++..+..||||+|||.|+.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999999998777778899999999999999999999999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceec
Q 000973 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~ 613 (1205)
|++|.|||||+++|.||.||...|.+||..|+.+....-+.+. .-||.-|.||+|+||.++++.|++.|.....
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~-~iiARGT~GFsGAdLaNlVNqAAlkAa~dga----- 526 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP-KIIARGTPGFSGADLANLVNQAALKAAVDGA----- 526 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH-hHhccCCCCCchHHHHHHHHHHHHHHHhcCc-----
Confidence 9999999999999999999999999999999999877666665 6799999999999999999999999988653
Q ss_pred cCCceEEeccceeeeehhhhhhhcccC
Q 000973 614 SDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 614 ~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
..+++.+++.+-.++.
T Consensus 527 -----------~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 527 -----------EMVTMKHLEFAKDRIL 542 (752)
T ss_pred -----------ccccHHHHhhhhhhee
Confidence 2477788877665553
No 15
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-38 Score=331.62 Aligned_cols=250 Identities=39% Similarity=0.668 Sum_probs=225.8
Q ss_pred cccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
.+...|.-++.||+|++.++++|++.|.+||.+|++|..+|+.||+||+|||+||||||+||+|+|+... ..|+.
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS-----ATFlR 249 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS-----ATFLR 249 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc-----hhhhh
Confidence 3344577899999999999999999999999999999999999999999999999999999999999885 78889
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccc---hhhhHHHHHHHHHHHHHhhCcccCCcEEEEc
Q 000973 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS---SKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~---~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~ 525 (1205)
+-+++++.+|.|+....++++|+.|..++|+|+||||||++..+|- ++++..-++.+-.||+.++++.+++.|-||+
T Consensus 250 vvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvim 329 (440)
T KOG0726|consen 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIM 329 (440)
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEE
Confidence 9999999999999999999999999999999999999999998773 3344445666678888999999999999999
Q ss_pred cccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHH
Q 000973 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 526 atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~r 605 (1205)
|||+.+.|||+|.||||+++.|+|+.|+...+..||.+|...+.+.-+..+ +.+...-..++|+||.++|.+|.+.|++
T Consensus 330 ATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl-e~li~~kddlSGAdIkAictEaGllAlR 408 (440)
T KOG0726|consen 330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL-EELIMTKDDLSGADIKAICTEAGLLALR 408 (440)
T ss_pred ecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH-HHHhhcccccccccHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999999887766665 6777778889999999999999999999
Q ss_pred HhCCceeccCCceEEeccceeeeehhhhhhhcccC
Q 000973 606 EKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 606 r~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
... +.++.+||..+.+.+.
T Consensus 409 erR----------------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 409 ERR----------------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred HHH----------------hhccHHHHHHHHHHHH
Confidence 753 3588999998876653
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-37 Score=318.56 Aligned_cols=244 Identities=40% Similarity=0.632 Sum_probs=224.6
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
|.+++.||+|++-+|.++++++.+||.+.++|.++|+.||+|||||||||||||+||+|+|+.. ...|+.+.+++
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvgse 224 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSE 224 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeeccHH
Confidence 7899999999999999999999999999999999999999999999999999999999999987 37899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccch---hhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS---KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~---~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
|+.+|.|++...++.+|+.|+.+.|+||||||||+++.+|-. +.+...++++-.||+.|+++....+|-||++||+.
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnra 304 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA 304 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcc
Confidence 999999999999999999999999999999999999987743 33445678888999999999999999999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.|||+|+||||+++.|+||+|+..+++-+|...+.++.+..+.++ +.+..+-...+|++|.++|++|.+.|++.+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl-e~~v~rpdkis~adi~aicqeagm~avr~nr-- 381 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL-EDLVARPDKISGADINAICQEAGMLAVRENR-- 381 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH-HHHhcCccccchhhHHHHHHHHhHHHHHhcc--
Confidence 9999999999999999999999999999999999999988877776 6788888899999999999999999999753
Q ss_pred eeccCCceEEeccceeeeehhhhhhhccc
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
..+...||.++....
T Consensus 382 --------------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 --------------YVVLQKDFEKAYKTV 396 (408)
T ss_pred --------------eeeeHHHHHHHHHhh
Confidence 357788888876654
No 17
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=328.84 Aligned_cols=227 Identities=37% Similarity=0.662 Sum_probs=215.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
|+|.|+||.|++.+|++|+++|.+|+.+|.+|.... .|.++|||||||||||+.||+|+|.+.+ ..||.++.++
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSSSD 201 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 201 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEEeehHH
Confidence 899999999999999999999999999999998754 7889999999999999999999999985 7899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-CCcEEEEcccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVDA 532 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-~~~viVI~atn~~~~ 532 (1205)
++++|+|+++..++++|+.|+.+.|+||||||||.||+.|+........++...||..|.+... ...|+|+++||.||.
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 9999999999999999999999999999999999999999998888899999999999998754 467999999999999
Q ss_pred ccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 533 ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
||.+++| ||...|++|+|....|..+|+.|+......++...+.+|+..|.||+|+||.-+++.|.+.-++...
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 9999999 9999999999999999999999999999999988889999999999999999999999999988754
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-37 Score=316.78 Aligned_cols=245 Identities=39% Similarity=0.681 Sum_probs=224.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
|.-+++-|+|++.++.+|++.+.+|..+|++|..+|+..|+|+|||||||||||+||+++|+.. .+.|+.+++++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgse 216 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSE 216 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHH
Confidence 6667888999999999999999999999999999999999999999999999999999999987 48999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
++.+|+|++...++.+|-.|+.++|+|||+||||++...|..+ ++...++.+-.||+.+|++....++-||++||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 9999999999999999999999999999999999998876433 3445567778889999999999999999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+-||++|+||||+++.|+||+|+.+.|.+||+.|.+++++.-..++ ..+|+...|.+|+++..+|.+|.+.|+++.
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l-~kiaekm~gasgaevk~vcteagm~alrer--- 372 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL-RKIAEKMPGASGAEVKGVCTEAGMYALRER--- 372 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-HHHHHhCCCCccchhhhhhhhhhHHHHHHh---
Confidence 9999999999999999999999999999999999999887665554 789999999999999999999999999975
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccC
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
.+.+|++||.-|..++-
T Consensus 373 -------------rvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 373 -------------RVHVTQEDFEMAVAKVM 389 (404)
T ss_pred -------------hccccHHHHHHHHHHHH
Confidence 35699999998876553
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=353.37 Aligned_cols=230 Identities=38% Similarity=0.652 Sum_probs=219.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
..+.|++|+|+.+++..|.+++.+|.+||.+|...+++.+.|||||||||||||+||-++|..++ +.|+.+.|.+
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-----~~fisvKGPE 736 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-----LRFISVKGPE 736 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----eeEEEecCHH
Confidence 44899999999999999999999999999999999999999999999999999999999999984 8999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
++++|+|.+++.++.+|..|+..+|||||+||+|.++|+|+....+...+++++||..||+...-.+|.|+|||.+|+.|
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000973 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
||||+||||+++.++.++|+..+|++||+.+...+....+.++ +.+|..|.||+|+||+.||-.|.+.|+.+...
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl-~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL-ECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch-HHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988766655554 89999999999999999999999999988654
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-36 Score=314.22 Aligned_cols=246 Identities=39% Similarity=0.679 Sum_probs=221.9
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
-.|.+++.||+|..++++.|++.|..||.+|+.|..+|+.||+|||||||||||||++|+|+|+... ..|+.+-+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirvig 244 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIG 244 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehh
Confidence 3478999999999999999999999999999999999999999999999999999999999999874 78999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++++.+|+|+....++.+|+.|+....|||||||||++.+.|-.. ++...++.+-.|++.|+++..++++-|+.+||
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn 324 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN 324 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC
Confidence 999999999999999999999999999999999999999887433 33445667777888899999999999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+|+.|||+|+||||+++.++|.+|+.+.|..||++|.+.+...-+... +.||..|..-+|++|+++|.+|.+.|++...
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~-ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRF-ELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhH-HHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999999999999999999877655544 7899999999999999999999999988643
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhccc
Q 000973 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
. ..|..||..|+.++
T Consensus 404 k----------------~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 K----------------VATEKDFLDAVNKV 418 (435)
T ss_pred h----------------hhhHHHHHHHHHHH
Confidence 2 36778888776654
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=364.25 Aligned_cols=248 Identities=38% Similarity=0.622 Sum_probs=228.3
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
+..|+|.|++|.+++|.+|.|+|.+ |.+|+.|.++|...|+|+||+||||||||+||+|+|.+.+ ++|+.++++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS 378 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS 378 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH
Confidence 3569999999999999999999999 9999999999999999999999999999999999999985 999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccch----hhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS----KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~----~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
+|+..++|....+++.+|..|+...||||||||||++...++. .........++|||..||++.....|+||++||
T Consensus 379 EFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 379 EFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred HHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC
Confidence 9999999999999999999999999999999999999988842 344567789999999999999999999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+++.||++|+|||||++.|.++.|+...|.+|++.|++......+...+..||.+|.||+|+||.++|++|++.|+++..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988875555566799999999999999999999999999764
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000973 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
. .|+..||..+++++...
T Consensus 539 ~----------------~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 539 R----------------EIGTKDLEYAIERVIAG 556 (774)
T ss_pred C----------------ccchhhHHHHHHHHhcc
Confidence 3 47888999888866533
No 22
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-36 Score=312.10 Aligned_cols=245 Identities=38% Similarity=0.637 Sum_probs=224.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
|.-+++||+|++.++++|.+++.+|+.+++.|..+|+.||+|+|+|||||||||++|+|+|.... ..|+.+-+..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~-----aTFLKLAgPQ 240 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN-----ATFLKLAGPQ 240 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----chHHHhcchH
Confidence 56678999999999999999999999999999999999999999999999999999999998874 6788888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
++..|+|++...++..|..|+...|+||||||+|++..+|... ++...++.+-.||+.|+++.+...+-||++||+.
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 9999999999999999999999999999999999998877443 3344566777888999999999999999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+-|||+|+|.||+++.|+||.|+.+.|..|+++|.+++....+..+ ++||..|.+|+|++..++|-+|.+.|+++...
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-eELaRsTddFNGAQcKAVcVEAGMiALRr~at- 398 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-EELARSTDDFNGAQCKAVCVEAGMIALRRGAT- 398 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-HHHhhcccccCchhheeeehhhhHHHHhcccc-
Confidence 9999999999999999999999999999999999999998887776 89999999999999999999999999998543
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccC
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
.|+.+||.+.+..++
T Consensus 399 ---------------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 399 ---------------EVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------cccHHHHHHHHHHHH
Confidence 478889988776554
No 23
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=320.09 Aligned_cols=223 Identities=19% Similarity=0.246 Sum_probs=195.6
Q ss_pred eecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhc
Q 000973 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
....+.+++.+++||+.+++++.+.+. -++.+++.|.++|+. +|+|+|||||||||||+||+|+|+..
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VE---LPL~~PElF~~~GI~---------PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVE---LPLKNPELFEELGID---------PPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhc---ccccCHHHHHHcCCC---------CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 345788999999999999999988753 377889999998753 36899999999999999999999998
Q ss_pred ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHH---hcCC
Q 000973 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLE---ELPS 797 (1205)
Q Consensus 728 ~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~---~~~~ 797 (1205)
+..|+++.+++|+.+| +|+....++++|..|+..+||||||||||++... ....+..++++||. +.++
T Consensus 210 -~AtFIrvvgSElVqKY-iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 210 -DATFIRVVGSELVQKY-IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -CceEEEeccHHHHHHH-hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 8999999999999998 8999999999999999999999999999999843 22345555555555 4556
Q ss_pred CCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Q 000973 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (1205)
Q Consensus 798 ~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~ 875 (1205)
..+|=||+|||++ +.||| |.+|+|| +.|+||+|+.+.|.+||+.|.+++ ....+++++.|+..
T Consensus 288 ~~nvKVI~ATNR~-D~LDP--ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM----------~l~~dvd~e~la~~-- 352 (406)
T COG1222 288 RGNVKVIMATNRP-DILDP--ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM----------NLADDVDLELLARL-- 352 (406)
T ss_pred CCCeEEEEecCCc-cccCh--hhcCCCcccceeecCCCCHHHHHHHHHHHhhhc----------cCccCcCHHHHHHh--
Confidence 7899999999998 99999 8888887 999999999999999999999986 66788999999988
Q ss_pred ccCCCchhhhhHhH-HHHHHHHHHHH
Q 000973 876 VESGPKASELKAKV-EAEQHALRRLR 900 (1205)
Q Consensus 876 ~~~g~S~aELk~~~-ea~~~alrelr 900 (1205)
+.|+|||+|+++| ||-+.++|+-|
T Consensus 353 -~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 353 -TEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred -cCCCchHHHHHHHHHHhHHHHHhcc
Confidence 8899999999999 99999999854
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=300.98 Aligned_cols=240 Identities=35% Similarity=0.564 Sum_probs=214.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
++++|+||+|++++|..++-++.+ |.+|+.|..+. |++||||||||||||++|+|||++. .++|+.+++..
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~ 186 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATE 186 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC---cceeEEECCCCccHHHHHHHHhccc-----CCceEEechHH
Confidence 689999999999999999888877 89999998875 7899999999999999999999998 48999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh-hHHHHHHHHHHHHHhhCcccCCcEEEEcccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~-~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ 532 (1205)
+++.++|++..+++.+++.|...+|||+||||+|+++-.|.-.. .+....+++.||..||++..+.+|+.|++||+|+.
T Consensus 187 liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 187 LIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 99999999999999999999999999999999999987664321 12346789999999999999999999999999999
Q ss_pred ccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHH-HhHHHHHHHHHHhCCce
Q 000973 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA-LCTEAAIRAFREKYPQV 611 (1205)
Q Consensus 533 ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~-L~~eA~~~a~rr~~~~i 611 (1205)
||+++++ ||...|+|.+|+.++|..|++.++.++..+.+.. +..+++.+.|+||+||.. ++..|.+.|+.+..
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~--- 340 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR--- 340 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch---
Confidence 9999999 9999999999999999999999999999888877 589999999999999975 56677778887643
Q ss_pred eccCCceEEeccceeeeehhhhhhhcccCc
Q 000973 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (1205)
Q Consensus 612 ~~~~~~~~~d~~~~~It~~df~~al~~i~p 641 (1205)
-.|+.+||..|+.+..+
T Consensus 341 -------------e~v~~edie~al~k~r~ 357 (368)
T COG1223 341 -------------EKVEREDIEKALKKERK 357 (368)
T ss_pred -------------hhhhHHHHHHHHHhhcc
Confidence 24788999999886543
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.8e-34 Score=334.47 Aligned_cols=247 Identities=36% Similarity=0.621 Sum_probs=222.3
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.|.++|++|+|++.++.+|++++.+|+.+|++|..+|+.+++++|||||||||||++|+++|+.++ ..|+.+.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~s 213 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVGS 213 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehH
Confidence 478999999999999999999999999999999999999999999999999999999999999885 668888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.+..+|+|++...++.+|..+....|+||||||||.+++.+... .......++.+|+..|+++....+++||++||+
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~ 293 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 293 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998776322 223345788889999998888889999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000973 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
++.||++++|+|||+..|+|+.|+.++|..||+.++.+++...+.++ ..++..+.||+|+||.++|.+|++.|+++..
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~-~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~- 371 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL-EDFVSRPEKISAADIAAICQEAGMQAVRKNR- 371 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 99999999999999999999999999999999999998877655554 7899999999999999999999999998742
Q ss_pred ceeccCCceEEeccceeeeehhhhhhhcccCc
Q 000973 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (1205)
Q Consensus 610 ~i~~~~~~~~~d~~~~~It~~df~~al~~i~p 641 (1205)
..|+.+||..|+..+..
T Consensus 372 ---------------~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 372 ---------------YVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------CccCHHHHHHHHHHHHh
Confidence 25889999999887643
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-34 Score=316.82 Aligned_cols=228 Identities=44% Similarity=0.712 Sum_probs=212.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccc-cCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
-.++|+||+|++.++++|++.|.+|+.+|++|...+ +.+++||||+||||||||++|+|+|++.+ .+|+.+..+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag-----a~fInv~~s 161 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG-----ANFINVSVS 161 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC-----CCcceeecc
Confidence 368999999999999999999999999999997544 46889999999999999999999999996 778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCc--EEEEcccccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ--VVLIGATNRV 530 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~--viVI~atn~~ 530 (1205)
.+.++|+|+++..++.+|..|..-+||||||||+|.+++.|...+......+..+|+..+|++.+.++ |+|+||||+|
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999777778888999999999999988765 9999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
..+|.|+.| |+.+.++|++|+..+|.+||+.+++...+..+.++ .++|..|.||||.||..+|..|++..++....
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~-~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDL-DEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCH-HHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 999999999 99999999999999999999999999888877766 78999999999999999999999999998653
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=342.75 Aligned_cols=252 Identities=46% Similarity=0.740 Sum_probs=232.5
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+.++|.+++|++.++..+++.+.+|+.+++.|...++.+++++|||||||||||+||+++|++++ .+|+.+.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~-----~~fi~v~~ 309 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR-----SRFISVKG 309 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC-----CeEEEeeC
Confidence 4478999999999999999999999999999999999999999999999999999999999999874 88999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
++++++|+|+++..++.+|..|+...||||||||+|++++.++........+++.+|+.+|+++....+|+||+|||+|+
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999999887766656799999999999999999999999999999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCC-CchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP-PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~-~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
.+|++++|+|||+..|+|++|+.++|.+||+.++...... ...-.+..++..+.||+|+||..+|++|++.++++..
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-- 467 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-- 467 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999999999999999999999999999999976654 3344558899999999999999999999999999763
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCccc
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~ 643 (1205)
...|+.+||..++..+.|+.
T Consensus 468 -------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 468 -------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred -------------cCCccHHHHHHHHHhcCCCC
Confidence 23489999999999987763
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.5e-33 Score=355.97 Aligned_cols=266 Identities=44% Similarity=0.718 Sum_probs=232.4
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.+++.|++++.+|+.++++|..+|+.+++++|||||||||||++|+++|++++ .+|+.++++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-----~~fi~v~~~ 521 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGP 521 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehH
Confidence 368899999999999999999999999999999999999999999999999999999999999985 689999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh-hHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~-~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
+++++|+|+++..++.+|..|+...||||||||||.|++.++... .....+++++||..|+++....+++||+|||+++
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999999998876432 3456789999999999988888999999999999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCce
Q 000973 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i 611 (1205)
.||++++|||||+..|+|++|+.++|.+||+.++.+.....+.+ +..||..|.||+|+||.++|++|++.++++.....
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~-l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~ 680 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD-LEELAEMTEGYTGADIEAVCREAAMAALRESIGSP 680 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999998876655444 48899999999999999999999999999764322
Q ss_pred eccCC-c-eEEeccceeeeehhhhhhhcccCcccc
Q 000973 612 YTSDD-K-FLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 612 ~~~~~-~-~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
..... . .........|+.+||..++..+.|+..
T Consensus 681 ~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 681 AKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 11000 0 000112356999999999999988743
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=333.73 Aligned_cols=246 Identities=37% Similarity=0.618 Sum_probs=227.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
..++|.|+.|.+++|++|.++|.+ |+.|..|..+|...|+|+||+||||||||+||+|+|.+.+ ++|+.+++++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~-----VPFf~iSGS~ 218 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGSD 218 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC-----CCceeccchh
Confidence 569999999999999999999998 9999999999999999999999999999999999999984 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccch---hhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS---KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~---~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
|+..|+|-...++|.+|.+|+.++||||||||||++...|+. ++.......+++||..||++..+..|+||++||+|
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp 298 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP 298 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999887743 34455678999999999999988899999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+-+|+||+|||||++.|.++.|+...|.+|++.|+++.....+.++ ..+|..|.||+|+++.+++++|++.|++++..
T Consensus 299 dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl-~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~- 376 (596)
T COG0465 299 DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL-KKIARGTPGFSGADLANLLNEAALLAARRNKK- 376 (596)
T ss_pred ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH-HHHhhhCCCcccchHhhhHHHHHHHHHHhcCe-
Confidence 9999999999999999999999999999999999999888766666 56999999999999999999999999998643
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
.|+..||.++..++.-.
T Consensus 377 ---------------~i~~~~i~ea~drv~~G 393 (596)
T COG0465 377 ---------------EITMRDIEEAIDRVIAG 393 (596)
T ss_pred ---------------eEeccchHHHHHHHhcC
Confidence 47888999888876533
No 30
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.6e-33 Score=325.29 Aligned_cols=253 Identities=44% Similarity=0.722 Sum_probs=224.0
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..|.++|++|+|++++++.|.+++.+|+.++++|..+|+.++++||||||||||||++|+++|+.++ ..|+.+.+
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~ 198 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVG 198 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeeh
Confidence 3478999999999999999999999999999999999999999999999999999999999999985 56888999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
.++...|+|+....++.+|..+....|+||||||||.|++.+.... .......+.+|+..++++...++++||+|||
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn 278 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 278 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999987765432 2233556777888888877778999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
.++.+|++|+|||||+..|+|++|+.++|.+||+.++.+.....+.+ +..||..|.||+|+||.++|++|++.|+++..
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~-~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~ 357 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD-LEELAELTEGASGADLKAICTEAGMFAIRDDR 357 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998876654444 47899999999999999999999999988632
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCcccccc
Q 000973 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRG 646 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~ 646 (1205)
..|+.+||..|+..+.+.....
T Consensus 358 ----------------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 358 ----------------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------------CCcCHHHHHHHHHHHhcccccc
Confidence 2489999999999887764443
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=1.2e-32 Score=328.80 Aligned_cols=353 Identities=17% Similarity=0.223 Sum_probs=251.2
Q ss_pred CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchh
Q 000973 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEA 556 (1205)
Q Consensus 477 ~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~ee 556 (1205)
.|.|++|.|+|.++.. ....+.+..|... +....+.+||.+.+ ..++..|.+ +..++.+|+|+.+|
T Consensus 81 ~~~~~vl~d~h~~~~~------~~~~r~l~~l~~~---~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND------ISISRKLRNLSRI---LKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc------hHHHHHHHHHHHH---HHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 3789999999998721 1122233333332 33345556665554 357777776 55788999999999
Q ss_pred hhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhh
Q 000973 557 RAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (1205)
Q Consensus 557 r~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al 636 (1205)
+..+++.+....+...+...++.++..+.|++..+++.++..+... .. .++.+++...+
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~i~ 205 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT----YK-----------------TIDENSIPLIL 205 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cC-----------------CCChhhHHHHH
Confidence 9999988887777778888889999999999999999998764321 10 12222222222
Q ss_pred cccCccccccc--eecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCC
Q 000973 637 STITPAAHRGA--TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGT 714 (1205)
Q Consensus 637 ~~i~ps~~r~~--~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGt 714 (1205)
+.......+.. ....+...|.+++|++...+++..... .+ .... ..+|... +.|+||+|||||
T Consensus 206 ~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~-~~-----~~~~-----~~~gl~~----pkGILL~GPpGT 270 (489)
T CHL00195 206 EEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRST-SF-----SKQA-----SNYGLPT----PRGLLLVGIQGT 270 (489)
T ss_pred HHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHH-Hh-----hHHH-----HhcCCCC----CceEEEECCCCC
Confidence 11111111111 112345678899988776666654321 11 1111 2244333 479999999999
Q ss_pred CCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh--------HHHHHHH
Q 000973 715 GVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--------AHEQLRA 786 (1205)
Q Consensus 715 GKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~--------~~~~~~~ 786 (1205)
|||++|++||+++ +++|+.++.+.++++| +|+++..++++|..|+..+||||||||||.++.. ...++++
T Consensus 271 GKTllAkaiA~e~-~~~~~~l~~~~l~~~~-vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~ 348 (489)
T CHL00195 271 GKSLTAKAIANDW-QLPLLRLDVGKLFGGI-VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLA 348 (489)
T ss_pred cHHHHHHHHHHHh-CCCEEEEEhHHhcccc-cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHH
Confidence 9999999999999 8999999999999987 8999999999999999999999999999998742 3456666
Q ss_pred HHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCC
Q 000973 787 VLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQES 864 (1205)
Q Consensus 787 ~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~ 864 (1205)
+|+++|++. ..+|+||||||++ +.||+ +.++++| .+|+|++|+.++|..||+.++.+.. .....+
T Consensus 349 ~lL~~l~~~--~~~V~vIaTTN~~-~~Ld~--allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~--------~~~~~~ 415 (489)
T CHL00195 349 TFITWLSEK--KSPVFVVATANNI-DLLPL--EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR--------PKSWKK 415 (489)
T ss_pred HHHHHHhcC--CCceEEEEecCCh-hhCCH--HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC--------CCcccc
Confidence 777777643 4589999999998 89998 4444333 8999999999999999999998630 011235
Q ss_pred CCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHH
Q 000973 865 VSLPELPKVPTVESGPKASELKAKV-EAEQHALR 897 (1205)
Q Consensus 865 ~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alr 897 (1205)
.++..|+.. +.||+|+||+++| ++...+..
T Consensus 416 ~dl~~La~~---T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 416 YDIKKLSKL---SNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred cCHHHHHhh---cCCCCHHHHHHHHHHHHHHHHH
Confidence 667777776 8899999999999 66655543
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.98 E-value=1.6e-32 Score=323.21 Aligned_cols=247 Identities=39% Similarity=0.669 Sum_probs=219.5
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..|.++|+||+|++.+++.|.+++.+|+.+|++|..+|+.++.++|||||||||||++|++||+++. ..|+.+.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~fi~V~~ 250 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATFLRVVG 250 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCEEEEec
Confidence 3477899999999999999999999999999999999999999999999999999999999999985 56788889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
+++...|.|+....++.+|..+....|+||||||||.++..+... +......++.+|+..|+++....++.||+|||
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN 330 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC
Confidence 999999999999999999999999999999999999998766432 22334566778888888887778899999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+++.||++++|+|||+..|+|+.|+.++|.+||+.++.++....+.+ +..++..+.||+|+||.++|.+|++.|+++..
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd-l~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD-LEEFIMAKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998877654444 47899999999999999999999999998753
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccC
Q 000973 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
..|+.+||..|+..+.
T Consensus 410 ----------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 410 ----------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred ----------------CccCHHHHHHHHHHHH
Confidence 2488999999887763
No 33
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=2.5e-31 Score=336.71 Aligned_cols=420 Identities=17% Similarity=0.214 Sum_probs=284.7
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEec
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRK 450 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~ 450 (1205)
-.+++++|++..+..+.+++.. ...+++||+||||||||++|+++|+.+.... ....++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 4678899999999988877654 3456899999999999999999999984432 246788888
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 451 GADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 451 ~~~l~--~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
+..++ .+|.|+.+..++.+|+.+....++||||||||.|++.+...++. ..+.+.|+..|. ++.+.|||+||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CCCeEEEEecC
Confidence 88887 47899999999999999987788999999999999775432221 122333444443 67899999999
Q ss_pred ccc-----cccccccCCCCccccccCCCCCchhhhhhhhccccc----cCCCCchhHHHHHhhhhhcccchh-----HHH
Q 000973 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYCGAD-----LKA 594 (1205)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----~~~~~~~~~l~~LA~~t~G~sgad-----I~~ 594 (1205)
..+ .+|++|.| ||. .|.|+.|+.+++..||+.+... ....++++.+..++..+..|.+.. .-.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 743 47999999 995 7999999999999999976654 345678888888988888776442 345
Q ss_pred HhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhh
Q 000973 595 LCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYIS 674 (1205)
Q Consensus 595 L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~ 674 (1205)
++.+|+.....+... .....|+.+|+..++..++.. +...+.+.....+......+.+.
T Consensus 397 lld~a~a~~~~~~~~------------~~~~~v~~~~i~~~i~~~tgi-------P~~~~~~~~~~~l~~l~~~l~~~-- 455 (731)
T TIGR02639 397 VIDEAGASFRLRPKA------------KKKANVSVKDIENVVAKMAHI-------PVKTVSVDDREKLKNLEKNLKAK-- 455 (731)
T ss_pred HHHHhhhhhhcCccc------------ccccccCHHHHHHHHHHHhCC-------ChhhhhhHHHHHHHHHHHHHhcc--
Confidence 566655432211100 112458888998888876422 11223334343333332222222
Q ss_pred hcCCCCccchhhhh-hhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-----------
Q 000973 675 DIFPPLGMSSELTK-LCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS----------- 742 (1205)
Q Consensus 675 ~i~p~~~~~~~~~~-l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~----------- 742 (1205)
|+.+-.....+.+ +.....|...|.++...+||+||+|||||++|++||+.+ +.+++.++++++..
T Consensus 456 -v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 456 -IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-GVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred -eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-cCCeEEEeCchhhhcccHHHHhcCC
Confidence 2221111111111 111233454454444469999999999999999999998 78899998877532
Q ss_pred -CCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhc---------CCCCCeEEeccCCcCCc
Q 000973 743 -DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVPLA 812 (1205)
Q Consensus 743 -~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~---------~~~~~v~vIattn~~~~ 812 (1205)
+| +|..+ ...+...++..+.+||||||||++.+ .+.+.|+++|++- -++.+++||+|||....
T Consensus 534 ~gy-vg~~~--~~~l~~~~~~~p~~VvllDEieka~~----~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~ 606 (731)
T TIGR02639 534 PGY-VGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP----DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS 606 (731)
T ss_pred CCC-cccch--hhHHHHHHHhCCCeEEEEechhhcCH----HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence 12 23211 22344445567779999999998755 5666788888752 12568889999997522
Q ss_pred cc------------------------cCCCccccCCCceeeecCCCccchhhhHHHHHHHH
Q 000973 813 EV------------------------EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 813 ~L------------------------d~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.+ .|....+++ .++.|.+.+.++...|++..+...
T Consensus 607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid--~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLD--AIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred hhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCC--eEEEcCCCCHHHHHHHHHHHHHHH
Confidence 11 111111222 688899999999999999998764
No 34
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=8.9e-32 Score=321.39 Aligned_cols=244 Identities=27% Similarity=0.424 Sum_probs=211.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.+|..|.+.... +...+..+|+.+++|||||||||||||++|+++|++++ .+|+.+++..
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~~~l~~~~ 294 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPLLRLDVGK 294 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEEhHH
Confidence 567899999999999999875433 34455678999999999999999999999999999985 7889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccch-hhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS-KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDA 532 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~-~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ 532 (1205)
+.++|+|+++..++.+|..+...+||||||||||.+++.+.. .......+++.+|+.+|+. ....++||+|||.++.
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDL 372 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhh
Confidence 999999999999999999999999999999999998875432 2344567899999999984 4567999999999999
Q ss_pred ccccccCCCCccccccCCCCCchhhhhhhhccccccCCC-CchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCce
Q 000973 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP-PSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (1205)
Q Consensus 533 ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~-~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i 611 (1205)
||++++|+|||+..|+|+.|+.++|.+||+.++.+.... .....++.||..|.||+|+||.++|.+|+..|+.+..
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~--- 449 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR--- 449 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 999999999999999999999999999999999886543 2344468999999999999999999999998876432
Q ss_pred eccCCceEEeccceeeeehhhhhhhcccCcccc
Q 000973 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 612 ~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
.++.+||..++..+.|.+.
T Consensus 450 --------------~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 450 --------------EFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred --------------CcCHHHHHHHHHhcCCCcc
Confidence 3789999999999998754
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.5e-30 Score=310.13 Aligned_cols=228 Identities=39% Similarity=0.676 Sum_probs=196.7
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-----CCeEEE
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSF 446 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~ 446 (1205)
..|.++|++|+|++.+++.|++.+.+|+.++++|..+|+.+++++|||||||||||++|+++|+.+... .....|
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 347899999999999999999999999999999999999999999999999999999999999998654 224567
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhhc----CCceEEEeccCCcccccchh-hhHHHHHHHHHHHHHhhCcccCCcE
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSK-QEQIHNSIVSTLLALMDGLDSRGQV 521 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~----~p~VL~IDEid~L~~~r~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v 521 (1205)
+.+.+.+++++|+|+++..++.+|..+... .|+||||||+|.|++.++.. .......++.+||..|+++...+++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 788889999999999999999999988763 69999999999999877543 2334567889999999999888899
Q ss_pred EEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 522 VLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 522 iVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
+||+|||+++.||++|+|||||+..|+|+.|+.+++.+||+.++... ..+..+ +..+.|++++++..+|+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~-----l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDAD-----LAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHH-----HHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998652 222222 234678888999998888866
Q ss_pred HHHH
Q 000973 602 RAFR 605 (1205)
Q Consensus 602 ~a~r 605 (1205)
..+.
T Consensus 409 ~~~a 412 (512)
T TIGR03689 409 HLYA 412 (512)
T ss_pred HHhh
Confidence 5554
No 36
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=5.4e-30 Score=319.83 Aligned_cols=421 Identities=18% Similarity=0.241 Sum_probs=271.5
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEec
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRK 450 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~ 450 (1205)
-.++.++|.+..+..+.+++.. ....++||+||||||||++|+++|..+.... ....++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3567799999999999887765 3456889999999999999999998764332 245566666
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 451 GADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 451 ~~~l~--~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
...++ .+|.|+.+..++.+|..+....++||||||||.|++.+...+.+ ..+.+.|.. +..++.+.||++||
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp----~L~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKP----LLSSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHH----HHhCCCeEEEecCC
Confidence 66666 46889999999999999988888999999999999876432221 112222222 33478899999999
Q ss_pred ccc-----cccccccCCCCccccccCCCCCchhhhhhhhcccccc----CCCCchhHHHHHhhhhhccc-----chhHHH
Q 000973 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYC-----GADLKA 594 (1205)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----~~~~~~~~l~~LA~~t~G~s-----gadI~~ 594 (1205)
..+ .+|++|.| ||. .|.|+.|+.+++..||+.+...+ ++.++++.+..++..+..|. +.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 865 47999999 995 79999999999999999766554 44566777766666555532 335667
Q ss_pred HhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhh
Q 000973 595 LCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYIS 674 (1205)
Q Consensus 595 L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~ 674 (1205)
++.+|+..... .+. . .....|+..|+...+...+..... .+.... ...+..+...+.
T Consensus 401 lldea~a~~~~--~~~---~-------~~~~~v~~~~i~~v~~~~tgip~~-------~~~~~~----~~~l~~l~~~L~ 457 (758)
T PRK11034 401 VIDEAGARARL--MPV---S-------KRKKTVNVADIESVVARIARIPEK-------SVSQSD----RDTLKNLGDRLK 457 (758)
T ss_pred HHHHHHHhhcc--Ccc---c-------ccccccChhhHHHHHHHHhCCChh-------hhhhhH----HHHHHHHHHHhc
Confidence 78887754311 110 0 011246777787777665532111 111111 112222222221
Q ss_pred -hcCCCCccchhhhh-hhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC----------
Q 000973 675 -DIFPPLGMSSELTK-LCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS---------- 742 (1205)
Q Consensus 675 -~i~p~~~~~~~~~~-l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~---------- 742 (1205)
.|+.+-..-..+.. +.....|+..|.++...+||+||||||||++|+++|..+ +.+|+.++++++..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-CCCcEEeechhhcccccHHHHcCC
Confidence 12211111111111 111123444444444569999999999999999999999 78999998876532
Q ss_pred --CCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhc---------CCCCCeEEeccCCcCC
Q 000973 743 --DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVPL 811 (1205)
Q Consensus 743 --~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~---------~~~~~v~vIattn~~~ 811 (1205)
+| +|..+ ...+....+..+.|||||||||++.+ .+.+.|+++|++- -++.+++||+|||.-.
T Consensus 537 ~~gy-vg~~~--~g~L~~~v~~~p~sVlllDEieka~~----~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 537 PPGY-VGFDQ--GGLLTDAVIKHPHAVLLLDEIEKAHP----DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred CCCc-ccccc--cchHHHHHHhCCCcEEEeccHhhhhH----HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 11 22111 11233334456679999999999754 5667788888742 1246889999999431
Q ss_pred ccccC----------------CCcccc------CCCceeeecCCCccchhhhHHHHHHHH
Q 000973 812 AEVEG----------------DPSTVF------PLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 812 ~~Ld~----------------~~~~~f------~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
..+-. .+...| +...++.|.+.+.++...|+..++...
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 11000 001112 112688899999999999999888754
No 37
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=280.81 Aligned_cols=228 Identities=40% Similarity=0.657 Sum_probs=203.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
..++|+.|+|+-.++.++.+.|..||.+|++|...|+.+|.+++||||||+|||++|+++|..++ ++|+.+..+.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg-----~nfl~v~ss~ 201 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG-----VNFLKVVSSA 201 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC-----CceEEeeHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999996 8899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHH---HHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQI---HNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~---~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
+.++|.|++...++..|..|+...|||||+||||++.+.+.+..... -.+.+-.|++.|+++...++|-+|+|||+|
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP 281 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc
Confidence 99999999999999999999999999999999999998875544333 344555566667777788899999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHh
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
+.|+|+|+||||+++.+++|+|+...|..|++.|.+.+...-.-+ .+.+.+...||+|+|+++.|++|.+.+++..
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid-~eaivK~~d~f~gad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID-DEAILKLVDGFNGADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc-HHHHHHHHhccChHHHhhhcccccccccchh
Confidence 999999999999999999999999999999999998865432222 4678899999999999999999998777653
No 38
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.6e-30 Score=316.75 Aligned_cols=246 Identities=39% Similarity=0.623 Sum_probs=218.9
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|+++++.+|.+++.+ +.+++.|..+|..+++++||+||||||||++|++||.+++ ++|+.++++
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~ 122 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGS 122 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCeeeccHH
Confidence 3789999999999999999999887 8899999999999999999999999999999999999884 678999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++...+.|.+...++.+|..+....||||||||||.|++.+... .......++++||..|+++....+++||+|||+
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999876542 233456788999999999888889999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000973 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
++.||++|+|||||+..|+|+.|+.++|.+||+.++......... .+..+|..+.||+++||.++|++|+..+.++..
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~-~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~- 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV-DLKAVARRTPGFSGADLANLLNEAALLAARKNK- 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch-hHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 999999999999999999999999999999999999876654333 357899999999999999999999988877532
Q ss_pred ceeccCCceEEeccceeeeehhhhhhhcccCc
Q 000973 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (1205)
Q Consensus 610 ~i~~~~~~~~~d~~~~~It~~df~~al~~i~p 641 (1205)
..|+.+||..++..+..
T Consensus 281 ---------------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 281 ---------------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred ---------------CCCCHHHHHHHHHHHhc
Confidence 24888999999887653
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.3e-30 Score=300.83 Aligned_cols=245 Identities=46% Similarity=0.734 Sum_probs=215.0
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++++++.|++++..|+.+++.|..+|+.+++++|||||||||||++|+++|+.++ ..|+.+.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~~~v~~~ 190 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGS 190 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCEEecchH
Confidence 478999999999999999999999999999999999999999999999999999999999999985 457788888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.+...|+|+....++.+|..+....|+||||||+|.|+..+.... .......+.+++..++++...++++||+|||.
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 999999999999999999999999999999999999987654322 22334566778888887777788999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000973 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
++.+|++++++|||+..|+|+.|+.++|.+||+.++.......+.+ +..++..+.||+|+||.++|.+|++.|+++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~-~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~- 348 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD-LEAIAKMTEGASGADLKAICTEAGMFAIREER- 348 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999988776554333 57899999999999999999999999988642
Q ss_pred ceeccCCceEEeccceeeeehhhhhhhccc
Q 000973 610 QVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 610 ~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
..|+.+||..|+..+
T Consensus 349 ---------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 349 ---------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------CccCHHHHHHHHHHh
Confidence 248889999887654
No 40
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-30 Score=296.74 Aligned_cols=260 Identities=38% Similarity=0.594 Sum_probs=227.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.+.|++|+|++.++..+.+++.+|+..+++|..+. .+.+++||.||||+|||+|++|||.+++ ..|+.++++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~-----atff~iSass 221 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG-----ATFFNISASS 221 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc-----ceEeeccHHH
Confidence 679999999999999999999999999999999876 6788999999999999999999999995 8999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc--CCcEEEEccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRVD 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~--~~~viVI~atn~~~ 531 (1205)
+.++|+|+++..++.+|.-|+..+|+|+||||||.++.+|.........++..++|..+++... .++|+||||||.||
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 9999999999999999999999999999999999999999777777788899999988887654 35899999999999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCce
Q 000973 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i 611 (1205)
.+|.+++| ||...++||+|+.+.|..||+.++...+..+....+..|+..|+||++.||.++|.+|++.-.+.....
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~- 378 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT- 378 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc-
Confidence 99999999 999999999999999999999999988777777778999999999999999999999998777765431
Q ss_pred eccCCceEEeccceeeeehhhhhhhcccCcccc
Q 000973 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 612 ~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
.............++..||..++..+.+...
T Consensus 379 --~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 379 --TDLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred --hhhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 0000011112345788888888888876533
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-30 Score=287.04 Aligned_cols=223 Identities=19% Similarity=0.277 Sum_probs=188.6
Q ss_pred ccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhh
Q 000973 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala 724 (1205)
+......+.+.|++|.+|.+..+-+.+++ +-++..++.|+.+. .| =+|+|++||||||||+||||||
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAV---vlPi~mPe~F~Gir-------rP---WkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAV---VLPIWMPEFFKGIR-------RP---WKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHH---hhhhhhHHHHhhcc-------cc---cceeeeeCCCCCcHHHHHHHHH
Confidence 44555677899999999876655555542 22555566655332 12 2589999999999999999999
Q ss_pred hhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh--------HHHHHHHHHHHHHHhcC
Q 000973 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--------AHEQLRAVLLTLLEELP 796 (1205)
Q Consensus 725 ~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~--------~~~~~~~~ll~lL~~~~ 796 (1205)
.++ +..|+.|+.+.|.++| -|++|+.++-||..|+-.+|++|||||||+|++. .+.++++.||..||++.
T Consensus 267 TEc-~tTFFNVSsstltSKw-RGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 267 TEC-GTTFFNVSSSTLTSKW-RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred Hhh-cCeEEEechhhhhhhh-ccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc
Confidence 999 8999999999999998 8999999999999999999999999999999944 56799999999999985
Q ss_pred C----CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 000973 797 S----HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPK 872 (1205)
Q Consensus 797 ~----~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~ 872 (1205)
+ ...|||+|+||.| ++||+ +.++++...|+||+|+.+.|..+|+.+|+.. ....+++++.|+.
T Consensus 345 ~t~e~~k~VmVLAATN~P-WdiDE--AlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~----------~~~~~~~~~~lae 411 (491)
T KOG0738|consen 345 GTLENSKVVMVLAATNFP-WDIDE--ALRRRLEKRIYIPLPDAEARSALIKILLRSV----------ELDDPVNLEDLAE 411 (491)
T ss_pred cccccceeEEEEeccCCC-cchHH--HHHHHHhhheeeeCCCHHHHHHHHHHhhccc----------cCCCCccHHHHHH
Confidence 4 3459999999998 99999 8888777888899999999999999999753 5667788888877
Q ss_pred CCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 873 VPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 873 ~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
. +.||||++|.++| ++.++++|+
T Consensus 412 ~---~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 412 R---SEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred H---hcCCChHHHHHHHHHHHHHHHHH
Confidence 7 8999999999999 999999886
No 42
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.6e-29 Score=310.92 Aligned_cols=244 Identities=39% Similarity=0.634 Sum_probs=216.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
..++|+||+|++++++.|.+++.+ +..++.|..+|...++++||+||||||||++|+++|.+++ ++|+.+++++
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-----~p~i~is~s~ 251 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-----VPFFSISGSE 251 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeeeccHHH
Confidence 568999999999999999999877 8889999999999999999999999999999999999884 7889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
+...+.|.....++.+|..+....||||||||||.|+..++.. .......++.+||..|+++....+++||++||++
T Consensus 252 f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~ 331 (638)
T CHL00176 252 FVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRV 331 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCch
Confidence 9999999888999999999999999999999999998765432 2334567889999999998888899999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.+|++|+|||||+..|.|++|+.++|.+||+.++....... ...+..+|..+.||+++||.++|++|+..+.++..
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~-d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-- 408 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP-DVSLELIARRTPGFSGADLANLLNEAAILTARRKK-- 408 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch-hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999998854443 33458899999999999999999999988877642
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccC
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
..|+.+||..|+..+.
T Consensus 409 --------------~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 409 --------------ATITMKEIDTAIDRVI 424 (638)
T ss_pred --------------CCcCHHHHHHHHHHHH
Confidence 2488899999988764
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=312.60 Aligned_cols=334 Identities=21% Similarity=0.254 Sum_probs=258.6
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhc---
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL--- 727 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l--- 727 (1205)
...+.|.+++||...++.+.+.+ +-++.+++.|..+++.+ |.|+||+||||||||++|+|+|..+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmV---l~PLlyPE~f~~~~itp---------PrgvL~~GppGTGkTl~araLa~~~s~~ 326 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMV---LLPLLYPEFFDNFNITP---------PRGVLFHGPPGTGKTLMARALAAACSRG 326 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHH---HhHhhhhhHhhhcccCC---------CcceeecCCCCCchhHHHHhhhhhhccc
Confidence 44578999999998888887764 22556677777665432 5689999999999999999999875
Q ss_pred -ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhH-------HhHHHHHHHHHHHHHHhcCCCC
Q 000973 728 -EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW-------ENAHEQLRAVLLTLLEELPSHL 799 (1205)
Q Consensus 728 -~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~-------~~~~~~~~~~ll~lL~~~~~~~ 799 (1205)
.+..|+--++++.+++| +|+.|..++.+|..|++..|+|+|+||||-|+ ...+..++.+|+++|++++.+.
T Consensus 327 ~~kisffmrkgaD~lskw-vgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg 405 (1080)
T KOG0732|consen 327 NRKISFFMRKGADCLSKW-VGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG 405 (1080)
T ss_pred ccccchhhhcCchhhccc-cCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC
Confidence 34678888899999998 89999999999999999999999999999554 5577889999999999999999
Q ss_pred CeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcc
Q 000973 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (1205)
Q Consensus 800 ~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~ 877 (1205)
.|+||+|||++ +.+|+ +.++++| +.+.|++|+.+.|.+|+..+-++- . ++....-+..|+.. +
T Consensus 406 qVvvigATnRp-da~dp--aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw------~---~~i~~~l~~~la~~---t 470 (1080)
T KOG0732|consen 406 QVVVIGATNRP-DAIDP--ALRRPGRFDREFYFPLPDVDARAKILDIHTRKW------E---PPISRELLLWLAEE---T 470 (1080)
T ss_pred ceEEEcccCCc-cccch--hhcCCcccceeEeeeCCchHHHHHHHHHhccCC------C---CCCCHHHHHHHHHh---c
Confidence 99999999999 99999 7777776 888999999999999999988652 1 11222223445555 8
Q ss_pred CCCchhhhhHhH-HHHHHHHHH------------------HHHHHHHHhhhhh-----ccccccccccccCCCC-----C
Q 000973 878 SGPKASELKAKV-EAEQHALRR------------------LRMCLRDVCNRML-----YDKRFSAFHYPVTDED-----A 928 (1205)
Q Consensus 878 ~g~S~aELk~~~-ea~~~alre------------------lr~~lr~il~~l~-----~~k~~~~F~~Pv~~~~-----~ 928 (1205)
.||-|++|+++| +|.+.+++. .+..+..++..+. ..+.+..|..|+.+.. +
T Consensus 471 ~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~ 550 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPF 550 (1080)
T ss_pred cccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccch
Confidence 899999999999 898888765 1222223322222 2333556777776532 4
Q ss_pred ccchhhccCcchHHHHHhhccCCceeeeccccc--cchhhhcccccccCCCC-----CcceeeechhhhhhhHhhhhh-c
Q 000973 929 PNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQ--DVDLIVTNAKAYNGNDY-----NGTRIVSRGYELRDAVHGMLS-Q 1000 (1205)
Q Consensus 929 p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~--Dv~Li~~Na~~yN~~~~-----~~s~i~~~A~~l~~~~~~~~~-~ 1000 (1205)
++|..+|+++||+.....+++.+.|.++.+|.. ++.|||.|+..||+..- -+.-|.++++.+......+.. .
T Consensus 551 ~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll 630 (1080)
T KOG0732|consen 551 QDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLL 630 (1080)
T ss_pred HHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHH
Confidence 689999999999999999999999999999999 99999999999998752 233356666666665555554 2
Q ss_pred cChhHHHHHHHh
Q 000973 1001 MDPALVSYCDKI 1012 (1205)
Q Consensus 1001 ~~~~~~~~~~~~ 1012 (1205)
.++.+...|+.+
T Consensus 631 ~d~~~~~~~~~i 642 (1080)
T KOG0732|consen 631 SDEGTEDLEEEI 642 (1080)
T ss_pred hccccccHHHHH
Confidence 233244444433
No 44
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-28 Score=300.54 Aligned_cols=387 Identities=21% Similarity=0.271 Sum_probs=260.5
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-----CCeEEEEEe
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (1205)
.-.++-|+|.++.+..+.++++. +..++.+|+|+||+|||.+|..+|..+... .....++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 45677899999999999999876 556788999999999999999999998543 245667788
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 450 ~~~~l~--~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
+...++ .+|.|+++.+++.+++++....+.||||||||.|++.+...++ .-... +.|.....++.+-+||||
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAa----NiLKPaLARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAA----NLLKPALARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchh----hhhHHHHhcCCeEEEEec
Confidence 877776 4899999999999999999888999999999999998765442 11122 223333457889999999
Q ss_pred cccc-----cccccccCCCCccccccCCCCCchhhhhhhhcccccc----CCCCchhHHHHHhhhhhcccc-----hhHH
Q 000973 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYCG-----ADLK 593 (1205)
Q Consensus 528 n~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----~~~~~~~~l~~LA~~t~G~sg-----adI~ 593 (1205)
+.-+ .-|+||.| || ..|.+..|+.++...||+.+-..+ ++.++++.+...+..+..|-. .-.-
T Consensus 307 T~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7644 35899999 99 679999999999999998766654 445567777666666555432 2233
Q ss_pred HHhHHHHHHHHHHhC-Cc-----------ee-------ccC---CceEEe----------------ccceeeeehhhhhh
Q 000973 594 ALCTEAAIRAFREKY-PQ-----------VY-------TSD---DKFLID----------------VDSVTVEKYHFIEA 635 (1205)
Q Consensus 594 ~L~~eA~~~a~rr~~-~~-----------i~-------~~~---~~~~~d----------------~~~~~It~~df~~a 635 (1205)
.++.+|+........ +. +. ... .+..++ ... .|+.+++.++
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~v 462 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEV 462 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHH
Confidence 455555543322110 00 00 000 000000 000 0111222222
Q ss_pred hcccCccccccceecccccchhhhhHH------HHHHHHHhhhhh-hcCCCCccchhhh----hhhhcccCCcccccccc
Q 000973 636 MSTITPAAHRGATVHSRPLSLVVAPCL------QRHLQKAMNYIS-DIFPPLGMSSELT----KLCMLSHGSAIPLVYRP 704 (1205)
Q Consensus 636 l~~i~ps~~r~~~~~~~~~~~~~i~~l------~~~L~~~~~~l~-~i~p~~~~~~~~~----~l~~~~~G~~~P~~~~~ 704 (1205)
+. .|..+|-- ...|..+-..+. +|+ .+..++. .+.....|+..|.++..
T Consensus 463 v~-----------------~~TgIPv~~l~~~e~~kll~le~~L~~rVi---GQd~AV~avs~aIrraRaGL~dp~rPig 522 (786)
T COG0542 463 VA-----------------RWTGIPVAKLLEDEKEKLLNLERRLKKRVI---GQDEAVEAVSDAIRRARAGLGDPNRPIG 522 (786)
T ss_pred HH-----------------HHHCCChhhhchhhHHHHHHHHHHHhccee---ChHHHHHHHHHHHHHHhcCCCCCCCCce
Confidence 22 23333211 122222222222 222 2222221 22233567888887777
Q ss_pred eeeeecCCCCCCCccchhhhhhccc--CccccCCCccccC------------CCCCCChhhHHHHhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLS------------DPSAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~l~~------------~~~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
.+||.||+|+|||.||++||..+.+ -.+++++|++++- +| +|.-+ -.++....++.++|||+|
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGY-VGyee--GG~LTEaVRr~PySViLl 599 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGY-VGYEE--GGQLTEAVRRKPYSVILL 599 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCC-ceecc--ccchhHhhhcCCCeEEEe
Confidence 8999999999999999999999854 6899999998752 33 45433 345677778888899999
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHh--c-------CCCCCeEEeccCCcCC
Q 000973 771 PQFNLWWENAHEQLRAVLLTLLEE--L-------PSHLPILLLGSSSVPL 811 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~lL~~--~-------~~~~~v~vIattn~~~ 811 (1205)
|||++ ++..+++.|++.|+. + -++.+++||+|||.-.
T Consensus 600 DEIEK----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 600 DEIEK----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred chhhh----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccch
Confidence 99988 566888889999986 2 1378999999999763
No 45
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=1.4e-28 Score=313.53 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=177.4
Q ss_pred ccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHH--------------------
Q 000973 399 LLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-------------------- 458 (1205)
Q Consensus 399 l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~-------------------- 458 (1205)
........++|+.+|+||||+||||||||+||+|||.+++ ++|+.+++++++..+
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~-----VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~ 1690 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY-----VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDS 1690 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC-----CceEEEEHHHHhhcccccccccccccccccccccc
Confidence 3345556788999999999999999999999999999985 899999999988643
Q ss_pred ---------------------HHHHH--HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCc
Q 000973 459 ---------------------VGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL 515 (1205)
Q Consensus 459 ---------------------~g~~e--~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~ 515 (1205)
++.++ ..++.+|+.|+..+||||||||||+|+.... ....+.+|+..|++.
T Consensus 1691 ~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1691 DDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccc
Confidence 22222 3488999999999999999999999986521 123478899999876
Q ss_pred c---cCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCc--hhHHHHHhhhhhcccch
Q 000973 516 D---SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS--RELKSELAASCVGYCGA 590 (1205)
Q Consensus 516 ~---~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~--~~~l~~LA~~t~G~sga 590 (1205)
. ...+|+||||||+|+.|||||+|||||++.|+|+.|+..+|.+++..++...+..+. ...++.+|..|.||+||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 3 356799999999999999999999999999999999999999998765433333322 22358899999999999
Q ss_pred hHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000973 591 DLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 591 dI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
||.++|++|+..|+++... .|+..+|..|+.+....
T Consensus 1845 DLanLvNEAaliAirq~ks----------------~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKS----------------IIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCC----------------ccCHHHHHHHHHHHHhh
Confidence 9999999999999997643 47788899888877544
No 46
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.95 E-value=1.4e-27 Score=303.96 Aligned_cols=442 Identities=16% Similarity=0.153 Sum_probs=263.3
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
.-+++.++|++..+..+.+++.. ...+++||+||||||||++|+.||+.+.... ....++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34678899999988888776654 3456899999999999999999999885332 23556777
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000973 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 450 ~~~~l~--~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
+...+. ..+.|+++..++.+|..+.. ..++||||||||.|++.++..+.. .+.+.|+.. ..++.+.||||
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~----l~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPA----LARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHH----hhCCCeEEEEe
Confidence 776665 36889999999999999865 457899999999999766433221 122223333 34788999999
Q ss_pred ccccc-----cccccccCCCCccccccCCCCCchhhhhhhhcccccc----CCCCchhHHHHHhhhhhcccch-----hH
Q 000973 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYCGA-----DL 592 (1205)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----~~~~~~~~l~~LA~~t~G~sga-----dI 592 (1205)
|+..+ .+|++|.| || ..|.|+.|+.+++..||+.+...+ ++.++++.+..++..+.+|... ..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 98754 38999999 99 589999999999999987666543 4567888888888888877543 23
Q ss_pred HHHhHHHHHHHHHHhCC-cee------------------ccCCceEEecc-c-eeee--ehhhh----------------
Q 000973 593 KALCTEAAIRAFREKYP-QVY------------------TSDDKFLIDVD-S-VTVE--KYHFI---------------- 633 (1205)
Q Consensus 593 ~~L~~eA~~~a~rr~~~-~i~------------------~~~~~~~~d~~-~-~~It--~~df~---------------- 633 (1205)
-.|+.+|+......... ... ..+.....+.. . ..+. ...+.
T Consensus 400 Idlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (852)
T TIGR03345 400 VSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL 479 (852)
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544322211000 000 00000000000 0 0000 00000
Q ss_pred ---------------------------------hhhcccCcc-ccccceeccccc-----chhhhhHH------HHHHHH
Q 000973 634 ---------------------------------EAMSTITPA-AHRGATVHSRPL-----SLVVAPCL------QRHLQK 668 (1205)
Q Consensus 634 ---------------------------------~al~~i~ps-~~r~~~~~~~~~-----~~~~i~~l------~~~L~~ 668 (1205)
..+...... ..-...+....+ .|..+|.. ...|..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~ 559 (852)
T TIGR03345 480 VEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLS 559 (852)
T ss_pred HHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHH
Confidence 000000000 000000000000 13333221 122333
Q ss_pred Hhhhhh-hcCCCCccchhhhh----hhhcccCCcccccccceeeeecCCCCCCCccchhhhhhccc--CccccCCCcccc
Q 000973 669 AMNYIS-DIFPPLGMSSELTK----LCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALL 741 (1205)
Q Consensus 669 ~~~~l~-~i~p~~~~~~~~~~----l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~l~ 741 (1205)
+...+. +|+ .+...+.. +.....|...|.++...+||+||||||||++|++||..+.+ ..++.++++++.
T Consensus 560 l~~~L~~~v~---GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 560 LPDRLAERVI---GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred HHHHhcCeEc---ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 333332 222 22222221 11123455556443445899999999999999999998732 367788876642
Q ss_pred C------------CCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcC---------CCCC
Q 000973 742 S------------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP---------SHLP 800 (1205)
Q Consensus 742 ~------------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~---------~~~~ 800 (1205)
. +| +|..+. ..+....++.++|||+||||++.. ..+.+.|+++|+.-. ++.+
T Consensus 637 ~~~~~~~l~g~~~gy-vg~~~~--g~L~~~v~~~p~svvllDEieka~----~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 637 EAHTVSRLKGSPPGY-VGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH----PDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred hhhhhccccCCCCCc-cccccc--chHHHHHHhCCCcEEEEechhhcC----HHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 1 22 333221 123444556778999999998754 456677888887531 2578
Q ss_pred eEEeccCCcCCccccC--------------------CCccccCC----C-ceeeecCCCccchhhhHHHHHHHH
Q 000973 801 ILLLGSSSVPLAEVEG--------------------DPSTVFPL----R-SVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~--------------------~~~~~f~~----r-~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.+||+|||.....+.. .+...|+. | .+|.|.+.+.++...|+...+...
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999975332111 00111211 2 577789999999999999988764
No 47
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.95 E-value=5e-27 Score=300.73 Aligned_cols=425 Identities=19% Similarity=0.199 Sum_probs=270.3
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-----CCeEEEEEec
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMRK 450 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i~ 450 (1205)
-.++.|+|.+..+..+.+++.. ...+++||+||||||||++|+++|..+... .....++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4678899999999999998765 456789999999999999999999997532 2346788899
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 451 GADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 451 ~~~l~--~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
...++ .+|.|+++..++.+|+.+....++||||||||.|++.+...+.. .+.+.|... ..++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~----l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPA----LARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHH----HhCCCcEEEEeCC
Confidence 88877 47899999999999999988888999999999999776533321 222223333 3478899999998
Q ss_pred ccc-----cccccccCCCCccccccCCCCCchhhhhhhhccccc----cCCCCchhHHHHHhhhhhcccch-----hHHH
Q 000973 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYCGA-----DLKA 594 (1205)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----~~~~~~~~~l~~LA~~t~G~sga-----dI~~ 594 (1205)
..+ ..|++|.+ ||. .|.++.|+.++...|++..... ....++++++..++..+.+|.+. ..-.
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 864 37899999 995 5899999999999998765432 34457888888888888887653 2334
Q ss_pred HhHHHHHHHHHHhCCc---ee----------cc------CCceE----------------------------Eeccceee
Q 000973 595 LCTEAAIRAFREKYPQ---VY----------TS------DDKFL----------------------------IDVDSVTV 627 (1205)
Q Consensus 595 L~~eA~~~a~rr~~~~---i~----------~~------~~~~~----------------------------~d~~~~~I 627 (1205)
++.+|+.......... +. .. ..... .......|
T Consensus 393 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 472 (821)
T CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVV 472 (821)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Confidence 5555554322111000 00 00 00000 00000113
Q ss_pred eehhhhhhhcccCccccccceecccccchhhhhHH------HHHHHHHhhhhhh-cCCCCccchhhhhh----hhcccCC
Q 000973 628 EKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCL------QRHLQKAMNYISD-IFPPLGMSSELTKL----CMLSHGS 696 (1205)
Q Consensus 628 t~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l------~~~L~~~~~~l~~-i~p~~~~~~~~~~l----~~~~~G~ 696 (1205)
+.+|+..++.. |..+|-. ...|..+...+.+ |+ .+......+ .....|+
T Consensus 473 ~~~~i~~~~~~-----------------~tgip~~~~~~~~~~~l~~l~~~L~~~v~---GQ~~ai~~l~~~i~~~~~gl 532 (821)
T CHL00095 473 TEEDIAEIVSA-----------------WTGIPVNKLTKSESEKLLHMEETLHKRII---GQDEAVVAVSKAIRRARVGL 532 (821)
T ss_pred CHHHHHHHHHH-----------------HHCCCchhhchhHHHHHHHHHHHhcCcCc---ChHHHHHHHHHHHHHHhhcc
Confidence 33333333222 2222211 1222233333321 22 222222211 1123455
Q ss_pred cccccccceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC-----------CCCChhhHHHHhhcccccc
Q 000973 697 AIPLVYRPRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP-----------SAKTPEEALVHIFGEARRT 763 (1205)
Q Consensus 697 ~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~-----------~~g~se~~~~~lf~~A~~~ 763 (1205)
..|.++...+||+||+|||||++|++||+.+. ..++++++++++.... ++|..+ ...+...++..
T Consensus 533 ~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~ 610 (821)
T CHL00095 533 KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKK 610 (821)
T ss_pred cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhC
Confidence 55544344689999999999999999999863 3568888877653211 122211 22455555666
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhc---------CCCCCeEEeccCCcCCccccC------------------
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVPLAEVEG------------------ 816 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~---------~~~~~v~vIattn~~~~~Ld~------------------ 816 (1205)
+.+||||||||++.+ .+.+.|+++|+.- -++.+++||+|||.....+..
T Consensus 611 p~~VvllDeieka~~----~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~ 686 (821)
T CHL00095 611 PYTVVLFDEIEKAHP----DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQ 686 (821)
T ss_pred CCeEEEECChhhCCH----HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCccccccccccc
Confidence 679999999998654 5666777777752 125789999999975221110
Q ss_pred ----------CCccccC----CC--ceeeecCCCccchhhhHHHHHHHH
Q 000973 817 ----------DPSTVFP----LR--SVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 817 ----------~~~~~f~----~r--~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.+...|+ .| .|+.|.+.+.++...|++..+...
T Consensus 687 ~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 687 YKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred HHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 0000111 12 678899999999999999998764
No 48
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=1.8e-27 Score=296.26 Aligned_cols=246 Identities=36% Similarity=0.590 Sum_probs=216.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|+++.|.+.++..|.+++.+ +..+..+..++...++||||+||||||||++|+++|.+++ ++|+.+++++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f~~is~~~ 220 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSD 220 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEehHH
Confidence 457899999999999999999887 5677788888888899999999999999999999999985 6789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
+...++|.....++.+|..+....||||||||||.++..++.. +......++++||..|+++.....++||+|||++
T Consensus 221 ~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p 300 (644)
T PRK10733 221 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 300 (644)
T ss_pred hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCCh
Confidence 9999999999999999999999999999999999998776532 2334567899999999999888899999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000973 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.||++++|||||++.|.|++|+.++|.+||+.++....+..+.++ ..+|..+.||+|+||.++|++|+..|.+...
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~-~~la~~t~G~sgadl~~l~~eAa~~a~r~~~-- 377 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARGTPGFSGADLANLVNEAALFAARGNK-- 377 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH-HHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 9999999999999999999999999999999999998776555443 6799999999999999999999999887532
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000973 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
..|+..||..++..+.+.
T Consensus 378 --------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 --------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred --------------CcccHHHHHHHHHHHhcc
Confidence 248889999998876543
No 49
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-27 Score=270.81 Aligned_cols=209 Identities=18% Similarity=0.253 Sum_probs=171.9
Q ss_pred cchhhhhHH---HHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000973 654 LSLVVAPCL---QRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 654 ~~~~~i~~l---~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
+.+.++-|. +..|++++++ ++.+..|.++|. +.|+|+||+||||||||+||+|+|.+. +.
T Consensus 301 v~F~dVkG~DEAK~ELeEiVef-------LkdP~kftrLGG---------KLPKGVLLvGPPGTGKTlLARAvAGEA-~V 363 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEF-------LKDPTKFTRLGG---------KLPKGVLLVGPPGTGKTLLARAVAGEA-GV 363 (752)
T ss_pred cccccccChHHHHHHHHHHHHH-------hcCcHHhhhccC---------cCCCceEEeCCCCCchhHHHHHhhccc-CC
Confidence 445555444 5566666666 455778888873 335899999999999999999999998 99
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcCCCCCeEE
Q 000973 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPSHLPILL 803 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~~~~~v~v 803 (1205)
||+...++++-- .++|.....++.+|..|++.+||||||||||++... ...+.+++|+..||+.....+|||
T Consensus 364 PFF~~sGSEFdE-m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 364 PFFYASGSEFDE-MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred CeEeccccchhh-hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 999999888754 458888899999999999999999999999999843 345567777777777777899999
Q ss_pred eccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCc
Q 000973 804 LGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPK 881 (1205)
Q Consensus 804 Iattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S 881 (1205)
|++||.| +.||+ +.+|+|| ..+.|+.||...|.+||+.|+.++ ....++|+..|+.= ++|++
T Consensus 443 igATNfp-e~LD~--AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki----------~~~~~VD~~iiARG---T~GFs 506 (752)
T KOG0734|consen 443 IGATNFP-EALDK--ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI----------PLDEDVDPKIIARG---TPGFS 506 (752)
T ss_pred EeccCCh-hhhhH--HhcCCCccceeEecCCCCcccHHHHHHHHHhcC----------CcccCCCHhHhccC---CCCCc
Confidence 9999998 99999 7777776 777899999999999999999863 55678888888766 89999
Q ss_pred hhhhhHhH-HHHHHHH
Q 000973 882 ASELKAKV-EAEQHAL 896 (1205)
Q Consensus 882 ~aELk~~~-ea~~~al 896 (1205)
||||.+++ .|+..+-
T Consensus 507 GAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 507 GADLANLVNQAALKAA 522 (752)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 99999999 6666553
No 50
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=4.7e-27 Score=263.08 Aligned_cols=221 Identities=20% Similarity=0.266 Sum_probs=171.9
Q ss_pred cccccccc-CChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 374 ESVSFDDI-GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 374 ~~~~~~~i-~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
...+|++| +|+--...=+..++... ........++++|++++||||||||||++|++||++++ ++|+.+++.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi--~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~ 182 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI--AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAG 182 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH--HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHH
Confidence 34677777 66655554444443221 12233346789999999999999999999999999996 789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-----cCCceEEEeccCCcccccchhhhHHHHHHH-HHHHHHhhCc-----------
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIV-STLLALMDGL----------- 515 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~-----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~-~~Ll~~ld~~----------- 515 (1205)
++.++|+|++++.++.+|..|.. .+||||||||||++++.+...+.....+++ .+|+++||+.
T Consensus 183 eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~ 262 (413)
T PLN00020 183 ELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWRE 262 (413)
T ss_pred HhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccc
Confidence 99999999999999999999975 469999999999999988655444444554 8999998853
Q ss_pred -ccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc----ccch
Q 000973 516 -DSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG----YCGA 590 (1205)
Q Consensus 516 -~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G----~sga 590 (1205)
.....|+||+|||+|+.||++|+|+|||+..| ..|+.++|.+||+.+++..++. ...+..|+..+.| |.|+
T Consensus 263 ~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~--~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 263 KEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS--REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred cccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC--HHHHHHHHHcCCCCCchhhhH
Confidence 23567999999999999999999999999865 5899999999999999987654 4445677777665 4555
Q ss_pred hHHHHhHHHHHHHHH
Q 000973 591 DLKALCTEAAIRAFR 605 (1205)
Q Consensus 591 dI~~L~~eA~~~a~r 605 (1205)
--..+..++...-+.
T Consensus 339 lrar~yd~~v~~~i~ 353 (413)
T PLN00020 339 LRARVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
No 51
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-27 Score=265.08 Aligned_cols=218 Identities=22% Similarity=0.324 Sum_probs=184.6
Q ss_pred ccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCcc
Q 000973 653 PLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPV 732 (1205)
Q Consensus 653 ~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~ 732 (1205)
.+.|.++++|+...+.+.+.+ +-++..++.|.+..+ ++++.|+||+||||||||+||+|+|.+. +.+|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~V---ilPlr~pelF~~g~L--------l~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~f 155 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELV---ILPLRRPELFAKGKL--------LRPPKGILLYGPPGTGKTMLAKAIAKEA-GANF 155 (386)
T ss_pred eeehhhccchHHHHHHHHHHH---hhcccchhhhccccc--------ccCCccceecCCCCchHHHHHHHHHHHc-CCCc
Confidence 467999999988777776653 225666777764332 2246799999999999999999999998 8999
Q ss_pred ccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcCC--CCCeEE
Q 000973 733 HSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS--HLPILL 803 (1205)
Q Consensus 733 ~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~~--~~~v~v 803 (1205)
+.++++.+.++|| |+.++.++.+|..|.+..||||||||+|+.+.. +...+.++|..++|++.. ...|+|
T Consensus 156 Inv~~s~lt~KWf-gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 156 INVSVSNLTSKWF-GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred ceeeccccchhhH-HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 9999999999996 999999999999999999999999999999832 345678999999999965 346999
Q ss_pred eccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchh
Q 000973 804 LGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKAS 883 (1205)
Q Consensus 804 Iattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~a 883 (1205)
+||||+| .+||+ +.+++....|+|++|+..+|.+|++.+|.+ .+...++|+.+++.. +.||||+
T Consensus 235 lgATNRP-~DlDe--AiiRR~p~rf~V~lP~~~qR~kILkviLk~----------e~~e~~vD~~~iA~~---t~GySGS 298 (386)
T KOG0737|consen 235 LGATNRP-FDLDE--AIIRRLPRRFHVGLPDAEQRRKILKVILKK----------EKLEDDVDLDEIAQM---TEGYSGS 298 (386)
T ss_pred EeCCCCC-ccHHH--HHHHhCcceeeeCCCchhhHHHHHHHHhcc----------cccCcccCHHHHHHh---cCCCcHH
Confidence 9999999 89999 777776799999999999999999999975 255678999999988 8999999
Q ss_pred hhhHhH-HHHHHHHHHH
Q 000973 884 ELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 884 ELk~~~-ea~~~alrel 899 (1205)
+|+++| .|....+|++
T Consensus 299 DLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 299 DLKELCRLAALRPIREL 315 (386)
T ss_pred HHHHHHHHHhHhHHHHH
Confidence 999999 7777666663
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-28 Score=262.73 Aligned_cols=225 Identities=18% Similarity=0.277 Sum_probs=184.0
Q ss_pred ccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhh
Q 000973 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala 724 (1205)
....+..+.+.|.++.||+...+.+.+.+ +-++..+..|. |...| -.++||||||||||++||+|+|
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAV---ILPIKFPqlFt-------GkR~P---wrgiLLyGPPGTGKSYLAKAVA 187 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAV---ILPIKFPQLFT-------GKRKP---WRGILLYGPPGTGKSYLAKAVA 187 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhhe---eecccchhhhc-------CCCCc---ceeEEEeCCCCCcHHHHHHHHH
Confidence 34556788999999999977777666653 22455554443 22223 2589999999999999999999
Q ss_pred hhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcC-
Q 000973 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP- 796 (1205)
Q Consensus 725 ~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~- 796 (1205)
.+. +..|++++.++|+++| .|++|+.++++|..|+...|+||||||||.++.. .+.++...|+-.|+++.
T Consensus 188 TEA-nSTFFSvSSSDLvSKW-mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 188 TEA-NSTFFSVSSSDLVSKW-MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred hhc-CCceEEeehHHHHHHH-hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc
Confidence 998 6899999999999999 8999999999999999999999999999999833 56788999999999995
Q ss_pred CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCc
Q 000973 797 SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTV 876 (1205)
Q Consensus 797 ~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~ 876 (1205)
+..+|+|+++||-| +.||. +.++++...|+||+|....|..+|+.++... .......|+.+|+..
T Consensus 266 d~~gvLVLgATNiP-w~LDs--AIRRRFekRIYIPLPe~~AR~~MF~lhlG~t---------p~~LT~~d~~eL~~k--- 330 (439)
T KOG0739|consen 266 DNDGVLVLGATNIP-WVLDS--AIRRRFEKRIYIPLPEAHARARMFKLHLGDT---------PHVLTEQDFKELARK--- 330 (439)
T ss_pred CCCceEEEecCCCc-hhHHH--HHHHHhhcceeccCCcHHHhhhhheeccCCC---------ccccchhhHHHHHhh---
Confidence 47799999999998 99999 6666666778899999999999999999642 233456778888888
Q ss_pred cCCCchhhhhHhH-HHHHHHHHHH
Q 000973 877 ESGPKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 877 ~~g~S~aELk~~~-ea~~~alrel 899 (1205)
+.||||++|--++ .+.++..|..
T Consensus 331 TeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 331 TEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCCcCceEEEehhhhhhhHHHh
Confidence 8999999988777 6666666653
No 53
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-27 Score=248.68 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=185.5
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.++-.+..+++|...++++.+.|. -++.+++.|..+|+.+ |.|+|||||||||||+||+|+||.. .+
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIe---LPvKHPELF~aLGIaQ---------PKGvlLygppgtGktLlaraVahht-~c 207 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIE---LPVKHPELFEALGIAQ---------PKGVLLYGPPGTGKTLLARAVAHHT-DC 207 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHh---ccccCHHHHHhcCCCC---------CcceEEecCCCCchhHHHHHHHhhc-ce
Confidence 344567789999999988887643 2678889998887532 4799999999999999999999997 78
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHH---HhcCCCCC
Q 000973 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLL---EELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL---~~~~~~~~ 800 (1205)
.|+++++++|+.+| +|+....++++|-.|+..+|+|+|.||||++.+. ....+..+.+.+| ++.+...+
T Consensus 208 ~firvsgselvqk~-igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 208 TFIRVSGSELVQKY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred EEEEechHHHHHHH-hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 99999999999987 8999999999999999999999999999999843 1234445555555 45566789
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000973 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
|-||++||+. +.||+ +.++++| +.|+||+|+.+.|..|++.|-+++ ......++..++.. ..
T Consensus 287 ikvimatnri-dild~--allrpgridrkiefp~p~e~ar~~ilkihsrkm----------nl~rgi~l~kiaek---m~ 350 (404)
T KOG0728|consen 287 IKVIMATNRI-DILDP--ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM----------NLTRGINLRKIAEK---MP 350 (404)
T ss_pred eEEEEecccc-ccccH--hhcCCCcccccccCCCCCHHHHHHHHHHhhhhh----------chhcccCHHHHHHh---CC
Confidence 9999999998 99999 8899987 889999999999999999999875 34556777777766 88
Q ss_pred CCchhhhhHhH-HHHHHHHHHHH
Q 000973 879 GPKASELKAKV-EAEQHALRRLR 900 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alrelr 900 (1205)
|.||+|++..| +|-+.++|+-+
T Consensus 351 gasgaevk~vcteagm~alrerr 373 (404)
T KOG0728|consen 351 GASGAEVKGVCTEAGMYALRERR 373 (404)
T ss_pred CCccchhhhhhhhhhHHHHHHhh
Confidence 99999999999 99999998844
No 54
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-27 Score=251.49 Aligned_cols=223 Identities=17% Similarity=0.216 Sum_probs=188.2
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+.-++.+++||+..++++.+.+. -++-+++.+...|+ ++|.|++|||+||||||+||+|+|+.- ..
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvE---LPLthPE~YeemGi---------kpPKGVIlyG~PGTGKTLLAKAVANqT-SA 245 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVE---LPLTHPEYYEEMGI---------KPPKGVILYGEPGTGKTLLAKAVANQT-SA 245 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhc---CCCCCHHHHHHcCC---------CCCCeeEEeCCCCCchhHHHHHHhccc-ch
Confidence 345578899999999999998753 26677888887764 336899999999999999999999987 78
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHH---hcCCCCC
Q 000973 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLE---ELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~---~~~~~~~ 800 (1205)
.|+++-+++|+.+| .|+..+.++++|..|...+|+|+||||||++... ....+..+++.+|. +.+++..
T Consensus 246 TFlRvvGseLiQky-lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD 324 (440)
T KOG0726|consen 246 TFLRVVGSELIQKY-LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324 (440)
T ss_pred hhhhhhhHHHHHHH-hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC
Confidence 99999999999998 6888999999999999999999999999999722 22344455555554 5566889
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000973 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
|-||++||+. +.||| +.++++| +.|+|++|+...+..||..|..++ ....++.+++|... ..
T Consensus 325 vKvimATnri-e~LDP--aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M----------tl~~dVnle~li~~---kd 388 (440)
T KOG0726|consen 325 VKVIMATNRI-ETLDP--ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM----------TLAEDVNLEELIMT---KD 388 (440)
T ss_pred eEEEEecccc-cccCH--hhcCCCccccccccCCCchhhhceeEEEeeccc----------chhccccHHHHhhc---cc
Confidence 9999999999 99999 8899987 889999999999999999998765 45677888888776 67
Q ss_pred CCchhhhhHhH-HHHHHHHHHHHHHH
Q 000973 879 GPKASELKAKV-EAEQHALRRLRMCL 903 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alrelr~~l 903 (1205)
.+|||+|+++| +|-+.++|+-|++.
T Consensus 389 dlSGAdIkAictEaGllAlRerRm~v 414 (440)
T KOG0726|consen 389 DLSGADIKAICTEAGLLALRERRMKV 414 (440)
T ss_pred ccccccHHHHHHHHhHHHHHHHHhhc
Confidence 88999999999 99999999866553
No 55
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.93 E-value=2.5e-25 Score=285.76 Aligned_cols=204 Identities=24% Similarity=0.271 Sum_probs=149.5
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-----CCeEEEEEe
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-----GQKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~~~~~~~~i 449 (1205)
.-.++.++|++..+..+.+++.. ...++++|+||||||||++|+++|..+... .....++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34678899999998888887655 445689999999999999999999987432 123566777
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000973 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 450 ~~~~l~--~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
+...++ .+|.|+.+..++.+|..+.. ..++||||||||.|++.+...+.. .+.+.|. ....++.+.|||+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~~~Lk----~~l~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM---DAGNMLK----PALARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh---HHHHHhc----hhhhcCceEEEEe
Confidence 766665 47889999999999998865 458899999999998765433221 1222222 3335788999999
Q ss_pred ccccc-----cccccccCCCCccccccCCCCCchhhhhhhhccccccC----CCCchhHHHHHhhhhhcccch-----hH
Q 000973 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYCGA-----DL 592 (1205)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~----~~~~~~~l~~LA~~t~G~sga-----dI 592 (1205)
|+..+ .+|++|.| ||. .|.++.|+.+++..||+.+...+. +.+.+..+..++..+.+|... -.
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 99864 37999999 995 589999999999999987766543 445666667777777666532 23
Q ss_pred HHHhHHHHH
Q 000973 593 KALCTEAAI 601 (1205)
Q Consensus 593 ~~L~~eA~~ 601 (1205)
-.|+.+|+.
T Consensus 386 idlld~a~a 394 (852)
T TIGR03346 386 IDLIDEAAA 394 (852)
T ss_pred HHHHHHHHH
Confidence 344555543
No 56
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-26 Score=242.14 Aligned_cols=218 Identities=18% Similarity=0.243 Sum_probs=185.6
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+.-.+.+++||.+.++++++. |+-++.+.+.|.++|+. +|.|+|+|||||||||++|+|.|..- +.
T Consensus 165 kPtE~YsDiGGldkQIqELvEA---iVLpmth~ekF~~lgi~---------pPKGvLmYGPPGTGKTlmARAcAaqT-~a 231 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEA---IVLPMTHKEKFENLGIR---------PPKGVLMYGPPGTGKTLMARACAAQT-NA 231 (424)
T ss_pred CCcccccccccHHHHHHHHHHH---hccccccHHHHHhcCCC---------CCCceEeeCCCCCcHHHHHHHHHHhc-cc
Confidence 3445688999999999999987 44567788899988753 36799999999999999999999987 78
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh------H-HHHHHHHHHHH---HHhcCCCCC
Q 000973 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN------A-HEQLRAVLLTL---LEELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~------~-~~~~~~~ll~l---L~~~~~~~~ 800 (1205)
.|+.+-+|.|+.. |+|...+.++..|..|+..+|+||||||+|++... . ...+..+++.+ |++..+...
T Consensus 232 TFLKLAgPQLVQM-fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~ 310 (424)
T KOG0652|consen 232 TFLKLAGPQLVQM-FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDR 310 (424)
T ss_pred hHHHhcchHHHhh-hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccc
Confidence 8999999999865 48999999999999999999999999999999732 1 12344444444 455566789
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000973 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
|-|||+||+. +.||| +.++++| +.|+||.|+.+.|..|++.|-+++ ....++.+++|+.. +.
T Consensus 311 vKviAATNRv-DiLDP--ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM----------nv~~DvNfeELaRs---Td 374 (424)
T KOG0652|consen 311 VKVIAATNRV-DILDP--ALLRSGRLDRKIEFPHPNEEARARILQIHSRKM----------NVSDDVNFEELARS---TD 374 (424)
T ss_pred eEEEeecccc-cccCH--HHhhcccccccccCCCCChHHHHHHHHHhhhhc----------CCCCCCCHHHHhhc---cc
Confidence 9999999998 99999 8888887 889999999999999999999875 45678999999988 88
Q ss_pred CCchhhhhHhH-HHHHHHHHH
Q 000973 879 GPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alre 898 (1205)
+|.|+++++.| ++-+.++|+
T Consensus 375 dFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 375 DFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred ccCchhheeeehhhhHHHHhc
Confidence 99999999999 999999887
No 57
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-26 Score=241.28 Aligned_cols=223 Identities=15% Similarity=0.216 Sum_probs=182.4
Q ss_pred cccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhccc
Q 000973 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (1205)
Q Consensus 650 ~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~ 729 (1205)
..+.+++.+++|+.-..+++.+.+.- ++-+.+.+.++|+ .+ |.|+|+|||||||||+||+|+|+.- .
T Consensus 148 ekpdvsy~diggld~qkqeireavel---plt~~~ly~qigi-----dp----prgvllygppg~gktml~kava~~t-~ 214 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVEL---PLTHADLYKQIGI-----DP----PRGVLLYGPPGTGKTMLAKAVANHT-T 214 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhc---cchHHHHHHHhCC-----CC----CcceEEeCCCCCcHHHHHHHHhhcc-c
Confidence 45678889999987666666665321 5566677777764 32 4799999999999999999999987 7
Q ss_pred CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHH---HHHHhcCCCC
Q 000973 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLL---TLLEELPSHL 799 (1205)
Q Consensus 730 ~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll---~lL~~~~~~~ 799 (1205)
..|+++.+++++.+| .|+.-..++.+|..|+..+|+||||||||++... ....+...|+ +.|++.+...
T Consensus 215 a~firvvgsefvqky-lgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 215 AAFIRVVGSEFVQKY-LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred hheeeeccHHHHHHH-hccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 889999999999998 6888899999999999999999999999999843 2233444444 4455556678
Q ss_pred CeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcc
Q 000973 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (1205)
Q Consensus 800 ~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~ 877 (1205)
+|-||++||+. +.||| +.+++|| ..|+||+|+..+++-+|..+..++ .....+||+.+..- +
T Consensus 294 nvkvimatnra-dtldp--allrpgrldrkiefplpdrrqkrlvf~titskm----------~ls~~vdle~~v~r---p 357 (408)
T KOG0727|consen 294 NVKVIMATNRA-DTLDP--ALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM----------NLSDEVDLEDLVAR---P 357 (408)
T ss_pred ceEEEEecCcc-cccCH--hhcCCccccccccCCCCchhhhhhhHHhhhhcc----------cCCcccCHHHHhcC---c
Confidence 99999999998 99999 9999987 889999999999999999988765 45677888887655 6
Q ss_pred CCCchhhhhHhH-HHHHHHHHHHHHH
Q 000973 878 SGPKASELKAKV-EAEQHALRRLRMC 902 (1205)
Q Consensus 878 ~g~S~aELk~~~-ea~~~alrelr~~ 902 (1205)
...|+++|.++| ++-+++.|.-++.
T Consensus 358 dkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 358 DKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred cccchhhHHHHHHHHhHHHHHhccee
Confidence 678999999999 9999999986654
No 58
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.93 E-value=8.1e-27 Score=244.91 Aligned_cols=178 Identities=19% Similarity=0.302 Sum_probs=154.9
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh---
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--- 779 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~--- 779 (1205)
|..+|||||||||||++|+|+|++. +.||+.++...|++.+ +|.....++++|..|++++|||+||||+|++.-.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~-kvp~l~vkat~liGeh-VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRry 228 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEA-KVPLLLVKATELIGEH-VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRY 228 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhccc-CCceEEechHHHHHHH-hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhH
Confidence 4689999999999999999999998 8999999999999887 8999999999999999999999999999999722
Q ss_pred -----HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhh
Q 000973 780 -----AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVL 854 (1205)
Q Consensus 780 -----~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~ 854 (1205)
.-..++++|++.|+++..+.+|+.||+||+| ..||+.+.++|. .-|+|.+|+.++|..|++.++.++
T Consensus 229 QelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p-~~LD~aiRsRFE--eEIEF~LP~~eEr~~ile~y~k~~----- 300 (368)
T COG1223 229 QELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP-ELLDPAIRSRFE--EEIEFKLPNDEERLEILEYYAKKF----- 300 (368)
T ss_pred HHhcccHHHHHHHHHHhccCcccCCceEEEeecCCh-hhcCHHHHhhhh--heeeeeCCChHHHHHHHHHHHHhC-----
Confidence 2346789999999999999999999999998 999997777777 889999999999999999999864
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH--HHHHHHHHH
Q 000973 855 EGRSKKPQESVSLPELPKVPTVESGPKASELKAKV--EAEQHALRR 898 (1205)
Q Consensus 855 ~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~--ea~~~alre 898 (1205)
+...+.++..|+.. +.|+|+.+|+..+ .+...++.+
T Consensus 301 -----Plpv~~~~~~~~~~---t~g~SgRdikekvlK~aLh~Ai~e 338 (368)
T COG1223 301 -----PLPVDADLRYLAAK---TKGMSGRDIKEKVLKTALHRAIAE 338 (368)
T ss_pred -----CCccccCHHHHHHH---hCCCCchhHHHHHHHHHHHHHHHh
Confidence 44455666677666 8899999999887 444445544
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.93 E-value=3.3e-25 Score=283.32 Aligned_cols=190 Identities=22% Similarity=0.270 Sum_probs=142.4
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEec
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRK 450 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~ 450 (1205)
-.++.++|++..+..+.++++. ...+++||+||||||||++|++||..+.... ....++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4678899999998888887765 4456899999999999999999999985321 245667777
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 451 GADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 451 ~~~l~--~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
...++ .+|.|+.+..++.+|..+.. ..++||||||||.|++.+...+.. ...+.|. ....++.+.|||+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~lk----p~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLK----PALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHhc----chhhcCCCeEEEcC
Confidence 76665 46889999999999998654 568899999999999776443321 1222232 33457899999999
Q ss_pred cccc-----cccccccCCCCccccccCCCCCchhhhhhhhccccccC----CCCchhHHHHHhhhhhccc
Q 000973 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 528 n~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~----~~~~~~~l~~LA~~t~G~s 588 (1205)
+..+ .+|++|.| ||. .|.++.|+.+++..||+.+...+. +.+.++.+...+..+.+|.
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 9876 38999999 996 588999999999999988776543 3445555555555555443
No 60
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-26 Score=272.72 Aligned_cols=216 Identities=21% Similarity=0.290 Sum_probs=179.1
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000973 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
..+.+.++.|..+..+++++.+. .+..++.|.++|. +.|+|+||+||||||||+||||+|.+. ++|
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~----fLKNP~~Y~~lGA---------KiPkGvLL~GPPGTGKTLLAKAiAGEA-gVP 371 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK----FLKNPEQYQELGA---------KIPKGVLLVGPPGTGKTLLAKAIAGEA-GVP 371 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH----HhcCHHHHHHcCC---------cCcCceEEECCCCCcHHHHHHHHhccc-CCc
Confidence 34677777777666666655532 3567888888874 235799999999999999999999998 999
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-----------HHHHHHHHHHHHHHhcCCCCC
Q 000973 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-----------AHEQLRAVLLTLLEELPSHLP 800 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-----------~~~~~~~~ll~lL~~~~~~~~ 800 (1205)
|+++++++++-.+ +|.-...++.+|..|+..+|||+||||||.+... ..+..+++|+..||+......
T Consensus 372 F~svSGSEFvE~~-~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 372 FFSVSGSEFVEMF-VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred eeeechHHHHHHh-cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 9999999998765 5555778999999999999999999999998732 346778889999999988899
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCC-CCCCCCCCCCCCCCcc
Q 000973 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKP-QESVSLPELPKVPTVE 877 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~-~~~~~l~~Lp~~~~~~ 877 (1205)
|+|||+||++ +.||+ +.+++|| +.++|++|+...|..||+.|+++. +. ...+++..|+.. +
T Consensus 451 vi~~a~tnr~-d~ld~--allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----------~~~~e~~dl~~~a~~---t 514 (774)
T KOG0731|consen 451 VIVLAATNRP-DILDP--ALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----------KLDDEDVDLSKLASL---T 514 (774)
T ss_pred EEEEeccCCc-cccCH--HhcCCCccccceeccCCchhhhHHHHHHHhhcc----------CCCcchhhHHHHHhc---C
Confidence 9999999998 99999 7788877 888899999999999999999862 22 344555555555 8
Q ss_pred CCCchhhhhHhH-HHHHHHHHH
Q 000973 878 SGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 878 ~g~S~aELk~~~-ea~~~alre 898 (1205)
+|++|++|.++| +++..+.|+
T Consensus 515 ~gf~gadl~n~~neaa~~a~r~ 536 (774)
T KOG0731|consen 515 PGFSGADLANLCNEAALLAARK 536 (774)
T ss_pred CCCcHHHHHhhhhHHHHHHHHh
Confidence 999999999999 998888875
No 61
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-25 Score=235.42 Aligned_cols=225 Identities=14% Similarity=0.184 Sum_probs=183.7
Q ss_pred ceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhh
Q 000973 647 ATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 647 ~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~ 726 (1205)
.....+.+.+.+++|-++.++++.+.+.- ++.+++.|.++|+. +|.|+|+|||||||||++|+|+|+.
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~---pll~perfv~lgid---------ppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVEL---PLLHPERFVNLGID---------PPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhc---cccCHHHHhhcCCC---------CCCceEEeCCCCCchhHHHHHHhcc
Confidence 33457788999999998887777665322 56678888888752 2579999999999999999999998
Q ss_pred cccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHH---HHHHHhcC
Q 000973 727 LEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVL---LTLLEELP 796 (1205)
Q Consensus 727 l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~l---l~lL~~~~ 796 (1205)
- +..|+++-+++|+.+| +|+....++++|..|+...-|||||||||++... ....+..++ ++.|++.+
T Consensus 235 t-dacfirvigselvqky-vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd 312 (435)
T KOG0729|consen 235 T-DACFIRVIGSELVQKY-VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 312 (435)
T ss_pred c-CceEEeehhHHHHHHH-hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC
Confidence 7 7889999999999988 8999999999999999999999999999999733 122344444 44556667
Q ss_pred CCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 000973 797 SHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVP 874 (1205)
Q Consensus 797 ~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~ 874 (1205)
++.+|-|+++||+| +.||+ +.++++| ..++|.+|+.+.|.+||+.|.+.+ ....+.-++-|+.+
T Consensus 313 prgnikvlmatnrp-dtldp--allrpgrldrkvef~lpdlegrt~i~kihaksm----------sverdir~ellarl- 378 (435)
T KOG0729|consen 313 PRGNIKVLMATNRP-DTLDP--ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM----------SVERDIRFELLARL- 378 (435)
T ss_pred CCCCeEEEeecCCC-CCcCH--hhcCCcccccceeccCCcccccceeEEEecccc----------ccccchhHHHHHhh-
Confidence 78899999999999 99999 8999987 889999999999999999998753 23345556667777
Q ss_pred CccCCCchhhhhHhH-HHHHHHHHHHHH
Q 000973 875 TVESGPKASELKAKV-EAEQHALRRLRM 901 (1205)
Q Consensus 875 ~~~~g~S~aELk~~~-ea~~~alrelr~ 901 (1205)
.+..+|+||...| ++-+.++|.-+.
T Consensus 379 --cpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 379 --CPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred --CCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 5567899999999 999999877543
No 62
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.4e-25 Score=250.50 Aligned_cols=221 Identities=19% Similarity=0.277 Sum_probs=186.4
Q ss_pred cccchh--hhhHHHHHHHHHhhh--hhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhc
Q 000973 652 RPLSLV--VAPCLQRHLQKAMNY--ISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 652 ~~~~~~--~i~~l~~~L~~~~~~--l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
+.+.+. .++||+..+..+... ..++|| ++-..++|+.+ -+|+|||||||||||++|+.|+..|
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp----p~vie~lGi~H---------VKGiLLyGPPGTGKTLiARqIGkML 280 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFP----PEVIEQLGIKH---------VKGILLYGPPGTGKTLIARQIGKML 280 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCC----HHHHHHcCccc---------eeeEEEECCCCCChhHHHHHHHHHh
Confidence 444444 478998888877553 467787 45566676533 3689999999999999999999999
Q ss_pred ccCccccCCCccccCCCCCCChhhHHHHhhccccc--------cCCceeeeccchhhHH---------hHHHHHHHHHHH
Q 000973 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR--------TTPSILYIPQFNLWWE---------NAHEQLRAVLLT 790 (1205)
Q Consensus 728 ~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~--------~~p~ILfiDEid~l~~---------~~~~~~~~~ll~ 790 (1205)
+...--.+++|+++++| +|++|++++.+|..|.. ..-.||+|||||+++. ++++.++++|++
T Consensus 281 NArePKIVNGPeIL~KY-VGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLs 359 (744)
T KOG0741|consen 281 NAREPKIVNGPEILNKY-VGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLS 359 (744)
T ss_pred cCCCCcccCcHHHHHHh-hcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHH
Confidence 88888889999999998 89999999999998864 3457999999999993 378999999999
Q ss_pred HHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000973 791 LLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLP 868 (1205)
Q Consensus 791 lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~ 868 (1205)
-||+++.-.+|+||+.||+. +.||+ +.+|+|| ..++|.+|++..|.+||+.|..++.. ......++|+.
T Consensus 360 KmDGVeqLNNILVIGMTNR~-DlIDE--ALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre------~~~l~~dVdl~ 430 (744)
T KOG0741|consen 360 KMDGVEQLNNILVIGMTNRK-DLIDE--ALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE------NNKLSADVDLK 430 (744)
T ss_pred hcccHHhhhcEEEEeccCch-hhHHH--HhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh------cCCCCCCcCHH
Confidence 99999999999999999998 99999 9999998 66789999999999999999988742 35778899999
Q ss_pred CCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 869 ELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 869 ~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+|+.. +..||||||+.++ .|.-.++.+
T Consensus 431 elA~l---TKNfSGAEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 431 ELAAL---TKNFSGAELEGLVKSAQSFAMNR 458 (744)
T ss_pred HHHHH---hcCCchhHHHHHHHHHHHHHHHh
Confidence 99988 7889999999999 555555543
No 63
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.90 E-value=2e-24 Score=253.59 Aligned_cols=220 Identities=16% Similarity=0.205 Sum_probs=175.7
Q ss_pred cccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhccc
Q 000973 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (1205)
Q Consensus 650 ~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~ 729 (1205)
..+.+.|.+++|++...+++.+.+.. ++..+..|.++|+ . ++.++||+||||||||++|+++|+++ +
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~---pl~~~~~~~~~Gl-----~----~pkgvLL~GppGTGKT~LAkalA~~l-~ 204 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVEL---PLTCPELYEQIGI-----D----PPRGVLLYGPPGTGKTMLAKAVAHHT-T 204 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHH---HhcCHHHHHhcCC-----C----CCceEEEECCCCCCHHHHHHHHHHhc-C
Confidence 45778999999998888888776432 3444566666553 2 24789999999999999999999998 7
Q ss_pred CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCC
Q 000973 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHL 799 (1205)
Q Consensus 730 ~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~ 799 (1205)
.+|+.+..+.++.+| .|+++..++.+|..|+...||||||||||.++.. ...+++..|+..|+++....
T Consensus 205 ~~fi~i~~s~l~~k~-~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 205 ATFIRVVGSEFVQKY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred CCEEEEehHHHHHHh-cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 899999888888877 7999999999999999999999999999998732 12234445555666666667
Q ss_pred CeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcc
Q 000973 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (1205)
Q Consensus 800 ~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~ 877 (1205)
+|+||+|||++ +.||+ +.++++| ..|+|++|+.++|..||+.++.++ ....++++..|+.. +
T Consensus 284 ~v~VI~aTN~~-d~LDp--AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~----------~l~~dvd~~~la~~---t 347 (398)
T PTZ00454 284 NVKVIMATNRA-DTLDP--ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM----------NLSEEVDLEDFVSR---P 347 (398)
T ss_pred CEEEEEecCCc-hhCCH--HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----------CCCcccCHHHHHHH---c
Confidence 89999999998 89999 5555444 788999999999999999988652 33456777777766 8
Q ss_pred CCCchhhhhHhH-HHHHHHHHHH
Q 000973 878 SGPKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 878 ~g~S~aELk~~~-ea~~~alrel 899 (1205)
.|+++++|+++| +|.+.++++-
T Consensus 348 ~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 348 EKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 899999999999 8888887764
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=9.1e-24 Score=249.26 Aligned_cols=221 Identities=20% Similarity=0.274 Sum_probs=173.5
Q ss_pred eecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhc
Q 000973 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
....+.+.|.+++|++..++++.+.+.. ++..+..|..+| ... +.++||+||||||||++|+++|+.+
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~---pl~~~~~~~~~g-----~~~----p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVEL---PLKKPELFEEVG-----IEP----PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHH---HhhCHHHHHhcC-----CCC----CCceEEECCCCCChHHHHHHHHHHh
Confidence 4456788999999999998888776432 344455555554 232 4689999999999999999999998
Q ss_pred ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH-------HHHHHHHHHHHH---HhcCC
Q 000973 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-------HEQLRAVLLTLL---EELPS 797 (1205)
Q Consensus 728 ~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~-------~~~~~~~ll~lL---~~~~~ 797 (1205)
+.+|+.++.+.++..| .|+++..++.+|..|+...||||||||||.++... ...+...|..+| +++..
T Consensus 190 -~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 190 -NATFIRVVGSELVQKF-IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -CCCEEEeehHHHhHhh-ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 7899999999998877 78999999999999999999999999999997321 123334444444 44555
Q ss_pred CCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Q 000973 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (1205)
Q Consensus 798 ~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~ 875 (1205)
..+|+||+|||++ +.||+ +.++++| .+++|++|+.++|..||+.++... ....+.++..|+..
T Consensus 268 ~~~v~VI~aTn~~-~~ld~--allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~----------~~~~~~~~~~la~~-- 332 (389)
T PRK03992 268 RGNVKIIAATNRI-DILDP--AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM----------NLADDVDLEELAEL-- 332 (389)
T ss_pred CCCEEEEEecCCh-hhCCH--HHcCCccCceEEEECCCCHHHHHHHHHHHhccC----------CCCCcCCHHHHHHH--
Confidence 6789999999998 88998 5554333 789999999999999999888642 23344677777766
Q ss_pred ccCCCchhhhhHhH-HHHHHHHHH
Q 000973 876 VESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 876 ~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+.|+++++|+++| +|.+.+++.
T Consensus 333 -t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 333 -TEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHc
Confidence 8899999999999 888888766
No 65
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.8e-23 Score=248.25 Aligned_cols=217 Identities=19% Similarity=0.255 Sum_probs=174.3
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000973 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
..+.+.++.|..+..+++.+.+. .++.+..|.++|. +.|.|+||+||||||||+||+|+|.+. +.|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd----fLk~p~ky~~lGa---------kiPkGvlLvGpPGTGKTLLAkAvAgEA-~VP 210 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD----FLKNPKKYQALGA---------KIPKGVLLVGPPGTGKTLLAKAVAGEA-GVP 210 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH----HHhCchhhHhccc---------ccccceeEecCCCCCcHHHHHHHhccc-CCC
Confidence 34566777665444444433322 2444666777663 235799999999999999999999998 999
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCCe
Q 000973 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~v 801 (1205)
|++++.++++- +++|-...-+|.+|..|++.+|||+||||||++... ..++.+++|+..||+.....+|
T Consensus 211 Ff~iSGS~FVe-mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 211 FFSISGSDFVE-MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred ceeccchhhhh-hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 99999999885 457888889999999999999999999999999732 2345677777777777777799
Q ss_pred EEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000973 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+||++||+| +.||+ +.+|++| ..+.|++|+...|.+|++.|+.+ ++...++++..++.. ++|
T Consensus 290 iviaaTNRp-dVlD~--ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~----------~~l~~~Vdl~~iAr~---tpG 353 (596)
T COG0465 290 IVIAATNRP-DVLDP--ALLRPGRFDRQILVELPDIKGREQILKVHAKN----------KPLAEDVDLKKIARG---TPG 353 (596)
T ss_pred EEEecCCCc-ccchH--hhcCCCCcceeeecCCcchhhHHHHHHHHhhc----------CCCCCcCCHHHHhhh---CCC
Confidence 999999999 99999 7777776 67779999999999999999975 355677888887766 889
Q ss_pred CchhhhhHhH-HHHHHHHHHH
Q 000973 880 PKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~alrel 899 (1205)
+++++|.+++ |++..+.|.-
T Consensus 354 fsGAdL~nl~NEAal~aar~n 374 (596)
T COG0465 354 FSGADLANLLNEAALLAARRN 374 (596)
T ss_pred cccchHhhhHHHHHHHHHHhc
Confidence 9999999999 9998888774
No 66
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.88 E-value=3.8e-23 Score=244.02 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=172.7
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+...|.+++|++..++++.+.+.. ++..+..+..+++ . ++.++||+||||||||++|++||+++ +.
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~l---pl~~p~~~~~~gi-----~----~p~gVLL~GPPGTGKT~LAraIA~el-~~ 243 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVEL---PLTHPELYDDIGI-----K----PPKGVILYGPPGTGKTLLAKAVANET-SA 243 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHh---hhhCHHHHHhcCC-----C----CCcEEEEECCCCCCHHHHHHHHHHhh-CC
Confidence 4567899999999999888877532 2344555555543 2 24689999999999999999999998 78
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHH---HHHHHHHHHHHhcCCCCC
Q 000973 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHE---QLRAVLLTLLEELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~---~~~~~ll~lL~~~~~~~~ 800 (1205)
+|+.+..+.++..| .|+.+..++.+|..|....||||||||||.++.. ... +.+..|+..|+++....+
T Consensus 244 ~fi~V~~seL~~k~-~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 244 TFLRVVGSELIQKY-LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred CEEEEecchhhhhh-cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 89999988988876 7888999999999999999999999999999732 112 233344555555555678
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000973 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
+.||+|||++ +.||+ +.++++| ..|+|++|+.++|..||+.++.++ ....++++..++.. +.
T Consensus 323 V~VI~ATNr~-d~LDp--aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~----------~l~~dvdl~~la~~---t~ 386 (438)
T PTZ00361 323 VKVIMATNRI-ESLDP--ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM----------TLAEDVDLEEFIMA---KD 386 (438)
T ss_pred eEEEEecCCh-HHhhH--HhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC----------CCCcCcCHHHHHHh---cC
Confidence 9999999998 89998 5555444 788999999999999999988652 23445677777766 88
Q ss_pred CCchhhhhHhH-HHHHHHHHHH
Q 000973 879 GPKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alrel 899 (1205)
|+++++|+++| +|.+.++++-
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 8888888773
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-23 Score=240.75 Aligned_cols=223 Identities=23% Similarity=0.295 Sum_probs=176.6
Q ss_pred ecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcc
Q 000973 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (1205)
Q Consensus 649 ~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~ 728 (1205)
...+.+.|.+++++....+.+.+.+ |+|.+ .+..|..+ ..| ..++||+||||+|||+|++|||.++
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~v--i~p~l-r~d~F~gl-------r~p---~rglLLfGPpgtGKtmL~~aiAsE~- 210 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAV--ILPLL-RPDLFLGL-------REP---VRGLLLFGPPGTGKTMLAKAIATES- 210 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhh--hhccc-chHhhhcc-------ccc---cchhheecCCCCchHHHHHHHHhhh-
Confidence 3456788999999876666555542 34433 34444332 223 3589999999999999999999998
Q ss_pred cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhc--CCCC
Q 000973 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEEL--PSHL 799 (1205)
Q Consensus 729 ~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~--~~~~ 799 (1205)
+..|+.++.+.|.++| .|++|+.++.+|..|+..+|+|+||||||+++.. ...++...|+-.++.. ....
T Consensus 211 ~atff~iSassLtsK~-~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~d 289 (428)
T KOG0740|consen 211 GATFFNISASSLTSKY-VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDD 289 (428)
T ss_pred cceEeeccHHHhhhhc-cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCC
Confidence 8999999999999998 8999999999999999999999999999999844 3446666666555554 3366
Q ss_pred CeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000973 800 PILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 800 ~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+|+||||||+| +++|+ +.++++..+++|++|+.+.|..+|+.+|..+ .......++..|+.. ++|
T Consensus 290 rvlvigaTN~P-~e~De--a~~Rrf~kr~yiplPd~etr~~~~~~ll~~~---------~~~l~~~d~~~l~~~---Teg 354 (428)
T KOG0740|consen 290 RVLVIGATNRP-WELDE--AARRRFVKRLYIPLPDYETRSLLWKQLLKEQ---------PNGLSDLDISLLAKV---TEG 354 (428)
T ss_pred eEEEEecCCCc-hHHHH--HHHHHhhceeeecCCCHHHHHHHHHHHHHhC---------CCCccHHHHHHHHHH---hcC
Confidence 99999999998 99999 6666655777799999999999999999763 122334566777777 999
Q ss_pred CchhhhhHhH-HHHHHHHHHHHH
Q 000973 880 PKASELKAKV-EAEQHALRRLRM 901 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~alrelr~ 901 (1205)
|++.+|.++| ++.+-.+|.+..
T Consensus 355 ysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 355 YSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred cccccHHHHHHHhhcCchhhccc
Confidence 9999999999 888777777555
No 68
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.87 E-value=5.5e-23 Score=230.57 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=122.7
Q ss_pred cccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccc-----cCCceeeeccchh
Q 000973 701 VYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR-----TTPSILYIPQFNL 775 (1205)
Q Consensus 701 ~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~-----~~p~ILfiDEid~ 775 (1205)
++|.++||+||||||||++|++||+++ +++++.++.++|+++| +|++|+.++++|..|+. .+||||||||||+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~sk~-vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELESEN-AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhcCc-CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 345689999999999999999999999 8999999999999998 89999999999999975 4699999999999
Q ss_pred hHHh-------HHHHHH-HHHHHHHHhc------------CCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCc
Q 000973 776 WWEN-------AHEQLR-AVLLTLLEEL------------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (1205)
Q Consensus 776 l~~~-------~~~~~~-~~ll~lL~~~------------~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~ 835 (1205)
+++. +..+++ .+|+++||++ +...+|+||+|||+| +.||+ +.+|++|.=-+|.+|+.
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp-d~LDp--ALlRpGRfDk~i~lPd~ 300 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF-STLYA--PLIRDGRMEKFYWAPTR 300 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc-ccCCH--hHcCCCCCCceeCCCCH
Confidence 9854 334454 7888888863 235689999999998 99999 88887773334679999
Q ss_pred cchhhhHHHHHHH
Q 000973 836 EDRSLFLGRLIEA 848 (1205)
Q Consensus 836 ~eR~~i~~~~l~~ 848 (1205)
++|..||+.|++.
T Consensus 301 e~R~eIL~~~~r~ 313 (413)
T PLN00020 301 EDRIGVVHGIFRD 313 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999974
No 69
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=1.9e-23 Score=203.25 Aligned_cols=110 Identities=28% Similarity=0.382 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000973 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.|+..|..||..++.++.+++|..||++..+|+|++||++||||+||++||.+|.|.++.+|..||+|||.||+.||+++
T Consensus 5 ~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~ 84 (119)
T cd05496 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNK 84 (119)
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhHHHHH
Q 000973 978 YNGTRIVSRGYELRDAVHGMLSQMDPALVSYC 1009 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~ 1009 (1205)
++.|+.+|..|++.|++.+.++...+....
T Consensus 85 --~s~i~~~a~~L~~~F~~~~~~l~~~~~~~~ 114 (119)
T cd05496 85 --RSRIYSMTLRLSALFEEHIKKIISDWKSAL 114 (119)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999988876443
No 70
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.87 E-value=2.1e-23 Score=201.43 Aligned_cols=109 Identities=50% Similarity=0.780 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000973 896 LRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 896 lrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
+|+++.+|+.|+++++.++.+++|..||++..+|+||++|++||||+||++||+++.|.|+++|.+||+|||+||+.||+
T Consensus 1 ~~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 1 LRELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred ChHHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-cceeeechhhhhhhHhhhhhccChh
Q 000973 976 NDYN-GTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 976 ~~~~-~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
++++ |+.|+++|..|++.|.+++.++.+.
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9653 6789999999999999999876653
No 71
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.87 E-value=5.8e-23 Score=262.83 Aligned_cols=184 Identities=18% Similarity=0.220 Sum_probs=147.2
Q ss_pred cccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCC-----------------------------------
Q 000973 701 VYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPS----------------------------------- 745 (1205)
Q Consensus 701 ~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~----------------------------------- 745 (1205)
.+++|+||+||||||||+||+|||.++ ++||+.+++++++.++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 346799999999999999999999998 89999999999886541
Q ss_pred -----CCChhhH--HHHhhccccccCCceeeeccchhhHHhHHHHH-HHHHHHHHHhcC---CCCCeEEeccCCcCCccc
Q 000973 746 -----AKTPEEA--LVHIFGEARRTTPSILYIPQFNLWWENAHEQL-RAVLLTLLEELP---SHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 746 -----~g~se~~--~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~-~~~ll~lL~~~~---~~~~v~vIattn~~~~~L 814 (1205)
++..+.. ++.+|+.|++.+||||||||||++.......+ +++|+..|++.. ...+|+||||||+| +.|
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRP-D~L 1785 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIP-QKV 1785 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCc-ccC
Confidence 1222333 78899999999999999999999986644433 778888888653 35689999999998 999
Q ss_pred cCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCC-CCCCCCCCCCCCCccCCCchhhhhHhH-H
Q 000973 815 EGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQ-ESVSLPELPKVPTVESGPKASELKAKV-E 890 (1205)
Q Consensus 815 d~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~-~~~~l~~Lp~~~~~~~g~S~aELk~~~-e 890 (1205)
|| |.+++|| ..|+|+.|+..+|.++|..++... ..... ..+++..++.. +.|++||||.++| |
T Consensus 1786 DP--ALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk--------g~~L~~~~vdl~~LA~~---T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1786 DP--ALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR--------GFHLEKKMFHTNGFGSI---TMGSNARDLVALTNE 1852 (2281)
T ss_pred CH--hHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc--------CCCCCcccccHHHHHHh---CCCCCHHHHHHHHHH
Confidence 99 7787776 888899999999999998775321 00111 22456666666 8999999999999 9
Q ss_pred HHHHHHHHH
Q 000973 891 AEQHALRRL 899 (1205)
Q Consensus 891 a~~~alrel 899 (1205)
|...++++-
T Consensus 1853 AaliAirq~ 1861 (2281)
T CHL00206 1853 ALSISITQK 1861 (2281)
T ss_pred HHHHHHHcC
Confidence 999998874
No 72
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=4.5e-23 Score=197.76 Aligned_cols=102 Identities=30% Similarity=0.460 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccccccc
Q 000973 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYN 974 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN 974 (1205)
.+++.+++.||..+..++.+++|..||++. ++|+||+||++||||+||++||++|.|.|+.+|.+||+|||.||..||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468889999999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeechhhhhhhHhhhhhcc
Q 000973 975 GNDYNGTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 975 ~~~~~~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
++ ++.|+.+|..|++.|++.+++|
T Consensus 84 ~~---~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 84 KP---GDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHcC
Confidence 99 7789999999999999998765
No 73
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-22 Score=218.80 Aligned_cols=220 Identities=17% Similarity=0.228 Sum_probs=178.6
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000973 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
..+++..++++..++.++++-| .-++..+..+.++++ ++|.++||+||||||||++|++|+..+ +.+
T Consensus 127 ~~~s~~~~ggl~~qirelre~i---elpl~np~lf~rvgI---------k~Pkg~ll~GppGtGKTlla~~Vaa~m-g~n 193 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVI---ELPLTNPELFLRVGI---------KPPKGLLLYGPPGTGKTLLARAVAATM-GVN 193 (388)
T ss_pred cccCHHHhCChHHHHHHHHhhe---EeeccCchhccccCC---------CCCceeEEeCCCCCchhHHHHHHHHhc-CCc
Confidence 3456778888877777776653 224555666666653 345799999999999999999999999 899
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcCC---CCCe
Q 000973 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS---HLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~~---~~~v 801 (1205)
|+.+..+.+.++| +|++...+++.|..|+...|||||+||||+.... ....+..+|..++++|.+ -..|
T Consensus 194 fl~v~ss~lv~ky-iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rV 272 (388)
T KOG0651|consen 194 FLKVVSSALVDKY-IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRV 272 (388)
T ss_pred eEEeeHhhhhhhh-cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccc
Confidence 9999999999998 8999999999999999999999999999999843 334567778888777755 5688
Q ss_pred EEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000973 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
=+|+|||+| +.|++ +.++++| +-+++|+|+...|..|++.|-..+ ......+.+.+-+. .++
T Consensus 273 k~ImatNrp-dtLdp--aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i----------~~~Geid~eaivK~---~d~ 336 (388)
T KOG0651|consen 273 KTIMATNRP-DTLDP--ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI----------DFHGEIDDEAILKL---VDG 336 (388)
T ss_pred cEEEecCCc-cccch--hhcCCccccceeccCCcchhhceeeEeeccccc----------cccccccHHHHHHH---Hhc
Confidence 899999998 99999 9999998 888999999999999999877543 22233556666666 789
Q ss_pred CchhhhhHhH-HHHHHHHHHHHH
Q 000973 880 PKASELKAKV-EAEQHALRRLRM 901 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~alrelr~ 901 (1205)
+.++++.+.| |+-+.++++.+.
T Consensus 337 f~gad~rn~~tEag~Fa~~~~~~ 359 (388)
T KOG0651|consen 337 FNGADLRNVCTEAGMFAIPEERD 359 (388)
T ss_pred cChHHHhhhcccccccccchhhH
Confidence 9999999999 888888777543
No 74
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.85 E-value=3.4e-22 Score=243.77 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=167.7
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+.+.|.++.++.....++.+.+.. +..+..+.+++ .. .+.++||+||||||||++|++||+++ +.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~----l~~~~~~~~~g-----~~----~~~giLL~GppGtGKT~la~alA~~~-~~ 114 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF----LKNPSKFTKLG-----AK----IPKGVLLVGPPGTGKTLLAKAVAGEA-GV 114 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH----HHCHHHHHhcC-----CC----CCCcEEEECCCCCCHHHHHHHHHHHc-CC
Confidence 4567899998887776666554322 22334444433 22 24689999999999999999999998 89
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCC
Q 000973 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~ 800 (1205)
+|+.++.+.+...+ .|.++..++.+|..|+...||||||||||.++.. ....+++.|+..|+++....+
T Consensus 115 ~~~~i~~~~~~~~~-~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 115 PFFSISGSDFVEMF-VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred CeeeccHHHHHHHH-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 99999988887765 7888999999999999999999999999999743 123566777777777777788
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000973 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
|+||+|||++ +.||+ +.++++| .+++|++|+.++|.+||+.++... +.....++..++.. +.
T Consensus 194 v~vI~aTn~~-~~ld~--al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----------~~~~~~~l~~la~~---t~ 257 (495)
T TIGR01241 194 VIVIAATNRP-DVLDP--ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----------KLAPDVDLKAVARR---TP 257 (495)
T ss_pred eEEEEecCCh-hhcCH--HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----------CCCcchhHHHHHHh---CC
Confidence 9999999998 89999 5555444 788999999999999999998642 22344566666666 88
Q ss_pred CCchhhhhHhH-HHHHHHHH
Q 000973 879 GPKASELKAKV-EAEQHALR 897 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alr 897 (1205)
|+++++|.+++ ++...+.+
T Consensus 258 G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 258 GFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 66555544
No 75
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.85 E-value=1.1e-21 Score=234.28 Aligned_cols=207 Identities=16% Similarity=0.250 Sum_probs=159.1
Q ss_pred ecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcc
Q 000973 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (1205)
Q Consensus 649 ~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~ 728 (1205)
...+.+.|.+++|+...++.+...+.. ++.++..|.+.++ . ++.++||+||||||||++|+++|+++.
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~l---p~~~~~l~~~~gl-----~----~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVEL---PFLHPELYREYDL-----K----PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHH---HhhCHHHHHhccC-----C----CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 345778999999999888888777532 3344555555542 2 246899999999999999999999872
Q ss_pred c---------CccccCCCccccCCCCCCChhhHHHHhhcccccc----CCceeeeccchhhHHh--------HHHHHHHH
Q 000973 729 K---------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRT----TPSILYIPQFNLWWEN--------AHEQLRAV 787 (1205)
Q Consensus 729 ~---------~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~----~p~ILfiDEid~l~~~--------~~~~~~~~ 787 (1205)
. ..|+.+..+.++++| .|+++..++.+|..|+.. .||||||||||.++.. ...+++++
T Consensus 242 ~~i~~~~~~~~~fl~v~~~eLl~ky-vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~ 320 (512)
T TIGR03689 242 QRIGAETGDKSYFLNIKGPELLNKY-VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ 320 (512)
T ss_pred cccccccCCceeEEeccchhhcccc-cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH
Confidence 1 235667778888887 799999999999988764 6999999999999843 23466788
Q ss_pred HHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCC
Q 000973 788 LLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESV 865 (1205)
Q Consensus 788 ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~ 865 (1205)
|+++|+++....+|+||+|||++ +.||+ +.++++| ..|+|++|+.++|..||+.++... ....
T Consensus 321 LL~~LDgl~~~~~ViVI~ATN~~-d~LDp--ALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-----------l~l~- 385 (512)
T TIGR03689 321 LLSELDGVESLDNVIVIGASNRE-DMIDP--AILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-----------LPLD- 385 (512)
T ss_pred HHHHhcccccCCceEEEeccCCh-hhCCH--hhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-----------CCch-
Confidence 88999998877899999999998 89999 6666555 678999999999999999998531 0001
Q ss_pred CCCCCCCCCCccCCCchhhhhHhH
Q 000973 866 SLPELPKVPTVESGPKASELKAKV 889 (1205)
Q Consensus 866 ~l~~Lp~~~~~~~g~S~aELk~~~ 889 (1205)
..+ ....|++++++.+++
T Consensus 386 --~~l----~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 386 --ADL----AEFDGDREATAAALI 403 (512)
T ss_pred --HHH----HHhcCCCHHHHHHHH
Confidence 111 124578888888876
No 76
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=3.4e-22 Score=191.17 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000973 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
+.|+.+|..++..+..++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+.+|..||+|||+||..||++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhhhcc
Q 000973 977 DYNGTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
++.|+.+|..|++.|...+.++
T Consensus 82 ---~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 82 ---DHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred ---CCHHHHHHHHHHHHHHHHhhcc
Confidence 6779999999999998887643
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.84 E-value=2.1e-21 Score=228.20 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=168.3
Q ss_pred cccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhccc
Q 000973 650 HSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK 729 (1205)
Q Consensus 650 ~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~ 729 (1205)
..+.+.|.+++|++..++++.+.+.. ++..+..+..+| .. ++.++||+||||||||++|+++++.+ +
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~---~~~~~~~~~~~g-----~~----~p~gvLL~GppGtGKT~lakaia~~l-~ 181 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVEL---PLKHPELFEEVG-----IE----PPKGVLLYGPPGTGKTLLAKAVAHET-N 181 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHH---HhcCHHHHHhcC-----CC----CCceEEEECCCCCCHHHHHHHHHHhC-C
Confidence 45678899999999999988887532 233445555443 22 24689999999999999999999998 7
Q ss_pred CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHH---HHhcCCCC
Q 000973 730 FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTL---LEELPSHL 799 (1205)
Q Consensus 730 ~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~l---L~~~~~~~ 799 (1205)
.+|+.+..+.+...| .|+....++.+|..|+...||||||||+|.+... ....+..+|..+ ++++....
T Consensus 182 ~~~~~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 182 ATFIRVVGSELVRKY-IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred CCEEecchHHHHHHh-hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 889988888888776 7888889999999999999999999999998632 112233334444 45555567
Q ss_pred CeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcc
Q 000973 800 PILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVE 877 (1205)
Q Consensus 800 ~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~ 877 (1205)
+++||+|||++ +.||+ +.++++| .+++|++|+.++|..||+.++... ......++..|+.. +
T Consensus 261 ~v~vI~ttn~~-~~ld~--al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~----------~l~~~~~~~~la~~---t 324 (364)
T TIGR01242 261 NVKVIAATNRP-DILDP--ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM----------KLAEDVDLEAIAKM---T 324 (364)
T ss_pred CEEEEEecCCh-hhCCh--hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC----------CCCccCCHHHHHHH---c
Confidence 89999999998 88988 4444332 788999999999999999887642 22334567777766 7
Q ss_pred CCCchhhhhHhH-HHHHHHHHH
Q 000973 878 SGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 878 ~g~S~aELk~~~-ea~~~alre 898 (1205)
.|+++++|.++| +|.+.+++.
T Consensus 325 ~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 325 EGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999 788888765
No 78
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=3.4e-22 Score=188.13 Aligned_cols=94 Identities=29% Similarity=0.523 Sum_probs=89.5
Q ss_pred HHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcc
Q 000973 902 CLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGT 981 (1205)
Q Consensus 902 ~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s 981 (1205)
.|..||+.++.++.+++|..||++..+|+||+||++||||+||++||++|.|.|+++|.+||+|||+||+.||++ +|
T Consensus 4 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~---~s 80 (97)
T cd05505 4 KCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYEN---GS 80 (97)
T ss_pred HHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC---CC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred eeeechhhhhhhHhhhh
Q 000973 982 RIVSRGYELRDAVHGML 998 (1205)
Q Consensus 982 ~i~~~A~~l~~~~~~~~ 998 (1205)
.|+.+|..|++.|...+
T Consensus 81 ~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 81 YVLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 89999999999997653
No 79
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=4.4e-22 Score=187.72 Aligned_cols=97 Identities=29% Similarity=0.410 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000973 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
.+|+..|+.++.++. ++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+++|.+||+|||+||+.||++
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~ 80 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGG 80 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 367788889999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhh
Q 000973 977 DYNGTRIVSRGYELRDAVHGM 997 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~ 997 (1205)
+|.++.+|..|.+.|...
T Consensus 81 ---~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 81 ---DHKLTQAAKAIVKICEQE 98 (99)
T ss_pred ---CCHHHHHHHHHHHHHHhh
Confidence 678999999999988654
No 80
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.6e-22 Score=190.71 Aligned_cols=100 Identities=27% Similarity=0.459 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhhhhcc-ccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccccccc
Q 000973 898 RLRMCLRDVCNRMLYD-KRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYN 974 (1205)
Q Consensus 898 elr~~lr~il~~l~~~-k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN 974 (1205)
+|+.+|..++..|..+ +.+++|..||++. ++|+||+||++||||+||++||++|.|.++.+|.+||+|||+||+.||
T Consensus 3 ~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYN 82 (108)
T ss_pred HHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5677888899999999 9999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeechhhhhhhHhhhhhc
Q 000973 975 GNDYNGTRIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 975 ~~~~~~s~i~~~A~~l~~~~~~~~~~ 1000 (1205)
++ +|.|+.+|..|++.|++.++.
T Consensus 83 ~~---~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 83 RK---TSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHH
Confidence 98 778999999999999998764
No 81
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=6.9e-22 Score=190.69 Aligned_cols=103 Identities=24% Similarity=0.429 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhhhhcc-ccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000973 898 RLRMCLRDVCNRMLYD-KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 898 elr~~lr~il~~l~~~-k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
+|..+|..|+..+..+ +.+++|..||++..+|+||++|++||||+||++||++|.|.|+++|.+||+|||+||+.||++
T Consensus 7 ~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~ 86 (112)
T cd05510 7 EFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSD 86 (112)
T ss_pred HHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4667888999999998 889999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcceeeechhhhhhhHhhhhhccC
Q 000973 977 DYNGTRIVSRGYELRDAVHGMLSQMD 1002 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~ 1002 (1205)
+ .+.++++|..|++.|+..+..||
T Consensus 87 ~--s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 87 P--SHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHCC
Confidence 4 34688999999999999999886
No 82
>CHL00176 ftsH cell division protein; Validated
Probab=99.83 E-value=5.1e-21 Score=235.93 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=163.1
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000973 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
..+.|.++.|+.+..+++.+.+.. +..+..+..++ .. .+.++||+||||||||++|+++|+++ +.|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~----lk~~~~~~~~g-----~~----~p~gVLL~GPpGTGKT~LAralA~e~-~~p 243 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF----LKKPERFTAVG-----AK----IPKGVLLVGPPGTGKTLLAKAIAGEA-EVP 243 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH----HhCHHHHhhcc-----CC----CCceEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence 346778887776655555443321 22233444443 22 24689999999999999999999998 899
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCCe
Q 000973 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~v 801 (1205)
|+.++++.+...+ .|.....++.+|..|+...||||||||||.+... ....+++.|+..|++.....+|
T Consensus 244 ~i~is~s~f~~~~-~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 244 FFSISGSEFVEMF-VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred eeeccHHHHHHHh-hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 9999988887655 6777788999999999999999999999999732 2235566666667777677899
Q ss_pred EEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000973 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+||+|||++ +.||+ +.++++| .+++|++|+.++|..||+.++... ....+.++..|+.. +.|
T Consensus 323 iVIaaTN~~-~~LD~--ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----------~~~~d~~l~~lA~~---t~G 386 (638)
T CHL00176 323 IVIAATNRV-DILDA--ALLRPGRFDRQITVSLPDREGRLDILKVHARNK----------KLSPDVSLELIARR---TPG 386 (638)
T ss_pred eEEEecCch-Hhhhh--hhhccccCceEEEECCCCHHHHHHHHHHHHhhc----------ccchhHHHHHHHhc---CCC
Confidence 999999998 88998 5555444 788999999999999999998751 23344566666665 889
Q ss_pred CchhhhhHhH-HHHHHHHHH
Q 000973 880 PKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~alre 898 (1205)
+++++|++++ ++...+.|.
T Consensus 387 ~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 387 FSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999 666665544
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=2.6e-20 Score=210.68 Aligned_cols=220 Identities=20% Similarity=0.279 Sum_probs=172.0
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCC---cceeeecCCCChhHHHHHHHHhhhhhcCC--eEEEEEecchh
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPP---RGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGAD 453 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~---~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~~~~ 453 (1205)
.+|+|++.+|++|.+++.+ +..+.++...|+.++ .++||+||||||||++|+++|+.+...+. ..+|+.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 556677777777553 46999999999999999999999865442 23588899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc--
Q 000973 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD-- 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~-- 531 (1205)
+++.|+|++...+..+|..+.. +||||||+|.|+..+. .......++..|+..|+. ..++++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 9999999888888888887643 5999999999975332 123456788899999984 346688888876422
Q ss_pred ---cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhh------hccc-chhHHHHhHHHHH
Q 000973 532 ---AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASC------VGYC-GADLKALCTEAAI 601 (1205)
Q Consensus 532 ---~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t------~G~s-gadI~~L~~eA~~ 601 (1205)
.++|+|++ ||+..|.|++++.+++.+|+..++.+....++.+....+.... ..|. ++++++++..|..
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 24689998 9999999999999999999999999887777766554444431 2333 7999999999888
Q ss_pred HHHHHhC
Q 000973 602 RAFREKY 608 (1205)
Q Consensus 602 ~a~rr~~ 608 (1205)
....|..
T Consensus 253 ~~~~r~~ 259 (287)
T CHL00181 253 RQANRIF 259 (287)
T ss_pred HHHHHHH
Confidence 7777654
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=1.7e-20 Score=210.60 Aligned_cols=221 Identities=21% Similarity=0.260 Sum_probs=167.2
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccC---CCcceeeecCCCChhHHHHHHHHhhhhhcC--CeEEEEEecc
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT---PPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKG 451 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~---~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~i~~ 451 (1205)
.+++|+|++.+|+.|++++.++... ......|+. ...++||+||||||||++|+++|+.+...+ ....++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3578999999999999998875433 233334544 345799999999999999999999875433 2346788899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
+++++.|+|+....++.+|..+. ++||||||+|.|.... ........+..|+..|+.. .+.++||++++..+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 99999999999999999998875 3599999999996421 1123456778888888853 45666666654322
Q ss_pred -----cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhh---------cccchhHHHHhH
Q 000973 532 -----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV---------GYCGADLKALCT 597 (1205)
Q Consensus 532 -----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~---------G~sgadI~~L~~ 597 (1205)
.++++|++ ||...|.|+.++.+++.+|++.++......++++.+..|+.... .-+++.+.+++.
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 36889998 99889999999999999999999988777788887777755432 235677888888
Q ss_pred HHHHHHHHHhC
Q 000973 598 EAAIRAFREKY 608 (1205)
Q Consensus 598 eA~~~a~rr~~ 608 (1205)
.|......+..
T Consensus 233 ~a~~~~~~r~~ 243 (261)
T TIGR02881 233 KAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHh
Confidence 87776666543
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=6.5e-20 Score=207.61 Aligned_cols=219 Identities=19% Similarity=0.255 Sum_probs=175.2
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCC---CcceeeecCCCChhHHHHHHHHhhhhhcCC--eEEEEEecchhh
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGADV 454 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~~~~l 454 (1205)
+|+|++++|+.|.+++.+ +..+..+...|+.+ ..++||+||||||||++|+++|+.+...+. ..+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999888 66778888888764 458999999999999999999999876543 236888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc--cc
Q 000973 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV--DA 532 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~--~~ 532 (1205)
++.++|++...++.+|+.+.. +||||||+|.|.+.+. .......++..|+..|+. ...+++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 999999888888888887754 5999999999864322 122345678889999984 34678888887642 32
Q ss_pred ---ccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhh-------cccchhHHHHhHHHHHH
Q 000973 533 ---IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV-------GYCGADLKALCTEAAIR 602 (1205)
Q Consensus 533 ---ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~-------G~sgadI~~L~~eA~~~ 602 (1205)
++++|.+ ||...|.||.++.+++..|++.++.+....++.+.+..+..+.. --+++++++++..++..
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 5899999 99999999999999999999999999877777777776665422 13578999999998877
Q ss_pred HHHHhC
Q 000973 603 AFREKY 608 (1205)
Q Consensus 603 a~rr~~ 608 (1205)
...|..
T Consensus 253 ~~~r~~ 258 (284)
T TIGR02880 253 QANRLF 258 (284)
T ss_pred HHHHHh
Confidence 766654
No 86
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.4e-21 Score=183.15 Aligned_cols=94 Identities=27% Similarity=0.483 Sum_probs=90.3
Q ss_pred HHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcc
Q 000973 902 CLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGT 981 (1205)
Q Consensus 902 ~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s 981 (1205)
+|..||..+..++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+++|..||+|||+||+.||++ ++
T Consensus 4 ~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~---~s 80 (97)
T cd05503 4 LCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNED---DS 80 (97)
T ss_pred HHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC---CC
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred eeeechhhhhhhHhhhh
Q 000973 982 RIVSRGYELRDAVHGML 998 (1205)
Q Consensus 982 ~i~~~A~~l~~~~~~~~ 998 (1205)
.++.+|..|++.|+..|
T Consensus 81 ~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 81 EVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 79999999999999876
No 87
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.7e-21 Score=187.97 Aligned_cols=100 Identities=26% Similarity=0.450 Sum_probs=94.5
Q ss_pred HHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCC
Q 000973 900 RMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYN 979 (1205)
Q Consensus 900 r~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~ 979 (1205)
...|..||..+..++.+++|..||++..+|+||++|++||||+||++||++|.|.|+.+|..||+|||+||++||++
T Consensus 14 ~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~--- 90 (115)
T cd05504 14 LSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPE--- 90 (115)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC---
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeechhhhhhhHhhhhhccC
Q 000973 980 GTRIVSRGYELRDAVHGMLSQMD 1002 (1205)
Q Consensus 980 ~s~i~~~A~~l~~~~~~~~~~~~ 1002 (1205)
+|.++.+|..|++.|.+.+++++
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 67899999999999999998765
No 88
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=2.9e-21 Score=181.85 Aligned_cols=96 Identities=28% Similarity=0.457 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCC
Q 000973 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDY 978 (1205)
Q Consensus 899 lr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~ 978 (1205)
|+.+|..|+..++.++.+++|..||++..+|+|+++|++||||+||++||+++.|.|+.+|.+||+|||.||+.||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~-- 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP-- 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC--
Confidence 567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeechhhhhhhHhhh
Q 000973 979 NGTRIVSRGYELRDAVHGM 997 (1205)
Q Consensus 979 ~~s~i~~~A~~l~~~~~~~ 997 (1205)
++.++++|..|.....+.
T Consensus 80 -~s~~~~~A~~L~~~~~~~ 97 (98)
T cd05513 80 -DTIYYKAAKKLLHSGMKI 97 (98)
T ss_pred -CCHHHHHHHHHHHhhhhh
Confidence 778999999998766543
No 89
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=3.3e-21 Score=186.66 Aligned_cols=107 Identities=27% Similarity=0.499 Sum_probs=100.4
Q ss_pred HHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCC
Q 000973 900 RMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYN 979 (1205)
Q Consensus 900 r~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~ 979 (1205)
.+.++.|++.++.++.+++|..||++..+|+||++|++||||+||++||+++.|.|+++|..||+|||+||..||++
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~--- 78 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGP--- 78 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeechhhhhhhHhhhhhccChhHHHHH
Q 000973 980 GTRIVSRGYELRDAVHGMLSQMDPALVSYC 1009 (1205)
Q Consensus 980 ~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~ 1009 (1205)
++.++.+|..|++.|...+.+++..+....
T Consensus 79 ~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~ 108 (112)
T cd05511 79 DSVYTKKAKEMLELAEELLAEREEKLTQLE 108 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 677999999999999999999988765543
No 90
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.81 E-value=4.3e-21 Score=237.38 Aligned_cols=110 Identities=24% Similarity=0.414 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000973 900 RMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 900 r~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
-..|..||.+|+.|+.+|+|..|||+. ++|||++|||+||||+||++||.+|.|.++.+|..||+|||.||++||++
T Consensus 224 lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~- 302 (640)
T KOG1474|consen 224 LKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPE- 302 (640)
T ss_pred HHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 344567999999999999999999997 79999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhHHHHHHHh
Q 000973 978 YNGTRIVSRGYELRDAVHGMLSQMDPALVSYCDKI 1012 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 1012 (1205)
|+.||.||..|++.|+..|..++..+.......
T Consensus 303 --g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~ 335 (640)
T KOG1474|consen 303 --GSDVYAMAKKLQEVFEERWASMPLEIEESESAV 335 (640)
T ss_pred --CCHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 778999999999999999999988765544433
No 91
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=4.6e-21 Score=180.95 Aligned_cols=95 Identities=29% Similarity=0.473 Sum_probs=89.5
Q ss_pred HHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCC
Q 000973 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDY 978 (1205)
Q Consensus 899 lr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~ 978 (1205)
|+..|+.++.+|..++.+++|..||++..+|+|+++|++||||+||++||.++.|.|+++|..||+|||+||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~-- 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK-- 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC--
Confidence 466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeechhhhhhhHhh
Q 000973 979 NGTRIVSRGYELRDAVHG 996 (1205)
Q Consensus 979 ~~s~i~~~A~~l~~~~~~ 996 (1205)
++.++++|..|++....
T Consensus 80 -~s~~~~~A~~l~~~~~~ 96 (98)
T cd05512 80 -DTIFYRAAVRLRDQGGA 96 (98)
T ss_pred -CCHHHHHHHHHHHhhcc
Confidence 77899999999986543
No 92
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=9.3e-21 Score=178.14 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000973 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
+++. |..||..|..++.+++|..+ +..+||||+|||+||||+||++||.+|+|.|+.+|.+||+|||+||++||++
T Consensus 3 ~l~~-ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~- 78 (102)
T cd05501 3 ELLK-CEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD- 78 (102)
T ss_pred HHHH-HHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC-
Confidence 4455 68899999999999999663 4589999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeechhhhhhhHhhhhhcc
Q 000973 978 YNGTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
+ .++.+|..|++.|++.|+++
T Consensus 79 --~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 --D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred --C-HHHHHHHHHHHHHHHHHHHH
Confidence 5 69999999999999988753
No 93
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=7.7e-21 Score=181.56 Aligned_cols=99 Identities=31% Similarity=0.529 Sum_probs=94.0
Q ss_pred HHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCC
Q 000973 900 RMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYN 979 (1205)
Q Consensus 900 r~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~ 979 (1205)
..+|..|++.+..++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+.+|..||+|||+||+.||++
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~--- 79 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP--- 79 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeechhhhhhhHhhhhhcc
Q 000973 980 GTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 980 ~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
++.++.+|..|++.|++.++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 7789999999999999988753
No 94
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=1.4e-20 Score=180.93 Aligned_cols=100 Identities=19% Similarity=0.355 Sum_probs=89.7
Q ss_pred HHHHHHHHhhhhhcccc------ccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccccc
Q 000973 899 LRMCLRDVCNRMLYDKR------FSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKA 972 (1205)
Q Consensus 899 lr~~lr~il~~l~~~k~------~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 972 (1205)
|...|+.|++.+..++. +++|..||+...+|+||+||++||||+||++||.+|.|.++.+|..||.|||+||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455666666666555 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeeechhhhhhhHhhhhhcc
Q 000973 973 YNGNDYNGTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 973 yN~~~~~~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
||++ +|.|+.+|..|++.|...++++
T Consensus 82 yN~~---~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 82 FNLE---GSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HCCC---CCHHHHHHHHHHHHHHHHHhcC
Confidence 9999 7889999999999999887753
No 95
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.79 E-value=7.8e-20 Score=228.19 Aligned_cols=178 Identities=19% Similarity=0.281 Sum_probs=148.4
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh---
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--- 779 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~--- 779 (1205)
++++||+||||||||++|++++.++ +.+|+.++.+.+...+ .|.....++.+|..|+...||||||||||.+...
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~-~~~f~~is~~~~~~~~-~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~ 262 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFVEMF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 262 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc-CCCEEEEehHHhHHhh-hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCC
Confidence 4689999999999999999999998 8999999988887665 6888889999999999999999999999999732
Q ss_pred -------HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHH
Q 000973 780 -------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAV 850 (1205)
Q Consensus 780 -------~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~ 850 (1205)
....+++.|+..|+++....+|+||+|||+| +.||+ +.++++| ..++|++|+.++|.+||+.|+.+.
T Consensus 263 ~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p-~~lD~--Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~- 338 (644)
T PRK10733 263 GLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP-DVLDP--ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV- 338 (644)
T ss_pred CCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCCh-hhcCH--HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-
Confidence 2345677777778887777899999999998 99999 5555443 788899999999999999999752
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 851 SVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 851 ~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+...++++..|+.. +.|+++++|.++| +|...+.|.
T Consensus 339 ---------~l~~~~d~~~la~~---t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 339 ---------PLAPDIDAAIIARG---TPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred ---------CCCCcCCHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHc
Confidence 23344555556555 8899999999999 888877765
No 96
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=2.5e-20 Score=180.19 Aligned_cols=100 Identities=26% Similarity=0.450 Sum_probs=93.8
Q ss_pred HHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccC---CceeeeccccccchhhhcccccccCC
Q 000973 900 RMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS---GHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 900 r~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~---~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
+..|..||..++.++.+++|..||++ .+|+|+++|++||||+||++||++ |.|.++++|..||+|||+||+.||++
T Consensus 6 ~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (109)
T cd05502 6 QRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEE 84 (109)
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45677899999999999999999999 899999999999999999999998 69999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhhhccCh
Q 000973 977 DYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
++.++.+|..|++.|++.+.++-|
T Consensus 85 ---~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 85 ---DSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHCc
Confidence 678999999999999999987654
No 97
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=3.1e-20 Score=176.80 Aligned_cols=96 Identities=27% Similarity=0.391 Sum_probs=90.6
Q ss_pred HHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000973 900 RMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 900 r~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
...|..||..++.++.+++|..||++. .+|+|+++|++||||+||++||++|.|.|+.+|..|++|||.||+.||++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~- 80 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP- 80 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC-
Confidence 356788999999999999999999876 79999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhh
Q 000973 978 YNGTRIVSRGYELRDAVHGML 998 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~ 998 (1205)
++.++.+|..|++.|++.|
T Consensus 81 --~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 --GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred --CCHHHHHHHHHHHHHHHhC
Confidence 6779999999999999876
No 98
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=5e-20 Score=176.27 Aligned_cols=98 Identities=28% Similarity=0.436 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000973 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.++..|..+|..|+.++.+++|..||++. .+|+|+++|++||||+||++||.+|.|.|+.+|..||+|||+||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34566778999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhh
Q 000973 976 NDYNGTRIVSRGYELRDAVHGML 998 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~ 998 (1205)
+ +|.++.+|..|++.|++.+
T Consensus 84 ~---~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 84 P---EHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred C---CCHHHHHHHHHHHHHHHhC
Confidence 9 7789999999999998753
No 99
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=6.3e-20 Score=175.46 Aligned_cols=94 Identities=30% Similarity=0.503 Sum_probs=86.9
Q ss_pred HHHHHhhhhhc---cccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000973 902 CLRDVCNRMLY---DKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 902 ~lr~il~~l~~---~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
.|..||+.|+. +..+++|..||++. .+|+||++|++||||+||++||+++.|.|+.+|..||+|||+||+.||++
T Consensus 4 ~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~ 83 (102)
T cd05499 4 FCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPE 83 (102)
T ss_pred HHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45667788877 45689999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhh
Q 000973 977 DYNGTRIVSRGYELRDAVHGML 998 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~ 998 (1205)
++.++.+|..|++.|++.|
T Consensus 84 ---~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 84 ---GTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred ---CCHHHHHHHHHHHHHHHhC
Confidence 7789999999999999875
No 100
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=6.4e-20 Score=175.57 Aligned_cols=95 Identities=24% Similarity=0.407 Sum_probs=89.1
Q ss_pred HHHHHHhhhhhcc---ccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000973 901 MCLRDVCNRMLYD---KRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 901 ~~lr~il~~l~~~---k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.+|..||+.|+.+ +.+++|..||++. .+|+||++|++||||+||++||++|.|.|+.+|..||+|||+||+.||+
T Consensus 3 ~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~ 82 (102)
T cd05498 3 KFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNP 82 (102)
T ss_pred hHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4567799999988 7899999999886 6999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhh
Q 000973 976 NDYNGTRIVSRGYELRDAVHGML 998 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~ 998 (1205)
+ ++.++.+|..|++.|+++|
T Consensus 83 ~---~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 83 P---DHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred C---CCHHHHHHHHHHHHHHHhC
Confidence 9 7789999999999999876
No 101
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=2e-19 Score=172.11 Aligned_cols=96 Identities=23% Similarity=0.425 Sum_probs=86.0
Q ss_pred HHHHHHHhhhhh------ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccc
Q 000973 900 RMCLRDVCNRML------YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAY 973 (1205)
Q Consensus 900 r~~lr~il~~l~------~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 973 (1205)
+..|+.|+..+. .+..+++|..|++...+|+||++|++||||+||++||++|.|.|+.+|..||+|||+||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566666666 44568899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeeechhhhhhhHhhhh
Q 000973 974 NGNDYNGTRIVSRGYELRDAVHGML 998 (1205)
Q Consensus 974 N~~~~~~s~i~~~A~~l~~~~~~~~ 998 (1205)
|++ ++.++.+|..|++.|..++
T Consensus 82 n~~---~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 82 NQE---GSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCC---CCHHHHHHHHHHHHHHHhC
Confidence 999 7789999999999998753
No 102
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=6.3e-18 Score=179.42 Aligned_cols=186 Identities=26% Similarity=0.358 Sum_probs=126.2
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..+|++++|++.++..++-++.... ..-.+..++|||||||+||||||+.||++++ +.|..+++..+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~--------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i 86 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAK--------KRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAI 86 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHH--------CTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHH--------hcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhh
Confidence 4589999999999999877664311 0113446899999999999999999999996 56666666432
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-----C-----------
Q 000973 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-----R----------- 518 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-----~----------- 518 (1205)
- + .+ .+..++... ....||||||||.| ...+...|+..|+...- .
T Consensus 87 ~-k-~~----dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 87 E-K-AG----DLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp --S-CH----HHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred h-h-HH----HHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 1 1 11 122233332 23469999999999 45667778888875321 1
Q ss_pred CcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHH
Q 000973 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKAL 595 (1205)
Q Consensus 519 ~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L 595 (1205)
..+.+||||++...|...|+. ||..+..+..++.++...|++.....++..++.+...+||.++.| +++-..++
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHH
Confidence 258899999999999999999 999888999999999999999999999999999999999999988 44433333
No 103
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-18 Score=187.01 Aligned_cols=218 Identities=28% Similarity=0.359 Sum_probs=164.7
Q ss_pred ccccCChhHHHHHhhhhhcccccccccccccc-cCCCcceeeecCCCChhHHHHHHHHhhhhhc----CCeEEEEEecch
Q 000973 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRKGA 452 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i~~~ 452 (1205)
|+.++--.+.|+.|..++...+.+.+.-..-. +...+-||||||||||||+|++|+|+.+.-. .+...++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 56666667788888877655444433322222 2345679999999999999999999998432 356678999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh---cCC--ceEEEeccCCcccccchh----hhHHHHHHHHHHHHHhhCcccCCcEEE
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQR---NQP--SIIFFDEIDGLAPVRSSK----QEQIHNSIVSTLLALMDGLDSRGQVVL 523 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~---~~p--~VL~IDEid~L~~~r~~~----~~~~~~~v~~~Ll~~ld~~~~~~~viV 523 (1205)
.++++|++++.+.+..+|+.+.. ... ..++|||+++|+..|.+. .....-++++.||..||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 99999999999999999987754 222 356799999998777322 223467899999999999999999999
Q ss_pred EccccccccccccccCCCCccccccCCCCCchhhhhhhhcccccc---CC----C----------CchhHHHHHhhh-hh
Q 000973 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---KQ----P----------PSRELKSELAAS-CV 585 (1205)
Q Consensus 524 I~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~---~~----~----------~~~~~l~~LA~~-t~ 585 (1205)
++|+|..+.||.|+.. |-+-+.++++|+...+.+|++..+..+ ++ . ........++.. +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999998 999999999999999999998766442 11 0 011112233333 48
Q ss_pred cccchhHHHHhH
Q 000973 586 GYCGADLKALCT 597 (1205)
Q Consensus 586 G~sgadI~~L~~ 597 (1205)
|++|+-|+.|=-
T Consensus 379 gLSGRtlrkLP~ 390 (423)
T KOG0744|consen 379 GLSGRTLRKLPL 390 (423)
T ss_pred CCccchHhhhhH
Confidence 999998887744
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.74 E-value=5.6e-18 Score=169.14 Aligned_cols=130 Identities=40% Similarity=0.735 Sum_probs=115.2
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcC-CceEEEeccCCcccccc
Q 000973 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRS 494 (1205)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~-p~VL~IDEid~L~~~r~ 494 (1205)
|||+||||||||++|+.+|+.++ .+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 69999999999999999999985 7889999999998889999999999999998887 99999999999998774
Q ss_pred hhhhHHHHHHHHHHHHHhhCcccC-CcEEEEccccccccccccccCCCCccccccCCC
Q 000973 495 SKQEQIHNSIVSTLLALMDGLDSR-GQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (1205)
Q Consensus 495 ~~~~~~~~~v~~~Ll~~ld~~~~~-~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~ 551 (1205)
.........++..|+..|+..... .+++||++||.++.+++.|++ +||+..|+||+
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 444556778899999999977665 569999999999999999997 79999998874
No 105
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-18 Score=194.31 Aligned_cols=215 Identities=22% Similarity=0.282 Sum_probs=162.1
Q ss_pred CCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCe
Q 000973 364 GADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK 443 (1205)
Q Consensus 364 ~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~ 443 (1205)
+....++..+-..+|+.|+--.+.|+.|.+-+...+...+.|.+.|....+|.|||||||||||+++.|+|+.+...
T Consensus 186 ~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd--- 262 (457)
T KOG0743|consen 186 GGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD--- 262 (457)
T ss_pred CCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCc---
Confidence 34455555666689999999999999999988888999999999999999999999999999999999999999643
Q ss_pred EEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhh-------HHHHHHHHHHHHHhhCcc
Q 000973 444 VSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE-------QIHNSIVSTLLALMDGLD 516 (1205)
Q Consensus 444 ~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~-------~~~~~v~~~Ll~~ld~~~ 516 (1205)
++.+..+.. +.... ++.++..+.. .+||+|.|||+-+-.+..... ....-.++.||+.+|++-
T Consensus 263 --IydLeLt~v-----~~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 263 --IYDLELTEV-----KLDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred --eEEeeeccc-----cCcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 333333321 11122 6666665543 479999999976542222111 123467889999999998
Q ss_pred cCC--cEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc--ccchhH
Q 000973 517 SRG--QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG--YCGADL 592 (1205)
Q Consensus 517 ~~~--~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G--~sgadI 592 (1205)
+.. .-|||.|||..+.|||||+||||.+..|+++..+.++...++..++..-. +..+..++.....+ .++|++
T Consensus 333 Sscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V 409 (457)
T KOG0743|consen 333 SSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQV 409 (457)
T ss_pred ccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHH
Confidence 765 78999999999999999999999999999999999999999999887643 22333444443333 466666
Q ss_pred HH
Q 000973 593 KA 594 (1205)
Q Consensus 593 ~~ 594 (1205)
..
T Consensus 410 ~e 411 (457)
T KOG0743|consen 410 AE 411 (457)
T ss_pred HH
Confidence 54
No 106
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=4e-19 Score=170.33 Aligned_cols=84 Identities=18% Similarity=0.350 Sum_probs=79.1
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000973 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.++.+++|..||+..++|+||++|++||||+||++||.++.|.|+++|..||.|||.||++||++ +|.|+.+|..|+
T Consensus 20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~---~s~i~~~A~~L~ 96 (105)
T cd05515 20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEP---DSQIYKDALTLQ 96 (105)
T ss_pred CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999998 788999999999
Q ss_pred hhHhhhh
Q 000973 992 DAVHGML 998 (1205)
Q Consensus 992 ~~~~~~~ 998 (1205)
+.|....
T Consensus 97 ~~~~~~~ 103 (105)
T cd05515 97 KVLLETK 103 (105)
T ss_pred HHHHHHH
Confidence 9997654
No 107
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=5.5e-19 Score=169.00 Aligned_cols=82 Identities=27% Similarity=0.346 Sum_probs=77.5
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhh
Q 000973 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRD 992 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~ 992 (1205)
+..+++|..+++...+|+||++|++||||+||++||++|.|.|+.+|..|+.|||+||..||++ +|.|+.+|..|++
T Consensus 23 ~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~---~S~i~~~A~~L~~ 99 (106)
T cd05525 23 QSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGR---KSPIGRDVCRLRK 99 (106)
T ss_pred CcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred hHhhh
Q 000973 993 AVHGM 997 (1205)
Q Consensus 993 ~~~~~ 997 (1205)
.|+..
T Consensus 100 ~f~~~ 104 (106)
T cd05525 100 AYYQA 104 (106)
T ss_pred HHHHc
Confidence 99763
No 108
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=7.6e-19 Score=174.15 Aligned_cols=97 Identities=29% Similarity=0.411 Sum_probs=88.5
Q ss_pred HHHHHHhhhhh---ccccccccccccCCC-CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000973 901 MCLRDVCNRML---YDKRFSAFHYPVTDE-DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 901 ~~lr~il~~l~---~~k~~~~F~~Pv~~~-~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
..|..++.+++ .++.+++|..||+.. .+|+||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 27 ~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~ 106 (128)
T cd05529 27 ERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEP 106 (128)
T ss_pred HHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 33445556666 899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhhhc
Q 000973 977 DYNGTRIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~ 1000 (1205)
++.++.+|..|++.|..++..
T Consensus 107 ---~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 107 ---NSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred ---CCHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999988764
No 109
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=6e-19 Score=168.14 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=77.7
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000973 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.+..+++|..+++...+|+||++|++||||+||++||+++.|.|+.+|..||+|||.||+.||++ +|.|+.+|..|+
T Consensus 20 gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~---~s~i~~~A~~l~ 96 (103)
T cd05517 20 GRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEP---GSQVYKDANAIK 96 (103)
T ss_pred CCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999 788999999999
Q ss_pred hhHhh
Q 000973 992 DAVHG 996 (1205)
Q Consensus 992 ~~~~~ 996 (1205)
+.|..
T Consensus 97 ~~f~~ 101 (103)
T cd05517 97 KIFTA 101 (103)
T ss_pred HHHHh
Confidence 99864
No 110
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=6.3e-19 Score=170.90 Aligned_cols=98 Identities=17% Similarity=0.315 Sum_probs=86.7
Q ss_pred HHHHhhhhhc------cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000973 903 LRDVCNRMLY------DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 903 lr~il~~l~~------~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
|..|+..+.. +..+.+|..+++...+|+||++|++||||+||++||+++.|.|+.+|..||+|||+||+.||++
T Consensus 7 c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 86 (113)
T cd05524 7 CQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKP 86 (113)
T ss_pred HHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4555566554 3345679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhhhccCh
Q 000973 977 DYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
+|.++.+|..|++.|++.++++..
T Consensus 87 ---~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 87 ---DSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999998876653
No 111
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=9.3e-19 Score=166.74 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=77.9
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000973 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.+..+.+|..+|+...+|+||++|++||||+||++||.++.|.|+++|..||.|||.||+.||++ +|.|+.+|..|+
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~---~s~i~~~A~~le 96 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEE---GSQVYEDANILE 96 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999 788999999999
Q ss_pred hhHhh
Q 000973 992 DAVHG 996 (1205)
Q Consensus 992 ~~~~~ 996 (1205)
++|..
T Consensus 97 ~~~~~ 101 (103)
T cd05518 97 KVLKE 101 (103)
T ss_pred HHHHh
Confidence 99875
No 112
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=1.1e-18 Score=166.30 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=78.1
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000973 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.+..+++|..+++...+|+||+||++||||+||++||++|.|.++.+|..||+|||.||+.||++ ++.++.+|..|+
T Consensus 20 g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~---~s~i~~~A~~L~ 96 (103)
T cd05520 20 GQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP---NSRIYKDAEKLQ 96 (103)
T ss_pred CCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999 788999999999
Q ss_pred hhHhh
Q 000973 992 DAVHG 996 (1205)
Q Consensus 992 ~~~~~ 996 (1205)
+.|++
T Consensus 97 ~~f~~ 101 (103)
T cd05520 97 KLMQA 101 (103)
T ss_pred HHHHH
Confidence 99975
No 113
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-16 Score=198.69 Aligned_cols=403 Identities=21% Similarity=0.222 Sum_probs=224.1
Q ss_pred ccccCCh-hHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEecc
Q 000973 378 FDDIGGL-SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKG 451 (1205)
Q Consensus 378 ~~~i~Gl-~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~~ 451 (1205)
++-++|. ++.+..+.+++.. ...++-+|+|.||+|||.++.-+|+.+.... ....++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4456666 7777777777665 4447889999999999999999999875442 2234444444
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHh-hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 452 ADVL--SKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~--~~~~g~~e~~l~~lf~~a~-~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
..++ .++.|+.+.+++.+..++. .....||||||+|.|++.+...+ ...+.+ +| .....++.+-+||||+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~n-lL---kp~L~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAAN-LL---KPLLARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHH-hh---HHHHhcCCeEEEeccc
Confidence 4333 4678999999999999988 45677999999999998776522 111121 22 2223355699999887
Q ss_pred ccc-----cccccccCCCCccccccCCCCCchhhhhhhhccccccCC----CCchhHHH---HHh--hhhhcccchhHHH
Q 000973 529 RVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ----PPSRELKS---ELA--ASCVGYCGADLKA 594 (1205)
Q Consensus 529 ~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~----~~~~~~l~---~LA--~~t~G~sgadI~~ 594 (1205)
.-+ .-+|+|.+ ||+ .+.++.|+.+....||......+.. .+....+. .+. ..+..+++.-...
T Consensus 325 ~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aid 401 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAID 401 (898)
T ss_pred HHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhccc
Confidence 433 25899999 895 5779999998888888765555222 12111111 111 1112233333333
Q ss_pred HhHHHHHHHHHH--hCCceec----cC-----------CceE---------Eeccceeee----------ehhhhhhhcc
Q 000973 595 LCTEAAIRAFRE--KYPQVYT----SD-----------DKFL---------IDVDSVTVE----------KYHFIEAMST 638 (1205)
Q Consensus 595 L~~eA~~~a~rr--~~~~i~~----~~-----------~~~~---------~d~~~~~It----------~~df~~al~~ 638 (1205)
++.+|+...... ..+.... .. .++. ........+ ...+...+..
T Consensus 402 l~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~ 481 (898)
T KOG1051|consen 402 LEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKL 481 (898)
T ss_pred HHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhcc
Confidence 333333211110 0000000 00 0000 000000000 0001111100
Q ss_pred cCccc---------cccc-----------------------------eecccccchhhhhHH------HHHHHHHhhhhh
Q 000973 639 ITPAA---------HRGA-----------------------------TVHSRPLSLVVAPCL------QRHLQKAMNYIS 674 (1205)
Q Consensus 639 i~ps~---------~r~~-----------------------------~~~~~~~~~~~i~~l------~~~L~~~~~~l~ 674 (1205)
..... .+.. .+......|..++-. ...|..+.+.|.
T Consensus 482 ~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~ 561 (898)
T KOG1051|consen 482 KKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLH 561 (898)
T ss_pred ccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHH
Confidence 00000 0000 000001123333211 122333333332
Q ss_pred -hcCCCCccchhhh-hhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhccc--CccccCCCcc------ccC--
Q 000973 675 -DIFPPLGMSSELT-KLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPA------LLS-- 742 (1205)
Q Consensus 675 -~i~p~~~~~~~~~-~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~------l~~-- 742 (1205)
+|+.+-.....+. .+.....|...| .+..-+||+||.|+|||.||+|||..+.+ -.|++|++++ +.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp 640 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSP 640 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCC
Confidence 2222211111111 111223355555 33446999999999999999999998644 3689999886 222
Q ss_pred CCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhc---------CCCCCeEEeccCCcC
Q 000973 743 DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVP 810 (1205)
Q Consensus 743 ~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~---------~~~~~v~vIattn~~ 810 (1205)
.-|.|.+ ...+++...++.+.|||||||||+ ++..+++.|+++|+.- -++.++|||+|+|..
T Consensus 641 ~gyvG~e--~gg~LteavrrrP~sVVLfdeIEk----Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 641 PGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEK----AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred cccccch--hHHHHHHHHhcCCceEEEEechhh----cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 1125553 466888888999999999999998 4557778888899863 126799999999975
No 114
>smart00297 BROMO bromo domain.
Probab=99.71 E-value=2.5e-18 Score=166.30 Aligned_cols=102 Identities=29% Similarity=0.559 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000973 896 LRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 896 lrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.+.+...|..|+..+..++.+++|..||++..+|+|+++|++||||++|++||++|.|.|+.+|..||++||+||..||+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~ 84 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNG 84 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhc
Q 000973 976 NDYNGTRIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~ 1000 (1205)
+ ++.++.+|..|++.|+..|++
T Consensus 85 ~---~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 85 P---DSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred C---CCHHHHHHHHHHHHHHHHHhh
Confidence 8 678999999999999998875
No 115
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9e-17 Score=178.43 Aligned_cols=210 Identities=27% Similarity=0.428 Sum_probs=147.7
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~ 455 (1205)
-.|++|+-.......|..+.... .+ .+..-.+-++||||||||||||++|+.||...+ ..+-.+.+.++.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aT-aN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SG-----lDYA~mTGGDVA 421 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIAT-AN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSG-----LDYAIMTGGDVA 421 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHh-cc----cccccchhhheeeeCCCCCCchHHHHHHHhhcC-----CceehhcCCCcc
Confidence 34667766666666665543221 11 111224557999999999999999999999876 444444555433
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-CceEEEeccCCcccccchhh-hHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000973 456 SKWVGEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 456 ~~~~g~~e~~l~~lf~~a~~~~-p~VL~IDEid~L~~~r~~~~-~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
. .-.+.-..+..+|+-+.... .-+|||||+|+++-.|.... .......++.||-.. -....+++++.+||+|..+
T Consensus 422 P-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT--GdqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 422 P-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT--GDQSRDIVLVLATNRPGDL 498 (630)
T ss_pred c-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh--cccccceEEEeccCCccch
Confidence 2 12345567889999998755 45899999999886665432 222334455544322 2345678999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCC--------------------------CchhHHHHHhhhhhcc
Q 000973 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQP--------------------------PSRELKSELAASCVGY 587 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~--------------------------~~~~~l~~LA~~t~G~ 587 (1205)
|.++.. ||+.+|+||+|..++|..||..|+.++-.. .....+.+.|..|.||
T Consensus 499 DsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 499 DSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred hHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999988 999999999999999999998887664211 2234557889999999
Q ss_pred cchhHHHHhHHHH
Q 000973 588 CGADLKALCTEAA 600 (1205)
Q Consensus 588 sgadI~~L~~eA~ 600 (1205)
+|++|..|+....
T Consensus 577 SGREiakLva~vQ 589 (630)
T KOG0742|consen 577 SGREIAKLVASVQ 589 (630)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999976544
No 116
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=9.6e-18 Score=160.44 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=78.3
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhh
Q 000973 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRD 992 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~ 992 (1205)
++.+++|..+++...+|+||++|++||||+||++||.++.|.|+.+|..|+.|||.||+.||++ ++.++.+|..|++
T Consensus 22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~---~s~i~~~A~~l~~ 98 (104)
T cd05522 22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN---DSQEYKDAVLLEK 98 (104)
T ss_pred CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred hHhhh
Q 000973 993 AVHGM 997 (1205)
Q Consensus 993 ~~~~~ 997 (1205)
.|+.+
T Consensus 99 ~f~~l 103 (104)
T cd05522 99 EARLL 103 (104)
T ss_pred HHHHh
Confidence 99864
No 117
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=1.1e-17 Score=159.84 Aligned_cols=82 Identities=27% Similarity=0.441 Sum_probs=75.6
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhh
Q 000973 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRD 992 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~ 992 (1205)
+..+..|..+++...+|+||++|++||||+||++||++ |.|+.+|..|+.|||+||+.||++ ++.|+.+|..|++
T Consensus 22 ~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~---~s~i~~~A~~le~ 96 (106)
T cd05521 22 IEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTK---GSVIYKYALILEK 96 (106)
T ss_pred CCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHH
Confidence 33456899888888999999999999999999999998 999999999999999999999998 7889999999999
Q ss_pred hHhhhhh
Q 000973 993 AVHGMLS 999 (1205)
Q Consensus 993 ~~~~~~~ 999 (1205)
.|...+.
T Consensus 97 ~~~~~~~ 103 (106)
T cd05521 97 YINDVII 103 (106)
T ss_pred HHHHhhc
Confidence 9987764
No 118
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.65 E-value=2.3e-17 Score=157.61 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=79.4
Q ss_pred Hhhhhhc-cccccccccccCC---C--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCC
Q 000973 906 VCNRMLY-DKRFSAFHYPVTD---E--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYN 979 (1205)
Q Consensus 906 il~~l~~-~k~~~~F~~Pv~~---~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~ 979 (1205)
++..+.. -+..++|..||.+ . .+|+|+++|++||||+||++||++|.|.++++|..||.|||+||..||++
T Consensus 8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~--- 84 (109)
T cd05492 8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA--- 84 (109)
T ss_pred HHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC---
Confidence 3334333 3456899999963 2 59999999999999999999999999999999999999999999999999
Q ss_pred cceeeechhhhhhhHhhhhhcc
Q 000973 980 GTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 980 ~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
+|.++.+|..|..-+..-+.+|
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999998887776654
No 119
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=6.8e-16 Score=173.68 Aligned_cols=177 Identities=27% Similarity=0.376 Sum_probs=128.7
Q ss_pred cccccccCChhHHHH---HhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 375 SVSFDDIGGLSEYID---ALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~---~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
.-++++++|++..+. -|.++|.. ....+++|||||||||||||++||+.++ ..|..+++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~~~sA 81 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTN-----AAFEALSA 81 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhC-----CceEEecc
Confidence 456778888877663 34444433 3445899999999999999999999985 56777666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
.. .+.+.++.+|+.++. ++..||||||||.|- ...+..||-.|+ .+.+++||||
T Consensus 82 v~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE----~G~iilIGAT 139 (436)
T COG2256 82 VT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVE----NGTIILIGAT 139 (436)
T ss_pred cc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhc----CCeEEEEecc
Confidence 43 344567788887754 235799999999983 345566887776 6788999887
Q ss_pred --cccccccccccCCCCccccccCCCCCchhhhhhhhccccc--cC-----CCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000973 528 --NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WK-----QPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 528 --n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~--~~-----~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
|+...|+++|++ |+ .++.+.+.+.++...+++..+.. .+ ..++++.++.|+..+.| |.+.+++.
T Consensus 140 TENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 140 TENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred CCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 556679999999 77 77899999999999999873322 22 23567777888877666 55555543
No 120
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.63 E-value=2.8e-17 Score=151.77 Aligned_cols=83 Identities=33% Similarity=0.570 Sum_probs=77.3
Q ss_pred HHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcce
Q 000973 903 LRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTR 982 (1205)
Q Consensus 903 lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~ 982 (1205)
|+.||+.+..++.+++|..||++..+|+|+++|++||||++|++||++|.|.++.+|..||++||+||..||++ ++.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~---~s~ 77 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPP---DSP 77 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCT---TSH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCC---cCH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999 677
Q ss_pred eeechh
Q 000973 983 IVSRGY 988 (1205)
Q Consensus 983 i~~~A~ 988 (1205)
++.+|.
T Consensus 78 ~~~~A~ 83 (84)
T PF00439_consen 78 IYKAAE 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888875
No 121
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.63 E-value=5.6e-17 Score=153.79 Aligned_cols=95 Identities=34% Similarity=0.557 Sum_probs=88.5
Q ss_pred HHHHHHhhhhhcc--ccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCC
Q 000973 901 MCLRDVCNRMLYD--KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDY 978 (1205)
Q Consensus 901 ~~lr~il~~l~~~--k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~ 978 (1205)
.+|..++..+..+ +.+++|..||++..+|+|+++|++||||++|++||.+|.|.++.+|.+||+|||.||..||+.
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~-- 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP-- 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC--
Confidence 4567788888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeechhhhhhhHhhhh
Q 000973 979 NGTRIVSRGYELRDAVHGML 998 (1205)
Q Consensus 979 ~~s~i~~~A~~l~~~~~~~~ 998 (1205)
++.++.+|..|+..|+..+
T Consensus 81 -~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 -GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred -CCHHHHHHHHHHHHHHHhC
Confidence 6789999999999998753
No 122
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.9e-16 Score=173.46 Aligned_cols=180 Identities=16% Similarity=0.227 Sum_probs=135.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCC-ceeeeccchhhHH----
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTP-SILYIPQFNLWWE---- 778 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p-~ILfiDEid~l~~---- 778 (1205)
..+|||||||||||++|+-||... |+.+..+.+.++.. .+.+...++.++|+.|+...- -+|||||+|.++-
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVAP--lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVAP--LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCccc--cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 479999999999999999999997 88887777666542 245666789999999988654 4889999999872
Q ss_pred -hHHHHHHHHHHHHHHhc-CCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhcc
Q 000973 779 -NAHEQLRAVLLTLLEEL-PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEG 856 (1205)
Q Consensus 779 -~~~~~~~~~ll~lL~~~-~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~ 856 (1205)
..++....+|+.+|-.. +....|+++.+||+| .+||..+..+++ .+++|++|..++|..++..+|.+++..+..
T Consensus 462 tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp-gdlDsAV~DRid--e~veFpLPGeEERfkll~lYlnkyi~~~~~- 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP-GDLDSAVNDRID--EVVEFPLPGEEERFKLLNLYLNKYILKPAT- 537 (630)
T ss_pred hhhcHHHHHHHHHHHHHhcccccceEEEeccCCc-cchhHHHHhhhh--heeecCCCChHHHHHHHHHHHHHHhcCcCC-
Confidence 25667777888888765 345677778889998 899997777777 999999999999999999999998643311
Q ss_pred CCCCCC----------CCCCC------CCCCCCCCccCCCchhhhhHhHHH
Q 000973 857 RSKKPQ----------ESVSL------PELPKVPTVESGPKASELKAKVEA 891 (1205)
Q Consensus 857 ~~~~~~----------~~~~l------~~Lp~~~~~~~g~S~aELk~~~ea 891 (1205)
.+.+. ..+.+ ..+..+...++|+||.||..++..
T Consensus 538 -~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 538 -SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred -CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11110 11111 113334455899999999887733
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.6e-15 Score=163.32 Aligned_cols=190 Identities=23% Similarity=0.312 Sum_probs=143.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
.-+|++.+|++++|+.|.-++.... ..-...-|+||+||||.||||||+.+|++++ +++-..++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk--------~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-----vn~k~tsGp~l 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAK--------KRGEALDHVLLFGPPGLGKTTLAHIIANELG-----VNLKITSGPAL 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHH--------hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-----CCeEecccccc
Confidence 4578999999999999988876522 1224456999999999999999999999996 55555555543
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----------------C
Q 000973 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------R 518 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~----------------~ 518 (1205)
- ...-+..++.... ..+||||||||.|.+ .+-..|.-.|+.+.- -
T Consensus 89 e------K~gDlaaiLt~Le--~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 89 E------KPGDLAAILTNLE--EGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred c------ChhhHHHHHhcCC--cCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 2 1122333333333 347999999999953 334445566654321 1
Q ss_pred CcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000973 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 519 ~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
..+.+||||++...|...|+. ||.....+..++.++...|+......++..++.+...++|.++.| +++-...|++.
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHH
Confidence 368999999999999999998 999999999999999999999999999999999988999999888 45544444443
Q ss_pred H
Q 000973 599 A 599 (1205)
Q Consensus 599 A 599 (1205)
.
T Consensus 227 V 227 (332)
T COG2255 227 V 227 (332)
T ss_pred H
Confidence 3
No 124
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=4.4e-15 Score=170.77 Aligned_cols=192 Identities=22% Similarity=0.300 Sum_probs=136.3
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
+|++++|++++++.|..++..... .-..+.+++|+||||||||++|+++|++++. .+..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEK 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcC
Confidence 689999999999999988754211 1134568999999999999999999999853 222333221110
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc----------------cCCc
Q 000973 457 KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SRGQ 520 (1205)
Q Consensus 457 ~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 520 (1205)
.+ .+...+... ..+.||||||||.+.+. ....|+..|+... ....
T Consensus 69 --~~----~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 129 (305)
T TIGR00635 69 --PG----DLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP 129 (305)
T ss_pred --ch----hHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCC
Confidence 11 111222222 34579999999988531 2233444444221 1124
Q ss_pred EEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHH
Q 000973 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 521 viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~ 600 (1205)
+++|++||.+..++++|++ ||...+.|++|+.+++.+|++..+......++++.++.|+..+.|.. +.+..+|..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred eEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 7889999999999999988 99888999999999999999998888888889999999999988854 66677777665
Q ss_pred HHH
Q 000973 601 IRA 603 (1205)
Q Consensus 601 ~~a 603 (1205)
..+
T Consensus 207 ~~a 209 (305)
T TIGR00635 207 DFA 209 (305)
T ss_pred HHH
Confidence 444
No 125
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.58 E-value=6e-16 Score=154.44 Aligned_cols=121 Identities=23% Similarity=0.446 Sum_probs=102.6
Q ss_pred eeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccC-CceeeeccchhhHHhH----
Q 000973 706 LLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT-PSILYIPQFNLWWENA---- 780 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~-p~ILfiDEid~l~~~~---- 780 (1205)
+||+||||||||++|+++|+.+ +.+++.++.+.+.+.+ .+.++..+..+|..|+... ||||||||+|.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSY-AGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSS-TTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhc-cccccccccccccccc-ccccccccccccccccccccceeeeeccchhccccccccc
Confidence 6899999999999999999999 8999999999998664 7899999999999999887 9999999999998653
Q ss_pred ---HHHHHHHHHHHHHhcCCC-CCeEEeccCCcCCccccCCCc-cccCCCceeeec
Q 000973 781 ---HEQLRAVLLTLLEELPSH-LPILLLGSSSVPLAEVEGDPS-TVFPLRSVYQVE 831 (1205)
Q Consensus 781 ---~~~~~~~ll~lL~~~~~~-~~v~vIattn~~~~~Ld~~~~-~~f~~r~ii~~~ 831 (1205)
...+.+.|+.+|+..... .+++||+|||.+ +.+++.+. .+|. ..|+|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~-~~i~~~l~~~rf~--~~i~~~ 131 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP-DKIDPALLRSRFD--RRIEFP 131 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG-GGSCHHHHSTTSE--EEEEE-
T ss_pred ccccccccceeeecccccccccccceeEEeeCCh-hhCCHhHHhCCCc--EEEEcC
Confidence 567788888899888764 679999999996 88888333 4444 666665
No 126
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.58 E-value=8.7e-15 Score=169.93 Aligned_cols=196 Identities=24% Similarity=0.276 Sum_probs=140.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..+|++++|+++.+..|..++..... .-.++.++||+||||||||++|+++|++++. .+..+.+..+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~~~~~ 87 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSGPAL 87 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecccc
Confidence 35899999999999999887754110 1145678999999999999999999999863 2333333221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc----------------cC
Q 000973 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SR 518 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~----------------~~ 518 (1205)
. ....+..++... ..++||||||||.+... +...|+..|+... .-
T Consensus 88 ~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 E------KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred c------ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1 111223333332 34679999999988521 1222344443221 01
Q ss_pred CcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000973 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 519 ~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
..+++|++||++..++++|++ ||...+.|+.|+.+++.+||+..+...+..++++.+..|+..+.|.. +.+..++..
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 247889999999999999988 99889999999999999999999998888999999999999998844 667777766
Q ss_pred HHHHHHH
Q 000973 599 AAIRAFR 605 (1205)
Q Consensus 599 A~~~a~r 605 (1205)
+...+..
T Consensus 226 ~~~~a~~ 232 (328)
T PRK00080 226 VRDFAQV 232 (328)
T ss_pred HHHHHHH
Confidence 5554443
No 127
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1e-14 Score=172.36 Aligned_cols=192 Identities=19% Similarity=0.183 Sum_probs=140.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|+.++... ..+..+||+||+|||||++|+++|+.+.....
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3468999999999999998887641 22345899999999999999999999864311
Q ss_pred --------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 443 --------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
...++.++++.- .+-..++.+.+.+. .+...|+||||+|.|. ...++.||.
T Consensus 81 C~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 112333333211 11223344433332 2345699999999883 446777888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+. ....+++|++|+.+..|.+++++ || ..+.|..++.++..++|+..+...+..++.+.+..|+..+.| +.+
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 8874 45678999999999999999999 88 568999999999999999998888888899999999988877 455
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
+.-+++..++
T Consensus 218 dAL~lLeq~i 227 (484)
T PRK14956 218 DMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 128
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2e-14 Score=174.98 Aligned_cols=192 Identities=20% Similarity=0.187 Sum_probs=141.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++.. + +.+..+||+||+|||||++|++||+.+....
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 346899999999999999998754 1 2345679999999999999999999885421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.++..+- .+-..++.+++.+. .....||||||+|.|. ....+.||.
T Consensus 79 Cr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHH
Confidence 1123444444321 11223444444433 2335699999999983 334667888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+. ...+++||++||.+..|.+.|++ || ..|.|..++.++...+|...+...++.++.+.+..|+..+.| +.+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34578888899999999999998 88 789999999999999999999888888899998889988877 345
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
+..+++..+.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 129
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.55 E-value=1e-14 Score=186.71 Aligned_cols=202 Identities=21% Similarity=0.223 Sum_probs=138.7
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh------
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD------ 453 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~------ 453 (1205)
++.|++.+++.|.+++..+.... -....++||+||||||||++|++||..++.. |+.+++..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~-----~~~i~~~~~~~~~~ 388 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRK-----FVRFSLGGVRDEAE 388 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCC-----eEEEeCCCcccHHH
Confidence 48999999999999776532211 1223479999999999999999999999643 44333221
Q ss_pred hH---HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCc-----c--------c
Q 000973 454 VL---SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-----D--------S 517 (1205)
Q Consensus 454 l~---~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~-----~--------~ 517 (1205)
+. ..|+|.....+...|..+....| ||||||||.+.+.... ...+.|+..|+.. . .
T Consensus 389 i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-------~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 389 IRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-------DPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-------CHHHHHHHhcCHHhcCccccccCCceec
Confidence 11 24566666667777777766656 8999999999753221 1234466655521 0 1
Q ss_pred CCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhcccc-----c-----cCCCCchhHHHHHhhh-hhc
Q 000973 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-----K-----WKQPPSRELKSELAAS-CVG 586 (1205)
Q Consensus 518 ~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~-----~-----~~~~~~~~~l~~LA~~-t~G 586 (1205)
..++++|+|||.++.|+++|++ || .+|.|+.|+.+++.+|++.++. . ..+.++++.+..|+.. +..
T Consensus 461 ~s~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred cCCEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 2478999999999999999999 99 5799999999999999987652 1 1345677777777763 334
Q ss_pred ccchhHHHHhHHHHHHHH
Q 000973 587 YCGADLKALCTEAAIRAF 604 (1205)
Q Consensus 587 ~sgadI~~L~~eA~~~a~ 604 (1205)
+..+.|+..+...+..+.
T Consensus 538 ~g~R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 538 AGVRNLERQIEKICRKAA 555 (775)
T ss_pred cCChHHHHHHHHHHHHHH
Confidence 455566665555444433
No 130
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.7e-14 Score=173.95 Aligned_cols=192 Identities=21% Similarity=0.215 Sum_probs=140.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++..- +.+..+||+||+|||||++|+.||+.+....
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4568999999999999999987641 3345679999999999999999999986521
Q ss_pred ------------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHH----hhcCCceEEEeccCCcccccchhhhHHHHHHH
Q 000973 442 ------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (1205)
Q Consensus 442 ------------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a----~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~ 505 (1205)
....++.+++..- ..+ ..++.+++.+ ..++..|+||||+|.|. ....
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~--~gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~Aa 141 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASN--RGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAF 141 (700)
T ss_pred cccHHHHHHHcCCCCcceEeccccc--CCH----HHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHH
Confidence 0012334433311 112 2334444333 23445699999999983 3456
Q ss_pred HHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhh
Q 000973 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (1205)
Q Consensus 506 ~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~ 585 (1205)
+.||..|+. ...++++|++||.+..|.+.+++ || ..|.|..++.++..+.|+..+...+...+.+.+..|+..+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888884 34678888889999999999998 88 78999999999999999988877777788888888887776
Q ss_pred cccchhHHHHhHHHH
Q 000973 586 GYCGADLKALCTEAA 600 (1205)
Q Consensus 586 G~sgadI~~L~~eA~ 600 (1205)
| +.++..+++..+.
T Consensus 217 G-s~RdALsLLdQai 230 (700)
T PRK12323 217 G-SMRDALSLTDQAI 230 (700)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 5555556655444
No 131
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.54 E-value=4.1e-14 Score=171.14 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=145.3
Q ss_pred cccccccccc-cCChhH--HHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000973 371 QVDESVSFDD-IGGLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 371 ~~~~~~~~~~-i~Gl~~--~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
.+.+..+|++ ++|..+ +...++++...| + ...++++||||+|||||+|++++|+++........++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~ 182 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVV 182 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 4557889999 556544 344454443321 1 2235699999999999999999999997654446677
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 448 ~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
.+++.++...+..........-|..... .+.||+|||||.+.+.. .....|+..++.+...+..+||++.
T Consensus 183 yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 183 YVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE---------RTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred EEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCCCcEEEECC
Confidence 7788888776655443222222332222 46799999999886432 1233455555555455566777776
Q ss_pred ccccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHH
Q 000973 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 528 n~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
..|.. +++.|++ ||. .++.|..|+.++|.+||+..+...+..+++++++.||..+.| +.+.|..++......
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 66655 6788888 885 578999999999999999999888888999999999998776 556666666655444
Q ss_pred HH
Q 000973 603 AF 604 (1205)
Q Consensus 603 a~ 604 (1205)
+.
T Consensus 330 ~~ 331 (450)
T PRK00149 330 AS 331 (450)
T ss_pred HH
Confidence 43
No 132
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.9e-15 Score=161.25 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=119.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--------ccCccccCCCccccCCCCCCChhhHHHHhhcccccc---CC--ceeee
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--------EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRT---TP--SILYI 770 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--------~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~---~p--~ILfi 770 (1205)
+-+||+||||||||.|+||+|+.| ....++.++...|+++|+ +++.+.+.++|++.... .. -.|+|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF-sESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF-SESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH-hhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 348999999999999999999975 234577888899999995 88899999999876542 12 35669
Q ss_pred ccchhhHHh-----------HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000973 771 PQFNLWWEN-----------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 771 DEid~l~~~-----------~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
||+++|... ..-+++++|++.||.+....+|++++|+|.. +.||. +..=+...+++|.+|+...++
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~-~siD~--AfVDRADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT-DSIDV--AFVDRADIVFYVGPPTAEAIY 333 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH-HHHHH--HhhhHhhheeecCCccHHHHH
Confidence 999999832 3458899999999999999999999999987 88887 666555688999999999999
Q ss_pred hhHHHHHHHHH
Q 000973 840 LFLGRLIEAAV 850 (1205)
Q Consensus 840 ~i~~~~l~~~~ 850 (1205)
+|++..++.+.
T Consensus 334 ~IlkscieEL~ 344 (423)
T KOG0744|consen 334 EILKSCIEELI 344 (423)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.52 E-value=1e-13 Score=165.74 Aligned_cols=209 Identities=16% Similarity=0.207 Sum_probs=141.5
Q ss_pred ccccccccc-cCChhHH--HHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 372 VDESVSFDD-IGGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 372 ~~~~~~~~~-i~Gl~~~--k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
.++..+|++ ++|..+. ...+.++...| + ...++++||||+|+|||+|++++++++........++.
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~y 171 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVY 171 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEE
Confidence 447789999 6675553 33343333221 1 23457899999999999999999999875533456667
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
+++.++...+...........|.... ....+|+|||||.+.+.. .....|+..++.+...+..+||++..
T Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 172 VSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred EEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 77877776655433221111222211 235699999999986432 12234555555544455566776666
Q ss_pred cccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHH
Q 000973 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a 603 (1205)
.|.. +++.|++ ||. ..+.|+.|+.++|..||+..+...+..+++++++.||....+ +.++|..++......+
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6654 5678887 885 479999999999999999999988889999999999988765 5667777776655444
Q ss_pred H
Q 000973 604 F 604 (1205)
Q Consensus 604 ~ 604 (1205)
.
T Consensus 319 ~ 319 (405)
T TIGR00362 319 S 319 (405)
T ss_pred H
Confidence 3
No 134
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.5e-14 Score=173.76 Aligned_cols=192 Identities=21% Similarity=0.221 Sum_probs=137.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|+.++... +.+..+||+||+|||||++|+++|+.+.....
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3468999999999999999887541 23445699999999999999999999865311
Q ss_pred --------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 443 --------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
...++.+++.+. ..-..++.+...+. .+...|+||||+|.| ....++.||.
T Consensus 79 C~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLK 141 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLK 141 (944)
T ss_pred HHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHH
Confidence 111222333210 01122333333322 234469999999998 3557788999
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+. ..+.+++|++|+.+..|.+.|++ || ..|.|..++.++...+|+..+...++.++.+.+..|+..+.| +.+
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 34567777778888889889988 87 779999999999999998888777778888888888888766 455
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.++|..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 135
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.51 E-value=1.2e-13 Score=152.05 Aligned_cols=216 Identities=26% Similarity=0.322 Sum_probs=135.8
Q ss_pred cccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
|-.++..+..+.++|++..+..+.+- ..-..++||||||||||+||+.|+....... ..|+.
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq----------------~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve 195 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ----------------NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE 195 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc----------------CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE
Confidence 33344455555555555544444332 2224799999999999999999998875443 55677
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhh-----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEE
Q 000973 449 RKGADVLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVL 523 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~-----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viV 523 (1205)
+++.. .....++.+|+.++. .+..||||||||.+- ...+..||-.++ .+.|++
T Consensus 196 lSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD~fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 196 LSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQDTFLPHVE----NGDITL 253 (554)
T ss_pred Eeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhhcccceec----cCceEE
Confidence 66643 223446667766653 345699999999873 344555665554 678999
Q ss_pred Eccc--cccccccccccCCCCccccccCCCCCchhhhhhhhcccc------c--cCC-----CCchhHHHHHhhhhhccc
Q 000973 524 IGAT--NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR------K--WKQ-----PPSRELKSELAASCVGYC 588 (1205)
Q Consensus 524 I~at--n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~------~--~~~-----~~~~~~l~~LA~~t~G~s 588 (1205)
||+| |+...++.+|++ || .+|.+.....+....||..... . +++ .++..+++.|+..+.|-.
T Consensus 254 IGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9887 445568999998 77 6677778888888888865322 1 111 234566778888877755
Q ss_pred chhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccC
Q 000973 589 GADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 589 gadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
.+.|..|--.+.+.+.+... .....|+.+|+.+.|....
T Consensus 331 R~aLN~Lems~~m~~tr~g~-------------~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQ-------------SSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCC-------------cccceecHHHHHHHHhhcc
Confidence 55444432222222222211 1345678888888776543
No 136
>PRK06893 DNA replication initiation factor; Validated
Probab=99.51 E-value=1e-13 Score=152.58 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=128.5
Q ss_pred cccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 369 PLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
++...+..+|++++|.++.. .+..+... +.. .....++||||||||||+|++++|+++...+..+.|+.
T Consensus 6 ~~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 6 PIHQIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCCCCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 45566888999977655432 12111111 111 11235799999999999999999999877776676666
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCc-EEEEccc
Q 000973 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ-VVLIGAT 527 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~-viVI~at 527 (1205)
....... ...++... .+..+|+||||+.+.+... ....|+..++.....+. ++|++++
T Consensus 75 ~~~~~~~----------~~~~~~~~--~~~dlLilDDi~~~~~~~~---------~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 75 LSKSQYF----------SPAVLENL--EQQDLVCLDDLQAVIGNEE---------WELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHhhhh----------hHHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 5422111 11222222 2346999999998864321 12235555554444444 4556666
Q ss_pred ccccccc---ccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000973 528 NRVDAID---GALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 528 n~~~~ld---~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
..|..++ +.|.+..+++.++.++.|+.+++.+||+..+...+..+++++++.|+.+..| +.+.+..++..
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 6676654 7888833445788999999999999999998888889999999999998876 44444444443
No 137
>PLN03025 replication factor C subunit; Provisional
Probab=99.50 E-value=1.1e-13 Score=160.13 Aligned_cols=190 Identities=20% Similarity=0.204 Sum_probs=134.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++|+|+++++..|+.++.. ....++|||||||||||++|+++|+++...++...++.+++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 457899999999999999887653 1224799999999999999999999985444444566677665
Q ss_pred hHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
..+. ......+.. |.... .....||||||+|.|. ......|+..|+... ..+.+|.++|.
T Consensus 75 ~~~~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~--~~t~~il~~n~ 138 (319)
T PLN03025 75 DRGI--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYS--NTTRFALACNT 138 (319)
T ss_pred cccH--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhccc--CCceEEEEeCC
Confidence 4321 111111111 11111 1235699999999984 223455677776432 33456667788
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHH
Q 000973 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA 599 (1205)
...+.++|++ |+ ..+.|+.|+.++...+|+..+...+..++.+.+..|+..+.| |++.+++..
T Consensus 139 ~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 139 SSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred ccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 8888889988 77 579999999999999999999988888888888888877654 666655543
No 138
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.50 E-value=2e-13 Score=150.85 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=129.6
Q ss_pred cccccccccccccC-C-hhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEE
Q 000973 369 PLQVDESVSFDDIG-G-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~-G-l~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (1205)
++...+..+|++.+ | ...++..+..+... ....+++||||+|||||+|++++|+.+...+..+.|
T Consensus 12 ~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y 78 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGY 78 (235)
T ss_pred CCCCCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 34455778899854 4 45566666665432 223579999999999999999999998776766766
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCc-EEEEc
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ-VVLIG 525 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~-viVI~ 525 (1205)
+.++... . +. ..+++.... ..+||||||+.+.+.. .....|+..++.....++ .+|++
T Consensus 79 ~~~~~~~--~-~~-------~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~lf~l~n~~~e~g~~~li~t 137 (235)
T PRK08084 79 VPLDKRA--W-FV-------PEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAIFDLYNRILESGRTRLLIT 137 (235)
T ss_pred EEHHHHh--h-hh-------HHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHHHHHHHHHHHcCCCeEEEe
Confidence 6554321 1 11 111222111 2599999999885331 122223444443333444 45555
Q ss_pred ccccccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHH
Q 000973 526 ATNRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (1205)
Q Consensus 526 atn~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA 599 (1205)
+++.|.. +.+.|++ |+. .++.+.+|+.+++.+|++..+...+..+++++++.|+.++.| +.+.+..++...
T Consensus 138 s~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 138 GDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred CCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 5566655 5788988 875 688999999999999999878777889999999999998876 455555555543
No 139
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=9.9e-14 Score=166.75 Aligned_cols=179 Identities=18% Similarity=0.203 Sum_probs=130.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|..++... ..+.++|||||||||||++|+++|+.+....
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 4568999999999999998877541 3345689999999999999999999875421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.++++.-. +-..++.+...+.. ....||||||+|.|. ...+..|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~~~------gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASNR------GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcccC------CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHH
Confidence 11234445443211 11233444433321 234599999999883 334567888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.|+. ..+.+++|++|+.+..+++++++ || ..+.|..++.++...+++..+...+..++.+.+..|+..+.|
T Consensus 140 ~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 140 TLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 8874 34567777777778889999998 88 579999999999999999988888888899999999887654
No 140
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=6.6e-14 Score=171.55 Aligned_cols=216 Identities=23% Similarity=0.218 Sum_probs=150.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEE
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYM 448 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~ 448 (1205)
...+|++|+|++..+..|+..+.. ..+.++||+||||||||++|+++++.+.... ...+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 457899999999999999865432 3456899999999999999999987654321 1356788
Q ss_pred ecchhh-------HHHHHHHHHHH----------------HHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHH
Q 000973 449 RKGADV-------LSKWVGEAERQ----------------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (1205)
Q Consensus 449 i~~~~l-------~~~~~g~~e~~----------------l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~ 505 (1205)
++|... ....++..... ...++.. ....+||||||+.|. ...+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~-----------~~~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELH-----------PVQM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCC-----------HHHH
Confidence 887531 11111110000 0011222 234599999999984 3455
Q ss_pred HHHHHHhhCcc--------------------------cCCcEE-EEccccccccccccccCCCCccccccCCCCCchhhh
Q 000973 506 STLLALMDGLD--------------------------SRGQVV-LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARA 558 (1205)
Q Consensus 506 ~~Ll~~ld~~~--------------------------~~~~vi-VI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~ 558 (1205)
..|+..|+... ...++. |++||+.++.|++++++ || ..|.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 66666664310 011334 44556779999999998 87 57889999999999
Q ss_pred hhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhc
Q 000973 559 EILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (1205)
Q Consensus 559 ~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~ 637 (1205)
.|++..+++.+..++++.++.|+..+. +++++.++++.|+..+..+. ...|+.+|+..++.
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~----------------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG----------------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC----------------CcEEcHHHHHHHhC
Confidence 999999999888889998888877654 78999999999887665432 12488888888875
No 141
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1e-13 Score=167.68 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=140.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (1205)
...+|++|+|++.++..|+.++.. -..+..+||+||+|||||++|+++|+.+...
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 346899999999999999998764 1335678999999999999999999998542
Q ss_pred ------CCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 441 ------~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
+....++.+++++-. .-..++.++..+. .++..|+||||+|.|. ....+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHH
Confidence 111234444443211 1223444444332 2345699999999883 335667888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. .+.+.+|++|+.+..+.+.+++ |+ ..|.|..++.++....|...+.+.+..++.+.+..|+..+.| +.+
T Consensus 141 tLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88843 3566777778888888888887 78 679999999999999999999988889999998889888765 555
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 6666655444
No 142
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=1.8e-13 Score=164.16 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=139.1
Q ss_pred cccccccccc-CChhHHH--HHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 372 VDESVSFDDI-GGLSEYI--DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 372 ~~~~~~~~~i-~Gl~~~k--~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
..+..+|++. +|-.+.. ..+.++... + + ..++++||||+|||||+|++++|+.+........++.
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKN----P------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhC----c------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4578899995 4755432 233333221 1 1 1356999999999999999999999866544456667
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
+++.+++..+.......-..-|.......+.||+|||++.+.+.. .....|+..++.+...+..+||++..
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 778777766544322111122333333357799999999886432 12233445555444455667776666
Q ss_pred cccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHH
Q 000973 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a 603 (1205)
.|.. +.+.+.+ ||. .++.|.+|+.+.|.+|++..+...+..+++++++.||....| +.++|..++......+
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 6655 5567777 773 567899999999999999999888888999999999998876 5566666666554333
No 143
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=1e-13 Score=151.11 Aligned_cols=184 Identities=22% Similarity=0.195 Sum_probs=134.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhh-cCCeEEEEEecch
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKGA 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~~~ 452 (1205)
..-+|++++|++.++..|+..+.. ....++|||||||||||+.|+++|.++.. ......+...+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 456899999999999999887753 23358999999999999999999999864 2233334444544
Q ss_pred hhHHHHHH-HHHHHHHHHHHHH--hhcC----CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEc
Q 000973 453 DVLSKWVG-EAERQLKLLFEEA--QRNQ----PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (1205)
Q Consensus 453 ~l~~~~~g-~~e~~l~~lf~~a--~~~~----p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~ 525 (1205)
+..+..++ +.-.....+.... .... .-||+|||+|.| .......|...|+.. ...+++|.
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~--s~~trFiL 164 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDF--SRTTRFIL 164 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhcc--ccceEEEE
Confidence 44332221 1111111111111 1111 259999999988 456778899999953 45677888
Q ss_pred cccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 526 atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.||..+.|...+.+ |+ ..+.|+....+.....|+..+.+.++.++.+.+..|+..+.|
T Consensus 165 Icnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 165 ICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred EcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 89999999999988 88 458899888899999999999999999999999999987766
No 144
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=2.1e-13 Score=167.65 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=138.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-------------
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------- 441 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------- 441 (1205)
..+|++|+|++.++..|+.++.. + ..+..+||+||+|||||++|+++|+.+....
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 46899999999999999988764 1 2234579999999999999999999986521
Q ss_pred ------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000973 442 ------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 442 ------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
....|+.+++..- ..-..++.+...+. .+...|+||||+|.|. ....+.||..
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHH
Confidence 0112333443321 01123344433332 2345699999999883 4567789999
Q ss_pred hhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchh
Q 000973 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgad 591 (1205)
|+. ..+.+++|++|+.+..|.+.+++ || ..|.|..++.++....|...+...++..+...+..|+..+.| +.++
T Consensus 143 LEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~ 216 (647)
T PRK07994 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRD 216 (647)
T ss_pred HHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 984 44567777788888899999998 86 789999999999999999888777777888888888887776 4555
Q ss_pred HHHHhHHHH
Q 000973 592 LKALCTEAA 600 (1205)
Q Consensus 592 I~~L~~eA~ 600 (1205)
+.+++..+.
T Consensus 217 Al~lldqai 225 (647)
T PRK07994 217 ALSLTDQAI 225 (647)
T ss_pred HHHHHHHHH
Confidence 555655443
No 145
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.4e-13 Score=166.09 Aligned_cols=193 Identities=21% Similarity=0.198 Sum_probs=141.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|+.++... +.+..+||+||+|||||++|+++|+.+.....
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 4568999999999999999987641 34567999999999999999999998754311
Q ss_pred --------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 443 --------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
...++.+++..- .....++.++..+. .....||||||+|.|. ...++.||.
T Consensus 79 Cr~i~~g~~~DvlEidaAs~------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASN------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEecccc------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 112233332211 11234555555432 2334699999999873 345667888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. .+.+++|++|+.+..+...+++ || ..|.|..++.++...+|...+...+..++.+.+..|+..+.| +.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 88843 3567777788888888888887 88 678899999999999999999998888999988889888765 566
Q ss_pred hHHHHhHHHHH
Q 000973 591 DLKALCTEAAI 601 (1205)
Q Consensus 591 dI~~L~~eA~~ 601 (1205)
++.+++..++.
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 67777665543
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=4.6e-13 Score=162.35 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=138.5
Q ss_pred ccccccccc-CChhHH--HHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000973 373 DESVSFDDI-GGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 373 ~~~~~~~~i-~Gl~~~--k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
.+..+|+++ +|-.+. ...+..++.. .+ ...+.++|||++|||||+|+++||+.+........++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 367889985 455443 2334443322 11 123459999999999999999999998653223556677
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++.+|+..+...........|.... ...+||+||||+.+.++.. ....|+.+++.+...++.+||++...
T Consensus 351 taeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~---------tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES---------TQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH---------HHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 7888877766544333323344322 2357999999999874321 22345555555555555566644444
Q ss_pred cc---cccccccCCCCc--cccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHH
Q 000973 530 VD---AIDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 530 ~~---~ld~aL~r~gRf--~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a 603 (1205)
|. .+++.|++ || ..++.+..|+.+.|.+||+.++...++.++.++++.|+.+..+ +.++|..++......+
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 44 46788888 77 4567899999999999999999999999999999999998765 4566666665544333
No 147
>PRK08727 hypothetical protein; Validated
Probab=99.45 E-value=8e-13 Score=145.93 Aligned_cols=182 Identities=21% Similarity=0.268 Sum_probs=121.6
Q ss_pred ccccccccccccc-CChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000973 369 PLQVDESVSFDDI-GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 369 ~~~~~~~~~~~~i-~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
+++..+..+|++. +|..+....+..... + .....++|+||+|||||+|++++|+.+...+..+.|+
T Consensus 9 ~~~~~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 9 ALRYPSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred cCCCCCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4555677899994 555555544433211 1 1234599999999999999999999988777666655
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 448 ~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
.. .++.. .+..++... ....+|+||||+.+..... ....|+..++.....+.-+|+.+.
T Consensus 76 ~~--~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~---------~~~~lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 76 PL--QAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE---------DEVALFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred eH--HHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH---------HHHHHHHHHHHHHHcCCeEEEECC
Confidence 42 22221 222333333 2346999999998864321 122344444444334444555555
Q ss_pred cccccc---cccccCCCCc--cccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 528 NRVDAI---DGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 528 n~~~~l---d~aL~r~gRf--~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
..|..+ ++.|.+ || ..++.|+.|+.+++.+|++.++...+..++.++++.|+.++.|
T Consensus 135 ~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 135 QMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred CChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 566654 688888 86 5678999999999999999988777888999999999998764
No 148
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.5e-13 Score=158.45 Aligned_cols=192 Identities=20% Similarity=0.190 Sum_probs=135.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++.. + ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 346899999999999999888754 1 2345679999999999999999999885321
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.+++... ..-..++.++..+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk 141 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLK 141 (363)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHH
Confidence 0112333333210 112234445444332 234599999999883 234556888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. ...+.+|.+|+.++.+.+.+++ |+ ..+.|++++.++..+++...+...+..++.+.+..++..+.| +.+
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88743 3456667777777888888887 77 679999999999999999988888888888888888887765 455
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 149
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.1e-13 Score=164.13 Aligned_cols=192 Identities=17% Similarity=0.158 Sum_probs=140.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|+.++..- ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 3468999999999999999988541 2344689999999999999999999985421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.++++.- ..-..++.+.+.+. .+...|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHH
Confidence 1223455554321 11223444444432 2334699999999984 334667888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. ...+++|.+|+.+..+.+.+++ |+ ..++|..++.++....+...+...+..++.+.+..|+..+.| +.+
T Consensus 142 ~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88854 3457777777888888888888 77 678999999999999998888888888888888888888765 666
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 150
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.8e-13 Score=162.14 Aligned_cols=192 Identities=22% Similarity=0.258 Sum_probs=143.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (1205)
...+|++|+|++.+++.|+.++.. + +.+.++||+||+|||||++|+.+|+.+...
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 346899999999999999887654 1 445689999999999999999999976431
Q ss_pred ------CCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 441 ------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 441 ------~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
+....++.+++++-. +-..++.+++.+.. ....|+||||+|.|. ...++.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHH
Confidence 123345566654321 12335555554432 234599999999883 345677888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. ...+++|.+|+.+..|.+.+++ |+ ..+.|..++.++...++...+...+..++.+.+..|+..+.| +.+
T Consensus 139 ~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88853 4567777778888889999988 77 679999999999999999999998889999998888888865 556
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 213 ~alslLdqli 222 (491)
T PRK14964 213 NALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 151
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=4.2e-13 Score=161.91 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=142.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
..-+|++++|++.++..|+.++.. + ..+.++||+||+|||||++|+++|+.+.....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456899999999999999886643 1 34568999999999999999999999864211
Q ss_pred ------------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHH
Q 000973 443 ------------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (1205)
Q Consensus 443 ------------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~ 506 (1205)
...++.+++..- .+...++.+++.+.. ....|+||||+|.|. ...++
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~------~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASK------TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCC------CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHH
Confidence 112233332210 123345556655542 234599999999883 34466
Q ss_pred HHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 507 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.|+..|+. ....+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...+++..+...+..++.+.+..|+..+.|
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888874 34567777778888889999988 77 678999999999999999999988888888888889988776
Q ss_pred ccchhHHHHhHHHHH
Q 000973 587 YCGADLKALCTEAAI 601 (1205)
Q Consensus 587 ~sgadI~~L~~eA~~ 601 (1205)
+.+++.+++..++.
T Consensus 222 -slR~al~~Ldkai~ 235 (507)
T PRK06645 222 -SARDAVSILDQAAS 235 (507)
T ss_pred -CHHHHHHHHHHHHH
Confidence 66666666666543
No 152
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.44 E-value=1.3e-12 Score=154.13 Aligned_cols=230 Identities=23% Similarity=0.229 Sum_probs=147.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC----CeEEEEEe
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG----QKVSFYMR 449 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~----~~~~~~~i 449 (1205)
+....++++|.+..++.|..++...+. + ..+.+++|+||||||||++++++++.+.... ..+.++.+
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 455567899999999999888754211 1 3346799999999999999999998875322 22667777
Q ss_pred cchhh------HHHHHHH--------------HHHHHHHHHHHHh-hcCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 450 KGADV------LSKWVGE--------------AERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 450 ~~~~l------~~~~~g~--------------~e~~l~~lf~~a~-~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
+|... +...... ....+..++.... ...+.||+|||+|.|... ...++..|
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l 152 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQL 152 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhH
Confidence 76432 2111111 1222344444443 244679999999999722 12345556
Q ss_pred HHHhhCc-ccCCcEEEEccccccc---cccccccCCCCcc-ccccCCCCCchhhhhhhhccccc--cCCCCchhHHHHHh
Q 000973 509 LALMDGL-DSRGQVVLIGATNRVD---AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELA 581 (1205)
Q Consensus 509 l~~ld~~-~~~~~viVI~atn~~~---~ld~aL~r~gRf~-~~I~~~~P~~eer~~Il~~~l~~--~~~~~~~~~l~~LA 581 (1205)
+.+.+.. ....++.+|+++|.+. .+++.+.+ ||. ..|.|++++.+++.+|++..+.. ....++++++..++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 5552211 2235788899998875 46777776 674 57999999999999999988752 12235566655555
Q ss_pred hhhh---cccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000973 582 ASCV---GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 582 ~~t~---G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
..+. | ..+.+..+|..|+..|..+.. ..|+.+|+..|+..+
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~~----------------~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREGA----------------ERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHHHHHH
Confidence 4433 3 233444567777766655422 247888888777655
No 153
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.44 E-value=9e-13 Score=153.68 Aligned_cols=194 Identities=21% Similarity=0.214 Sum_probs=132.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++|+|++.+++.|..++.. ....++||+||||||||++|+++|+++........++.+++.+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 456799999999999999887654 1223799999999999999999999986544344566777765
Q ss_pred hHHHH-------------HHH-------HHHHHHHHHHHHhh-----cCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 454 VLSKW-------------VGE-------AERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 454 l~~~~-------------~g~-------~e~~l~~lf~~a~~-----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
+.... .+. ....++.+...... ..+.||||||+|.|.. .....|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHHHH
Confidence 53221 111 11223333333222 2245999999998841 223456
Q ss_pred HHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000973 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 509 l~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
+..|+.... .+.+|.+++.+..+.+.|++ |+ ..+.|.+|+.++...+++..+...+..++.+.+..|+..+.
T Consensus 146 ~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~--- 217 (337)
T PRK12402 146 RRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG--- 217 (337)
T ss_pred HHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---
Confidence 666664432 23444455555667777877 76 57899999999999999999988888888888888887763
Q ss_pred chhHHHHhHHHH
Q 000973 589 GADLKALCTEAA 600 (1205)
Q Consensus 589 gadI~~L~~eA~ 600 (1205)
.+++.++....
T Consensus 218 -gdlr~l~~~l~ 228 (337)
T PRK12402 218 -GDLRKAILTLQ 228 (337)
T ss_pred -CCHHHHHHHHH
Confidence 45666555443
No 154
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.43 E-value=4.6e-13 Score=160.17 Aligned_cols=181 Identities=27% Similarity=0.341 Sum_probs=124.4
Q ss_pred cccccccCChhHHHHH---hhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 375 SVSFDDIGGLSEYIDA---LKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~---L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+|++++|++..+.. |..++.. ....++||+||||||||++|+++|+.+. ..|+.+++
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~~~l~a 69 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATD-----APFEALSA 69 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEec
Confidence 4678999999998766 7776643 2344899999999999999999999875 44555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
.... ...++.++..+. .....||||||+|.|. ......|+..++ .+.+++|++|
T Consensus 70 ~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le----~~~iilI~at 127 (413)
T PRK13342 70 VTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVE----DGTITLIGAT 127 (413)
T ss_pred cccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhh----cCcEEEEEeC
Confidence 4221 122333444332 2356799999999884 233455666666 3567777665
Q ss_pred --cccccccccccCCCCccccccCCCCCchhhhhhhhcccccc--CC-CCchhHHHHHhhhhhcccchhHHHHhHHH
Q 000973 528 --NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--KQ-PPSRELKSELAASCVGYCGADLKALCTEA 599 (1205)
Q Consensus 528 --n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~--~~-~~~~~~l~~LA~~t~G~sgadI~~L~~eA 599 (1205)
|....++++|++ || ..+.|+.++.++...+|+..+... +. .++.+.+..|+..+.| ..+.+.+++..+
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334578999998 88 779999999999999998876542 23 6677777888877644 333444444443
No 155
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.43 E-value=6.5e-13 Score=145.87 Aligned_cols=199 Identities=20% Similarity=0.239 Sum_probs=132.5
Q ss_pred ccccccccccccC--ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000973 370 LQVDESVSFDDIG--GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 370 ~~~~~~~~~~~i~--Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
++..+..+|++++ +...++..|++++.. ..+.+++|+||+|||||++|+++++.+...+ ..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~--~~~~ 70 (226)
T TIGR03420 6 VGLPDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERG--KSAI 70 (226)
T ss_pred CCCCCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CcEE
Confidence 3444667788864 466677888776431 3457899999999999999999999986554 3456
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 448 ~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
.+++..+.... ..++.... ...+|||||+|.+.... .....|..+++.....+..+||+++
T Consensus 71 ~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~~iIits~ 131 (226)
T TIGR03420 71 YLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGGRLLIAGR 131 (226)
T ss_pred EEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCeEEEECC
Confidence 67776665322 12222222 23599999999885321 1123344444433233344555555
Q ss_pred ccccccc---ccccCCCCc--cccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHH
Q 000973 528 NRVDAID---GALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 528 n~~~~ld---~aL~r~gRf--~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
..+..++ +.|.+ || ...|.+++|+.+++..+++.++...+..++.+.+..|+.. -+-+.+++.+++..+...
T Consensus 132 ~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~ 208 (226)
T TIGR03420 132 AAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRA 208 (226)
T ss_pred CChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 4444432 55665 55 4679999999999999999888777788899999999886 444788888888876654
Q ss_pred HHH
Q 000973 603 AFR 605 (1205)
Q Consensus 603 a~r 605 (1205)
+..
T Consensus 209 ~~~ 211 (226)
T TIGR03420 209 SLA 211 (226)
T ss_pred HHH
Confidence 433
No 156
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.8e-13 Score=160.75 Aligned_cols=207 Identities=20% Similarity=0.274 Sum_probs=143.3
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec-chhhH---H
Q 000973 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK-GADVL---S 456 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~-~~~l~---~ 456 (1205)
=.|++.+|+.|.+++..-.... . -...-+||+||||+|||+|++.||+.+++...++.+--+. -+++- .
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~----~---~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTK----K---LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhc----c---CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 4799999999999876522111 1 1224689999999999999999999998654333321111 12222 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-------------CCcEEE
Q 000973 457 KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-------------RGQVVL 523 (1205)
Q Consensus 457 ~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~viV 523 (1205)
.|+|.....+-+-+..|....| |++|||||.+...-. ++ -.+.||..||.-.+ -.+|++
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r--GD-----PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR--GD-----PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC--CC-----hHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 5788888888888888888888 999999999964321 11 22346666663221 247999
Q ss_pred EccccccccccccccCCCCccccccCCCCCchhhhhhhhccccc----------cCCCCchhHHHHHhhhhhccc-----
Q 000973 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----------WKQPPSRELKSELAASCVGYC----- 588 (1205)
Q Consensus 524 I~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----------~~~~~~~~~l~~LA~~t~G~s----- 588 (1205)
|+|+|..+.|+..|+. |. .+|.++-++.+|..+|.+.|+=. -.+.++++.+..|......=+
T Consensus 470 iaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~L 546 (782)
T COG0466 470 IATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNL 546 (782)
T ss_pred EeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHH
Confidence 9999999999999998 88 78999999999999999877632 123455666665554432212
Q ss_pred chhHHHHhHHHHHHHHH
Q 000973 589 GADLKALCTEAAIRAFR 605 (1205)
Q Consensus 589 gadI~~L~~eA~~~a~r 605 (1205)
-++|..+|+.++..-+.
T Consensus 547 eR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 547 EREIAKICRKAAKKILL 563 (782)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 14566677776665554
No 157
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=7.3e-13 Score=155.85 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=128.4
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC--------------
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------- 442 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------- 442 (1205)
.|++|+|++.+++.|+.++..+..+ +..++...+..+||+||+|+|||++|+++|+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4889999999999999999875432 23334445678999999999999999999988744310
Q ss_pred ------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHh
Q 000973 443 ------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (1205)
Q Consensus 443 ------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~l 512 (1205)
.+.++...+.. -.-..++.+++.+.. ....|+||||+|.|. ....+.||..|
T Consensus 80 ~~~~hpD~~~i~~~~~~-------i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~L 141 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLS-------IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAV 141 (394)
T ss_pred hcCCCCCEEEecccccc-------CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHh
Confidence 11122111111 112345666665543 334699999999984 23446788888
Q ss_pred hCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhH
Q 000973 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (1205)
Q Consensus 513 d~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI 592 (1205)
+.. ..++++|.+|+.++.|.+.+++ |+ ..|.|++|+.++..++|.... + .+.+....++..+.|..+..+
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHHHHHHHHHHcCCCHHHHH
Confidence 853 3344455555558899999998 88 689999999999888876322 2 334555678888888776665
Q ss_pred HHHhH
Q 000973 593 KALCT 597 (1205)
Q Consensus 593 ~~L~~ 597 (1205)
.-+..
T Consensus 212 ~l~~~ 216 (394)
T PRK07940 212 RLATD 216 (394)
T ss_pred HHhcC
Confidence 55443
No 158
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.43 E-value=6.8e-13 Score=144.91 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=130.2
Q ss_pred ccccccccc-CChhH--HHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000973 373 DESVSFDDI-GGLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 373 ~~~~~~~~i-~Gl~~--~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
++..+|++. +|-.+ +...+..+...| + ...+.++||||+|+|||+|++|+++++........++.+
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 467899995 46433 344444443321 1 123468999999999999999999998765444566777
Q ss_pred cchhhHHHHHHHHHHH-HHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 450 KGADVLSKWVGEAERQ-LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~-l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++.+|...+....... +..+..... ...+|+||++|.+.+. ..+...|+.+++.+...++.+||++..
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK---------QRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH---------HHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc---------hHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 8888876655443322 222222222 3469999999998632 234566777777666677777777766
Q ss_pred cccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHH
Q 000973 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (1205)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA 599 (1205)
.|.. +++.|.+ ||. .++.+..|+.+.|..|++..+...+..+++++++.|+....+ +.++|..++...
T Consensus 140 ~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l 212 (219)
T PF00308_consen 140 PPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRL 212 (219)
T ss_dssp -TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred CCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 6665 4567777 774 478889999999999999999999999999999999988664 455555555543
No 159
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=6.3e-13 Score=168.43 Aligned_cols=195 Identities=19% Similarity=0.174 Sum_probs=136.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++.. + ..+..+||+||+|||||++|++||+.+.+..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 456899999999999999998754 1 2334589999999999999999999986421
Q ss_pred ---------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHh
Q 000973 442 ---------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (1205)
Q Consensus 442 ---------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~l 512 (1205)
....|+.+++.... .+.+.......++.........|+||||+|.|. ....+.||..|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaLLK~L 144 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNALLKIV 144 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHHHHHH
Confidence 11233444442211 122222222222222223445699999999984 34567789999
Q ss_pred hCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhH
Q 000973 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADL 592 (1205)
Q Consensus 513 d~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI 592 (1205)
+.. ...+++|++|+.++.|.+.|++ |+ .+|.|..++.++...+|...+...++.++.+.+..|+..+.| +.+++
T Consensus 145 EEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~A 218 (824)
T PRK07764 145 EEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDS 218 (824)
T ss_pred hCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 854 4567777777888888888988 77 678999999999999999998888888888888777777665 44555
Q ss_pred HHHhHHH
Q 000973 593 KALCTEA 599 (1205)
Q Consensus 593 ~~L~~eA 599 (1205)
.+++...
T Consensus 219 l~eLEKL 225 (824)
T PRK07764 219 LSVLDQL 225 (824)
T ss_pred HHHHHHH
Confidence 5555443
No 160
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=7.2e-13 Score=161.52 Aligned_cols=190 Identities=22% Similarity=0.244 Sum_probs=134.3
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
....+|++|+|++.++..|..++.... .| .+++++||+||||||||++|+++|++++ ..++.++++
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~-----~~~ielnas 73 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYG-----WEVIELNAS 73 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEccc
Confidence 356789999999999999999886421 11 3467899999999999999999999985 456666665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh------cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQR------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~------~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
+.... ..+..+...+.. ..+.||||||+|.|.+... ...+..|+..++. ....||++
T Consensus 74 d~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli 136 (482)
T PRK04195 74 DQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILT 136 (482)
T ss_pred ccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEe
Confidence 53321 112222221111 2467999999999864211 1234456666662 23345557
Q ss_pred ccccccccc-cccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHH
Q 000973 527 TNRVDAIDG-ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 527 tn~~~~ld~-aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~ 600 (1205)
+|.+..+.. .|++ | +..|.|+.|+..++..+|+..+...+..++.+++..|+..+. .|++.+++...
T Consensus 137 ~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq 204 (482)
T PRK04195 137 ANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQ 204 (482)
T ss_pred ccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHH
Confidence 787777776 5655 4 478999999999999999999988888889999999988765 47777766544
No 161
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1e-12 Score=160.94 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=137.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++.. | ..+..+||+||+|||||++|+++|+.+....
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 346899999999999999998764 1 2344579999999999999999999876321
Q ss_pred ---------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 442 ---------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 442 ---------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
....++.++++... -+ ..++.+.+.+. .....|+||||+|.|. ....+.|
T Consensus 76 C~~i~~~~~~~~dvieidaas~~--gv----d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NAL 138 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHG--GV----DDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNAL 138 (584)
T ss_pred HHHhhcccCCCceEEEecccccc--CH----HHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHH
Confidence 12334455543211 12 22333333222 2334599999999983 3466778
Q ss_pred HHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000973 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 509 l~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
|..|+. ....+++|++|+.+..|.+.+++ |+ ..|.|..++.++..++|...+...+..++.+.+..|+..+.| +
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 898884 34577888888888899999988 75 679999999999999999999888888888887777765544 4
Q ss_pred chhHHHHhHHHH
Q 000973 589 GADLKALCTEAA 600 (1205)
Q Consensus 589 gadI~~L~~eA~ 600 (1205)
.+++.+++..++
T Consensus 213 lR~aln~Ldql~ 224 (584)
T PRK14952 213 PRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 162
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.1e-12 Score=158.86 Aligned_cols=189 Identities=21% Similarity=0.223 Sum_probs=133.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++... ..+..+||+||||||||++|+++|+.+...+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3568999999999999999987641 2334569999999999999999999986421
Q ss_pred ------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000973 442 ------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 442 ------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
....++.+++.... .-..++.+...+. ...+.||||||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~~~------~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNN------SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 11224444443111 1223344333322 2345699999999773 3456678888
Q ss_pred hhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchh
Q 000973 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgad 591 (1205)
|+.. ...+++|.+++.+..+.+.+.+ |+ ..+.|..|+.++...+|+..+...+..++.+.+..|+..+.| ..+.
T Consensus 140 LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8743 3466777778888889999988 77 579999999999999999999888888888888888887765 3333
Q ss_pred HHHHhH
Q 000973 592 LKALCT 597 (1205)
Q Consensus 592 I~~L~~ 597 (1205)
+.+++.
T Consensus 214 aln~Le 219 (504)
T PRK14963 214 AESLLE 219 (504)
T ss_pred HHHHHH
Confidence 333343
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=99.41 E-value=7.6e-14 Score=158.19 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=102.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc------CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~------~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.++||+||||||||++|+++|+.+.. -+++.++...+++.| .|+++..+..+|..|. ++||||||+|.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~-~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~ 135 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY-IGHTAPKTKEVLKKAM---GGVLFIDEAYYLY 135 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH-hccchHHHHHHHHHcc---CCEEEEEccchhc
Confidence 46999999999999999999997522 257778877888777 6877778888888764 4799999999985
Q ss_pred Hh-----HHHHHHHHHHHHHHhcCCCCCeEEeccCCcC-Cc---cccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 778 EN-----AHEQLRAVLLTLLEELPSHLPILLLGSSSVP-LA---EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 778 ~~-----~~~~~~~~ll~lL~~~~~~~~v~vIattn~~-~~---~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.. .+..+...|+.+|+.-. ..++||++++.. ++ .++|.+..+|+ .+++|++|+.+++..|++.++..
T Consensus 136 ~~~~~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~~~~~~np~L~sR~~--~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 136 KPDNERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMDKFYESNPGLSSRIA--NHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred cCCCccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHHHHhcCHHHHHhCC--ceEEcCCcCHHHHHHHHHHHHHH
Confidence 32 34566677777776533 456777777632 01 12344455555 88999999999999999999976
No 164
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.41 E-value=2.8e-12 Score=156.44 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=135.2
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc----C-CeEEEEEe
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----G-QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~-~~~~~~~i 449 (1205)
....+.|+|+++.+..|..++..-+. +-.+...++|+|+||||||++++.++.++... . ..+.++.+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 34447899999999999988754221 11223335699999999999999999887431 1 23667888
Q ss_pred cchhhH------HHHH----------H-HHHHHHHHHHHHHhh--cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 450 KGADVL------SKWV----------G-EAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 450 ~~~~l~------~~~~----------g-~~e~~l~~lf~~a~~--~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
+|..+. .... | .+...+..+|..... ....||||||||.|... ...++..|+.
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR 894 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFD 894 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHH
Confidence 884322 1111 0 123455566665432 23569999999999743 2345556666
Q ss_pred HhhCcccCCcEEEEccccc---cccccccccCCCCccc-cccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 511 LMDGLDSRGQVVLIGATNR---VDAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~---~~~ld~aL~r~gRf~~-~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
+.. .....++|||++|. +..+++.+++ ||.. .|.|++++.+++.+||+..+......+++++++.+|+.+..
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 544 23467999999987 4457788877 6653 48899999999999999888765456788888888875553
Q ss_pred ccchhHHHHh
Q 000973 587 YCGADLKALC 596 (1205)
Q Consensus 587 ~sgadI~~L~ 596 (1205)
. .+|++.++
T Consensus 971 ~-SGDARKAL 979 (1164)
T PTZ00112 971 V-SGDIRKAL 979 (1164)
T ss_pred c-CCHHHHHH
Confidence 3 34555543
No 165
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.41 E-value=8.5e-14 Score=163.75 Aligned_cols=91 Identities=25% Similarity=0.452 Sum_probs=85.6
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000973 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.....++|..+|+...+|+||+||+.||||++|++||+++.|.++++|..|++|||.||.+||++ ++.|+.+|..|+
T Consensus 162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~---~s~v~~~a~~l~ 238 (371)
T COG5076 162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGP---DSSVYVDAKELE 238 (371)
T ss_pred ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCC---CcchhhhhHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999998 677999999999
Q ss_pred hhHhhhhhccChhH
Q 000973 992 DAVHGMLSQMDPAL 1005 (1205)
Q Consensus 992 ~~~~~~~~~~~~~~ 1005 (1205)
+.|...+..++...
T Consensus 239 ~~~~~~i~~~~~~~ 252 (371)
T COG5076 239 KYFLKLIEEIPEEM 252 (371)
T ss_pred HHHHHHHHhccccc
Confidence 99999999888753
No 166
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.40 E-value=2.5e-13 Score=152.73 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=97.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc------cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE------KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~------~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.++||+||||||||++|+++|+.+. ..+++.++.+.+++.| .|+++..+..+|..|. ++||||||||.|.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~ 118 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-IGHTAQKTREVIKKAL---GGVLFIDEAYSLA 118 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-ccchHHHHHHHHHhcc---CCEEEEechhhhc
Confidence 5799999999999999999998752 2356667777888776 7888889999998775 5799999999987
Q ss_pred Hh----HHHHHHHHHHHHHHhcCCCCCeEEeccCCcC----CccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 778 EN----AHEQLRAVLLTLLEELPSHLPILLLGSSSVP----LAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 778 ~~----~~~~~~~~ll~lL~~~~~~~~v~vIattn~~----~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.. .....+.+|+..|+.. ...++||++++.. +..+++.+..+|. .+++|+.++.+++..|++.++..
T Consensus 119 ~~~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~sRf~--~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 119 RGGEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRSRFP--ISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cCCccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHhccc--eEEEECCCCHHHHHHHHHHHHHH
Confidence 42 1233444444444433 2345555544321 1224555555554 67889999999999999988864
No 167
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.40 E-value=1.7e-12 Score=142.96 Aligned_cols=195 Identities=18% Similarity=0.225 Sum_probs=127.2
Q ss_pred cccccccccccccC-C-hhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEE
Q 000973 369 PLQVDESVSFDDIG-G-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~-G-l~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (1205)
++...+..+|++++ | ...++..++.+.. +.....+++|+||+|||||+||+++++.+...+. .+
T Consensus 8 ~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--~~ 73 (227)
T PRK08903 8 DLGPPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--NA 73 (227)
T ss_pred CCCCCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cE
Confidence 34445678899955 3 3455556655433 1234568999999999999999999998865554 34
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcE-EEEc
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIG 525 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-iVI~ 525 (1205)
+.+++..+... +. ......+|||||+|.+.+ .....|+..++.....+.. +|++
T Consensus 74 ~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~~~~~~~vl~~ 128 (227)
T PRK08903 74 RYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD-----------AQQIALFNLFNRVRAHGQGALLVA 128 (227)
T ss_pred EEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45555544321 11 122356999999998742 1223455555544444554 4444
Q ss_pred cccccc--cccccccCCCCc--cccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 526 ATNRVD--AIDGALRRPGRF--DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 526 atn~~~--~ld~aL~r~gRf--~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
++..+. .+.+.|.+ || ...+.+++|+.+++..++..++...+..++.+.++.|+....| +.+++.+++.....
T Consensus 129 ~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 129 GPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred CCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 443332 24466665 66 4689999999999999999888888888999999999986554 66777777776544
Q ss_pred HHHH
Q 000973 602 RAFR 605 (1205)
Q Consensus 602 ~a~r 605 (1205)
.+..
T Consensus 206 ~~~~ 209 (227)
T PRK08903 206 YSLE 209 (227)
T ss_pred HHHH
Confidence 4433
No 168
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.1e-12 Score=161.13 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=137.5
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-------------
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------- 441 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------- 441 (1205)
.-+|++|+|++.++..|+.++..- ..+..+||+||+|||||++|+++|+.+.+.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 468999999999999999987641 2345679999999999999999999986421
Q ss_pred -----------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHH
Q 000973 442 -----------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (1205)
Q Consensus 442 -----------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~ 506 (1205)
....++.+++..- ..-..++.+++.+.. +...|+||||+|.|. ....+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHHH
Confidence 1112333333221 112345555554432 224599999999984 33466
Q ss_pred HHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 507 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.|+..|+. ....+++|.+|+.+..+.+.+++ |+ ..|.|..++.++....|+..+.+.+..++.+.+..|+..+.|
T Consensus 143 aLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G 217 (618)
T PRK14951 143 AMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG 217 (618)
T ss_pred HHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888874 34567777777778888888888 77 789999999999999999998888888888888888887776
Q ss_pred ccchhHHHHhHHHH
Q 000973 587 YCGADLKALCTEAA 600 (1205)
Q Consensus 587 ~sgadI~~L~~eA~ 600 (1205)
+.+++.+++..+.
T Consensus 218 -slR~al~lLdq~i 230 (618)
T PRK14951 218 -SMRDALSLTDQAI 230 (618)
T ss_pred -CHHHHHHHHHHHH
Confidence 5555555554433
No 169
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.5e-12 Score=158.80 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=129.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|+.++.. + +.+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 456899999999999999998754 1 2345799999999999999999999986421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHH-hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhh
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEA-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a-~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld 513 (1205)
....++.+++..-. .+.... .+...+... ......||||||+|.|. ...++.|+..|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~~--~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~LE 144 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNR--GIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKTLE 144 (624)
T ss_pred HHHHhcCCCCceEEEeccccc--CHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHHhh
Confidence 11223444432111 111211 122222211 12335699999999883 345677888888
Q ss_pred CcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 514 ~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
. ....+++|++|+.+..+.+.|++ |+ ..|.|+.++.++...+|...+...+..++.+.+..|+..+.|
T Consensus 145 E--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 145 E--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred c--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4 33567888888888888888887 77 578999999999999999888887877888888888887654
No 170
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=3.1e-12 Score=152.55 Aligned_cols=231 Identities=20% Similarity=0.210 Sum_probs=151.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+....+.++|.++.++.|...+...+. + ..+.+++|+||||||||++++.+++.+......+.++.+++..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 445667799999999999887743111 1 3346799999999999999999999986554456677777643
Q ss_pred h------HHHHH----H--------HHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC
Q 000973 454 V------LSKWV----G--------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (1205)
Q Consensus 454 l------~~~~~----g--------~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~ 514 (1205)
. +.... + .....+..+...... ..+.||+|||+|.|.... ...++..|+.+++.
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEE 168 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhc
Confidence 2 11111 1 112223333333332 346799999999986111 12456667776664
Q ss_pred cccCCcEEEEccccccc---cccccccCCCCcc-ccccCCCCCchhhhhhhhcccccc--CCCCchhHHHHHhhhhhccc
Q 000973 515 LDSRGQVVLIGATNRVD---AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKW--KQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 515 ~~~~~~viVI~atn~~~---~ld~aL~r~gRf~-~~I~~~~P~~eer~~Il~~~l~~~--~~~~~~~~l~~LA~~t~G~s 588 (1205)
... .++.||+++|..+ .+++.+.+ ||. ..|.|++++.++..+||+..+..- ...+++++++.++..+.+.+
T Consensus 169 ~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 432 3688888887754 36666665 553 568999999999999999877532 23467777888888876543
Q ss_pred c--hhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000973 589 G--ADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 589 g--adI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
| +.+-.+|..|+..|..+.. ..|+.+|+..|+..+
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~----------------~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGS----------------RKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHH
Confidence 3 2334667777666655421 247888888887765
No 171
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.5e-12 Score=160.37 Aligned_cols=192 Identities=20% Similarity=0.236 Sum_probs=139.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|+..+... ..+..+||+||+|||||++|+.+|+.+....
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3568999999999999999987641 3345689999999999999999999875321
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.++++. +.+-..++.+...+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 112334444321 1223345555555442 334699999999884 335667888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. ...+++|.+|+.+..|.+.+++ |+ ..+.|..|+.++...++...+...+..++.+.+..|+..+.| +.+
T Consensus 142 tLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88843 4567777777788899999988 77 568899999999999999999888888888888888887765 555
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..+.
T Consensus 216 ~al~~Ldq~~ 225 (559)
T PRK05563 216 DALSILDQAI 225 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 172
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.8e-13 Score=155.95 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=143.9
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE-ecchhhH---
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM-RKGADVL--- 455 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~-i~~~~l~--- 455 (1205)
|=.|++++|+.|.|++..-.. .|-...+-+||+||||+|||++++.||..+++...++.+-- .+-+++-
T Consensus 412 DHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 458999999999998765211 12233457899999999999999999999976533222111 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-------------CCcEE
Q 000973 456 SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-------------RGQVV 522 (1205)
Q Consensus 456 ~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-------------~~~vi 522 (1205)
..|+|.....+-+.+..+....| +++|||||.|.. +..++. .+.||.+||.-.+ -.+|+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP-----asALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDP-----ASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh-----HHHHHHhcChhhccchhhhccccccchhheE
Confidence 25788888888888899888888 999999999972 222221 2346666653221 24799
Q ss_pred EEccccccccccccccCCCCccccccCCCCCchhhhhhhhcccccc----------CCCCchhHHHHHhhhhhccc----
Q 000973 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----------KQPPSRELKSELAASCVGYC---- 588 (1205)
Q Consensus 523 VI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----------~~~~~~~~l~~LA~~t~G~s---- 588 (1205)
+|+|+|..+.|++.|+. |+ .+|.++-+..+|...|.+.|+-.. .+.++++.+..|......-+
T Consensus 557 FicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred EEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999998 88 789999999999999998877431 22344444444433321111
Q ss_pred -chhHHHHhHHHHHHHHHHh
Q 000973 589 -GADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 589 -gadI~~L~~eA~~~a~rr~ 607 (1205)
-..|..+|+.+++..+...
T Consensus 634 Lqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 634 LQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 2357777888777766654
No 173
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.9e-12 Score=157.21 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=134.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|..++.. + ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 346899999999999999888754 1 2344589999999999999999999875311
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.+++..-. | -..++.++..+. .+...|+||||+|.|. ....+.||.
T Consensus 79 C~~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK 141 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLK 141 (546)
T ss_pred HHHHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHH
Confidence 01123333332111 1 112333333332 2335699999999883 346677888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. .+.+++|++|+.+..+.+.+++ |+ ..++|..++.++...+|...+...+..++...+..|+..+.| +.+
T Consensus 142 ~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88843 4566677777777888888888 77 789999999999999999888888888888888888877754 445
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 174
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.39 E-value=6.3e-14 Score=183.32 Aligned_cols=95 Identities=28% Similarity=0.508 Sum_probs=90.5
Q ss_pred HHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcc
Q 000973 902 CLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGT 981 (1205)
Q Consensus 902 ~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s 981 (1205)
+|..||..+..|+.+|+|..||++..+|+||+|||+||||+||+.|+..|.|.++.+|..||.|||.||.+||.+ +
T Consensus 1305 ~~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s--- 1380 (1404)
T KOG1245|consen 1305 TCEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-S--- 1380 (1404)
T ss_pred hHHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-h---
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred eeeechhhhhhhHhhhhhc
Q 000973 982 RIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 982 ~i~~~A~~l~~~~~~~~~~ 1000 (1205)
.|..+...|..+|++.|..
T Consensus 1381 ~i~~ag~~l~~ff~~~~~~ 1399 (1404)
T KOG1245|consen 1381 EIGRAGTCLRRFFHKRWRK 1399 (1404)
T ss_pred hhhhhcchHHHHHHHHHHh
Confidence 5999999999999987653
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=2.8e-12 Score=153.63 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=134.5
Q ss_pred cccccccccc-CChhHHH--HHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 372 VDESVSFDDI-GGLSEYI--DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 372 ~~~~~~~~~i-~Gl~~~k--~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
.++..+|++. +|-.+.. ..+.++...+ ...+-...++++||||+|+|||+|++++|+.+...+.. ++.
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~-------~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~--v~y 174 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVS-------EQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGK--ILY 174 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhcc-------ccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCC--EEE
Confidence 4578899994 4655543 3444443221 00011233579999999999999999999998765543 455
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++...+...+...........|.... ....||+||||+.+.+.. .....|+..++.+...+..+||+++.
T Consensus 175 i~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 175 VRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred eeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 66666655444332221122344332 345699999999886432 12233444444433345566666665
Q ss_pred cccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHH
Q 000973 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~ 600 (1205)
.|.. +++.|++ ||. ..+.+.+|+.+++..||+..+...+..++.++++.|+....+ +.++|..++...+
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 5544 6788888 885 678889999999999999999988889999999999987765 3445555544443
No 176
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.38 E-value=9.1e-14 Score=132.36 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=71.6
Q ss_pred cccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhhhH
Q 000973 915 RFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRDAV 994 (1205)
Q Consensus 915 ~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~~~ 994 (1205)
.+.+|...+. -.|+|+.+|++||||.+|++||++|.|.++++|..||.|||.||++||.+ +|.||.+|..|+..|
T Consensus 26 ~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~---~S~iy~dA~eLq~~f 100 (110)
T cd05526 26 YSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRT---DSEIYEDAVELQQFF 100 (110)
T ss_pred chHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcc---cCHHHHHHHHHHHHH
Confidence 3456766555 45778899999999999999999999999999999999999999999999 788999999999999
Q ss_pred hhhhhc
Q 000973 995 HGMLSQ 1000 (1205)
Q Consensus 995 ~~~~~~ 1000 (1205)
...-.+
T Consensus 101 ~~~rd~ 106 (110)
T cd05526 101 IKIRDE 106 (110)
T ss_pred HHHHHH
Confidence 876543
No 177
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.5e-12 Score=159.23 Aligned_cols=191 Identities=21% Similarity=0.208 Sum_probs=136.6
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC------------
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ------------ 442 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~------------ 442 (1205)
..+|++|+|++.++..|..++... ..+..+||+||+|||||++|+++|+.+.....
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 468999999999999999887641 23445799999999999999999999854210
Q ss_pred -------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000973 443 -------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 443 -------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
...++.+++.. ......++.++..+.. ....|+||||+|.|. ....+.||..
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 11223333221 0122345555555432 234599999999884 3456678888
Q ss_pred hhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchh
Q 000973 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgad 591 (1205)
|+. ..+.+++|++|+.+..+.+.+++ |+ ..+.|..++.++....+...+...+..++...+..|+..+.| +.++
T Consensus 143 LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~ 216 (527)
T PRK14969 143 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRD 216 (527)
T ss_pred HhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34567777777778888878887 77 789999999999999998888877778888888888877655 4556
Q ss_pred HHHHhHHHH
Q 000973 592 LKALCTEAA 600 (1205)
Q Consensus 592 I~~L~~eA~ 600 (1205)
+.+++..++
T Consensus 217 al~lldqai 225 (527)
T PRK14969 217 ALSLLDQAI 225 (527)
T ss_pred HHHHHHHHH
Confidence 666665554
No 178
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=2.7e-12 Score=155.67 Aligned_cols=190 Identities=20% Similarity=0.216 Sum_probs=134.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
.+.+|++|+|++.+++.|..++.. + ..+..+||+||+|||||++|+++|+.+.+...
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 456899999999999999887643 1 33467999999999999999999999854321
Q ss_pred --------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 443 --------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
...++.++++.. .+-..++.+...+.. ....|++|||+|.|. ....+.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 112333333221 111234444443332 224599999999883 234567888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+. ....+++|++|+.+..|.+.+++ |+ ..+.|..++.++...+|...+...+..++.+.+..++..+.| +.+
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8884 34567777788888899999988 87 579999999999999999888887777888888888877765 344
Q ss_pred hHHHHhHH
Q 000973 591 DLKALCTE 598 (1205)
Q Consensus 591 dI~~L~~e 598 (1205)
++.+++..
T Consensus 216 ~AlnlLek 223 (605)
T PRK05896 216 DGLSILDQ 223 (605)
T ss_pred HHHHHHHH
Confidence 44444443
No 179
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=8.4e-12 Score=137.87 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=131.2
Q ss_pred cccccccccccccC-ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000973 369 PLQVDESVSFDDIG-GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~-Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
++...+..+|++.+ |.. .....++..+.. ..+--..++++||||+|||||+|++++|+++...+..+.
T Consensus 9 ~~~~~~~~tfdnF~~~~~---~~a~~~~~~~~~------~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~-- 77 (234)
T PRK05642 9 GVRLRDDATFANYYPGAN---AAALGYVERLCE------ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAV-- 77 (234)
T ss_pred CCCCCCcccccccCcCCh---HHHHHHHHHHhh------ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE--
Confidence 45566788999964 432 222222221110 001012367899999999999999999998865554444
Q ss_pred EecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 448 MRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 448 ~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
.++..++.... ..+++.... ..+|+|||++.+.+.. .....|+.+++.+...+..+||+++
T Consensus 78 y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~---------~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 78 YLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA---------DWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred EeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh---------HHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 45555554321 122222222 2499999999885432 1233466666666666777888887
Q ss_pred ccccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHH
Q 000973 528 NRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 528 n~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
..|.. +.+.|++ ||. .++.+..|+.+++..|++..+...+..+++++++.|+.+..+ +.+.+..++......
T Consensus 139 ~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~ 215 (234)
T PRK05642 139 KSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQA 215 (234)
T ss_pred CCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66654 3688888 874 567788999999999999777777788899999999988776 555566655544433
Q ss_pred H
Q 000973 603 A 603 (1205)
Q Consensus 603 a 603 (1205)
+
T Consensus 216 ~ 216 (234)
T PRK05642 216 S 216 (234)
T ss_pred H
Confidence 3
No 180
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=3e-12 Score=160.53 Aligned_cols=182 Identities=23% Similarity=0.312 Sum_probs=123.6
Q ss_pred cccccccCChhHHHH---HhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 375 SVSFDDIGGLSEYID---ALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~---~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+|++++|++.++. .|+.++.. ....++|||||||||||++|+++|+.+. ..|+.+++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~lna 85 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLNA 85 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeehh
Confidence 468899999999885 45555432 2234799999999999999999999874 44555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-----hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a-----~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
.... +. .++.++..+ ......||||||||.|. ......|+..++ .+.+++|++
T Consensus 86 ~~~~---i~----dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 86 VLAG---VK----DLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVE----NGTITLIGA 143 (725)
T ss_pred hhhh---hH----HHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhc----CceEEEEEe
Confidence 3211 11 122222222 11345699999999884 223445666655 356777776
Q ss_pred cc--ccccccccccCCCCccccccCCCCCchhhhhhhhcccc-------ccCCCCchhHHHHHhhhhhcccchhHHHHhH
Q 000973 527 TN--RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-------KWKQPPSRELKSELAASCVGYCGADLKALCT 597 (1205)
Q Consensus 527 tn--~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~-------~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~ 597 (1205)
|+ ....+++++++ |+ ..|.|++++.+++..|++..+. .....++++.++.|+..+.| ..+.+.+++.
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le 219 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALE 219 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 64 33468899988 75 5799999999999999998776 34567888888999887744 3445555555
Q ss_pred HHH
Q 000973 598 EAA 600 (1205)
Q Consensus 598 eA~ 600 (1205)
.++
T Consensus 220 ~a~ 222 (725)
T PRK13341 220 LAV 222 (725)
T ss_pred HHH
Confidence 444
No 181
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.36 E-value=3e-12 Score=151.38 Aligned_cols=222 Identities=21% Similarity=0.258 Sum_probs=147.4
Q ss_pred cccc-cCChhHHHHHhhhhhccccccccccccc-----ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000973 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASY-----HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 377 ~~~~-i~Gl~~~k~~L~e~v~~pl~~~~~~~~~-----g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.+++ |+|++.+++.|..++..+... +.... ...+..++||+||||||||++|+++|..++ ++|+.++
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r--~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id 140 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKR--LRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIAD 140 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHh--hhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecc
Confidence 4444 899999999998776443211 11100 112457899999999999999999999884 6778888
Q ss_pred chhhH-HHHHHHH-HHHHHHHHHHH----hhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcc-----
Q 000973 451 GADVL-SKWVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLD----- 516 (1205)
Q Consensus 451 ~~~l~-~~~~g~~-e~~l~~lf~~a----~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~----- 516 (1205)
+..+. ..|+|.. +..+..++..+ ....++||||||||.+...+.+. .+.....++..||.+|++..
T Consensus 141 ~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 141 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 77665 3566653 33344444332 23457899999999998653211 11122357888999998531
Q ss_pred ------cCCcEEEEccccccc----------------------------------------------------ccccccc
Q 000973 517 ------SRGQVVLIGATNRVD----------------------------------------------------AIDGALR 538 (1205)
Q Consensus 517 ------~~~~viVI~atn~~~----------------------------------------------------~ld~aL~ 538 (1205)
....+++|.|+|... .+.|+|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 012345566555411 0234444
Q ss_pred CCCCccccccCCCCCchhhhhhhhc----ccc---------ccCCCCchhHHHHHhhh--hhcccchhHHHHhHHHHHHH
Q 000973 539 RPGRFDREFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 539 r~gRf~~~I~~~~P~~eer~~Il~~----~l~---------~~~~~~~~~~l~~LA~~--t~G~sgadI~~L~~eA~~~a 603 (1205)
. |++.++.|.+.+.+++..|+.. .++ +..+.+++++++.|+.. ..++-.+.|+.++.......
T Consensus 301 g--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 301 G--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred C--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 4 9999999999999999999962 222 23345778888889885 45667788999988888777
Q ss_pred HHHh
Q 000973 604 FREK 607 (1205)
Q Consensus 604 ~rr~ 607 (1205)
+.+.
T Consensus 379 ~~~~ 382 (412)
T PRK05342 379 MFEL 382 (412)
T ss_pred HHhc
Confidence 7654
No 182
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=3e-12 Score=158.10 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=136.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|+.++... ..+..+||+||+|||||++|+++|+.+.....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4568999999999999999987641 33456899999999999999999998754221
Q ss_pred -----eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhh
Q 000973 443 -----KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (1205)
Q Consensus 443 -----~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld 513 (1205)
...++.++++. ..+...++.+.+.+.. +...|+||||+|.|. ...++.||..|+
T Consensus 81 ~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLE 143 (725)
T PRK07133 81 ENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLE 143 (725)
T ss_pred HhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhh
Confidence 01112222210 0113345556555543 335699999999884 235677888888
Q ss_pred CcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHH
Q 000973 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLK 593 (1205)
Q Consensus 514 ~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~ 593 (1205)
. ....+++|++|+.++.|.+.+++ || ..+.|..++.++...+|...+...+...+.+.+..||..+.| +.+++.
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 34567777788888899999988 88 579999999999999999888887777888777778877665 334444
Q ss_pred HHhHHH
Q 000973 594 ALCTEA 599 (1205)
Q Consensus 594 ~L~~eA 599 (1205)
+++..+
T Consensus 218 slLekl 223 (725)
T PRK07133 218 SIAEQV 223 (725)
T ss_pred HHHHHH
Confidence 444443
No 183
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.35 E-value=2.1e-12 Score=149.35 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=85.2
Q ss_pred CCceEEEeccCCcccccchhh-hHHHHHHHHHHHHHhhCcc--------cCCcEEEEcccc----ccccccccccCCCCc
Q 000973 477 QPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLD--------SRGQVVLIGATN----RVDAIDGALRRPGRF 543 (1205)
Q Consensus 477 ~p~VL~IDEid~L~~~r~~~~-~~~~~~v~~~Ll~~ld~~~--------~~~~viVI~atn----~~~~ld~aL~r~gRf 543 (1205)
+..||||||||.|+....+.+ +-...-++..||..+++.. ...++++|++.- .|..|-|.|.- ||
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RF 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--cc
Confidence 345999999999996653222 2334558889999998732 235778887653 35556677754 99
Q ss_pred cccccCCCCCchhhhhhhh----ccc-------cc--cCCCCchhHHHHHhhhhh-------cccchhHHHHhHHHHHHH
Q 000973 544 DREFNFPLPGCEARAEILD----IHT-------RK--WKQPPSRELKSELAASCV-------GYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 544 ~~~I~~~~P~~eer~~Il~----~~l-------~~--~~~~~~~~~l~~LA~~t~-------G~sgadI~~L~~eA~~~a 603 (1205)
...+.+..++.++...||. .++ .. ..+.++++.+..||..+. +.-.+-|..++.......
T Consensus 325 Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~ 404 (441)
T TIGR00390 325 PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDI 404 (441)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999993 122 22 223456777777777653 444556666666655554
Q ss_pred HHH
Q 000973 604 FRE 606 (1205)
Q Consensus 604 ~rr 606 (1205)
...
T Consensus 405 ~fe 407 (441)
T TIGR00390 405 SFE 407 (441)
T ss_pred Hhc
Confidence 443
No 184
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.1e-12 Score=158.17 Aligned_cols=190 Identities=20% Similarity=0.204 Sum_probs=138.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|+.++.. | ..+..+|||||+|||||++|+++|+.+....
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 346899999999999999988754 1 3345689999999999999999999985421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.+++.... +-..++.+...+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s~~------~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNT------GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccCcc------CHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHH
Confidence 12234444443211 12234445444432 224599999999884 345677888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+. ....+++|.+|+.+..|.+.+++ |+ ..|.|..++.++....+...+...+..++.+.+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34567888888888999999988 77 679999999999999999888888888888988888888776 344
Q ss_pred hHHHHhHH
Q 000973 591 DLKALCTE 598 (1205)
Q Consensus 591 dI~~L~~e 598 (1205)
++.+++..
T Consensus 216 ~al~~Ldq 223 (576)
T PRK14965 216 DSLSTLDQ 223 (576)
T ss_pred HHHHHHHH
Confidence 44444443
No 185
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=4.3e-12 Score=155.68 Aligned_cols=192 Identities=22% Similarity=0.273 Sum_probs=137.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|+.++.. + ..+..+|||||+|+|||++|+++|+.+....
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 346899999999999999998754 1 2345699999999999999999999986421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.+++..- ..-..++.+.+.+. .....|+||||+|.|. ...++.|+.
T Consensus 79 C~~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK 141 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLK 141 (563)
T ss_pred HHHHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHH
Confidence 1122333333210 01123333433322 2345699999999883 345677888
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+. ....+++|.+|+.+..|.++|++ |+ ..+.|..++.++...+|...+...+..++.+.+..|+..+.| +.+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34567777777778889999988 87 468999999999999999888888888889988888887766 555
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 216 ~alslLdkli 225 (563)
T PRK06647 216 DAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 186
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.34 E-value=4.3e-13 Score=152.15 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=102.7
Q ss_pred cceeeeecCCCCCCCccchhhhhhccc------CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhh
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~------~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l 776 (1205)
..++||+||||||||++|+++|+.+.. -+|+.++.++++..| .|.++..+..+|..|. ++|||||||+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~-~g~~~~~~~~~~~~a~---~gvL~iDEi~~L 133 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQY-IGHTAPKTKEILKRAM---GGVLFIDEAYYL 133 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhh-cccchHHHHHHHHHcc---CcEEEEechhhh
Confidence 347999999999999999999987632 267888888888776 6888888888888764 489999999988
Q ss_pred HH-----hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcC-Ccc---ccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 777 WE-----NAHEQLRAVLLTLLEELPSHLPILLLGSSSVP-LAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 777 ~~-----~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~-~~~---Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.. ..+..+.+.|+.+|+.- ...++||++++.. ++. +++.+..+|. ..++|++++.+++..|++.++.
T Consensus 134 ~~~~~~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~~~~~np~L~sR~~--~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 134 YRPDNERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDSFFESNPGFSSRVA--HHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred ccCCCccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhhCHHHHhhCC--cEEEeCCcCHHHHHHHHHHHHH
Confidence 52 13455666777777643 3466777776642 121 2444444554 7889999999999999999997
Q ss_pred H
Q 000973 848 A 848 (1205)
Q Consensus 848 ~ 848 (1205)
.
T Consensus 210 ~ 210 (284)
T TIGR02880 210 E 210 (284)
T ss_pred H
Confidence 6
No 187
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.34 E-value=2.3e-12 Score=149.11 Aligned_cols=218 Identities=21% Similarity=0.242 Sum_probs=144.8
Q ss_pred cCChhHHHHHhhhhhccccccccccccccc-CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-HH
Q 000973 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHI-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-KW 458 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-~~ 458 (1205)
|+|++++|..|..++....+...+...+.. ..+.++||+||||||||++|++||+.++ ++|+.+++..+.. .|
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~-----~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGY 91 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC-----ChheeecchhhccCCc
Confidence 899999999998887543222222111110 1258999999999999999999999985 6777777766663 46
Q ss_pred HH-HHHHHHHHHHHHHh---------------------------------------------------------------
Q 000973 459 VG-EAERQLKLLFEEAQ--------------------------------------------------------------- 474 (1205)
Q Consensus 459 ~g-~~e~~l~~lf~~a~--------------------------------------------------------------- 474 (1205)
+| ..+..++.+|..|.
T Consensus 92 vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 171 (443)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDK 171 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCc
Confidence 66 34444555544440
Q ss_pred ---------------------------------------------------------------------------hcCCc
Q 000973 475 ---------------------------------------------------------------------------RNQPS 479 (1205)
Q Consensus 475 ---------------------------------------------------------------------------~~~p~ 479 (1205)
.....
T Consensus 172 ~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G 251 (443)
T PRK05201 172 EIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG 251 (443)
T ss_pred EEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Confidence 01345
Q ss_pred eEEEeccCCcccccch-hhhHHHHHHHHHHHHHhhCcc--------cCCcEEEEcccc----ccccccccccCCCCcccc
Q 000973 480 IIFFDEIDGLAPVRSS-KQEQIHNSIVSTLLALMDGLD--------SRGQVVLIGATN----RVDAIDGALRRPGRFDRE 546 (1205)
Q Consensus 480 VL~IDEid~L~~~r~~-~~~~~~~~v~~~Ll~~ld~~~--------~~~~viVI~atn----~~~~ld~aL~r~gRf~~~ 546 (1205)
||||||||.|+...++ +.+-...-++..||..+++.. ...++++|++.- .|..|-|.|.- ||..+
T Consensus 252 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 329 (443)
T PRK05201 252 IVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIR 329 (443)
T ss_pred EEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 9999999999976432 222334568889999998732 246778887653 35556677765 99999
Q ss_pred ccCCCCCchhhhhhhhc----cccc---------cCCCCchhHHHHHhhhhh-------cccchhHHHHhHHHHHHHHH
Q 000973 547 FNFPLPGCEARAEILDI----HTRK---------WKQPPSRELKSELAASCV-------GYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 547 I~~~~P~~eer~~Il~~----~l~~---------~~~~~~~~~l~~LA~~t~-------G~sgadI~~L~~eA~~~a~r 605 (1205)
+.+..++.++...||.. ++++ ..+.++++.+..||..+. +.-.+-|..++.........
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~F 408 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISF 408 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhc
Confidence 99999999999999932 2221 233456777777777654 33445566666655544443
No 188
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=4.4e-12 Score=149.06 Aligned_cols=190 Identities=23% Similarity=0.256 Sum_probs=133.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.+++.|.+++.. | ..+..+||+||||+|||++|+++|+.+.....
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456899999999999999987754 1 33457899999999999999999998753210
Q ss_pred --------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 443 --------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
...++.+++... .....++.++..+.. ....||+|||+|.+. ....+.|+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHH
Confidence 123344443211 112234555555432 224599999999883 234566788
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.++.. ...+++|.+|+.+..+.+++++ |+ ..+.|++|+.++...++...+...+..++.+.+..|+..+.| +.+
T Consensus 140 ~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 88743 3466777777888888888888 77 578999999999999999999888888888888888877655 334
Q ss_pred hHHHHhHH
Q 000973 591 DLKALCTE 598 (1205)
Q Consensus 591 dI~~L~~e 598 (1205)
.+.+.+..
T Consensus 214 ~a~~~lek 221 (355)
T TIGR02397 214 DALSLLDQ 221 (355)
T ss_pred HHHHHHHH
Confidence 44444433
No 189
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=5.6e-12 Score=151.54 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=128.1
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-------------
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------- 441 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------- 441 (1205)
..+|++|+|++.++..|+.++.. + ..+..+|||||+|+|||++|+++|+.+....
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46899999999999999988754 1 3346689999999999999999999875421
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~ 514 (1205)
....++.+++....+ +.+.......+..........||||||+|.|. ....+.|+..|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk~lEe 147 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLKTLEE 147 (451)
T ss_pred HHHHhcCCCCceEEeeccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHHHhhc
Confidence 112344444432110 11111111111111122345699999999884 2346678888885
Q ss_pred cccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 515 LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 515 ~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
. .+.+++|++|+.+..|.+.+++ |+ ..+.|..++.++...++...+.+.+..++.+.+..|+..+.|
T Consensus 148 p--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 148 P--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred C--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3 4466777777888888899988 77 579999999999999999888887878888888888877654
No 190
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=6.5e-12 Score=151.90 Aligned_cols=191 Identities=22% Similarity=0.231 Sum_probs=132.0
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|+.++.. + ..+..+|||||+|+|||++|+++|+.+.....
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 346899999999999999988754 1 23445789999999999999999998753110
Q ss_pred --------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 443 --------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 443 --------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
...++.++++.- ..-..++.+...+.. ....|+||||+|.|. ....+.|+.
T Consensus 79 c~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk 141 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLK 141 (486)
T ss_pred HHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHH
Confidence 011222322110 111223444443332 335699999999884 234566788
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. ...+++|.+|+.++.+.+++.+ |+ ..|.|.+++.++...+|...+...+...+.+.+..|+..+.| +.+
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88743 3456666667777788888887 77 479999999999999999999988888888888888877665 344
Q ss_pred hHHHHhHHH
Q 000973 591 DLKALCTEA 599 (1205)
Q Consensus 591 dI~~L~~eA 599 (1205)
++.+++..+
T Consensus 216 ~al~~Ldkl 224 (486)
T PRK14953 216 DAASLLDQA 224 (486)
T ss_pred HHHHHHHHH
Confidence 444555444
No 191
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.32 E-value=7.9e-12 Score=144.58 Aligned_cols=186 Identities=20% Similarity=0.246 Sum_probs=122.9
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
....+|++|+|++.++..|+.++.. | ..++.+||+||||+|||++|+++|+.++ ..++.+++.
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~ 77 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGS 77 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccC
Confidence 3457899999999999999988753 1 2344566699999999999999999874 345555655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh-hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~-~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
. .. +......+..+..... ...+.||||||+|.+.. ......|...++.. ..++.+|+++|.+.
T Consensus 78 ~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 78 D--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNKN 142 (316)
T ss_pred c--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCChh
Confidence 4 11 2222222222222211 13467999999998831 11233445556643 34567788889888
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhcccc-------ccCCCCchhHHHHHhhhhhcccchhHHHHhH
Q 000973 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR-------KWKQPPSRELKSELAASCVGYCGADLKALCT 597 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~-------~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~ 597 (1205)
.+.+++++ || ..+.|+.|+.+++..|++.++. ..+..++.+.+..++....| +++.++.
T Consensus 143 ~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~ 208 (316)
T PHA02544 143 GIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTIN 208 (316)
T ss_pred hchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHH
Confidence 89999998 88 5789999999999877664332 34556676777777765443 4554443
No 192
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.32 E-value=8.2e-12 Score=144.40 Aligned_cols=182 Identities=25% Similarity=0.241 Sum_probs=125.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++++|++++++.|..++.. ....++||+||||||||++++++++.+...+....++.+++++
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 457899999999999999988753 1123689999999999999999999986555445566665443
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh--cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~--~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
.... ......+..+...... ..+.||||||+|.|.. .....|+..++.... .+.+|.++|.+.
T Consensus 79 ~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~lIl~~~~~~ 143 (319)
T PRK00440 79 ERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQ--NTRFILSCNYSS 143 (319)
T ss_pred ccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCC--CCeEEEEeCCcc
Confidence 2211 0111111111111111 2345999999998842 223456666665433 345555667666
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.+.+.+.+ |+. .+.|++++.++...+++.++...+..++.+.+..|+..+.|
T Consensus 144 ~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 144 KIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred ccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77777877 774 68999999999999999999888888888888888877654
No 193
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=8.8e-12 Score=150.58 Aligned_cols=192 Identities=21% Similarity=0.169 Sum_probs=138.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++.. | ..+..+|||||+|+|||++|+++|+.+....
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 346899999999999999988754 1 3345579999999999999999999874321
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
....++.++++.-. +-..++.+...+.. ....|+||||+|.|. ...++.||.
T Consensus 77 C~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK 139 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLK 139 (535)
T ss_pred HHHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHH
Confidence 12234444433210 12334444443221 223599999999883 445677899
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccch
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGA 590 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sga 590 (1205)
.|+.. ...+.+|.+|+.+..|.+++++ |+ ..++|..++.++....+...+...+..++.+.+..|+..+.| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 99854 3456666677777889999998 86 689999999999999999888888888888888888887765 566
Q ss_pred hHHHHhHHHH
Q 000973 591 DLKALCTEAA 600 (1205)
Q Consensus 591 dI~~L~~eA~ 600 (1205)
++.+++..++
T Consensus 214 ~alnlLdqai 223 (535)
T PRK08451 214 DTLTLLDQAI 223 (535)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 194
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6.9e-12 Score=154.47 Aligned_cols=192 Identities=21% Similarity=0.225 Sum_probs=138.0
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCe----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK---------- 443 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~---------- 443 (1205)
...+|++|+|++.++..|..++.. | +.+..+||+||+|+|||++|+++|+.+......
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 346899999999999999998754 1 446689999999999999999999998643211
Q ss_pred --------------EEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHH
Q 000973 444 --------------VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIV 505 (1205)
Q Consensus 444 --------------~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~ 505 (1205)
..++.++.... ..-..++.++..+.. ....|+||||+|.|. ....
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~------~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~ 149 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASH------TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAF 149 (598)
T ss_pred cccHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHH
Confidence 11222222110 112345555555432 234699999999883 3456
Q ss_pred HHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhh
Q 000973 506 STLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (1205)
Q Consensus 506 ~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~ 585 (1205)
+.|+..|+.. ...+++|.+|+.+..+.+.+++ |+ ..|.|..++.++...+|...+.+.+..++.+.+..|+..+.
T Consensus 150 naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888843 3456666677777778888888 77 67999999999999999999988888888888888888776
Q ss_pred cccchhHHHHhHHHH
Q 000973 586 GYCGADLKALCTEAA 600 (1205)
Q Consensus 586 G~sgadI~~L~~eA~ 600 (1205)
| +.+++.+++..++
T Consensus 225 G-dlr~al~~Ldkli 238 (598)
T PRK09111 225 G-SVRDGLSLLDQAI 238 (598)
T ss_pred C-CHHHHHHHHHHHH
Confidence 5 5555555555443
No 195
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=1.6e-11 Score=147.57 Aligned_cols=206 Identities=12% Similarity=0.162 Sum_probs=135.7
Q ss_pred cccccc-cCChhHH--HHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 375 SVSFDD-IGGLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 375 ~~~~~~-i~Gl~~~--k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+|++ ++|-.+. ...+..+... | | ...++++|||++|||||+|++++++.+........++.+++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~----~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKN----P------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhC----c------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 468888 4465442 3334333221 1 1 12357999999999999999999998864333455667788
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 452 ADVLSKWVGEAER---QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~---~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
.+++..+...... .+..+.... ....||+|||++.+.++. .....|+..++.+...+..+||++..
T Consensus 180 ~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 180 DEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE---------KTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 8887766554332 122222221 345699999999885431 23344555555555555556665555
Q ss_pred cccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCC--CCchhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQ--PPSRELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~--~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
.|.. +++.|.+ ||. .++.+..|+.+++.+||+..+...+. .+++++++.|+..+.| +.+.+..+|..+..
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 5544 5678888 774 56778899999999999998877553 6888999999988876 66777777776654
Q ss_pred HHHH
Q 000973 602 RAFR 605 (1205)
Q Consensus 602 ~a~r 605 (1205)
.+..
T Consensus 326 ~a~~ 329 (450)
T PRK14087 326 WSQQ 329 (450)
T ss_pred HHhc
Confidence 4443
No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.32 E-value=3.2e-12 Score=152.44 Aligned_cols=199 Identities=22% Similarity=0.222 Sum_probs=151.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
..-+|++|+|++.+...|+.++..- +...+.||+||-|||||++||.+|+.+.+......-....|..
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3468999999999999999988651 3456799999999999999999999986553110001111111
Q ss_pred hHHHH-------------HHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc
Q 000973 454 VLSKW-------------VGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (1205)
Q Consensus 454 l~~~~-------------~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~ 516 (1205)
+..-. ...+-..++.+.+.+.. .+.-|++|||+|.| +....+.||..++ .
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--E 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--c
Confidence 11000 01123455666666543 44569999999998 4567788888888 4
Q ss_pred cCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHh
Q 000973 517 SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALC 596 (1205)
Q Consensus 517 ~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~ 596 (1205)
.-.+|++|.+|+.+..|+..+++ |+ ..+.|...+.++....|...+.+.++..+++.+..+|....| +.+|..+++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 45679999999999999999999 88 678999999999999999999999999999999999988887 778888888
Q ss_pred HHHHH
Q 000973 597 TEAAI 601 (1205)
Q Consensus 597 ~eA~~ 601 (1205)
..|..
T Consensus 222 Dq~i~ 226 (515)
T COG2812 222 DQAIA 226 (515)
T ss_pred HHHHH
Confidence 87764
No 197
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7.7e-12 Score=147.71 Aligned_cols=179 Identities=21% Similarity=0.275 Sum_probs=128.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-------CeEEE
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------QKVSF 446 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------~~~~~ 446 (1205)
...+|++|+|++.+++.|...+.. | ..+.++|||||||+|||++|+++|+.+...+ ....+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 456899999999999999888754 1 3456899999999999999999999886532 12223
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEE
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVV 522 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~vi 522 (1205)
+.+++... .....++.++..+.. ....||||||+|.+. ...+..|+..++.. ...++
T Consensus 80 ~~l~~~~~------~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~~--~~~~~ 140 (367)
T PRK14970 80 FELDAASN------NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEEP--PAHAI 140 (367)
T ss_pred EEeccccC------CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhCC--CCceE
Confidence 33332211 112345555554432 234699999999774 22356677777642 33456
Q ss_pred EEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 523 VI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
+|.+++....+.+++.+ |+ ..+.|+.|+.++...++...+...+..++.+.++.|+..+.|
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 66667777788888887 66 468999999999999999888888888888888888887554
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.31 E-value=5.7e-12 Score=160.05 Aligned_cols=208 Identities=17% Similarity=0.206 Sum_probs=137.0
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc-hhhH---
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-ADVL--- 455 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~-~~l~--- 455 (1205)
+..|++.+|+.|.+++...... +-.....++|+||||||||++++.+|..++.....+.+-.+.. ..+.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4899999999999887642211 1123346999999999999999999999864432222211111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCc-------------ccCCcEE
Q 000973 456 SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-------------DSRGQVV 522 (1205)
Q Consensus 456 ~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~-------------~~~~~vi 522 (1205)
..|.|.....+...+..+....| ||||||||.+.+.... .....|+..|+.- ..-++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 23455554555555555544445 8999999999653211 1345577777631 1226799
Q ss_pred EEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccc----------cCCCCchhHHHHHhhh-hhcccchh
Q 000973 523 LIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----------WKQPPSRELKSELAAS-CVGYCGAD 591 (1205)
Q Consensus 523 VI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----------~~~~~~~~~l~~LA~~-t~G~sgad 591 (1205)
+|+|+|.. .|+++|+. || .+|.|..++.++..+|++.++.. ..+.++++++..|+.. +..+-.+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999987 59999999 99 57999999999999999888741 1234677777777753 23444566
Q ss_pred HHHHhHHHHHHHHHH
Q 000973 592 LKALCTEAAIRAFRE 606 (1205)
Q Consensus 592 I~~L~~eA~~~a~rr 606 (1205)
|+.++...+...+.+
T Consensus 544 LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 544 LEREISKLCRKAVKQ 558 (784)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666655554443
No 199
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.30 E-value=1.3e-11 Score=133.36 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=141.2
Q ss_pred CccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEE
Q 000973 367 IQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (1205)
Q Consensus 367 ~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (1205)
+.|+.....+.+++|+|.+.+++.|.+-... |-. | .+.+++||||+.|||||++++++..++...+ ..+
T Consensus 15 l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRl 83 (249)
T PF05673_consen 15 LEPIKHPDPIRLDDLIGIERQKEALIENTEQ-------FLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQG--LRL 83 (249)
T ss_pred EEecCCCCCCCHHHhcCHHHHHHHHHHHHHH-------HHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceE
Confidence 4455556789999999999999999775433 221 2 5788999999999999999999999998776 556
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc--CCcEEE
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVL 523 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~--~~~viV 523 (1205)
+.+...++. .+-.++..... ..+-|||+||+- + .. ...-...|..+|++.-. ..+|+|
T Consensus 84 Iev~k~~L~---------~l~~l~~~l~~~~~kFIlf~DDLs-F-e~--------~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 84 IEVSKEDLG---------DLPELLDLLRDRPYKFILFCDDLS-F-EE--------GDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred EEECHHHhc---------cHHHHHHHHhcCCCCEEEEecCCC-C-CC--------CcHHHHHHHHHhcCccccCCCcEEE
Confidence 677665543 23334444332 234599999973 2 11 12234557777776432 368999
Q ss_pred Eccccccccccccc-----------c----------CCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHH----
Q 000973 524 IGATNRVDAIDGAL-----------R----------RPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKS---- 578 (1205)
Q Consensus 524 I~atn~~~~ld~aL-----------~----------r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~---- 578 (1205)
.+|+|+-..+...+ . -..||..+|.|..|+.++-++|++.++...++.++.+.+.
T Consensus 145 yATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 145 YATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEAL 224 (249)
T ss_pred EEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999855433211 1 1139999999999999999999999999988888754443
Q ss_pred HHhhhhhcccchhHHHHhHH
Q 000973 579 ELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 579 ~LA~~t~G~sgadI~~L~~e 598 (1205)
..|..-.|.||+-..+.+..
T Consensus 225 ~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 225 QWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 23344456777776666553
No 200
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.30 E-value=1e-11 Score=146.09 Aligned_cols=224 Identities=21% Similarity=0.270 Sum_probs=146.6
Q ss_pred cccc-cCChhHHHHHhhhhhccccccccccccc----cc-CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000973 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFASY----HI-TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 377 ~~~~-i~Gl~~~k~~L~e~v~~pl~~~~~~~~~----g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.+++ |+|+++++..|..++......-...... ++ ....+|||+||||||||++|++||..++ ++|..++
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~~d 148 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAIAD 148 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEEec
Confidence 3444 7999999999987774321111000000 01 1246899999999999999999998874 5677777
Q ss_pred chhhH-HHHHHHH-HHHHHHHHHHH----hhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCccc----
Q 000973 451 GADVL-SKWVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDS---- 517 (1205)
Q Consensus 451 ~~~l~-~~~~g~~-e~~l~~lf~~a----~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~---- 517 (1205)
+..+. ..|+|.. +..+..++..+ ....++||||||||.+.+.+.+. .+-....++..||..|++...
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~ 228 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPP 228 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceeccc
Confidence 76654 2466653 34444444332 23456799999999998643221 111123578889999876431
Q ss_pred -------CCcEEEEccccccc--------------------------------------------------cccccccCC
Q 000973 518 -------RGQVVLIGATNRVD--------------------------------------------------AIDGALRRP 540 (1205)
Q Consensus 518 -------~~~viVI~atn~~~--------------------------------------------------~ld~aL~r~ 540 (1205)
..++++|.|+|... .+.|+|+.
T Consensus 229 ~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg- 307 (413)
T TIGR00382 229 QGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG- 307 (413)
T ss_pred CCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC-
Confidence 13467777776510 02345544
Q ss_pred CCccccccCCCCCchhhhhhhhcc----cc---------ccCCCCchhHHHHHhhh--hhcccchhHHHHhHHHHHHHHH
Q 000973 541 GRFDREFNFPLPGCEARAEILDIH----TR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 541 gRf~~~I~~~~P~~eer~~Il~~~----l~---------~~~~~~~~~~l~~LA~~--t~G~sgadI~~L~~eA~~~a~r 605 (1205)
|++.++.|.+.+.+++.+|+... ++ +..+.+++++++.|+.. ...+-.+-|+.++.......+.
T Consensus 308 -Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 308 -RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred -CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 99999999999999999998652 22 23445678888889886 3456678899988888777766
Q ss_pred Hh
Q 000973 606 EK 607 (1205)
Q Consensus 606 r~ 607 (1205)
+.
T Consensus 387 e~ 388 (413)
T TIGR00382 387 DL 388 (413)
T ss_pred hC
Confidence 54
No 201
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-12 Score=156.23 Aligned_cols=94 Identities=24% Similarity=0.313 Sum_probs=86.5
Q ss_pred HHHHHhCCCCCccccC-CCCCccccchhccccceeeeecccccCCCCCCccCccCCCChhhhhhhcccCCcCcCCccccc
Q 000973 55 QIARMFGPGKRTVRTS-NKNSVPLNLRRSTRKRRISVNLEDYTDSSGSEDEDLMRPSYRPLRNRMRNNMSQDELSPSKRK 133 (1205)
Q Consensus 55 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (1205)
-|.++||++|+++|+. +..|.++++||++||++++.|.+|+++| |||| |++++|+ ++.++.+.++...
T Consensus 1625 sfsevlkrskkeeraia~~kPd~krvrrtsrrdsDqengSdnreS--mede-------RnagdRa--se~qesl~iR~dd 1693 (3015)
T KOG0943|consen 1625 SFSEVLKRSKKEERAIAPLKPDPKRVRRTSRRDSDQENGSDNRES--MEDE-------RNAGDRA--SEIQESLPIRGDD 1693 (3015)
T ss_pred hHHHHHhhhhhhhccccCCCCCcchhccccccccccccCcccchh--hhhh-------cChhhhh--hhhhhcccccCCc
Confidence 4789999999999998 8999999999999999999999999999 9999 9999999 8899999999999
Q ss_pred cccccCCCCcccCCCCcchhhhhhcc
Q 000973 134 KVVEAKPTPRREGLRPRRSMVATRKQ 159 (1205)
Q Consensus 134 ~~~~~~~~~rr~~~~~~~~~~~~~~~ 159 (1205)
..+...++|||+.+..++.+..+...
T Consensus 1694 eaqd~iptprrrrllsgnttndtnaD 1719 (3015)
T KOG0943|consen 1694 EAQDDIPTPRRRRLLSGNTTNDTNAD 1719 (3015)
T ss_pred cccccCCCchhhhhccCCccCccccc
Confidence 99999999999999988876665544
No 202
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.28 E-value=5.4e-12 Score=159.01 Aligned_cols=206 Identities=20% Similarity=0.263 Sum_probs=139.8
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH----
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL---- 455 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~---- 455 (1205)
.|+|+++++..|.+.+..... .+.. .-+|..++||+||||||||++|+++|..++ .+|+.++++++.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~--gl~~--~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA--GLGH--EHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc--cccC--CCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc
Confidence 489999999999998865211 0000 012334799999999999999999999985 456666666543
Q ss_pred -HHHHHHHH-----HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc---c------CCc
Q 000973 456 -SKWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---S------RGQ 520 (1205)
Q Consensus 456 -~~~~g~~e-----~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---~------~~~ 520 (1205)
..++|... .....+.........+||||||||.+ +..+++.|+..|+... . -.+
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 33333211 11112333344555689999999987 3567888998887421 1 136
Q ss_pred EEEEcccccc-------------------------ccccccccCCCCccccccCCCCCchhhhhhhhcccc---------
Q 000973 521 VVLIGATNRV-------------------------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR--------- 566 (1205)
Q Consensus 521 viVI~atn~~-------------------------~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~--------- 566 (1205)
++||+|||.- ..+.|.|+. |++.+|.|++.+.++..+|+...+.
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~ 676 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQK 676 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999832 124577777 9999999999999999999976654
Q ss_pred ccCCCCchhHHHHHhhhh--hcccchhHHHHhHHHHHHHHHHh
Q 000973 567 KWKQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 567 ~~~~~~~~~~l~~LA~~t--~G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
+..+.+++.+++.|+... ..+-.+.|+.++..-....+.+.
T Consensus 677 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 677 GVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred CCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 344566788888888643 33556778887777666555543
No 203
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.9e-11 Score=140.51 Aligned_cols=231 Identities=18% Similarity=0.198 Sum_probs=166.3
Q ss_pred ccccccccccc-cCChhHHH--HHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEE
Q 000973 370 LQVDESVSFDD-IGGLSEYI--DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (1205)
Q Consensus 370 ~~~~~~~~~~~-i~Gl~~~k--~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (1205)
....+..+|++ |+|-.+.. .....+-..| | .+-+.++||||.|+|||+|++|+++.+...+....+
T Consensus 78 ~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v 146 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARV 146 (408)
T ss_pred ccCCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceE
Confidence 34568889999 55555433 3333333221 1 245679999999999999999999999888888888
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
+.+....++..++......-..-|..-. .-.+|+||||+.+.++. .....|+..++.+...++-+|+.+
T Consensus 147 ~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~---------~~qeefFh~FN~l~~~~kqIvlts 215 (408)
T COG0593 147 VYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE---------RTQEEFFHTFNALLENGKQIVLTS 215 (408)
T ss_pred EeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh---------hHHHHHHHHHHHHHhcCCEEEEEc
Confidence 9999999988887776665555666655 44699999999997542 234556666666666777777777
Q ss_pred ccccccc---cccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 527 TNRVDAI---DGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 527 tn~~~~l---d~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
-..|..+ .+.|++ ||. .++.+.+|+.+.|..||+..+...+..++++++..+|.+... +.++|..++.....
T Consensus 216 dr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~ 292 (408)
T COG0593 216 DRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDA 292 (408)
T ss_pred CCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence 6777664 478888 875 467888999999999999999999999999999999988664 45566666655554
Q ss_pred HHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000973 602 RAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 602 ~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
.+..... .||.....++|..+...
T Consensus 293 ~a~~~~~-----------------~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 293 FALFTKR-----------------AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHhcCc-----------------cCcHHHHHHHHHHhhcc
Confidence 4443321 36666666666655443
No 204
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.3e-11 Score=146.74 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=129.0
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.+++.|+.++.. | ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 346899999999999999887754 1 3455699999999999999999999985421
Q ss_pred ---------------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHH
Q 000973 442 ---------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (1205)
Q Consensus 442 ---------------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~ 502 (1205)
...+++.+++... ..-..++.+.+.+. .....|+||||+|.|. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~ 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------I 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------H
Confidence 0012222332111 01233444444442 1223599999999884 2
Q ss_pred HHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhh
Q 000973 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (1205)
Q Consensus 503 ~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~ 582 (1205)
...+.|+..|+.. ...+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...+...+..++.+.++.|+.
T Consensus 142 ~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2445677777743 3455666666666778888877 66 57999999999999999988888788888888888887
Q ss_pred hhhcccchhHHHHhH
Q 000973 583 SCVGYCGADLKALCT 597 (1205)
Q Consensus 583 ~t~G~sgadI~~L~~ 597 (1205)
.+.| +.+.+.+.+.
T Consensus 217 ~s~g-~lr~a~~~L~ 230 (397)
T PRK14955 217 KAQG-SMRDAQSILD 230 (397)
T ss_pred HcCC-CHHHHHHHHH
Confidence 7765 3333444443
No 205
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.26 E-value=2.2e-12 Score=165.41 Aligned_cols=138 Identities=13% Similarity=0.205 Sum_probs=105.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCcccc---------CCCCCCChhhHHHHhhccccccCCceeeeccch
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALL---------SDPSAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~---------~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
+.+||+||||||||++|++||..+ +.+++.+++..+. ..| +|.....+.+.|..|....| ||||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l-~~~~~~i~~~~~~~~~~i~g~~~~~-~g~~~g~i~~~l~~~~~~~~-villDEid 424 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKAL-NRKFVRFSLGGVRDEAEIRGHRRTY-VGAMPGRIIQGLKKAKTKNP-LFLLDEID 424 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-cCCeEEEeCCCcccHHHHcCCCCce-eCCCCchHHHHHHHhCcCCC-EEEEechh
Confidence 469999999999999999999998 7888887654321 233 67777778888888876665 88999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhc------C-------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhh
Q 000973 775 LWWENAHEQLRAVLLTLLEEL------P-------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~------~-------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i 841 (1205)
++....+....++|+.+|+.. + +..++++|+|||.. +.|++.+..+| .+|+|+.|+.+++.+|
T Consensus 425 k~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~-~~i~~~L~~R~---~vi~~~~~~~~e~~~I 500 (775)
T TIGR00763 425 KIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI-DTIPRPLLDRM---EVIELSGYTEEEKLEI 500 (775)
T ss_pred hcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc-hhCCHHHhCCe---eEEecCCCCHHHHHHH
Confidence 998654444556777777641 1 13578999999987 78888333333 4789999999999999
Q ss_pred HHHHHHH
Q 000973 842 LGRLIEA 848 (1205)
Q Consensus 842 ~~~~l~~ 848 (1205)
++.++..
T Consensus 501 ~~~~l~~ 507 (775)
T TIGR00763 501 AKKYLIP 507 (775)
T ss_pred HHHHHHH
Confidence 9888753
No 206
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=2.2e-11 Score=132.41 Aligned_cols=179 Identities=13% Similarity=0.187 Sum_probs=118.5
Q ss_pred cccccccccccc-cCCh--hHHHHHhhhhhcccccccccccccccCC-CcceeeecCCCChhHHHHHHHHhhhhhcCCeE
Q 000973 369 PLQVDESVSFDD-IGGL--SEYIDALKEMVFFPLLYPDFFASYHITP-PRGVLLCGPPGTGKTLIARALACAASKAGQKV 444 (1205)
Q Consensus 369 ~~~~~~~~~~~~-i~Gl--~~~k~~L~e~v~~pl~~~~~~~~~g~~~-~~~vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (1205)
++...+..+|++ |+|- ..+...++++... ++..+ .+.++||||||||||+|++++|+..+ .
T Consensus 6 ~~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~ 70 (214)
T PRK06620 6 RFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----A 70 (214)
T ss_pred CCCCCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccC-----C
Confidence 344557788999 4554 2345555554321 12223 36799999999999999999988763 2
Q ss_pred EEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEE
Q 000973 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLI 524 (1205)
Q Consensus 445 ~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI 524 (1205)
.++ ..... . ...+ ....+|+|||||.+- . ..|+..++.+...+..+||
T Consensus 71 ~~~--~~~~~-----~------~~~~-----~~~d~lliDdi~~~~-----------~---~~lf~l~N~~~e~g~~ili 118 (214)
T PRK06620 71 YII--KDIFF-----N------EEIL-----EKYNAFIIEDIENWQ-----------E---PALLHIFNIINEKQKYLLL 118 (214)
T ss_pred EEc--chhhh-----c------hhHH-----hcCCEEEEeccccch-----------H---HHHHHHHHHHHhcCCEEEE
Confidence 221 11100 0 0111 123599999999541 1 1344555555556778888
Q ss_pred cccccccc--ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000973 525 GATNRVDA--IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 525 ~atn~~~~--ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
+++..|.. + ++|++ |+. .++.+..|+.+++..+++..+...+..+++++++.|+.++.+ +.+.+..++..
T Consensus 119 ts~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 119 TSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred EcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 88766654 5 77887 774 368899999999999999988877888999999999998865 44555555554
No 207
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.7e-11 Score=150.20 Aligned_cols=189 Identities=23% Similarity=0.222 Sum_probs=133.6
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|..++..- ....++||+||+|+|||++|+++|+.+.....
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 3468999999999999999887641 23457999999999999999999999864211
Q ss_pred ----------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 443 ----------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 443 ----------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
...++.++.. ....-..++.++..+.. ....||||||+|.|. ....+.|
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naL 141 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNAL 141 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHH
Confidence 0112222221 11223456666655542 234599999999883 3456778
Q ss_pred HHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000973 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 509 l~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
|..|+. ....+++|++|+.+..+-+.|++ |+ ..+.|..++.++....+...+.+.+..++.+.+..|+..+.|-
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~- 215 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG- 215 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-
Confidence 888884 34567777778888888888988 77 6788999999988888888887777777778878888777652
Q ss_pred chhHHHHhH
Q 000973 589 GADLKALCT 597 (1205)
Q Consensus 589 gadI~~L~~ 597 (1205)
.+++.+++.
T Consensus 216 lr~A~~lLe 224 (620)
T PRK14948 216 LRDAESLLD 224 (620)
T ss_pred HHHHHHHHH
Confidence 233434433
No 208
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.7e-11 Score=150.60 Aligned_cols=190 Identities=20% Similarity=0.236 Sum_probs=130.6
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-----------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------- 442 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------- 442 (1205)
...+|++|+|++.++..|+.++... ..+..+||+||+|+|||++|+++|+.+.....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3468999999999999998877541 23446799999999999999999998753211
Q ss_pred ---------eEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHH
Q 000973 443 ---------KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (1205)
Q Consensus 443 ---------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll 509 (1205)
...++.+++.... .-..++.+...+.. ....||||||+|.|. ...++.|+
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~------~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLL 141 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHT------SVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALL 141 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccC------CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHH
Confidence 1122333322111 11223333333221 234599999999884 23466788
Q ss_pred HHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccc
Q 000973 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (1205)
Q Consensus 510 ~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sg 589 (1205)
..|+.. ...++||.+++..+.+.+.+++ |+ ..+.|..++..+...++...+...+..++.+.+..|+..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888853 3456666667777778888877 66 568899999999999999888888888888888888887765 44
Q ss_pred hhHHHHhHH
Q 000973 590 ADLKALCTE 598 (1205)
Q Consensus 590 adI~~L~~e 598 (1205)
+++.+++..
T Consensus 216 r~al~~Lek 224 (585)
T PRK14950 216 RDAENLLQQ 224 (585)
T ss_pred HHHHHHHHH
Confidence 555554443
No 209
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.2e-11 Score=148.76 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=127.0
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------ 441 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------ 441 (1205)
...+|++|+|++.++..|+.++.. | ..+..+||+||+|||||++|+++|+.+....
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 346899999999999999987654 1 3445699999999999999999999986421
Q ss_pred ---------------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHH
Q 000973 442 ---------------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (1205)
Q Consensus 442 ---------------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~ 502 (1205)
...+|+.+++.... ....++.+.+.+. .....|+||||+|.|. .
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~------~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~ 141 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNN------SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------T 141 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------H
Confidence 01122222221110 1234444444442 2234599999999884 2
Q ss_pred HHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhh
Q 000973 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (1205)
Q Consensus 503 ~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~ 582 (1205)
...+.|+..|+.. ...+++|.+|+.+..|.+.+++ |+ ..|.|..++.++....+...+...+..++.+.++.|+.
T Consensus 142 ~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456788888853 3446666666667788888887 66 67999999999999999888887787888888888888
Q ss_pred hhhc
Q 000973 583 SCVG 586 (1205)
Q Consensus 583 ~t~G 586 (1205)
.+.|
T Consensus 217 ~s~G 220 (620)
T PRK14954 217 KAQG 220 (620)
T ss_pred HhCC
Confidence 7765
No 210
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.23 E-value=7e-11 Score=147.20 Aligned_cols=227 Identities=24% Similarity=0.288 Sum_probs=140.1
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
..+|++|+|++..+..+...+.. ..+.+++|+||||||||++|+++++...... ....|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46889999999999888766543 2345799999999999999999988763211 13467778
Q ss_pred cchhhH-------HHHHHHHH----HHHHHHHHH----------HhhcCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 450 KGADVL-------SKWVGEAE----RQLKLLFEE----------AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 450 ~~~~l~-------~~~~g~~e----~~l~~lf~~----------a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
+|..+- ..++|... ...+..+.. .......||||||++.|- ...+..|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHHH
Confidence 776531 11112110 001111110 011224599999999884 2334455
Q ss_pred HHHhhCcc--------------------------cCCcEEEEccc-cccccccccccCCCCccccccCCCCCchhhhhhh
Q 000973 509 LALMDGLD--------------------------SRGQVVLIGAT-NRVDAIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (1205)
Q Consensus 509 l~~ld~~~--------------------------~~~~viVI~at-n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il 561 (1205)
+..|+.-. ....+++|++| +.+..++++|++ ||. .+.|++++.++...|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 55554210 12245666654 557789999988 885 6788999999999999
Q ss_pred hccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcc
Q 000973 562 DIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (1205)
Q Consensus 562 ~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~ 638 (1205)
+..+...+..++.++++.|+..+. .++..-+++..+...++.+... ... ......|+.+|+..++..
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~--~~~------~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE--AGK------ENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH--hcc------CCCCeeECHHHHHHHhCC
Confidence 999887777778888887777654 3344444444444333222110 000 012346888888877764
No 211
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.23 E-value=6.2e-11 Score=131.41 Aligned_cols=114 Identities=24% Similarity=0.132 Sum_probs=87.3
Q ss_pred CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc------------cccccccccCCCCccc
Q 000973 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (1205)
Q Consensus 478 p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~------------~~~ld~aL~r~gRf~~ 545 (1205)
|.||||||+|.| .-.....|...|+.- ---+||.|||+ |..|+..|+. |. .
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEse---~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALESE---LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhcc---cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 779999999988 233444455555521 12366777776 4456777776 66 5
Q ss_pred cccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 546 ~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+|...+++.++.++|++..+....+.++++.++.|+.....-+-+..-+|+.-|...|.++..
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~ 417 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGS 417 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCC
Confidence 678888999999999999999999999999999999888877778888888888888877653
No 212
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.22 E-value=1.8e-11 Score=156.29 Aligned_cols=203 Identities=24% Similarity=0.286 Sum_probs=140.4
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccC----CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT----PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..|+|++.+++.|.+.+... +.|+. |...+||+||+|||||++|++||..++ ..++.++++++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~ 520 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEY 520 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchh
Confidence 45899999999998887641 22322 233589999999999999999999985 44566666554
Q ss_pred HH-----HHHHHHH-----HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-------
Q 000973 455 LS-----KWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS------- 517 (1205)
Q Consensus 455 ~~-----~~~g~~e-----~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~------- 517 (1205)
.. .++|... .....+...++....+||||||||.+. ..+.+.|+..|+...-
T Consensus 521 ~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 521 MEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred hhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcc
Confidence 32 2222110 112233444455667899999999773 4577788888875311
Q ss_pred --CCcEEEEccccccc-------------------------cccccccCCCCccccccCCCCCchhhhhhhhccccc---
Q 000973 518 --RGQVVLIGATNRVD-------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--- 567 (1205)
Q Consensus 518 --~~~viVI~atn~~~-------------------------~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~--- 567 (1205)
-.+++||+|||... .+.|.|+. ||+.+|.|.+.+.++..+|++..+..
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 13578888887631 14566666 99999999999999999999877653
Q ss_pred ------cCCCCchhHHHHHhhh--hhcccchhHHHHhHHHHHHHHHHh
Q 000973 568 ------WKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 568 ------~~~~~~~~~l~~LA~~--t~G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
..+.+++++++.|+.. ...+..+.|+.++.......+...
T Consensus 668 ~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~ 715 (731)
T TIGR02639 668 QLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 715 (731)
T ss_pred HHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHH
Confidence 2345678888888875 345667788888877766665543
No 213
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.8e-11 Score=149.27 Aligned_cols=238 Identities=20% Similarity=0.221 Sum_probs=162.4
Q ss_pred hhHHHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccC----CCcceeeecC
Q 000973 346 TLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT----PPRGVLLCGP 421 (1205)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~----~~~~vLL~Gp 421 (1205)
.++...+.+..++.......+...+.-.+..--..|+|+++++..|..+|.. .+.|+. |...+||.||
T Consensus 458 ~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GP 529 (786)
T COG0542 458 DIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGP 529 (786)
T ss_pred HHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCC
Confidence 4566666665555443333333333333334445699999999999998865 333443 3347899999
Q ss_pred CCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-----HHHHHHHHH-----HHHHHHHHhhcCCceEEEeccCCccc
Q 000973 422 PGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-----KWVGEAERQ-----LKLLFEEAQRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 422 pGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-----~~~g~~e~~-----l~~lf~~a~~~~p~VL~IDEid~L~~ 491 (1205)
+|||||.||++||..+.. ....++.++.+++.. +.+|..... --.+.+..+....|||+||||+.-
T Consensus 530 TGVGKTELAkaLA~~Lfg--~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-- 605 (786)
T COG0542 530 TGVGKTELAKALAEALFG--DEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-- 605 (786)
T ss_pred CcccHHHHHHHHHHHhcC--CCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc--
Confidence 999999999999999963 246778888887763 333322211 223445556666789999999643
Q ss_pred ccchhhhHHHHHHHHHHHHHhhCccc---C------CcEEEEcccccccc----------------------------cc
Q 000973 492 VRSSKQEQIHNSIVSTLLALMDGLDS---R------GQVVLIGATNRVDA----------------------------ID 534 (1205)
Q Consensus 492 ~r~~~~~~~~~~v~~~Ll~~ld~~~~---~------~~viVI~atn~~~~----------------------------ld 534 (1205)
+..+++.||+.||.-.- . .+.+||+|+|--.. ..
T Consensus 606 ---------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~ 676 (786)
T COG0542 606 ---------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFR 676 (786)
T ss_pred ---------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCC
Confidence 67899999999985321 1 36799999886210 34
Q ss_pred ccccCCCCccccccCCCCCchhhhhhhhccccc---------cCCCCchhHHHHHhhhhh--cccchhHHHHhHHHHHHH
Q 000973 535 GALRRPGRFDREFNFPLPGCEARAEILDIHTRK---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 535 ~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~---------~~~~~~~~~l~~LA~~t~--G~sgadI~~L~~eA~~~a 603 (1205)
|+|+. |++.+|.|.+.+.+...+|+..++.. ..+.+++++.+.|+..+. .|-++-|+.+++.-....
T Consensus 677 PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~ 754 (786)
T COG0542 677 PEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDP 754 (786)
T ss_pred HHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHH
Confidence 66666 99999999999999999999776643 344567788888888765 455667777777666555
Q ss_pred HHH
Q 000973 604 FRE 606 (1205)
Q Consensus 604 ~rr 606 (1205)
+.+
T Consensus 755 La~ 757 (786)
T COG0542 755 LAD 757 (786)
T ss_pred HHH
Confidence 544
No 214
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-10 Score=145.05 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=134.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-------------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA------------- 440 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------------- 440 (1205)
...+|++|+|++.++..|..++.. | ..+..+|||||+|+|||++|+++|+.+...
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 346899999999999999988754 1 334568999999999999999999987521
Q ss_pred -------CCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHH
Q 000973 441 -------GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (1205)
Q Consensus 441 -------~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll 509 (1205)
+....++.+++.... ....++.+...+.. ...-|+||||+|.|. ....+.|+
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLL 142 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNN------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFL 142 (614)
T ss_pred HHHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHH
Confidence 112334444443211 12344555544432 223499999999883 34566788
Q ss_pred HHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccc
Q 000973 510 ALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCG 589 (1205)
Q Consensus 510 ~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sg 589 (1205)
..|+.. ...+++|.+|+....|-+.|++ |+ .++.|..++.++...++...+...+..++.+.+..|+..+.| +.
T Consensus 143 K~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888853 3456666677677788889988 77 679999999999999999988888888888888888877654 33
Q ss_pred hhHHHHhH
Q 000973 590 ADLKALCT 597 (1205)
Q Consensus 590 adI~~L~~ 597 (1205)
+++.+++.
T Consensus 217 r~al~~Le 224 (614)
T PRK14971 217 RDALSIFD 224 (614)
T ss_pred HHHHHHHH
Confidence 44444443
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=5.3e-11 Score=152.93 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=138.1
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccC---CCc-ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT---PPR-GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~---~~~-~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..|+|++.++..|.+.+.... .|+. .|. .+||+||+|||||.+|++||..+... ...|+.++++++
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~ 635 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEF 635 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHh
Confidence 468999999999998886521 1221 233 48999999999999999999998533 235667777665
Q ss_pred HHH------------HHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc------
Q 000973 455 LSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------ 516 (1205)
Q Consensus 455 ~~~------------~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~------ 516 (1205)
... |+|..+. ..+....+....+||+||||+.+ +..+.+.|+..|+...
T Consensus 636 ~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~G 702 (852)
T TIGR03345 636 QEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred hhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCC
Confidence 421 3332211 12334445567789999999866 3567777888887432
Q ss_pred ---cCCcEEEEccccccc-----------------------------cccccccCCCCccccccCCCCCchhhhhhhhcc
Q 000973 517 ---SRGQVVLIGATNRVD-----------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (1205)
Q Consensus 517 ---~~~~viVI~atn~~~-----------------------------~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~ 564 (1205)
.-.+++||+|||... .+.|+|++ |++ +|.|.+.+.++..+|+...
T Consensus 703 r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 703 REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHH
Confidence 014678888988521 13466666 886 8899999999999999776
Q ss_pred ccc----------cCCCCchhHHHHHhhhhhc--ccchhHHHHhHHHHHHHHHH
Q 000973 565 TRK----------WKQPPSRELKSELAASCVG--YCGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 565 l~~----------~~~~~~~~~l~~LA~~t~G--~sgadI~~L~~eA~~~a~rr 606 (1205)
+.. ..+.+++++++.|+..+.+ +-.+.|.+++..-....+..
T Consensus 780 L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 780 LDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 543 2245678888889887654 55677887777655555544
No 216
>PRK09087 hypothetical protein; Validated
Probab=99.17 E-value=1.1e-10 Score=128.19 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=113.6
Q ss_pred cccccccccccccC-ChhH--HHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEE
Q 000973 369 PLQVDESVSFDDIG-GLSE--YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (1205)
Q Consensus 369 ~~~~~~~~~~~~i~-Gl~~--~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (1205)
++...+..+|++++ |-.+ +...+.++.. .+...++|+||+|||||+|++++|...+ +.
T Consensus 11 ~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~~--------------~~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~ 71 (226)
T PRK09087 11 NFSHDPAYGRDDLLVTESNRAAVSLVDHWPN--------------WPSPVVVLAGPVGSGKTHLASIWREKSD-----AL 71 (226)
T ss_pred CCCCCCCCChhceeecCchHHHHHHHHhccc--------------CCCCeEEEECCCCCCHHHHHHHHHHhcC-----CE
Confidence 45566788999955 3322 3333322110 1223599999999999999999997653 22
Q ss_pred EEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEc
Q 000973 446 FYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (1205)
Q Consensus 446 ~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~ 525 (1205)
.++...+...++ ..... .+|+|||++.+... ...|+..++.+...+..+||+
T Consensus 72 --~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~~------------~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 72 --LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGFD------------ETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred --EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCCC------------HHHHHHHHHHHHhCCCeEEEE
Confidence 233322222211 11111 38999999976311 123556666555667778887
Q ss_pred ccccccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 526 ATNRVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 526 atn~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
++..|.. ..+.|++ ||. .++.+..|+.+++.+|++.++...+..+++++++.|+.+..+
T Consensus 124 s~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred CCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 7766553 3577887 774 678999999999999999999988899999999999998875
No 217
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.15 E-value=1.2e-10 Score=150.34 Aligned_cols=239 Identities=20% Similarity=0.218 Sum_probs=149.5
Q ss_pred chhHHHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccC----CCcceeeec
Q 000973 345 DTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHIT----PPRGVLLCG 420 (1205)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~----~~~~vLL~G 420 (1205)
+.++.+.+.+..++.......+...+.--...-...|+|++.++..|...+... ..|+. |...+||+|
T Consensus 534 ~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~G 605 (857)
T PRK10865 534 AEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLG 605 (857)
T ss_pred HHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEC
Confidence 345555555555444333222222222223445567999999999999887642 11222 223689999
Q ss_pred CCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHH-----HHHHHH-----HHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 421 PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK-----WVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 421 ppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~-----~~g~~e-----~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
|+|||||++|++||..+...+ ..|+.++++.+... .+|... .....+....+....+|||||||+.+
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~--~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka- 682 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSD--DAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA- 682 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-
Confidence 999999999999999885332 34667777665432 121100 00011222333344579999999877
Q ss_pred cccchhhhHHHHHHHHHHHHHhhCcc---------cCCcEEEEccccccc-------------------------ccccc
Q 000973 491 PVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD-------------------------AIDGA 536 (1205)
Q Consensus 491 ~~r~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~viVI~atn~~~-------------------------~ld~a 536 (1205)
...++..|+..|+... ...+.+||+|||... .+.|+
T Consensus 683 ----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 752 (857)
T PRK10865 683 ----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPE 752 (857)
T ss_pred ----------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHH
Confidence 3456777888886321 113467888888621 13467
Q ss_pred ccCCCCccccccCCCCCchhhhhhhhccccc---------cCCCCchhHHHHHhhhhh--cccchhHHHHhHHHHHHHHH
Q 000973 537 LRRPGRFDREFNFPLPGCEARAEILDIHTRK---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 537 L~r~gRf~~~I~~~~P~~eer~~Il~~~l~~---------~~~~~~~~~l~~LA~~t~--G~sgadI~~L~~eA~~~a~r 605 (1205)
|+. |++.++.|.+++.++...|++.++.. ..+.++.++++.|+.... .|..+.|+.++..-+...+.
T Consensus 753 Lln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 753 FIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred HHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHH
Confidence 776 89999999999999999998766644 234568888888886532 23456788777766655554
Q ss_pred H
Q 000973 606 E 606 (1205)
Q Consensus 606 r 606 (1205)
+
T Consensus 831 ~ 831 (857)
T PRK10865 831 Q 831 (857)
T ss_pred H
Confidence 4
No 218
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.4e-11 Score=138.52 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=101.4
Q ss_pred ccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh
Q 000973 700 LVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN 779 (1205)
Q Consensus 700 ~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~ 779 (1205)
..|++|.|||||||||||.+..|+|++| ++.++-+.+.++-.+ ++ +++|+..+... +||+|.+||.-+..
T Consensus 232 kawKRGYLLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v~~n-----~d--Lr~LL~~t~~k--SIivIEDIDcs~~l 301 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEVKLD-----SD--LRHLLLATPNK--SILLIEDIDCSFDL 301 (457)
T ss_pred cchhccceeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccccCc-----HH--HHHHHHhCCCC--cEEEEeeccccccc
Confidence 3467899999999999999999999999 888888876555332 22 89988877655 79999999998631
Q ss_pred ----------HH----HHHHHHHHHHHHhcCCC--CCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhh
Q 000973 780 ----------AH----EQLRAVLLTLLEELPSH--LPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLF 841 (1205)
Q Consensus 780 ----------~~----~~~~~~ll~lL~~~~~~--~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i 841 (1205)
.+ .-.+.-||.++|++-+. .--|||.|||.. +.||| |.+|+|| ..|++..=+.++-..+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~-EkLDP--ALlRpGRmDmhI~mgyCtf~~fK~L 378 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK-EKLDP--ALLRPGRMDMHIYMGYCTFEAFKTL 378 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh-hhcCH--hhcCCCcceeEEEcCCCCHHHHHHH
Confidence 01 12355688889988542 355777899998 99999 9999998 6666776676665555
Q ss_pred HHHHH
Q 000973 842 LGRLI 846 (1205)
Q Consensus 842 ~~~~l 846 (1205)
+..+|
T Consensus 379 a~nYL 383 (457)
T KOG0743|consen 379 ASNYL 383 (457)
T ss_pred HHHhc
Confidence 55555
No 219
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.13 E-value=1.9e-10 Score=148.99 Aligned_cols=207 Identities=22% Similarity=0.263 Sum_probs=142.8
Q ss_pred ccccCChhHHHHHhhhhhccccccccccccccc----CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...|+|++.++..|...+... ..|+ .|...+||+||+|||||++|++||..+.... ..|+.++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~ 633 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSE 633 (852)
T ss_pred hcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 356999999999999987652 1122 2345689999999999999999999885433 3566666655
Q ss_pred hHH-----HHHHHHHH-----HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-------
Q 000973 454 VLS-----KWVGEAER-----QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (1205)
Q Consensus 454 l~~-----~~~g~~e~-----~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~------- 516 (1205)
+.. .++|.... ....+.........+|||||||+.+ +..+++.|+..|+.-.
T Consensus 634 ~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 634 YMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred hcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCe
Confidence 432 22221100 0122333444455679999999877 4567788888886421
Q ss_pred --cCCcEEEEcccccccc-------------------------ccccccCCCCccccccCCCCCchhhhhhhhccccc--
Q 000973 517 --SRGQVVLIGATNRVDA-------------------------IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-- 567 (1205)
Q Consensus 517 --~~~~viVI~atn~~~~-------------------------ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~-- 567 (1205)
.-.+++||+|||.... +.|.|.. |++.++.|.+++.++..+|+...+..
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~ 780 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLR 780 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHH
Confidence 1246789999987211 2355665 89999999999999999999765542
Q ss_pred -------cCCCCchhHHHHHhhhhh--cccchhHHHHhHHHHHHHHHHh
Q 000973 568 -------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 568 -------~~~~~~~~~l~~LA~~t~--G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
..+.++.++++.|+.... .+..+.|++++.......+.+.
T Consensus 781 ~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 781 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred HHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 235678888888988743 5778899999988887766653
No 220
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.6e-11 Score=143.23 Aligned_cols=139 Identities=14% Similarity=0.225 Sum_probs=108.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC--------CCCCCChhhHHHHhhccccccCCceeeeccchh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~--------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~ 775 (1205)
|-++|+||||+|||.|++.||..+ +..|+++++..+-. .-|+|..-..+-|-+.+|....| |++|||||+
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al-~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDK 428 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKAL-GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDK 428 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHh-CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhh
Confidence 458899999999999999999999 88999988765431 22478888888898999998887 666999999
Q ss_pred hHHhHHHHHHHHHHHHHHhc------------C-CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 776 WWENAHEQLRAVLLTLLEEL------------P-SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 776 l~~~~~~~~~~~ll~lL~~~------------~-~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
+.......-..+||..||-= + +-..|++|||+|.. +.+|. .+.+.=++|.+.-++.+|..+|-
T Consensus 429 m~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl-~tIP~---PLlDRMEiI~lsgYt~~EKl~IA 504 (782)
T COG0466 429 MGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL-DTIPA---PLLDRMEVIRLSGYTEDEKLEIA 504 (782)
T ss_pred ccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc-ccCCh---HHhcceeeeeecCCChHHHHHHH
Confidence 98765555555666666531 1 24689999999987 66775 44441289999999999999999
Q ss_pred HHHHHH
Q 000973 843 GRLIEA 848 (1205)
Q Consensus 843 ~~~l~~ 848 (1205)
+.||-.
T Consensus 505 k~~LiP 510 (782)
T COG0466 505 KRHLIP 510 (782)
T ss_pred HHhcch
Confidence 988753
No 221
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.13 E-value=2.7e-11 Score=146.98 Aligned_cols=103 Identities=23% Similarity=0.427 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000973 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.+...+..++.++..|..+|+|..||...++|+||.+|++||||.||..+|.+++|.....|+.|+..||.||+.||+.
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~- 684 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS- 684 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc-
Confidence 4667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhhhccCh
Q 000973 978 YNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
.+.+++.|..|...|...+.....
T Consensus 685 --~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 685 --DTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred --cchheecccchhhhhcchhhhhhh
Confidence 567999999999999887765543
No 222
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.8e-10 Score=130.93 Aligned_cols=214 Identities=19% Similarity=0.239 Sum_probs=143.2
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
...-+.+.+.++.+.+|..++...+. -..|.+++++|+||||||++++.+++++........++.++|..+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 33444599999999999888654322 244567999999999999999999999976644444677777433
Q ss_pred HH------HHHH---------H-HHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc
Q 000973 455 LS------KWVG---------E-AERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (1205)
Q Consensus 455 ~~------~~~g---------~-~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~ 517 (1205)
-. ..+. . .......+++.... ....||+|||+|.|....+ .++..|+.+....
T Consensus 84 ~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~-- 153 (366)
T COG1474 84 RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN-- 153 (366)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--
Confidence 21 1111 1 22233333333333 3456999999999985432 5777777766644
Q ss_pred CCcEEEEccccccc---cccccccCCCCcc-ccccCCCCCchhhhhhhhccccc--cCCCCchhHHHHHhhhhhcccc--
Q 000973 518 RGQVVLIGATNRVD---AIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCVGYCG-- 589 (1205)
Q Consensus 518 ~~~viVI~atn~~~---~ld~aL~r~gRf~-~~I~~~~P~~eer~~Il~~~l~~--~~~~~~~~~l~~LA~~t~G~sg-- 589 (1205)
..++.||+.+|..+ .+++.+.+ +|. ..|.||+++.+|...||...+.. ....+++++++.+|......+|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDA 231 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDA 231 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccH
Confidence 56788999998864 47888877 443 45899999999999999877764 2334566676655544433332
Q ss_pred hhHHHHhHHHHHHHHHHhCC
Q 000973 590 ADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 590 adI~~L~~eA~~~a~rr~~~ 609 (1205)
+-.-.+|+.|+..|-++..+
T Consensus 232 R~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 33345688888888776543
No 223
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.11 E-value=5.2e-10 Score=112.52 Aligned_cols=140 Identities=40% Similarity=0.647 Sum_probs=87.8
Q ss_pred ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH
Q 000973 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA 462 (1205)
Q Consensus 383 Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~ 462 (1205)
|.+.++..+...+.. ....+++|+||||||||++++.++..+.... ..++.+++...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 66 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAE 66 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHH
Confidence 556666666665433 2456899999999999999999999985333 4455555555443332222
Q ss_pred HHH---HHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----CCcEEEEccccccc--cc
Q 000973 463 ERQ---LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----RGQVVLIGATNRVD--AI 533 (1205)
Q Consensus 463 e~~---l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~----~~~viVI~atn~~~--~l 533 (1205)
... ....+.......+.+|+|||++.+. ......++..+..... ..++.||++++... .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~ 135 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhh-----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCc
Confidence 111 1222333344567899999998772 1223344444444332 35788888888766 56
Q ss_pred cccccCCCCccccccCC
Q 000973 534 DGALRRPGRFDREFNFP 550 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~ 550 (1205)
++.+.. ||+..|.++
T Consensus 136 ~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 136 DRALYD--RLDIRIVIP 150 (151)
T ss_pred ChhHHh--hhccEeecC
Confidence 777776 887777665
No 224
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.11 E-value=1.2e-10 Score=150.29 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=137.6
Q ss_pred cccCChhHHHHHhhhhhccccccccccccccc----CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..|+|++.++..|..++... +.|+ .|...+||+||+|||||+||++||+.+... ...++.++.+++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~ 578 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEY 578 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhc
Confidence 46899999999999887642 1222 222358999999999999999999988532 245666666554
Q ss_pred H-----HHHHHHHH-----HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc--------
Q 000973 455 L-----SKWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (1205)
Q Consensus 455 ~-----~~~~g~~e-----~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-------- 516 (1205)
. ++++|... .....+...++....+||||||||.+ +..+.+.|+..|+...
T Consensus 579 ~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 579 MEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred cccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcE
Confidence 2 22222110 11123445555555689999999977 4567788888887521
Q ss_pred -cCCcEEEEcccccccc-------------------------------------ccccccCCCCccccccCCCCCchhhh
Q 000973 517 -SRGQVVLIGATNRVDA-------------------------------------IDGALRRPGRFDREFNFPLPGCEARA 558 (1205)
Q Consensus 517 -~~~~viVI~atn~~~~-------------------------------------ld~aL~r~gRf~~~I~~~~P~~eer~ 558 (1205)
...+++||+|||.... +.|.|+. |++.+|.|.+.+.++..
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~ 725 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVW 725 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHH
Confidence 1246889999885321 1245566 89999999999999999
Q ss_pred hhhhcccccc---------CCCCchhHHHHHhhhh--hcccchhHHHHhHHHHHHHHHH
Q 000973 559 EILDIHTRKW---------KQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 559 ~Il~~~l~~~---------~~~~~~~~l~~LA~~t--~G~sgadI~~L~~eA~~~a~rr 606 (1205)
+|+...+..+ .+.+++++++.|+... ..+-++.|+.++.......+.+
T Consensus 726 ~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 726 EIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 9998766542 3456778888888863 2445666777776655544443
No 225
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.4e-10 Score=138.07 Aligned_cols=140 Identities=12% Similarity=0.205 Sum_probs=110.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC--------CCCCCChhhHHHHhhccccccCCceeeeccchh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~--------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~ 775 (1205)
+-+.|+||||+|||.+|+.||..| +..|++++...+.. .-|+|..-..+.+.+..++-..| +++|||||+
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~AL-nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDK 516 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARAL-NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDK 516 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHh-CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhh
Confidence 458899999999999999999999 78888887665432 12377777788888888887776 667999999
Q ss_pred hHHhHHHHHHHHHHHHHHhc-------------CCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 776 WWENAHEQLRAVLLTLLEEL-------------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 776 l~~~~~~~~~~~ll~lL~~~-------------~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
+..+.+..-..+|+.+||-= -+-..|++|||+|.. +.||+ .+++.=++|+++-+..+|..+|-
T Consensus 517 lG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i-dtIP~---pLlDRMEvIelsGYv~eEKv~IA 592 (906)
T KOG2004|consen 517 LGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI-DTIPP---PLLDRMEVIELSGYVAEEKVKIA 592 (906)
T ss_pred hCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccc-ccCCh---hhhhhhheeeccCccHHHHHHHH
Confidence 99776666667788888641 124589999999998 78876 33441289999999999999999
Q ss_pred HHHHHHH
Q 000973 843 GRLIEAA 849 (1205)
Q Consensus 843 ~~~l~~~ 849 (1205)
+.||-.+
T Consensus 593 ~~yLip~ 599 (906)
T KOG2004|consen 593 ERYLIPQ 599 (906)
T ss_pred HHhhhhH
Confidence 9998653
No 226
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.10 E-value=7.4e-11 Score=125.98 Aligned_cols=124 Identities=23% Similarity=0.298 Sum_probs=76.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
+++||+||||+|||+||..||+++ +.+|..++.+.+- + ...+..++..... ..|||||||+.|-...++-
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~~~sg~~i~-k------~~dl~~il~~l~~--~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL-GVNFKITSGPAIE-K------AGDLAAILTNLKE--GDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC-T--EEEEECCC---S------CHHHHHHHHT--T--T-EEEECTCCC--HHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhcc-CCCeEeccchhhh-h------HHHHHHHHHhcCC--CcEEEEechhhccHHHHHH
Confidence 479999999999999999999999 7888776654331 1 1234555555443 4699999999987765554
Q ss_pred HHHHHHHHHHhc------CC----------CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 784 LRAVLLTLLEEL------PS----------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 784 ~~~~ll~lL~~~------~~----------~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
|+..|.+- .. -.+..+|+||.+. ..|..-+..+|. .+..+..++.++...|++.
T Consensus 121 ----LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~-g~ls~pLrdRFg--i~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 121 ----LLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA-GLLSSPLRDRFG--IVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp ----HHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG-CCTSHCCCTTSS--EEEE----THHHHHHHHHH
T ss_pred ----HHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc-cccchhHHhhcc--eecchhcCCHHHHHHHHHH
Confidence 56666541 11 1356778888877 666654445554 6668999999998888874
No 227
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.10 E-value=3.3e-10 Score=128.23 Aligned_cols=105 Identities=24% Similarity=0.147 Sum_probs=67.4
Q ss_pred CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc------------cccccccccCCCCccc
Q 000973 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (1205)
Q Consensus 478 p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~------------~~~ld~aL~r~gRf~~ 545 (1205)
|.||||||+|.|- -...+.|-..|+.- -.-+||.|||+ |..++..|+. |+ .
T Consensus 279 pGVLFIDEvHmLD-----------iEcFsfLnralEs~---~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----------IECFSFLNRALESE---LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-L 341 (398)
T ss_dssp E-EEEEESGGGSB-----------HHHHHHHHHHHTST---T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-E
T ss_pred cceEEecchhhcc-----------HHHHHHHHHHhcCC---CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-E
Confidence 7799999999883 34455555666632 23466777875 3446777777 77 6
Q ss_pred cccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHH
Q 000973 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (1205)
Q Consensus 546 ~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA 599 (1205)
+|...+++.++..+|++..+....+.++.+.++.|+......+-+-.-+|+.-|
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 788889999999999999999999999999998888777666655555555443
No 228
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.09 E-value=2.5e-10 Score=131.50 Aligned_cols=164 Identities=27% Similarity=0.382 Sum_probs=102.6
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc----CCeEEEEEec
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRK 450 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i~ 450 (1205)
...|.+|+|++.++..|.-.+.. ....|+||+|+||||||++|+++|..+... +..+.+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46799999999999988654322 112589999999999999999999988310 0111111100
Q ss_pred ch---------hhH---------------HHHHHH--HHHHH---HHHHHHH--hhcCCceEEEeccCCcccccchhhhH
Q 000973 451 GA---------DVL---------------SKWVGE--AERQL---KLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQ 499 (1205)
Q Consensus 451 ~~---------~l~---------------~~~~g~--~e~~l---~~lf~~a--~~~~p~VL~IDEid~L~~~r~~~~~~ 499 (1205)
+. .+. ...+|. ....+ ...|..- ......+||||||+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 00 000 001111 00000 0011100 0111249999999887
Q ss_pred HHHHHHHHHHHHhhCcc-----------cCCcEEEEccccccc-cccccccCCCCccccccCCCCCc-hhhhhhhhcc
Q 000973 500 IHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPGC-EARAEILDIH 564 (1205)
Q Consensus 500 ~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-~ld~aL~r~gRf~~~I~~~~P~~-eer~~Il~~~ 564 (1205)
...++..|+..|+.-. ....+++|+++|+.+ .++++|.. ||...+.++.|.. +++.+|+...
T Consensus 141 -~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 -EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred -CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 3567777888886432 124689999999755 48888888 9999999998877 8889998764
No 229
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.08 E-value=2.1e-10 Score=120.30 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=127.7
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000973 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
......+.||+|.++.++.|.-+... ..-.+++|.|||||||||.+.+||+++-...+.-.++.+++
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 33556789999999999999776543 33458999999999999999999999854334444556666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 452 ADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
++--+- .-. +.--..|.+-+- +...||+|||+|++. ...+..|...|+-+.. ...++.++
T Consensus 87 SdeRGI--DvV-Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~--ttRFalaC 150 (333)
T KOG0991|consen 87 SDERGI--DVV-RNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSN--TTRFALAC 150 (333)
T ss_pred cccccc--HHH-HHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcc--cchhhhhh
Confidence 543221 111 111223333221 334599999999884 2344456666664433 34566688
Q ss_pred cccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhH
Q 000973 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (1205)
Q Consensus 528 n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~ 597 (1205)
|..+.|-..+.+ |+ ..+.|...+..+.+.-|....+..++.++++.++.+.-..+| |+++.++
T Consensus 151 N~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred cchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 888888777877 77 467777777777776666677777788888888888776666 4444443
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.07 E-value=5.7e-10 Score=125.53 Aligned_cols=133 Identities=23% Similarity=0.311 Sum_probs=88.8
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc------hhhHHHHHHHHHHH-HHH-----------------
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG------ADVLSKWVGEAERQ-LKL----------------- 468 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~------~~l~~~~~g~~e~~-l~~----------------- 468 (1205)
..++||+||||||||++|+++|..++. +|+.+++ .++++.+.+..... +..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 468999999999999999999997753 3333333 34444433211111 000
Q ss_pred --HHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc--------------cCCcEEEEccccccc-
Q 000973 469 --LFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------------SRGQVVLIGATNRVD- 531 (1205)
Q Consensus 469 --lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~viVI~atn~~~- 531 (1205)
.+-.|.. .+.+|+||||+.+- ..++..|+..|+... ...++.||+|+|+..
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~ 163 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY 163 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc
Confidence 1112222 23599999998763 346666777775321 123678999999753
Q ss_pred ----cccccccCCCCccccccCCCCCchhhhhhhhccc
Q 000973 532 ----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHT 565 (1205)
Q Consensus 532 ----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l 565 (1205)
.++++|.+ || ..+.++.|+.++..+|++.++
T Consensus 164 ~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 164 AGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46888988 88 679999999999999998875
No 231
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.04 E-value=2.2e-09 Score=113.90 Aligned_cols=204 Identities=21% Similarity=0.275 Sum_probs=140.3
Q ss_pred CccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEE
Q 000973 367 IQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF 446 (1205)
Q Consensus 367 ~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~ 446 (1205)
.+|+.....+.+.+|+|.+.+++.|.+-- ..|.. | .+.++|||||.-||||++|++|+.+++...+. .+
T Consensus 48 L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT-------~~F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl--rL 116 (287)
T COG2607 48 LEPVPDPDPIDLADLVGVDRQKEALVRNT-------EQFAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGL--RL 116 (287)
T ss_pred ccCCCCCCCcCHHHHhCchHHHHHHHHHH-------HHHHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCC--eE
Confidence 34555556789999999999999986532 22322 2 56789999999999999999999999987764 47
Q ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc--CCcEEE
Q 000973 447 YMRKGADVLSKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVL 523 (1205)
Q Consensus 447 ~~i~~~~l~~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~--~~~viV 523 (1205)
+.++..++.. +-.+++..+. ...-|||+||+- +- ........|...|++--. ..+|+|
T Consensus 117 VEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-Fe---------~gd~~yK~LKs~LeG~ve~rP~NVl~ 177 (287)
T COG2607 117 VEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS-FE---------EGDDAYKALKSALEGGVEGRPANVLF 177 (287)
T ss_pred EEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC-CC---------CCchHHHHHHHHhcCCcccCCCeEEE
Confidence 7888776542 2334444443 224599999982 21 122334456666775432 357999
Q ss_pred Eccccccccccc--------------------cccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHh--
Q 000973 524 IGATNRVDAIDG--------------------ALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELA-- 581 (1205)
Q Consensus 524 I~atn~~~~ld~--------------------aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA-- 581 (1205)
.+|+|+-..|+. .+--..||...+.|.+++.++-..|+..+++..++..+.+.++.-|
T Consensus 178 YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~ 257 (287)
T COG2607 178 YATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQ 257 (287)
T ss_pred EEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999998654431 1112349999999999999999999999999999988765554333
Q ss_pred --hhhhcccchhHHHHhHHHH
Q 000973 582 --ASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 582 --~~t~G~sgadI~~L~~eA~ 600 (1205)
..-.|-||+-..+.++..+
T Consensus 258 WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 258 WATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHhcCCCccHhHHHHHHHHH
Confidence 3334566666655555433
No 232
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.4e-10 Score=131.38 Aligned_cols=124 Identities=22% Similarity=0.342 Sum_probs=95.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccC----CceeeeccchhhHHh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT----PSILYIPQFNLWWEN 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~----p~ILfiDEid~l~~~ 779 (1205)
++++|+||||||||+||++||... +.+|..++. .+ ..-+.++.+|+.|++.. --|||||||+.+-..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~sA--v~------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT-NAAFEALSA--VT------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh-CCceEEecc--cc------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 369999999999999999999998 788888762 22 23467999999986543 369999999998765
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHH
Q 000973 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l 846 (1205)
-++. +|--++++.-+||-|||..|.-.|-+ .+++.-.||.+.+-+.++...+++..+
T Consensus 120 QQD~-------lLp~vE~G~iilIGATTENPsF~ln~---ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 120 QQDA-------LLPHVENGTIILIGATTENPSFELNP---ALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hhhh-------hhhhhcCCeEEEEeccCCCCCeeecH---HHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 5544 46667778888888899999666665 333323688899999999888888744
No 233
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.03 E-value=8.7e-10 Score=127.18 Aligned_cols=163 Identities=23% Similarity=0.277 Sum_probs=105.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC--CeEEEE----
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFY---- 447 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~---- 447 (1205)
+...|.+|+|++++|..|.-.+..| ...+|||.|++|||||++|++++..+.... ...+|.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999998776653 235899999999999999999988874321 001111
Q ss_pred -----------------------------EecchhhHHHHHHHHHHHHHHHHHHH---------hhcCCceEEEeccCCc
Q 000973 448 -----------------------------MRKGADVLSKWVGEAERQLKLLFEEA---------QRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 448 -----------------------------~i~~~~l~~~~~g~~e~~l~~lf~~a---------~~~~p~VL~IDEid~L 489 (1205)
.+....-....+|... +...|... ......+||||||+.|
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD--~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTID--IEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCccc--HHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 1000000011111100 01111111 0112359999999988
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhCcc-----------cCCcEEEEccccccc-cccccccCCCCccccccCCCCC-chh
Q 000973 490 APVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPG-CEA 556 (1205)
Q Consensus 490 ~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-~ld~aL~r~gRf~~~I~~~~P~-~ee 556 (1205)
. ..++..|+..|+... ....+++|++.|..+ .+.++|.. ||...+.+..|+ .+.
T Consensus 157 ~-----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 157 D-----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred C-----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 4 456666777775311 124688899888765 48888888 999999999997 488
Q ss_pred hhhhhhcc
Q 000973 557 RAEILDIH 564 (1205)
Q Consensus 557 r~~Il~~~ 564 (1205)
+.+|++..
T Consensus 224 e~~il~~~ 231 (350)
T CHL00081 224 RVKIVEQR 231 (350)
T ss_pred HHHHHHhh
Confidence 99999764
No 234
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.6e-09 Score=126.18 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=119.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC--eEEEE-Ee-
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFY-MR- 449 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~-~i- 449 (1205)
....+++|+|++.++..|..++.. | ..+..+||+||+|+|||++|+.+|+.+..... ..+.. ..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 356788999999999999998764 1 34557999999999999999999999855210 00000 00
Q ss_pred --cchh--hH------------HH-------H-HHHHHHHHHHHHHH----HhhcCCceEEEeccCCcccccchhhhHHH
Q 000973 450 --KGAD--VL------------SK-------W-VGEAERQLKLLFEE----AQRNQPSIIFFDEIDGLAPVRSSKQEQIH 501 (1205)
Q Consensus 450 --~~~~--l~------------~~-------~-~g~~e~~l~~lf~~----a~~~~p~VL~IDEid~L~~~r~~~~~~~~ 501 (1205)
.+.. .+ .. . ..-.-..++.+... ...++..|+||||+|.|.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 0000 00 00 0 00001223333222 223445699999999883
Q ss_pred HHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHh
Q 000973 502 NSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELA 581 (1205)
Q Consensus 502 ~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA 581 (1205)
....+.||..|+... .++++|..|+.+..+.+.+++ |+ ..+.|++|+.++...+|........ .+...+..++
T Consensus 155 ~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~ 227 (351)
T PRK09112 155 RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALL 227 (351)
T ss_pred HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHH
Confidence 345566888888643 345555566778888899988 88 6899999999999999987432222 4456666677
Q ss_pred hhhhccc
Q 000973 582 ASCVGYC 588 (1205)
Q Consensus 582 ~~t~G~s 588 (1205)
..+.|-.
T Consensus 228 ~~s~G~p 234 (351)
T PRK09112 228 QRSKGSV 234 (351)
T ss_pred HHcCCCH
Confidence 6666533
No 235
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.1e-09 Score=125.87 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=117.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-e-E-------
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-K-V------- 444 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~-~------- 444 (1205)
...++++|+|++.++..|..++.. | ..+..+||+||+|+||+++|.++|+.+..... . .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 356889999999999999988765 1 34557999999999999999999998853220 0 0
Q ss_pred --------------------EEEEecc--hhhHHHH-HHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhh
Q 000973 445 --------------------SFYMRKG--ADVLSKW-VGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQ 497 (1205)
Q Consensus 445 --------------------~~~~i~~--~~l~~~~-~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~ 497 (1205)
.++.+.. .+-..+. -.-.-..++.+...+. ...+.||+|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0111110 0000000 0001233444443332 345779999999987
Q ss_pred hHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHH
Q 000973 498 EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELK 577 (1205)
Q Consensus 498 ~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l 577 (1205)
.....+.||..++. ...++++|.+|+.++.+.+.+++ |+ ..|.|++|+.++..++|...... .....+
T Consensus 154 ---~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~~~~~~ 221 (365)
T PRK07471 154 ---NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----LPDDPR 221 (365)
T ss_pred ---CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----CCHHHH
Confidence 34566778888884 34456777788888888888887 77 67999999999999998765422 222222
Q ss_pred HHHhhhhhc
Q 000973 578 SELAASCVG 586 (1205)
Q Consensus 578 ~~LA~~t~G 586 (1205)
..++..+.|
T Consensus 222 ~~l~~~s~G 230 (365)
T PRK07471 222 AALAALAEG 230 (365)
T ss_pred HHHHHHcCC
Confidence 445555555
No 236
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.7e-09 Score=125.10 Aligned_cols=175 Identities=16% Similarity=0.220 Sum_probs=115.6
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC---CeEEEEEecchh
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG---QKVSFYMRKGAD 453 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~---~~~~~~~i~~~~ 453 (1205)
+|++|+|++.+++.|...+.. | ..+..+||+||+|+|||++|+++|+.+.... ....++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999888743 1 3445679999999999999999999874321 111222222210
Q ss_pred hHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 454 VLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
+... .-..++.+.+.+. .....|++||++|.+ .....+.||..|+.. ..++++|.+|+.
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEep--p~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEEP--PKGVFIILLCEN 132 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcCC--CCCeEEEEEeCC
Confidence 0001 1123444444322 234459999999887 344567789999853 445666666677
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcc
Q 000973 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~ 587 (1205)
++.+.+.+++ |+ ..+.|..|+.++...++...+. ..+.+.+..++..+.|-
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCC
Confidence 8889999988 77 6899999999998888765543 23344445566655553
No 237
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.97 E-value=1.7e-09 Score=124.81 Aligned_cols=159 Identities=28% Similarity=0.333 Sum_probs=100.1
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhh-------cCC---eEE-
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-------AGQ---KVS- 445 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-------~~~---~~~- 445 (1205)
.|..|+|++.+|..|.-.+..| ...+++|.|++|+|||+++++++..+.. ... .-+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999998875554432 2358999999999999999999987621 000 000
Q ss_pred EEEecch-------------------hhH-----HHHHHHH--HHHH--------HHHHHHHhhcCCceEEEeccCCccc
Q 000973 446 FYMRKGA-------------------DVL-----SKWVGEA--ERQL--------KLLFEEAQRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 446 ~~~i~~~-------------------~l~-----~~~~g~~--e~~l--------~~lf~~a~~~~p~VL~IDEid~L~~ 491 (1205)
++..+|. ++- ...+|.. ...+ ..++..+ ...+||||||+.|.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC-
Confidence 0000000 000 0111211 0110 0122222 23599999999873
Q ss_pred ccchhhhHHHHHHHHHHHHHhhCcc-----------cCCcEEEEccccccc-cccccccCCCCccccccCCCCCc-hhhh
Q 000973 492 VRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPGC-EARA 558 (1205)
Q Consensus 492 ~r~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-~ld~aL~r~gRf~~~I~~~~P~~-eer~ 558 (1205)
..++..|+..|+.-. ....+++|+++|..+ .+.++|.. ||...+.++.|.. +++.
T Consensus 145 ----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 145 ----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 456677788775321 123588899988755 58889988 9999999999976 8888
Q ss_pred hhhhcc
Q 000973 559 EILDIH 564 (1205)
Q Consensus 559 ~Il~~~ 564 (1205)
+|++..
T Consensus 213 eIL~~~ 218 (337)
T TIGR02030 213 EIVERR 218 (337)
T ss_pred HHHHhh
Confidence 888763
No 238
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.97 E-value=4.3e-10 Score=127.66 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=91.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE-ecchhhHHHHHH---HHH---HHHHHHHHHHhhcCCceEEEe
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM-RKGADVLSKWVG---EAE---RQLKLLFEEAQRNQPSIIFFD 484 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~-i~~~~l~~~~~g---~~e---~~l~~lf~~a~~~~p~VL~ID 484 (1205)
..++|||.||||||||++|+.||..++.....+.+.. +...++++.... ... ......+-.|.. .+++||+|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 3568999999999999999999999974433333221 111223332110 000 001122333333 35689999
Q ss_pred ccCCcccccchhhhHHHHHHHHHHHHHhhC------------cccCCcEEEEccccccc------------cccccccCC
Q 000973 485 EIDGLAPVRSSKQEQIHNSIVSTLLALMDG------------LDSRGQVVLIGATNRVD------------AIDGALRRP 540 (1205)
Q Consensus 485 Eid~L~~~r~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~viVI~atn~~~------------~ld~aL~r~ 540 (1205)
||+..- ..++..|..+|+. +.....+.||+|+|+.+ .++.+++.
T Consensus 142 Ein~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 999773 2344445555542 11234688999999865 26888888
Q ss_pred CCccccccCCCCCchhhhhhhhccccc
Q 000973 541 GRFDREFNFPLPGCEARAEILDIHTRK 567 (1205)
Q Consensus 541 gRf~~~I~~~~P~~eer~~Il~~~l~~ 567 (1205)
||..++.++.|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999776543
No 239
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.97 E-value=2.1e-09 Score=114.87 Aligned_cols=146 Identities=23% Similarity=0.259 Sum_probs=98.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhc---------------------CCeEEEEEecchhhHHHHHHHHHHHHHHHH
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKA---------------------GQKVSFYMRKGADVLSKWVGEAERQLKLLF 470 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~---------------------~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf 470 (1205)
.+..+||+||+|+|||++|+++++.+... ...+.++...+..+ ....++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~-------~~~~i~~i~ 85 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI-------KVDQVRELV 85 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC-------CHHHHHHHH
Confidence 34679999999999999999999997532 01122222222111 123444444
Q ss_pred HHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCcccc
Q 000973 471 EEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDRE 546 (1205)
Q Consensus 471 ~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~ 546 (1205)
..+.. ....||||||+|.|. ...++.|+..|+.. ....++|.+|+.+..+.+++++ |+ ..
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~ 149 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QV 149 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EE
Confidence 44433 335699999999884 23456688888853 3345566666677889999988 77 58
Q ss_pred ccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 547 FNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 547 I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
+.|++|+.++..++|... + ++.+.+..++..+.|
T Consensus 150 ~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGG 183 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCC
Confidence 999999999999998776 2 455666677766655
No 240
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.96 E-value=6.9e-10 Score=141.24 Aligned_cols=137 Identities=13% Similarity=0.204 Sum_probs=101.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC--------CCCCCChhhHHHHhhccccccCCceeeeccchh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFNL 775 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~--------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~ 775 (1205)
+.++|+||||||||++|++||..+ +.++++++...... ..+.|.....+.+.+..+....| ||||||||+
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk 427 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDK 427 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhh
Confidence 469999999999999999999988 78888776554321 12356666667777777665554 889999999
Q ss_pred hHHhHHHHHHHHHHHHHHhc-------------CCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 776 WWENAHEQLRAVLLTLLEEL-------------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 776 l~~~~~~~~~~~ll~lL~~~-------------~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
+..........+|+.+|+.- -+..+|++|||+|.. .|++ +.+-+. .++.|..++.++..+|.
T Consensus 428 ~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~--aLl~R~-~ii~~~~~t~eek~~Ia 502 (784)
T PRK10787 428 MSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPA--PLLDRM-EVIRLSGYTEDEKLNIA 502 (784)
T ss_pred cccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCH--HHhcce-eeeecCCCCHHHHHHHH
Confidence 98654434456777777641 124689999999975 5887 333332 58889999999999999
Q ss_pred HHHHH
Q 000973 843 GRLIE 847 (1205)
Q Consensus 843 ~~~l~ 847 (1205)
+.++.
T Consensus 503 ~~~L~ 507 (784)
T PRK10787 503 KRHLL 507 (784)
T ss_pred HHhhh
Confidence 99986
No 241
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.94 E-value=6.3e-11 Score=112.96 Aligned_cols=53 Identities=30% Similarity=0.423 Sum_probs=45.6
Q ss_pred CcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhhhH
Q 000973 937 NPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRDAV 994 (1205)
Q Consensus 937 ~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~~~ 994 (1205)
.||||+||++||++|.|.++.+|++||+|||.||++||.++ -...|.+|...+
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d-----r~~KA~EM~tNv 115 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE-----RLLKANEMFANA 115 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999884 344555555433
No 242
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=7.5e-10 Score=122.07 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=82.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
+.++|+||||||||||+.|+++++. +..+..+..... ......++.... ...+|+||||+.+.....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~---------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS---------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh---------hhhhHHHHhhcc--cCCEEEEeChhhhcCChH
Confidence 4589999999999999999999851 122222221110 111123333333 347999999998864321
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc---CCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld---~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
....|..+++.+......+||.|+|.++..++ +.+.+++.+..++.+..|+.++|.+|++..+.
T Consensus 109 --~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 109 --WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred --HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 11235555655533333344445555446665 35666666567999999999999999998775
No 243
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.91 E-value=4.8e-09 Score=123.35 Aligned_cols=146 Identities=24% Similarity=0.390 Sum_probs=89.8
Q ss_pred ccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC--CeEEEEEecc----
Q 000973 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFYMRKG---- 451 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~~i~~---- 451 (1205)
++++.+.+...+.+...+. ...+++|+||||||||++|+.+|..+.... ..+.++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5566676766666655432 356899999999999999999999885321 2333444332
Q ss_pred hhhHHHHHHH--H----HHHHHHHHHHHhh--cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC---------
Q 000973 452 ADVLSKWVGE--A----ERQLKLLFEEAQR--NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG--------- 514 (1205)
Q Consensus 452 ~~l~~~~~g~--~----e~~l~~lf~~a~~--~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~--------- 514 (1205)
.+++..+... . ...+..++..|.. ..|+|||||||+..- ...+...++.+|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhccccccccccce
Confidence 2333222100 0 0122334445544 357899999998653 22344444554442
Q ss_pred -----------cccCCcEEEEccccccc----cccccccCCCCccccccCCC
Q 000973 515 -----------LDSRGQVVLIGATNRVD----AIDGALRRPGRFDREFNFPL 551 (1205)
Q Consensus 515 -----------~~~~~~viVI~atn~~~----~ld~aL~r~gRf~~~I~~~~ 551 (1205)
+.-..++.||||+|..+ .+|.||+| ||. .|.+.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 22235799999999987 69999999 994 455543
No 244
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=1.6e-08 Score=114.14 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=115.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE---ecchhhHHHH---HHH------HH---HHHHHHH-HHHhhcC
Q 000973 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM---RKGADVLSKW---VGE------AE---RQLKLLF-EEAQRNQ 477 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~---i~~~~l~~~~---~g~------~e---~~l~~lf-~~a~~~~ 477 (1205)
..++|+||+|+|||++++.++..+......+..+. .+..+++... .|. .. ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998753221111111 1112222111 111 01 1222222 2233456
Q ss_pred CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-cCCcEEEEccccc--ccccc----ccccCCCCccccccCC
Q 000973 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNR--VDAID----GALRRPGRFDREFNFP 550 (1205)
Q Consensus 478 p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-~~~~viVI~atn~--~~~ld----~aL~r~gRf~~~I~~~ 550 (1205)
+.||+|||+|.+.+ ..+..|..+.+... ....+.||.+... ...+. ..+.+ |+...+.++
T Consensus 124 ~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTP-----------ELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCH-----------HHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 77999999998841 11222222222111 1222333333322 11221 12444 777788999
Q ss_pred CCCchhhhhhhhccccccC----CCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEecccee
Q 000973 551 LPGCEARAEILDIHTRKWK----QPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVT 626 (1205)
Q Consensus 551 ~P~~eer~~Il~~~l~~~~----~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~ 626 (1205)
+.+.++..+++...+...+ ..++.+.++.|+..+.|.. +.|..+|..+...+..+... .
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~----------------~ 253 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKR----------------E 253 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCC----------------C
Confidence 9999999999987776433 3577888899999999975 55999999999888775432 3
Q ss_pred eeehhhhhhhccc
Q 000973 627 VEKYHFIEAMSTI 639 (1205)
Q Consensus 627 It~~df~~al~~i 639 (1205)
|+.+++..++..+
T Consensus 254 i~~~~v~~~~~~~ 266 (269)
T TIGR03015 254 IGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHh
Confidence 7777777666544
No 245
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=2.6e-09 Score=122.95 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=84.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
.++||+||||||||++|+++|+++ +.++..+..+.+.. . ..+...+... ..+.|||||||+.+.....+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~-~~~~~~~~~~~~~~---~----~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM-GVNLKITSGPALEK---P----GDLAAILTNL--EEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeccchhcC---c----hhHHHHHHhc--ccCCEEEEehHhhhCHHHHHH
Confidence 469999999999999999999998 55554444332211 1 1233333322 246899999999987654433
Q ss_pred HHHHHHHHHHhcC----------------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 784 LRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 784 ~~~~ll~lL~~~~----------------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
|..+|.... ...++++|++||++ ..|++.+..+|. .++.|.+|+.+++..|++..+.
T Consensus 101 ----l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~-~~l~~~l~sR~~--~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 101 ----LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA-GMLTSPLRDRFG--IILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred ----hhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc-cccCHHHHhhcc--eEEEeCCCCHHHHHHHHHHHHH
Confidence 444443211 12347788888887 667764444443 6788999999999999987765
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.89 E-value=9.7e-09 Score=123.13 Aligned_cols=206 Identities=20% Similarity=0.242 Sum_probs=135.1
Q ss_pred ccccccccCChhHHHHHhhhhhccccccccccc----c-------------------cccCCCcceeeecCCCChhHHHH
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFA----S-------------------YHITPPRGVLLCGPPGTGKTLIA 430 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~----~-------------------~g~~~~~~vLL~GppGtGKT~la 430 (1205)
..-.|.||.|-+.+=..+.-++... .+-+|. + .+-++.+-+|||||||-||||||
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 3457888888887776666555321 222222 0 11233457899999999999999
Q ss_pred HHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHH----hhcCCceEEEeccCCcccccchhhhHHHHHHHH
Q 000973 431 RALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (1205)
Q Consensus 431 ralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a----~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~ 506 (1205)
+.+|+.+| ..++.+++++--+ .......+..+...- ...+|.+|+|||||.-. ...+.
T Consensus 344 HViAkqaG-----YsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vd 405 (877)
T KOG1969|consen 344 HVIAKQAG-----YSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVD 405 (877)
T ss_pred HHHHHhcC-----ceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHH
Confidence 99999996 5677888876432 112222232222211 12568999999998432 33444
Q ss_pred HHHHHhhC--cc----cC----------C---cEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccc
Q 000973 507 TLLALMDG--LD----SR----------G---QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK 567 (1205)
Q Consensus 507 ~Ll~~ld~--~~----~~----------~---~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~ 567 (1205)
.++..+.. .. .. . .--||+.||. ..-|+|+----|..+|.|.+|...-+.+-|+..+..
T Consensus 406 vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 406 VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 55554441 00 00 0 1357778885 456777543358899999999999999999999988
Q ss_pred cCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHH
Q 000973 568 WKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 568 ~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~r 605 (1205)
.+...+...+..|++.|.+ ||++.++.....+..
T Consensus 484 E~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 484 ENMRADSKALNALCELTQN----DIRSCINTLQFLASN 517 (877)
T ss_pred hcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHh
Confidence 8888888888888877665 888888776665554
No 247
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.89 E-value=1e-09 Score=127.28 Aligned_cols=142 Identities=16% Similarity=0.255 Sum_probs=108.1
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCcccc-CCCCCCChhhHHHHhhcccc--------------------
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALL-SDPSAKTPEEALVHIFGEAR-------------------- 761 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~-~~~~~g~se~~~~~lf~~A~-------------------- 761 (1205)
+.++||+||||||||++|++||..+ +.+|+.++...+. .+|.....+..++.+|..|.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4689999999999999999999999 8999999988877 36743367777777766550
Q ss_pred --------------------------------------------------------------------------------
Q 000973 762 -------------------------------------------------------------------------------- 761 (1205)
Q Consensus 762 -------------------------------------------------------------------------------- 761 (1205)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred ---------------------------------------ccCCceeeeccchhhHHh--------HHHHHHHHHHHHHHh
Q 000973 762 ---------------------------------------RTTPSILYIPQFNLWWEN--------AHEQLRAVLLTLLEE 794 (1205)
Q Consensus 762 ---------------------------------------~~~p~ILfiDEid~l~~~--------~~~~~~~~ll~lL~~ 794 (1205)
...-+||||||||+++.. .+.-+.+.||.+|.+
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEG 285 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEG 285 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccC
Confidence 124579999999999843 234467778888887
Q ss_pred c--------CCCCCeEEeccCC----cCCccccCCCccccCCCceeeecCCCccchhhhH----HHHHHH
Q 000973 795 L--------PSHLPILLLGSSS----VPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL----GRLIEA 848 (1205)
Q Consensus 795 ~--------~~~~~v~vIattn----~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~----~~~l~~ 848 (1205)
- -+..+|++||+.- .| .+|-|.+.++|+ .++.+...+.++...|| ..+++.
T Consensus 286 t~v~~k~~~v~T~~ILFI~~GAF~~~kp-~DlIPEl~GR~P--i~v~L~~L~~edL~rILteP~nsLikQ 352 (441)
T TIGR00390 286 STVNTKYGMVKTDHILFIAAGAFQLAKP-SDLIPELQGRFP--IRVELQALTTDDFERILTEPKNSLIKQ 352 (441)
T ss_pred ceeeecceeEECCceeEEecCCcCCCCh-hhccHHHhCccc--eEEECCCCCHHHHHHHhcCChhHHHHH
Confidence 3 1257888888654 33 555567888888 78889999999999998 445543
No 248
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.89 E-value=8.4e-10 Score=128.12 Aligned_cols=186 Identities=18% Similarity=0.245 Sum_probs=128.4
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-CCCCC-ChhhHHHHhhcccc-------------------
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAK-TPEEALVHIFGEAR------------------- 761 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~-~~~~g-~se~~~~~lf~~A~------------------- 761 (1205)
+.++||+||||||||++|++||..+ +.+|+.+++..+.. +| +| +.+..++.+|..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~Gy-vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~ 127 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGY-VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAA 127 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCc-ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 89999999888874 66 55 66677777766660
Q ss_pred --------------------------------------------------------------------------------
Q 000973 762 -------------------------------------------------------------------------------- 761 (1205)
Q Consensus 762 -------------------------------------------------------------------------------- 761 (1205)
T Consensus 128 e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (443)
T PRK05201 128 EERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLG 207 (443)
T ss_pred HHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhC
Confidence
Q ss_pred ---------------------------------------ccCCceeeeccchhhHHhH--------HHHHHHHHHHHHHh
Q 000973 762 ---------------------------------------RTTPSILYIPQFNLWWENA--------HEQLRAVLLTLLEE 794 (1205)
Q Consensus 762 ---------------------------------------~~~p~ILfiDEid~l~~~~--------~~~~~~~ll~lL~~ 794 (1205)
...-+||||||||+++... +.-+.+.||.+|.+
T Consensus 208 ~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG 287 (443)
T PRK05201 208 PKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEG 287 (443)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhccccccccc
Confidence 0134699999999998431 24467778888887
Q ss_pred c--------CCCCCeEEeccCC----cCCccccCCCccccCCCceeeecCCCccchhhhH----HHHHHHHHHHhhccCC
Q 000973 795 L--------PSHLPILLLGSSS----VPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL----GRLIEAAVSVVLEGRS 858 (1205)
Q Consensus 795 ~--------~~~~~v~vIattn----~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~----~~~l~~~~~~~~~~~~ 858 (1205)
- -+..+|++||+-- .| .+|-|.+.++|+ .++.+...+.++...|| ..++..+. ...
T Consensus 288 ~~v~~k~~~i~T~~ILFI~~GAF~~~kp-~DlIPEl~GR~P--i~v~L~~L~~~dL~~ILteP~nsLikQy~-~Lf---- 359 (443)
T PRK05201 288 STVSTKYGMVKTDHILFIASGAFHVSKP-SDLIPELQGRFP--IRVELDALTEEDFVRILTEPKASLIKQYQ-ALL---- 359 (443)
T ss_pred ceeeecceeEECCceeEEecCCcCCCCh-hhccHHHhCccc--eEEECCCCCHHHHHHHhcCChhHHHHHHH-HHH----
Confidence 3 1357888888654 33 556667888888 78889999999999999 44665432 110
Q ss_pred CCCCCCCCCCCCCCCCCccCCCchhhhhHhHHHHHH--------HHHHHHHHHHHHhhhhh
Q 000973 859 KKPQESVSLPELPKVPTVESGPKASELKAKVEAEQH--------ALRRLRMCLRDVCNRML 911 (1205)
Q Consensus 859 ~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~ea~~~--------alrelr~~lr~il~~l~ 911 (1205)
....++| .++..-|+.+++.+.. =.|.|+..+..+|..++
T Consensus 360 --~~egv~L-----------~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 360 --ATEGVTL-----------EFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred --hhcCcEE-----------EEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 0111212 2344445665533332 15777777777766654
No 249
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.88 E-value=1.6e-09 Score=126.15 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=86.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
.++||+||||||||++|+++|+++ +..+..++.+.+. ....+..++... ..++|||||||+.+.....+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l-~~~~~~~~~~~~~-------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~e~ 121 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM-GVNIRITSGPALE-------KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh-CCCeEEEeccccc-------ChHHHHHHHHhc--ccCCEEEEecHhhcchHHHHH
Confidence 479999999999999999999998 5555544433221 112344555443 246899999999987654443
Q ss_pred HHHHHHHHHHhcC----------------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 784 LRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 784 ~~~~ll~lL~~~~----------------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
|..+|+... .-.++++|++||.+ ..|++.+..+|. .++.|++|+.+++.+|++..+.
T Consensus 122 ----l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~-~~l~~~L~sRf~--~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 122 ----LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA-GLLTSPLRDRFG--IVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred ----HHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc-ccCCHHHHHhcC--eeeecCCCCHHHHHHHHHHHHH
Confidence 333443211 01246778888876 667663444453 6788999999999999997775
Q ss_pred H
Q 000973 848 A 848 (1205)
Q Consensus 848 ~ 848 (1205)
.
T Consensus 195 ~ 195 (328)
T PRK00080 195 I 195 (328)
T ss_pred H
Confidence 4
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=98.86 E-value=8.7e-09 Score=130.26 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=116.7
Q ss_pred ceeeec--CCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhc------CCceEEEecc
Q 000973 415 GVLLCG--PPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRN------QPSIIFFDEI 486 (1205)
Q Consensus 415 ~vLL~G--ppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~------~p~VL~IDEi 486 (1205)
+-+..| |++.||||+|++||+++...++...++.+++++..+. ..++.++..+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456678 9999999999999999855555678999999875321 2344444332211 2359999999
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhcccc
Q 000973 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (1205)
Q Consensus 487 d~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~ 566 (1205)
|.|. ...++.|+..|+.. .+++.+|++||.+..+.++|++ || ..|.|++|+.++...+|+..+.
T Consensus 640 D~Lt-----------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 640 DALT-----------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ccCC-----------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 9994 34567788888843 4578889999999999999998 87 7899999999999999998888
Q ss_pred ccCCCCchhHHHHHhhhhhc
Q 000973 567 KWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 567 ~~~~~~~~~~l~~LA~~t~G 586 (1205)
+.+...+.+.+..|+..+.|
T Consensus 704 ~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 704 NEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred hcCCCCCHHHHHHHHHHcCC
Confidence 77777788888888888777
No 251
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=6.2e-09 Score=119.67 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=117.8
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-------------Ce
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------------QK 443 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------~~ 443 (1205)
.|++|+|++.+++.|..++.. | +.+..+||+||+|+||+++|.++|+.+.... ..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 588999999999999998865 1 3456899999999999999999999874321 00
Q ss_pred EEEEEecc------hhhHHHHHHH-----------HHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHH
Q 000973 444 VSFYMRKG------ADVLSKWVGE-----------AERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHN 502 (1205)
Q Consensus 444 ~~~~~i~~------~~l~~~~~g~-----------~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~ 502 (1205)
-.++.+.. ......+.+. .-..++.+...+.. ....|++||++|.|. .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------E 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------H
Confidence 01111111 0000000000 01234555444332 345699999998883 4
Q ss_pred HHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhh
Q 000973 503 SIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAA 582 (1205)
Q Consensus 503 ~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~ 582 (1205)
...+.||..|+... +.++|..|+.++.|-+.+++ |+ ..|.|+.++.++..++|......... . .....++.
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~-~~~~~l~~ 209 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--N-INFPELLA 209 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--h-hHHHHHHH
Confidence 56677999998654 33566677788999999998 87 78999999999999998865432111 1 11345666
Q ss_pred hhhcccc
Q 000973 583 SCVGYCG 589 (1205)
Q Consensus 583 ~t~G~sg 589 (1205)
.+.|-.+
T Consensus 210 ~a~Gs~~ 216 (314)
T PRK07399 210 LAQGSPG 216 (314)
T ss_pred HcCCCHH
Confidence 5555333
No 252
>PHA02244 ATPase-like protein
Probab=98.85 E-value=8.3e-09 Score=118.39 Aligned_cols=123 Identities=25% Similarity=0.337 Sum_probs=76.5
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHH---HHHHHHHHHHHHHhhcCCceEEEeccC
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVG---EAERQLKLLFEEAQRNQPSIIFFDEID 487 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g---~~e~~l~~lf~~a~~~~p~VL~IDEid 487 (1205)
....+|||+||||||||++|++||..++ .+|+.++...-.....| ........-|-.+. ....+||||||+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg-----~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId 190 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALD-----LDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEID 190 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcC
Confidence 3345799999999999999999999975 44555543210001111 00000111122222 234699999999
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhhC---------cccCCcEEEEcccccc-----------ccccccccCCCCccccc
Q 000973 488 GLAPVRSSKQEQIHNSIVSTLLALMDG---------LDSRGQVVLIGATNRV-----------DAIDGALRRPGRFDREF 547 (1205)
Q Consensus 488 ~L~~~r~~~~~~~~~~v~~~Ll~~ld~---------~~~~~~viVI~atn~~-----------~~ld~aL~r~gRf~~~I 547 (1205)
.+. ..++..|...++. .....++.||+|+|.+ ..++++++. || ..|
T Consensus 191 ~a~-----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I 256 (383)
T PHA02244 191 ASI-----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-API 256 (383)
T ss_pred cCC-----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEe
Confidence 774 3344445555541 1223678999999983 357899988 99 468
Q ss_pred cCCCCC
Q 000973 548 NFPLPG 553 (1205)
Q Consensus 548 ~~~~P~ 553 (1205)
+|+.|+
T Consensus 257 ~~dyp~ 262 (383)
T PHA02244 257 EFDYDE 262 (383)
T ss_pred eCCCCc
Confidence 999987
No 253
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.85 E-value=2.1e-09 Score=114.23 Aligned_cols=47 Identities=43% Similarity=0.557 Sum_probs=36.3
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhh
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|.+|+|++.+|..|.-+..- ..|+||+||||||||++|+.+...+-
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999998665432 36999999999999999999997763
No 254
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.1e-08 Score=112.35 Aligned_cols=131 Identities=28% Similarity=0.480 Sum_probs=90.5
Q ss_pred cccc-cCChhHHHHHhhhhhcccccccccccc-----cccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000973 377 SFDD-IGGLSEYIDALKEMVFFPLLYPDFFAS-----YHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 377 ~~~~-i~Gl~~~k~~L~e~v~~pl~~~~~~~~-----~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
-+++ ++|++.+|+.|.=+|... |..+... ..+ ..++|||.||+|||||+||+.||+.+ +++|...+
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL-~KSNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiAD 129 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVEL-SKSNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIAD 129 (408)
T ss_pred HhhhheecchhhhceeeeeehhH--HHHHhccCCCCceee-eeccEEEECCCCCcHHHHHHHHHHHh-----CCCeeecc
Confidence 3455 899999998886666442 2222211 111 24689999999999999999999999 48998888
Q ss_pred chhhH-HHHHHHH-HHHHHHHHHHHh----hcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCc
Q 000973 451 GADVL-SKWVGEA-ERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGL 515 (1205)
Q Consensus 451 ~~~l~-~~~~g~~-e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~ 515 (1205)
+..+. ..|+|+- +..+..++..|. .....||+|||||.++.+..+. .+-...-++..||..+++.
T Consensus 130 ATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 130 ATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88776 3678864 445555665543 2334599999999998554221 1223456888899999874
No 255
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.84 E-value=2.5e-09 Score=104.02 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=55.8
Q ss_pred HhhhhhccccccccccccCC--CCCccchhhccCcchHHHHHhhccCCce-------eeeccccccchhhhcccccccCC
Q 000973 906 VCNRMLYDKRFSAFHYPVTD--EDAPNYRSIIQNPMDLATLLQRVDSGHY-------VTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 906 il~~l~~~k~~~~F~~Pv~~--~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y-------~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
+|.++..++.+|+|..||++ ..+|+|++|||+||||+||+++|.++.| .--..+.+++..++.||..||.-
T Consensus 11 ~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (114)
T cd05494 11 ELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNIY 90 (114)
T ss_pred HHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCccccc
Confidence 44666678899999999999 7999999999999999999999999744 33345556666666666666554
No 256
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=3.3e-09 Score=123.47 Aligned_cols=157 Identities=25% Similarity=0.259 Sum_probs=96.8
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE-EecchhhHHHHH
Q 000973 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY-MRKGADVLSKWV 459 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~-~i~~~~l~~~~~ 459 (1205)
++|.++++..+...+. ...++||.||||||||++|+++|..++.....+.|. .+..+++++.+.
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 5777777766654432 246899999999999999999999997433333332 122234443332
Q ss_pred HHHHHHHHHHHHHHh--hcCC--ceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC----------cccCCcEEEEc
Q 000973 460 GEAERQLKLLFEEAQ--RNQP--SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG----------LDSRGQVVLIG 525 (1205)
Q Consensus 460 g~~e~~l~~lf~~a~--~~~p--~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~viVI~ 525 (1205)
-.....-...|.... .... +|+|+|||+.. ...+++.|+..|+. +.-...++||+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 222110000010000 0011 39999999866 34577778888875 22345789999
Q ss_pred ccccc-----ccccccccCCCCccccccCCCCCchhhhhhhhccc
Q 000973 526 ATNRV-----DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHT 565 (1205)
Q Consensus 526 atn~~-----~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l 565 (1205)
|+|+. ..+++++++ ||...++++.|..++-..++....
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 99953 347899998 998889999995555444443333
No 257
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.83 E-value=3.1e-09 Score=115.37 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=90.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQL 784 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~ 784 (1205)
++||+||||.|||+||..||+++ +.++...+++.+-. .| -+..++..... .+|||||||+.+.+.+.+-
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~leK---~g----DlaaiLt~Le~--~DVLFIDEIHrl~~~vEE~- 122 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALEK---PG----DLAAILTNLEE--GDVLFIDEIHRLSPAVEEV- 122 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHh-cCCeEecccccccC---hh----hHHHHHhcCCc--CCeEEEehhhhcChhHHHH-
Confidence 79999999999999999999999 88888777766643 12 35555555443 3799999999998766554
Q ss_pred HHHHHHHHHhc---------C-------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHH
Q 000973 785 RAVLLTLLEEL---------P-------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (1205)
Q Consensus 785 ~~~ll~lL~~~---------~-------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l 846 (1205)
|--.|++. + .-.++-+|++|-+. -.|..-+..+|. .+..+..++.++...|+..--
T Consensus 123 ---LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~-G~lt~PLrdRFG--i~~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 123 ---LYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA-GMLTNPLRDRFG--IIQRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred ---hhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc-ccccchhHHhcC--CeeeeecCCHHHHHHHHHHHH
Confidence 33334331 0 12366778888776 666653444454 888899999999998887654
No 258
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.83 E-value=1.6e-08 Score=119.89 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=92.1
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe---cchhhHH
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR---KGADVLS 456 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i---~~~~l~~ 456 (1205)
.|+|.+++++.+..++. ...+|||+||||||||++|++|+..+...+ ...++.+ ...++++
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecCcHHhcC
Confidence 37899999888866543 346899999999999999999999875432 1111111 2233333
Q ss_pred HH-HHHHHHHHHHHHHHHhhc---CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-cC-------CcEEEE
Q 000973 457 KW-VGEAERQLKLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SR-------GQVVLI 524 (1205)
Q Consensus 457 ~~-~g~~e~~l~~lf~~a~~~---~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-~~-------~~viVI 524 (1205)
.. +.... -..-|.....+ ...|||+|||..+ ...+++.||..|+.-. .. ...+++
T Consensus 85 ~l~i~~~~--~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 85 PLSIQALK--DEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred cHHHhhhh--hcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 21 00000 01122211111 2349999999766 4567888999885321 11 123445
Q ss_pred cccccccc---ccccccCCCCccccccCCCCCc-hhhhhhhhcc
Q 000973 525 GATNRVDA---IDGALRRPGRFDREFNFPLPGC-EARAEILDIH 564 (1205)
Q Consensus 525 ~atn~~~~---ld~aL~r~gRf~~~I~~~~P~~-eer~~Il~~~ 564 (1205)
+|||.... ..+++.. ||...|.+|+|+. ++..+||...
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 55564221 2247777 8988899999974 5558888653
No 259
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.82 E-value=1.3e-08 Score=117.99 Aligned_cols=153 Identities=23% Similarity=0.243 Sum_probs=101.8
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC------------------
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG------------------ 441 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------------------ 441 (1205)
+++|.+.+...+...+... + ..+..+||+||||+|||++|.++|+.+....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4667777777776655420 1 2223599999999999999999999986432
Q ss_pred -CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc
Q 000973 442 -QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (1205)
Q Consensus 442 -~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~ 516 (1205)
..-.++.++.++.-..- -....++.+...... ...-|++|||+|.|. ....+.|+..++.
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-----------~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhcc--
Confidence 12356666665543211 123344444443332 334699999999883 4567778888884
Q ss_pred cCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhh
Q 000973 517 SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEIL 561 (1205)
Q Consensus 517 ~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il 561 (1205)
...+..+|.+||.++.|-+.+++ |+ ..|.|++|+........
T Consensus 136 p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 45567888889999999889988 77 56888775544444433
No 260
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=1.1e-08 Score=101.65 Aligned_cols=130 Identities=33% Similarity=0.473 Sum_probs=76.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHH--------------HHHHHHHHHHHHHHHHhhcCC
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--------------WVGEAERQLKLLFEEAQRNQP 478 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~--------------~~g~~e~~l~~lf~~a~~~~p 478 (1205)
..+++|+||||||||++++.+|..+..... .++.+++...... ...........++..+....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCC--CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 357999999999999999999999875531 2344444332211 112345566677888887778
Q ss_pred ceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc-cccccccccCCCCccccccCCC
Q 000973 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-VDAIDGALRRPGRFDREFNFPL 551 (1205)
Q Consensus 479 ~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~-~~~ld~aL~r~gRf~~~I~~~~ 551 (1205)
.||||||++.+.............. ............+.+|+++|. ....+..+.. |++..+.+..
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLL 146 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecC
Confidence 8999999998864321110000000 000111122445778888885 2334444444 6666666544
No 261
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.81 E-value=9.3e-09 Score=129.17 Aligned_cols=158 Identities=30% Similarity=0.340 Sum_probs=101.7
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhh-------c---------
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-------A--------- 440 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-------~--------- 440 (1205)
.|..|+|++.++..|.-+...| ...+|||+|++|||||++|++|+..+.. .
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999998886655432 1247999999999999999999988720 0
Q ss_pred --------------CCeEEEEEecchhhHHHHHHHH--HHHH--------HHHHHHHhhcCCceEEEeccCCcccccchh
Q 000973 441 --------------GQKVSFYMRKGADVLSKWVGEA--ERQL--------KLLFEEAQRNQPSIIFFDEIDGLAPVRSSK 496 (1205)
Q Consensus 441 --------------~~~~~~~~i~~~~l~~~~~g~~--e~~l--------~~lf~~a~~~~p~VL~IDEid~L~~~r~~~ 496 (1205)
....+|+.+.+.......+|.. ...+ ..++..+ ...|||||||+.|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 0123455444332222223321 1111 1111122 23499999999883
Q ss_pred hhHHHHHHHHHHHHHhhCcc-----------cCCcEEEEccccccc-cccccccCCCCccccccCCCCC-chhhhhhhhc
Q 000973 497 QEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLPG-CEARAEILDI 563 (1205)
Q Consensus 497 ~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-~ld~aL~r~gRf~~~I~~~~P~-~eer~~Il~~ 563 (1205)
..++..|+..|+.-. ...+++||+++|+.+ .+.++|.. ||...|.++.+. .+++.+|+..
T Consensus 140 -----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 140 -----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred -----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 557777888886321 113589999998643 47788888 999888888774 4667777754
No 262
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=127.95 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=95.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE-ecchhhHHHHH-HH--HHHHHH-HHHHHHhhcCCceEEEecc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM-RKGADVLSKWV-GE--AERQLK-LLFEEAQRNQPSIIFFDEI 486 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~-i~~~~l~~~~~-g~--~e~~l~-~lf~~a~~~~p~VL~IDEi 486 (1205)
-.+++||-|.||+|||+|+.|||+..|....++++.. .+..++++.++ ++ ++-..+ .-|-.|.+.+ ..+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 3467999999999999999999999986544444321 11223333222 11 111111 1133333332 49999999
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHhhCcc------------cCCcEEEEccccccc------cccccccCCCCcccccc
Q 000973 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLD------------SRGQVVLIGATNRVD------AIDGALRRPGRFDREFN 548 (1205)
Q Consensus 487 d~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~------------~~~~viVI~atn~~~------~ld~aL~r~gRf~~~I~ 548 (1205)
. |+ ++.++..|-.+||... ...++.|+||.|+.+ .|+..+.. || .+|+
T Consensus 1621 N-La----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~ 1686 (4600)
T COG5271 1621 N-LA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVK 1686 (4600)
T ss_pred h-hh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEE
Confidence 4 43 6778888888888532 245789999999865 38888888 99 5688
Q ss_pred CCCCCchhhhhhhhcccccc
Q 000973 549 FPLPGCEARAEILDIHTRKW 568 (1205)
Q Consensus 549 ~~~P~~eer~~Il~~~l~~~ 568 (1205)
+...+.++...|...+..+.
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred ecccccchHHHHHHhhCCcc
Confidence 99999999998887766543
No 263
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.80 E-value=4.7e-08 Score=105.85 Aligned_cols=111 Identities=22% Similarity=0.122 Sum_probs=77.7
Q ss_pred CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc-------------cccccccccCCCCcc
Q 000973 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-------------VDAIDGALRRPGRFD 544 (1205)
Q Consensus 478 p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~-------------~~~ld~aL~r~gRf~ 544 (1205)
|.||||||+|.| .-..+..|...++.. -.-+||.++|+ |..+++.|+. |+
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalES~---iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl- 359 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALESP---IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL- 359 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhcCC---CCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-
Confidence 789999999988 234445555555522 22355556665 3346777776 66
Q ss_pred ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHH
Q 000973 545 REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 545 ~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~r 605 (1205)
.+|..-+++.++.++|++..++..++..+++.+..|+.....-+.+...+|+.-|...+-.
T Consensus 360 ~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~ 420 (456)
T KOG1942|consen 360 LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKT 420 (456)
T ss_pred eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHH
Confidence 5677777899999999999999999999999988888876655656555666555554443
No 264
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.80 E-value=4.9e-09 Score=124.33 Aligned_cols=106 Identities=19% Similarity=0.344 Sum_probs=78.2
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-CCCCCChh-hHHHHhhccc----cccCCceeeeccchhh
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTPE-EALVHIFGEA----RRTTPSILYIPQFNLW 776 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~-~~~~g~se-~~~~~lf~~A----~~~~p~ILfiDEid~l 776 (1205)
..++||+||||||||++|+++|..+ +.+|+.+++..+.. +| +|... ..+..++..+ ....++||||||||.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gy-vG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl 185 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGY-VGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKI 185 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCc-ccchHHHHHHHHHHhccccHHHcCCcEEEEechhhh
Confidence 3579999999999999999999998 89999999888764 44 56543 3345554432 2456899999999999
Q ss_pred HHh----------HHHHHHHHHHHHHHhc----C-------CCCCeEEeccCCcC
Q 000973 777 WEN----------AHEQLRAVLLTLLEEL----P-------SHLPILLLGSSSVP 810 (1205)
Q Consensus 777 ~~~----------~~~~~~~~ll~lL~~~----~-------~~~~v~vIattn~~ 810 (1205)
... .+..+.+.|+.+|++- + +..+.++|+|+|-.
T Consensus 186 ~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nil 240 (412)
T PRK05342 186 ARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNIL 240 (412)
T ss_pred ccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCce
Confidence 743 1235778899999752 1 13466788888864
No 265
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.3e-08 Score=118.33 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=105.6
Q ss_pred cccccCC-hhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC--------------
Q 000973 377 SFDDIGG-LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-------------- 441 (1205)
Q Consensus 377 ~~~~i~G-l~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------- 441 (1205)
.|+.|.| ++.++..|+..+.. | ..+..+||+||+|+|||++|+++|+.+....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3677777 88899999888754 1 3455679999999999999999999874321
Q ss_pred -------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHH
Q 000973 442 -------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLA 510 (1205)
Q Consensus 442 -------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~ 510 (1205)
..+.++...+.. -.-..++.+.+.+. ....-|+|||++|.| .....+.||.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~-------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQS-------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEecccccc-------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHH
Confidence 112222222111 01234444444333 233459999999887 3456678999
Q ss_pred HhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhc
Q 000973 511 LMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDI 563 (1205)
Q Consensus 511 ~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~ 563 (1205)
.|+. ....+++|.+|+.+..|.+.+++ |+ ..|+|..|+.++..++|+.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9985 34566777788888899999998 77 6799999999988777753
No 266
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.77 E-value=6e-09 Score=122.84 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=78.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-CCCCCCh-hhHHHHhhccc----cccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTP-EEALVHIFGEA----RRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~-~~~~g~s-e~~~~~lf~~A----~~~~p~ILfiDEid~l~ 777 (1205)
.++||+||||||||++|++||..+ +.+|+.++...+.. +| .|.. +..+..++..+ ....++||||||||++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l-~~pf~~~da~~L~~~gy-vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~ 194 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGY-VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS 194 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc-CCCeEEechhhcccccc-ccccHHHHHHHHHHhCcccHHhcccceEEecccchhc
Confidence 479999999999999999999998 78998888877653 44 5664 44455554432 34567899999999988
Q ss_pred Hh----------HHHHHHHHHHHHHHhcC-----------CCCCeEEeccCCcC
Q 000973 778 EN----------AHEQLRAVLLTLLEELP-----------SHLPILLLGSSSVP 810 (1205)
Q Consensus 778 ~~----------~~~~~~~~ll~lL~~~~-----------~~~~v~vIattn~~ 810 (1205)
.. .+..+.+.|+++|++.. ++.+.++|.|+|-.
T Consensus 195 ~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNil 248 (413)
T TIGR00382 195 RKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNIL 248 (413)
T ss_pred hhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCce
Confidence 52 12357778888886531 24577899999964
No 267
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.77 E-value=1.6e-08 Score=106.21 Aligned_cols=117 Identities=24% Similarity=0.367 Sum_probs=77.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccC
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEID 487 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid 487 (1205)
|..++||+||+|||||.+|++||..+.. +...+++.++++.+.. .++....+..++..+. .....||||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 3457999999999999999999999962 2235788888887765 1111112222221111 1111299999999
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhhCcc---------cCCcEEEEccccccc
Q 000973 488 GLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD 531 (1205)
Q Consensus 488 ~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~viVI~atn~~~ 531 (1205)
...+..+...+.....++..||..|++-. ...+++||+|+|.-.
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99876444445556688899999997432 124789999998643
No 268
>PRK04195 replication factor C large subunit; Provisional
Probab=98.76 E-value=8.8e-09 Score=125.89 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=86.3
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccc------cCCceeeeccchhh
Q 000973 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR------TTPSILYIPQFNLW 776 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~------~~p~ILfiDEid~l 776 (1205)
++.+||+||||||||++|+++|+++ ++.++.++.++... ...+.++...+.. ..+.||+|||+|.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd~r~-------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASDQRT-------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEccccccc-------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 3579999999999999999999998 77888877654321 1223333322221 24679999999998
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 777 WENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
...........|+.++... ...||+++|.+ ..+.. ..++....++.|+.|+..+...+++.++..
T Consensus 111 ~~~~d~~~~~aL~~~l~~~----~~~iIli~n~~-~~~~~--k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 111 HGNEDRGGARAILELIKKA----KQPIILTANDP-YDPSL--RELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred ccccchhHHHHHHHHHHcC----CCCEEEeccCc-cccch--hhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 7533223445566666532 22344566766 34433 234443367889999999999998888754
No 269
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.76 E-value=2.4e-09 Score=130.44 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=89.5
Q ss_pred eeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh--
Q 000973 706 LLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-- 779 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-- 779 (1205)
|+|+|++|||||||++||++++. +..++.+....++..+. ..........|.... ..++||+||+|+.+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~-~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI-NSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES 394 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH
Confidence 89999999999999999999862 34566666655543321 110001111222211 23689999999998754
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcc---ccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~---Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
....++.+|+.+.+. +.. ||.|+|.++.. |++.+.++|.+..+++|..|+.+.|.+||+.++..
T Consensus 395 tqeeLF~l~N~l~e~---gk~--IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 395 TQEEFFHTFNTLHNA---NKQ--IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred HHHHHHHHHHHHHhc---CCC--EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 234455555544422 223 33477776554 44578888888899999999999999999987753
No 270
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.76 E-value=1.5e-08 Score=117.39 Aligned_cols=193 Identities=21% Similarity=0.171 Sum_probs=114.3
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHH--
Q 000973 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW-- 458 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~-- 458 (1205)
|+|....+..+.+.+..- .....+|||+|++||||+++|++|.....+. ..+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~~~~~l~ 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAALSENLLD 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCCChHHHH
Confidence 356666666666555431 1345679999999999999999998776433 3578899987543221
Q ss_pred ---HHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc---------cCC
Q 000973 459 ---VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRG 519 (1205)
Q Consensus 459 ---~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---------~~~ 519 (1205)
+|... .....+|..+. ..+||||||+.|. ..++..|+..|+... ...
T Consensus 68 ~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 68 SELFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HHHhccccccccCcccccCCchhhCC---CCEEEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceecc
Confidence 12110 00112344443 3599999999883 456677777775321 023
Q ss_pred cEEEEccccccc-------cccccccCCCCccccccCCCCCchhh----hhhhhccccc----cC----CCCchhHHHHH
Q 000973 520 QVVLIGATNRVD-------AIDGALRRPGRFDREFNFPLPGCEAR----AEILDIHTRK----WK----QPPSRELKSEL 580 (1205)
Q Consensus 520 ~viVI~atn~~~-------~ld~aL~r~gRf~~~I~~~~P~~eer----~~Il~~~l~~----~~----~~~~~~~l~~L 580 (1205)
++.||++|+..- .+.+.|.. ||. .+.+..|...+| ..++..++.. .+ ..++.+.+..|
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 578888887521 12333433 452 234444444444 3444443332 22 34677777777
Q ss_pred hhhhhcccchhHHHHhHHHHHHH
Q 000973 581 AASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 581 A~~t~G~sgadI~~L~~eA~~~a 603 (1205)
..+.=--+-++|++++..++..+
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHhC
Confidence 76654446788888888776543
No 271
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.75 E-value=1.5e-08 Score=125.71 Aligned_cols=199 Identities=24% Similarity=0.245 Sum_probs=121.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+++.|+|....+..+.+.+... .....+|||+|++|||||++|++|....... ..+|+.++|..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~ 257 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAA 257 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCC
Confidence 4468899999999998888776541 1345689999999999999999999876433 35788999876
Q ss_pred hHHHHH-----HHHHH-------HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----
Q 000973 454 VLSKWV-----GEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---- 517 (1205)
Q Consensus 454 l~~~~~-----g~~e~-------~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---- 517 (1205)
+....+ |.... .....|..+ ...+||||||+.|. ..++..|+..++...-
T Consensus 258 ~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 258 LSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred CCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECC
Confidence 533221 11000 000112222 24599999999884 4466677777753210
Q ss_pred -----CCcEEEEccccccccccccccCCCCcc-------ccccCCCCCch----hhhhhhhcccccc------CCCCchh
Q 000973 518 -----RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCE----ARAEILDIHTRKW------KQPPSRE 575 (1205)
Q Consensus 518 -----~~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~e----er~~Il~~~l~~~------~~~~~~~ 575 (1205)
..++.||++|+.. +...+ ..|+|. ..+.+..|... +...|+..++..+ ...++.+
T Consensus 324 ~~~~~~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~ 400 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPS 400 (534)
T ss_pred CCceEeecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 1247788877652 11111 122331 12334444443 3444555544432 2456778
Q ss_pred HHHHHhhhhhcccchhHHHHhHHHHHH
Q 000973 576 LKSELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 576 ~l~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
.+..|..+.=--+.++|++++..|+..
T Consensus 401 a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 401 AIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 877777765444778888888877653
No 272
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=118.82 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=82.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCcc------ccCCCCCCC--hhhH-HHHhhccccccCCceeeeccch
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPA------LLSDPSAKT--PEEA-LVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~------l~~~~~~g~--se~~-~~~lf~~A~~~~p~ILfiDEid 774 (1205)
+++||-|.||+|||.|..|+|+.. |-.+++|++++ |++.+..++ .|-. ...-|-.|.+. ..-|++||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~t-G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKT-GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHh-cCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhh
Confidence 358999999999999999999987 77788887763 454443333 1111 11223333333 3578899997
Q ss_pred hhHHhHHHHHHHHHHHHHHhc------------CCCCCeEEeccCCcCC-----ccccCCCccccCCCceeeecCCCccc
Q 000973 775 LWWENAHEQLRAVLLTLLEEL------------PSHLPILLLGSSSVPL-----AEVEGDPSTVFPLRSVYQVEKPSTED 837 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~------------~~~~~v~vIattn~~~-----~~Ld~~~~~~f~~r~ii~~~~P~~~e 837 (1205)
. ++..++.-|+.+|+-- .-..+..|.||-|--. ..||...-.+| .++++...+.++
T Consensus 1622 L----aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF---svV~~d~lt~dD 1694 (4600)
T COG5271 1622 L----ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF---SVVKMDGLTTDD 1694 (4600)
T ss_pred h----hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh---heEEecccccch
Confidence 6 4556677788888742 1134666777766321 12333222223 466788888887
Q ss_pred hhhhHHHHH
Q 000973 838 RSLFLGRLI 846 (1205)
Q Consensus 838 R~~i~~~~l 846 (1205)
...|...++
T Consensus 1695 i~~Ia~~~y 1703 (4600)
T COG5271 1695 ITHIANKMY 1703 (4600)
T ss_pred HHHHHHhhC
Confidence 777766654
No 273
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.74 E-value=6.3e-08 Score=116.36 Aligned_cols=235 Identities=17% Similarity=0.207 Sum_probs=149.1
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhh-----cCCeEEEEEecchh
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK-----AGQKVSFYMRKGAD 453 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-----~~~~~~~~~i~~~~ 453 (1205)
+.|.+.+.....|..++...+.. + .....++++|-||||||.+++.|...|.. ......|+.+++-.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~----~----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD----Q----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC----C----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 35778888888887766542211 1 11236899999999999999999998752 23456778888754
Q ss_pred hHH---HH-------HH------HHHHHHHHHHHHH-hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc
Q 000973 454 VLS---KW-------VG------EAERQLKLLFEEA-QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (1205)
Q Consensus 454 l~~---~~-------~g------~~e~~l~~lf~~a-~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~ 516 (1205)
+.+ -| .| .+-..+...|... ....++||+|||+|.|+.. .+.++..|+.|.. .
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr--------~QdVlYn~fdWpt--~ 537 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR--------SQDVLYNIFDWPT--L 537 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc--------cHHHHHHHhcCCc--C
Confidence 432 11 11 1222333334321 2244789999999999853 3567777777655 4
Q ss_pred cCCcEEEEccccccccccccccC--CCCcc-ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchh--
Q 000973 517 SRGQVVLIGATNRVDAIDGALRR--PGRFD-REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD-- 591 (1205)
Q Consensus 517 ~~~~viVI~atn~~~~ld~aL~r--~gRf~-~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgad-- 591 (1205)
...+++||+.+|..+....-|-. ..|++ ..|.|.+++..++.+|+...+... ..+..+.++.+|......+|..
T Consensus 538 ~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHH
Confidence 56788999888886543222210 11443 468899999999999999999887 3445566665666555555543
Q ss_pred HHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCc
Q 000973 592 LKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITP 641 (1205)
Q Consensus 592 I~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~p 641 (1205)
.-.+|+.|+..|-.++.. . + +...-.|+..|+.+|+..+..
T Consensus 617 aldic~RA~Eia~~~~~~----~--k---~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 617 ALDICRRAAEIAEERNVK----G--K---LAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred HHHHHHHHHHHhhhhccc----c--c---ccccceeehHHHHHHHHHHhh
Confidence 334588887777665431 0 0 112235777888888776653
No 274
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.6e-08 Score=110.18 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=63.0
Q ss_pred ceEEEeccCCcccccchhh-hHHHHHHHHHHHHHhhCcc--------cCCcEEEEccc----cccccccccccCCCCccc
Q 000973 479 SIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLD--------SRGQVVLIGAT----NRVDAIDGALRRPGRFDR 545 (1205)
Q Consensus 479 ~VL~IDEid~L~~~r~~~~-~~~~~~v~~~Ll~~ld~~~--------~~~~viVI~at----n~~~~ld~aL~r~gRf~~ 545 (1205)
.|+||||||.++...+.++ +-...-++..||-++++.. ..+++++|++. ..|..|-|.|.- ||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 5999999999997765333 3334567888888887643 23578889876 346777788854 9999
Q ss_pred cccCCCCCchhhhhhhh
Q 000973 546 EFNFPLPGCEARAEILD 562 (1205)
Q Consensus 546 ~I~~~~P~~eer~~Il~ 562 (1205)
.+++...+.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999999984
No 275
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=3.5e-08 Score=121.97 Aligned_cols=207 Identities=13% Similarity=0.148 Sum_probs=115.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCe-EEEE-Eecc
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK-VSFY-MRKG 451 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~-~~~~-~i~~ 451 (1205)
...++++|+|++..+..|+.++..- .++..+.+.++|+||||||||++++++|+.++..... .+.+ ....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 4578999999999999998887541 1122334459999999999999999999988643211 0000 0000
Q ss_pred h----------hhHHHHHHHHHHHHHHHHHHHh----------hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000973 452 A----------DVLSKWVGEAERQLKLLFEEAQ----------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 452 ~----------~l~~~~~g~~e~~l~~lf~~a~----------~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
. .-+..+ ......+..++..+. .....|||||||+.++.. ....+..+|.+
T Consensus 151 ~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr~ 221 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILRW 221 (637)
T ss_pred ccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHHH
Confidence 0 000111 111222333333332 124569999999987632 11233344441
Q ss_pred hhCcccCCcEEEEcccc-ccc--------------cccccccCCCCccccccCCCCCchhhhhhhhccccccCC------
Q 000973 512 MDGLDSRGQVVLIGATN-RVD--------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ------ 570 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn-~~~--------------~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~------ 570 (1205)
+- ...+.+.||++++ .+. .|.++++...|+ .+|.|.+.+.......|+..+.....
T Consensus 222 ~~--~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 222 KY--VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred Hh--hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 11 1133444444333 111 133566642244 46899999999977777666654321
Q ss_pred -CCchhHHHHHhhhhhcccchhHHHHhHHHHHHHH
Q 000973 571 -PPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (1205)
Q Consensus 571 -~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~ 604 (1205)
..+.+.+..|+.. +.+||+.++......+.
T Consensus 299 ~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 299 KVPKKTSVELLCQG----CSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccCCHHHHHHHHHh----CCChHHHHHHHHHHHHh
Confidence 1234566677664 55588887775554443
No 276
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.71 E-value=3.1e-09 Score=127.28 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=83.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChh-hHHHHhhccccccCCceeeeccchhhHHh
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPE-EALVHIFGEARRTTPSILYIPQFNLWWEN 779 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se-~~~~~lf~~A~~~~p~ILfiDEid~l~~~ 779 (1205)
.++|+|++|||||||++++++++. +..++.++...++..+ ..... ..+..+....+ .+.+|+||||+.+...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF-VNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH-HHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 489999999999999999999863 3445555544443221 00000 01111111111 2579999999998754
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc---CCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld---~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.. ....|..+++.+-.....+|| |+|.++..|+ +.+.++|....+++|++|+.++|..|++..+..
T Consensus 215 ~~--~~~~l~~~~n~~~~~~~~iii-ts~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 ER--TQEEFFHTFNALHENGKQIVL-TSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred HH--HHHHHHHHHHHHHHCCCCEEE-ecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 21 122344444443222233444 4554445544 466777765678999999999999999988753
No 277
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.71 E-value=1.7e-08 Score=102.15 Aligned_cols=110 Identities=28% Similarity=0.379 Sum_probs=66.1
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh--HHHHHHHHHHH-H-----HHHHHHHhhcCCceEEEecc
Q 000973 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV--LSKWVGEAERQ-L-----KLLFEEAQRNQPSIIFFDEI 486 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l--~~~~~g~~e~~-l-----~~lf~~a~~~~p~VL~IDEi 486 (1205)
+|||+||||||||++|+.+|+.++ .+++.+.+... ...++|...-. . ...+-.+. ..++|||||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCc
Confidence 589999999999999999999994 33333333221 11222211100 0 00000000 14579999999
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHhhCccc-----------CC------cEEEEccccccc----cccccccCCCCc
Q 000973 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-----------RG------QVVLIGATNRVD----AIDGALRRPGRF 543 (1205)
Q Consensus 487 d~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-----------~~------~viVI~atn~~~----~ld~aL~r~gRf 543 (1205)
+.. ...++..|+..++.-.- .. ++.||+|+|+.. .++++|++ ||
T Consensus 75 n~a-----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRA-----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG-------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccC-----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 765 35677777777764211 11 389999999988 78999988 77
No 278
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=5.6e-08 Score=112.40 Aligned_cols=136 Identities=19% Similarity=0.303 Sum_probs=93.7
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCC-------------------eEEEEEecchhhHHHHHHHHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------KVSFYMRKGADVLSKWVGEAERQLKLLFE 471 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~ 471 (1205)
+.+..+||+||+|+|||++|+++|+.+..... .-.++.+....- ++ .-.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 34567999999999999999999999854210 011222211100 00 011234444444
Q ss_pred HHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccc
Q 000973 472 EAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (1205)
Q Consensus 472 ~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I 547 (1205)
.+. .....|++||++|.| .....+.||..|+. ..+++++|.+|+.++.|.+.+++ |+ ..|
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-eee
Confidence 333 344569999999988 35567789999995 34678888899999999999999 88 569
Q ss_pred cCCCCCchhhhhhhhccc
Q 000973 548 NFPLPGCEARAEILDIHT 565 (1205)
Q Consensus 548 ~~~~P~~eer~~Il~~~l 565 (1205)
.|++|+.++..+.|....
T Consensus 161 ~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eCCCcCHHHHHHHHHHhc
Confidence 999999998888886543
No 279
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.70 E-value=2.8e-08 Score=115.29 Aligned_cols=195 Identities=21% Similarity=0.178 Sum_probs=117.2
Q ss_pred ccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-
Q 000973 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS- 456 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~- 456 (1205)
+++|+|.......+.+.+..- .....+|||+|++||||+++|++|.....+. ..+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALNEN 71 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCCHH
Confidence 457889998888887776541 1345689999999999999999998655322 35788888876532
Q ss_pred ----HHHHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc--c------
Q 000973 457 ----KWVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S------ 517 (1205)
Q Consensus 457 ----~~~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~--~------ 517 (1205)
.++|... ......|..+. ...||||||+.|. ..++..|+..++... .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 1222110 00112333333 3499999999884 456666777775321 1
Q ss_pred -CCcEEEEcccccc-c------cccccccCCCCccccccCCCCCchhh----hhhhhccccc----cC----CCCchhHH
Q 000973 518 -RGQVVLIGATNRV-D------AIDGALRRPGRFDREFNFPLPGCEAR----AEILDIHTRK----WK----QPPSRELK 577 (1205)
Q Consensus 518 -~~~viVI~atn~~-~------~ld~aL~r~gRf~~~I~~~~P~~eer----~~Il~~~l~~----~~----~~~~~~~l 577 (1205)
..++.||++|+.. . .+.+.|.. ||. .+.+..|...+| ..++..++.. ++ ..++.+.+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1247788877652 1 23344443 552 234444544444 3344444322 22 24567777
Q ss_pred HHHhhhhhcccchhHHHHhHHHHHH
Q 000973 578 SELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 578 ~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
..|..+.=--+-++|++++..|+..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 7776654444678888888877653
No 280
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.70 E-value=7.3e-09 Score=129.77 Aligned_cols=101 Identities=29% Similarity=0.451 Sum_probs=89.2
Q ss_pred HHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCc
Q 000973 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNG 980 (1205)
Q Consensus 901 ~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~ 980 (1205)
+.+..++++++.-..+|+|..||+++-+|+||.+|++||||.||.+++..+.|.+.++|.+||++|+.||..||+. .
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~---e 1461 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGA---E 1461 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCc---c
Confidence 4556678888889999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred ceeeechhhhhhhHhhhhhccChh
Q 000973 981 TRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 981 s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
+.+...|..+-.+.+..+.+...+
T Consensus 1462 ~~y~~k~~k~~ev~~~~~~e~~~~ 1485 (1563)
T KOG0008|consen 1462 SAYTKKARKIGEVGLANLLEYIEH 1485 (1563)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888777776544443
No 281
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.70 E-value=1.2e-07 Score=118.03 Aligned_cols=52 Identities=31% Similarity=0.471 Sum_probs=44.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA 440 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (1205)
|..-|++++|+++++..|+.++.. ..+++|+||||||||++++++|+.+...
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 567889999999999988887653 2489999999999999999999998654
No 282
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.69 E-value=4.5e-09 Score=110.30 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=72.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc---cCccccCCCccccCCCCCCChhhHHHHhhccc----cccCCceeeeccchhh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDPSAKTPEEALVHIFGEA----RRTTPSILYIPQFNLW 776 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~---~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A----~~~~p~ILfiDEid~l 776 (1205)
..+||+||+|||||.+|++||..+. ..+++.++++.+..+ +..+..+..++..+ ......||||||||++
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~---~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG---DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH---HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc---chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 3699999999999999999999983 138999998887651 11112233333322 1122359999999998
Q ss_pred HH-------hHHHHHHHHHHHHHHhc---------CCCCCeEEeccCCcC
Q 000973 777 WE-------NAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVP 810 (1205)
Q Consensus 777 ~~-------~~~~~~~~~ll~lL~~~---------~~~~~v~vIattn~~ 810 (1205)
.. .....+.+.|+++|++- -+..+++||+|+|--
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 87 12346677788998862 125789999999975
No 283
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=1.5e-08 Score=121.51 Aligned_cols=126 Identities=23% Similarity=0.313 Sum_probs=84.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhcccc----ccCCceeeeccchhhHHh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEAR----RTTPSILYIPQFNLWWEN 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~----~~~p~ILfiDEid~l~~~ 779 (1205)
+++||+||||||||++|++|++.+ +..|+.++... .....++.++..+. .....||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~-~~~~~~l~a~~--------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT-DAPFEALSAVT--------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeccc--------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 469999999999999999999987 67777766421 11234556666553 224689999999998654
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
..+ .|+..| +....++|.+||..+...+++.+.+++ .++.|.+++.++...+++..+..
T Consensus 108 ~q~----~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR~---~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 108 QQD----ALLPHV---EDGTITLIGATTENPSFEVNPALLSRA---QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred HHH----HHHHHh---hcCcEEEEEeCCCChhhhccHHHhccc---eeeEeCCCCHHHHHHHHHHHHHH
Confidence 433 344444 333344444555555345665333333 57889999999988888887754
No 284
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=4.2e-08 Score=114.14 Aligned_cols=199 Identities=25% Similarity=0.289 Sum_probs=131.4
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
...+..|+|...+...+.+.|..- .....+|||+|.+||||..+|++|.+...+. ..+|+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~--~kPfV~~NCAAl 285 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRR--DKPFVKLNCAAL 285 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCccc--CCCceeeecccc
Confidence 567889999999999998887651 2556789999999999999999999887655 467889998755
Q ss_pred HH-----HHHHHHHHH-------HHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c
Q 000973 455 LS-----KWVGEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S 517 (1205)
Q Consensus 455 ~~-----~~~g~~e~~-------l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~ 517 (1205)
-. ..+|.-... -+.-|+.|.+ .-||+|||..|. -.++..||..|..-. .
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCC-----------HHHHHHHHHHHhhcceeecCC
Confidence 42 233321111 1223444443 389999998773 456667777775321 1
Q ss_pred ----CCcEEEEccccccccccccccCCCCcc-------ccccCCCCCchhhhhhh----hccccc----c---CCCCchh
Q 000973 518 ----RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARAEIL----DIHTRK----W---KQPPSRE 575 (1205)
Q Consensus 518 ----~~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~eer~~Il----~~~l~~----~---~~~~~~~ 575 (1205)
.-+|-||+|||+ .|-.+++. |+|. .++.+..|...+|..=+ ..++.+ + ...++.+
T Consensus 352 ~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 125899999998 44433332 4442 23445556666664422 222222 2 3456777
Q ss_pred HHHHHhhhhhcccchhHHHHhHHHHHHH
Q 000973 576 LKSELAASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 576 ~l~~LA~~t~G~sgadI~~L~~eA~~~a 603 (1205)
.++.|....---+-++|++++..|+..|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 7777776655457789999999999877
No 285
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=3.1e-08 Score=116.86 Aligned_cols=198 Identities=24% Similarity=0.275 Sum_probs=127.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++|+|.......+.+.+.. .......|||.|.+||||.++|++|.+...+. ..+|+.+||+.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~--~~PFIaiNCaA 306 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRA--NGPFIAINCAA 306 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCccc--CCCeEEEeccc
Confidence 568999999999998888876654 23556789999999999999999999987655 47899999965
Q ss_pred hHH-----HHHH----HHH----HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc----
Q 000973 454 VLS-----KWVG----EAE----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---- 516 (1205)
Q Consensus 454 l~~-----~~~g----~~e----~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---- 516 (1205)
+-. ..+| .+. .--..+|+.|..+ -||||||..| ...++..||..|+.-.
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEec
Confidence 432 2222 111 1123466666555 8999999777 4567778888886421
Q ss_pred -c----CCcEEEEccccccccccccccCCCCcc-------ccccCCCCCchhhhhhh----hcccc----ccC---CCCc
Q 000973 517 -S----RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARAEIL----DIHTR----KWK---QPPS 573 (1205)
Q Consensus 517 -~----~~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~eer~~Il----~~~l~----~~~---~~~~ 573 (1205)
+ .-+|-||+|||. .+-.++. .|+|. .++.+..|...+|.+=+ ..++. .++ ..++
T Consensus 373 G~t~~~~vDVRIIAATN~--nL~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNR--NLEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCc--CHHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1 136899999997 2222222 23332 34556677776665533 22222 222 1256
Q ss_pred hhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 574 RELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 574 ~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
++.+..|..+.=--+-++|++++..+..
T Consensus 450 ~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 450 PDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 6666555544322256788888877664
No 286
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=3.2e-09 Score=127.77 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=84.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~- 779 (1205)
.++||||+|||||||++++++++. +..++.++...++..+...-....+.. |.......+.||+|||++.+.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH
Confidence 399999999999999999999852 234455554443322100000001111 22111235789999999988643
Q ss_pred -HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc---CCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 780 -AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 780 -~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld---~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.+..++..|..+.+ ....+|| |++.++..|. +.+.++|.+..++.|.+|+.+.|..|++..+.
T Consensus 211 ~~q~elf~~~n~l~~----~~k~iIi-tsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 211 GVQTELFHTFNELHD----SGKQIVI-CSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HHHHHHHHHHHHHHH----cCCeEEE-ECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 23444444444333 2234444 4444445543 35667777678999999999999999998775
No 287
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.67 E-value=2.5e-08 Score=116.00 Aligned_cols=203 Identities=28% Similarity=0.304 Sum_probs=124.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
.+..+.+|+|-......+++-+.. +. +...+|||+|++||||+++|++|.....+. ...+|+.+||+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~-~~~PFI~~NCa~ 140 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARR-AEAPFIAFNCAA 140 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcc-cCCCEEEEEHHH
Confidence 456788899998888877776643 11 345689999999999999999999555442 468899999987
Q ss_pred hHHH-----HHHHH-------HHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----
Q 000973 454 VLSK-----WVGEA-------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----- 516 (1205)
Q Consensus 454 l~~~-----~~g~~-------e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~----- 516 (1205)
+... .+|.. ...-..+|+.|.++ +||+|||+.|.+ ..+..|+..|+...
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred hCcCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecC
Confidence 6432 22221 12223456666555 999999999853 45566888887521
Q ss_pred ----cCCcEEEEccccc--cccccc--cccCCCCccccccCCCCCchhhhh----hh----hccccccCCCCch---hHH
Q 000973 517 ----SRGQVVLIGATNR--VDAIDG--ALRRPGRFDREFNFPLPGCEARAE----IL----DIHTRKWKQPPSR---ELK 577 (1205)
Q Consensus 517 ----~~~~viVI~atn~--~~~ld~--aL~r~gRf~~~I~~~~P~~eer~~----Il----~~~l~~~~~~~~~---~~l 577 (1205)
...+|.+|+||+- .+.+-. .|.+. ++. +.+.+|...+|.. ++ +.++++.+..... +.+
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1236788888874 222222 33220 343 4445555555532 22 3344444443322 334
Q ss_pred HHHhhhhhcccchhHHHHhHHHHHHHHH
Q 000973 578 SELAASCVGYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 578 ~~LA~~t~G~sgadI~~L~~eA~~~a~r 605 (1205)
..|....---+-++|++++..++..+..
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 4444433223668899999988877644
No 288
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.66 E-value=3.6e-09 Score=128.30 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=84.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhh-HHHHhhccccccCCceeeeccchhhHHh
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEE-ALVHIFGEARRTTPSILYIPQFNLWWEN 779 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~-~~~~lf~~A~~~~p~ILfiDEid~l~~~ 779 (1205)
.++|+||+|||||||++++++++. +..++.++...++..+ ...... ....+....+ .+.||+||||+.+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 489999999999999999999863 2335555544443221 110000 1111111111 4679999999998653
Q ss_pred --HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcc---ccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 780 --AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 780 --~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~---Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
....++..|..+.+. ...+|| |+|.++.. |++.+.++|....+++|.+|+.++|..|++..+..
T Consensus 227 ~~~~~~l~~~~n~l~~~----~~~iii-ts~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 ERTQEEFFHTFNALHEA----GKQIVL-TSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred HHHHHHHHHHHHHHHHC----CCcEEE-ECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 233444444333332 223444 45555455 44566777765678999999999999999988863
No 289
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.66 E-value=1.2e-08 Score=112.94 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=78.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc--CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh--
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-- 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-- 779 (1205)
+.++|+||+|||||||+.++++++.. ..+..+....... ....++..... ..+|+||||+.+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~---------~~~~~~~~~~~--~dlliiDdi~~~~~~~~ 114 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW---------FVPEVLEGMEQ--LSLVCIDNIECIAGDEL 114 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---------hhHHHHHHhhh--CCEEEEeChhhhcCCHH
Confidence 36899999999999999999987521 1122222111110 11122222222 258999999998643
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccc---cCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L---d~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
....++..|+.+++ .+...+|+ |++.++..+ .+.+.+++....++.+.+|+.+++.++++....
T Consensus 115 ~~~~lf~l~n~~~e---~g~~~li~-ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 115 WEMAIFDLYNRILE---SGRTRLLI-TGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHHHHHHHHHHHHH---cCCCeEEE-eCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 23344444444443 22223444 555565663 446777776668999999999999999876554
No 290
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.65 E-value=1.7e-08 Score=113.60 Aligned_cols=130 Identities=19% Similarity=0.171 Sum_probs=81.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCc------cccCCCCCCChhhH-HH--------------------Hhh
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP------ALLSDPSAKTPEEA-LV--------------------HIF 757 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~------~l~~~~~~g~se~~-~~--------------------~lf 757 (1205)
.+||.||||||||++|+++|+.+ +.+++.+++. +++..+. |..... +. .++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYA-GYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhc-ccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 58999999999999999999987 8888877543 3333331 111111 00 111
Q ss_pred ccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhc----CC----------CCCeEEeccCCcCC----ccccCCCc
Q 000973 758 GEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL----PS----------HLPILLLGSSSVPL----AEVEGDPS 819 (1205)
Q Consensus 758 ~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~----~~----------~~~v~vIattn~~~----~~Ld~~~~ 819 (1205)
. |.+ .+.+|+||||+.+.+.. .+.|+.+|++- .. ..++.||+|+|... ..+++ +
T Consensus 101 ~-A~~-~g~~lllDEi~r~~~~~----q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~--a 172 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRSKPET----NNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD--A 172 (262)
T ss_pred H-HHH-cCCEEEEcchhhCCHHH----HHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH--H
Confidence 1 212 34699999999976544 44466666531 11 13667999999651 12333 2
Q ss_pred cccCCCceeeecCCCccchhhhHHHH
Q 000973 820 TVFPLRSVYQVEKPSTEDRSLFLGRL 845 (1205)
Q Consensus 820 ~~f~~r~ii~~~~P~~~eR~~i~~~~ 845 (1205)
.+.+. ..++++.|+.++-.+|++.+
T Consensus 173 L~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 173 LLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 22221 46779999998888888754
No 291
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.65 E-value=6e-08 Score=118.45 Aligned_cols=198 Identities=22% Similarity=0.306 Sum_probs=118.0
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhh------hcCCeEEEEEe
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS------KAGQKVSFYMR 449 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~------~~~~~~~~~~i 449 (1205)
.+|++|+|....+..+++.+... .....+|||+|++||||+++|++|.+.+. ......+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 56889999999999888876541 13456899999999999999999998721 11234689999
Q ss_pred cchhhHHH-----HHHHHHH--------HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc
Q 000973 450 KGADVLSK-----WVGEAER--------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (1205)
Q Consensus 450 ~~~~l~~~-----~~g~~e~--------~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~ 516 (1205)
+|..+... .+|..+. .-..+|+.+.. ..||||||+.|. ..++..|+..|+...
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP-----------LPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC-----------HHHHHHHHhhhhcCe
Confidence 99765322 2221110 11134555443 399999999883 456677888776421
Q ss_pred -----c----CCcEEEEccccccccccccccCCCCcc-------ccccCCCCCchhhhh----hhhccccc----cCCCC
Q 000973 517 -----S----RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARAE----ILDIHTRK----WKQPP 572 (1205)
Q Consensus 517 -----~----~~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~eer~~----Il~~~l~~----~~~~~ 572 (1205)
. .-++.||++|+.. +...+ ..|+|. ..+.+..|...+|.+ ++..++.. .+..+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 0 1246788888762 21111 112332 235556666655543 44444443 34445
Q ss_pred chhHHH-------HHhhhhhcccchhHHHHhHHHHH
Q 000973 573 SRELKS-------ELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 573 ~~~~l~-------~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
+.+.+. .|..+.=--+-++|++++..++.
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 554432 22222212356788888888775
No 292
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.65 E-value=8.3e-09 Score=130.80 Aligned_cols=108 Identities=26% Similarity=0.446 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000973 896 LRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 896 lrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
+..++..++.++..+...+....|..||++.++|||.+||++||||.||+.+++.|.|.++++|..|+.||+.||+.||.
T Consensus 563 l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~ 642 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNA 642 (1051)
T ss_pred CchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhc
Confidence 34566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccChhHH
Q 000973 976 NDYNGTRIVSRGYELRDAVHGMLSQMDPALV 1006 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 1006 (1205)
. ++.++..|..+++.....+.+...+.+
T Consensus 643 ~---dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 643 K---DTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred c---CeehHhhhHHHHhhhhhHHHhcccchh
Confidence 8 667889999999999888876655443
No 293
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.64 E-value=6e-08 Score=118.57 Aligned_cols=200 Identities=22% Similarity=0.272 Sum_probs=118.7
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..+|++|+|....+..+.+.+... .....+|||+|++||||+++|++|.+...+. ..+|+.++|..+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~--~~pfv~inC~~l 274 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRR--DFPFVAINCGAI 274 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcC--CCCEEEeccccC
Confidence 467899999999998888876541 1345689999999999999999999765432 468899998765
Q ss_pred HHHH-----HHHHH--------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----
Q 000973 455 LSKW-----VGEAE--------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---- 517 (1205)
Q Consensus 455 ~~~~-----~g~~e--------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---- 517 (1205)
-... +|..+ ..-..+|+.+.. ..||||||+.|. ..++..|+..|+...-
T Consensus 275 ~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 275 AESLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred ChhHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecC
Confidence 3221 22110 011234554443 389999999883 4566777777763210
Q ss_pred -----CCcEEEEccccccc--cccccccCCC---CccccccCCCCCchhhhh----hhhccccc----cCCCCchhHHHH
Q 000973 518 -----RGQVVLIGATNRVD--AIDGALRRPG---RFDREFNFPLPGCEARAE----ILDIHTRK----WKQPPSRELKSE 579 (1205)
Q Consensus 518 -----~~~viVI~atn~~~--~ld~aL~r~g---Rf~~~I~~~~P~~eer~~----Il~~~l~~----~~~~~~~~~l~~ 579 (1205)
.-++.||++|+..- .+.....+.. |+ ..+.+..|...+|.+ ++..++.. ....++.+.+..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 12356788877521 1222111110 22 134455565555543 34444433 233455555444
Q ss_pred -------HhhhhhcccchhHHHHhHHHHHH
Q 000973 580 -------LAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 580 -------LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
|..+.=--+-++|++++..++..
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 33332223567888888877654
No 294
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.63 E-value=4.3e-08 Score=108.27 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=120.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecch
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~ 452 (1205)
..-.++++++.++++..+.++...+ .-.|+|+|||||||||+.+.+.|..+... +...-+..++++
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 4457788999999999998875442 12289999999999999999999998652 111111122222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-------cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEc
Q 000973 453 DVLSKWVGEAERQLKLLFEEAQR-------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIG 525 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~-------~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~ 525 (1205)
+-.+. ...+.-...|..++. ..+.++++||+|++ ....+++|...++.+. .++.++.
T Consensus 103 d~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t--~n~rF~i 166 (360)
T KOG0990|consen 103 DDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYT--ANTRFAT 166 (360)
T ss_pred CccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhc--cceEEEE
Confidence 21110 111222234444442 24569999999988 3556666777776544 3455556
Q ss_pred cccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 526 ATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 526 atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.+|.+..+.+++++ || ..+.|.+.+......++..++.......+.+....++....|
T Consensus 167 i~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG 224 (360)
T ss_pred eccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH
Confidence 78999999999998 88 457888888888888888888877666666665555544443
No 295
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.63 E-value=1e-08 Score=123.12 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=85.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh--H
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN--A 780 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~--~ 780 (1205)
.++|+|++|+|||||++|+++++. +..++.+....+...+ .......-.+.|.... ....||+||||+.+... .
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChhh
Confidence 489999999999999999999762 3455555544332211 0000000011233222 24679999999998642 4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccc---cCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 781 HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 781 ~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L---d~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
++.++..|..+++. ...+ |.|++.++..| ++.+.++|.+..++.+.+|+.++|..|++..+..
T Consensus 221 qeelf~l~N~l~~~----~k~I-Ilts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 221 QEEFFHTFNSLHTE----GKLI-VISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred HHHHHHHHHHHHHC----CCcE-EEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 45555555555432 2334 44555544544 4567777776789999999999999999987753
No 296
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.62 E-value=8.6e-08 Score=117.99 Aligned_cols=198 Identities=24% Similarity=0.257 Sum_probs=122.7
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
.+.+|+|....+..+.+.+..- .....+|||+|++||||+++|++|.....+. ..+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~ 251 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE 251 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh
Confidence 5778999999998888876541 1445689999999999999999999876543 35788888876532
Q ss_pred H-----HHHHHHH-------HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc--------
Q 000973 457 K-----WVGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------- 516 (1205)
Q Consensus 457 ~-----~~g~~e~-------~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-------- 516 (1205)
. .+|.... .....|..+. ...||||||+.|. ..++..|+..++...
T Consensus 252 ~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 252 SLAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 2 1221110 0011344433 3489999999884 456667777775321
Q ss_pred -cCCcEEEEccccccc--c-----ccccccCCCCccccccCCCCCchhhhh----hhhccccc-------cCCCCchhHH
Q 000973 517 -SRGQVVLIGATNRVD--A-----IDGALRRPGRFDREFNFPLPGCEARAE----ILDIHTRK-------WKQPPSRELK 577 (1205)
Q Consensus 517 -~~~~viVI~atn~~~--~-----ld~aL~r~gRf~~~I~~~~P~~eer~~----Il~~~l~~-------~~~~~~~~~l 577 (1205)
...++.||++|+..- . +...|.. |+ ..+.+..|...+|.+ +++.++.. ....++.+.+
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 012577888887631 1 1222221 23 234455666655543 33333322 1245677777
Q ss_pred HHHhhhhhcccchhHHHHhHHHHHHHH
Q 000973 578 SELAASCVGYCGADLKALCTEAAIRAF 604 (1205)
Q Consensus 578 ~~LA~~t~G~sgadI~~L~~eA~~~a~ 604 (1205)
..|..+.=--+-++|++++..|+..+.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 777666544577899999988876554
No 297
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.9e-07 Score=106.35 Aligned_cols=208 Identities=21% Similarity=0.239 Sum_probs=136.2
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh----
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV---- 454 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l---- 454 (1205)
..+.|.+.....+++++..++ ....+..++++|-||||||.+..-+-..+...+.....++++|..+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 357899999999999987753 3456778999999999999999988777766655555566666532
Q ss_pred --HHHHHHH---------HHHHHHHHHHH-Hhhc-CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcE
Q 000973 455 --LSKWVGE---------AERQLKLLFEE-AQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV 521 (1205)
Q Consensus 455 --~~~~~g~---------~e~~l~~lf~~-a~~~-~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 521 (1205)
+.+..+. ........|.. ..+. .+-||++||+|.|+.. ...++.+|+.|-. ....++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr--------~~~vLy~lFewp~--lp~sr~ 290 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR--------SQTVLYTLFEWPK--LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc--------ccceeeeehhccc--CCccee
Confidence 2222221 11222333333 2222 2669999999999732 2345555554433 335678
Q ss_pred EEEccccccccccccccC----CCCccccccCCCCCchhhhhhhhccccccCCCCc-hhHHHHHhhhhhcccchhHHH--
Q 000973 522 VLIGATNRVDAIDGALRR----PGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS-RELKSELAASCVGYCGADLKA-- 594 (1205)
Q Consensus 522 iVI~atn~~~~ld~aL~r----~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~-~~~l~~LA~~t~G~sgadI~~-- 594 (1205)
++||.+|..+.-|..|-+ .+--...+.|++++.++..+||+..+.......- ...++.+|....|.+|. ++.
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD-lRkaL 369 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD-LRKAL 369 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh-HHHHH
Confidence 999999987765544322 1223467999999999999999988887654332 23557788888887764 443
Q ss_pred -HhHHHHHHHHHH
Q 000973 595 -LCTEAAIRAFRE 606 (1205)
Q Consensus 595 -L~~eA~~~a~rr 606 (1205)
+|+.|...+-..
T Consensus 370 dv~R~aiEI~E~e 382 (529)
T KOG2227|consen 370 DVCRRAIEIAEIE 382 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 466555544443
No 298
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.62 E-value=4.1e-09 Score=103.20 Aligned_cols=113 Identities=30% Similarity=0.317 Sum_probs=57.7
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE-EecchhhHHHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccc
Q 000973 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY-MRKGADVLSKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPV 492 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~-~i~~~~l~~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~ 492 (1205)
||||+|+||+|||++|+++|+.++....++.|. .+..+++++..+-.... ..|.-... --..|||+|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 689999999999999999999997544344332 12222332211111000 00000000 00239999999655
Q ss_pred cchhhhHHHHHHHHHHHHHhhCcc---------cCCcEEEEccccccc-----cccccccCCCCc
Q 000973 493 RSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATNRVD-----AIDGALRRPGRF 543 (1205)
Q Consensus 493 r~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~viVI~atn~~~-----~ld~aL~r~gRf 543 (1205)
..++++.||..|.... -...++||||.|+.+ .|+.+++. ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4567888898886422 124589999999865 37777776 66
No 299
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.62 E-value=2.5e-07 Score=100.19 Aligned_cols=182 Identities=20% Similarity=0.216 Sum_probs=128.2
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-e-----------
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-K----------- 443 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~----------- 443 (1205)
-+++.+.+.++....|+....- ..-.|+++|||+|+||-|.+.+|.+++...|. +
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 4567788888888888776541 22248999999999999999999999854331 1
Q ss_pred ----EEEEEecch---hhHHHHHHHHH-HHHHHHHHHHhhcC---------CceEEEeccCCcccccchhhhHHHHHHHH
Q 000973 444 ----VSFYMRKGA---DVLSKWVGEAE-RQLKLLFEEAQRNQ---------PSIIFFDEIDGLAPVRSSKQEQIHNSIVS 506 (1205)
Q Consensus 444 ----~~~~~i~~~---~l~~~~~g~~e-~~l~~lf~~a~~~~---------p~VL~IDEid~L~~~r~~~~~~~~~~v~~ 506 (1205)
+.+..++.. ++.....|... -.++.++.+..+.+ -.|++|-|+|.| ....+.
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T~dAQ~ 145 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------TRDAQH 145 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------hHHHHH
Confidence 111111110 01111233322 23455555544333 248999999988 456677
Q ss_pred HHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000973 507 TLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 507 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.|...|+.+. +++-+|..+|....|-+++++ |+ ..|.+|.|+.++...++...+.+.++.+..+++..+|+.+.|
T Consensus 146 aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 146 ALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 7888888554 456777788888888899988 77 568999999999999999999999999999988888888765
No 300
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=4.5e-08 Score=120.52 Aligned_cols=137 Identities=16% Similarity=0.219 Sum_probs=87.3
Q ss_pred eeeecCCCCCCCccchhhhhhcc---------cCccccCCCccccCC----------------CCCCChhhHHHHhhccc
Q 000973 706 LLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPALLSD----------------PSAKTPEEALVHIFGEA 760 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~---------~~~~~~l~~~~l~~~----------------~~~g~se~~~~~lf~~A 760 (1205)
|+|+|+||||||++++.++.++. .+.++.|++..+... ...+.+.+.+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 46999999999999999987652 144556665322110 11123345566777654
Q ss_pred c--ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhc-CCCCCeEEeccCCcC--CccccCCCccccCCCceeeecCCCc
Q 000973 761 R--RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL-PSHLPILLLGSSSVP--LAEVEGDPSTVFPLRSVYQVEKPST 835 (1205)
Q Consensus 761 ~--~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~-~~~~~v~vIattn~~--~~~Ld~~~~~~f~~r~ii~~~~P~~ 835 (1205)
. ....+||+|||||.|....++. |..++... .....|+|||++|.. +..|++.+.+++.. ..+.|++++.
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~QDV----LYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTa 938 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKTQKV----LFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKG 938 (1164)
T ss_pred hcccccceEEEeehHhhhCccHHHH----HHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCH
Confidence 2 2345799999999998753322 33333332 234578899999863 13444555555543 3455899999
Q ss_pred cchhhhHHHHHH
Q 000973 836 EDRSLFLGRLIE 847 (1205)
Q Consensus 836 ~eR~~i~~~~l~ 847 (1205)
+++..|++.-+.
T Consensus 939 EQL~dILk~RAe 950 (1164)
T PTZ00112 939 DEIEKIIKERLE 950 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 999999987775
No 301
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=5.4e-08 Score=115.91 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=76.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc------cccC---------CCccccC-CCCCCChhhHHHHhhcccc----ccC
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFP------VHSL---------GLPALLS-DPSAKTPEEALVHIFGEAR----RTT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~------~~~l---------~~~~l~~-~~~~g~se~~~~~lf~~A~----~~~ 764 (1205)
.+||+||+|||||++|+++|+.+.... +... ..++++- +......-..++++...+. ...
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~ 121 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGK 121 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCC
Confidence 489999999999999999999873211 0000 0001110 0000011234555544433 223
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..|+||||+|.+... ..+.|+..|.+-+ ..+++|.+|+.+ ..|++.+.++. .+|.|..++.++...+++.
T Consensus 122 ~KV~IIDEah~Ls~~----A~NALLKtLEEPp--~~viFILaTte~-~kI~~TI~SRC---q~~~f~~ls~~~i~~~L~~ 191 (484)
T PRK14956 122 YKVYIIDEVHMLTDQ----SFNALLKTLEEPP--AHIVFILATTEF-HKIPETILSRC---QDFIFKKVPLSVLQDYSEK 191 (484)
T ss_pred CEEEEEechhhcCHH----HHHHHHHHhhcCC--CceEEEeecCCh-hhccHHHHhhh---heeeecCCCHHHHHHHHHH
Confidence 469999999998653 3455666665533 355555555555 56665333332 4677888888877777777
Q ss_pred HHH
Q 000973 845 LIE 847 (1205)
Q Consensus 845 ~l~ 847 (1205)
++.
T Consensus 192 i~~ 194 (484)
T PRK14956 192 LCK 194 (484)
T ss_pred HHH
Confidence 665
No 302
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=6.3e-08 Score=119.21 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=79.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc------------CCC---ccccC-CCCCCChhhHHHHhhccccc----cC
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS------------LGL---PALLS-DPSAKTPEEALVHIFGEARR----TT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~------------l~~---~~l~~-~~~~g~se~~~~~lf~~A~~----~~ 764 (1205)
.+||+|++|||||++|+++++.+....-.. +.. .+++. +-.....-..+++++..+.. ..
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr 119 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDAR 119 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCC
Confidence 479999999999999999999873110000 000 01110 00001112345566554432 23
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..|+||||+|.|.. ...+.|+..|.+... .+.||.+||.+ ..|.+-+.++. .+|.|..++.++...+|+.
T Consensus 120 ~KVIIIDEah~LT~----~A~NALLKtLEEPP~--~v~FILaTtd~-~KIp~TIrSRC---q~f~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 120 FKVYMIDEVHMLTN----HAFNAMLKTLEEPPP--HVKFILATTDP-QKIPVTVLSRC---LQFNLKQMPAGHIVSHLER 189 (830)
T ss_pred ceEEEEeChhhCCH----HHHHHHHHHHHhcCC--CeEEEEEECCh-hhccchhhhhe---EEEecCCcCHHHHHHHHHH
Confidence 57999999999865 335567777766544 45555555655 45554333333 4677888888888888887
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++..
T Consensus 190 Il~~ 193 (830)
T PRK07003 190 ILGE 193 (830)
T ss_pred HHHH
Confidence 7753
No 303
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.60 E-value=1.1e-07 Score=117.25 Aligned_cols=198 Identities=21% Similarity=0.240 Sum_probs=118.0
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++|+|.......+.+.+.. + ......|||+|++||||+++|+++....... ..+|+.++|+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~----------~-A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~ 265 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK----------L-AMLDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCAS 265 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEecccc
Confidence 567899999999887777665532 0 1234569999999999999999987655322 35788899876
Q ss_pred hHHHH-----HHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc--c--
Q 000973 454 VLSKW-----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--S-- 517 (1205)
Q Consensus 454 l~~~~-----~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~--~-- 517 (1205)
+.... +|... .....+|+.+. ...||||||+.|. ..++..|+..++... .
T Consensus 266 ~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 266 IPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred CCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCC
Confidence 54321 12110 01122344443 3489999999884 345566777775321 1
Q ss_pred -----CCcEEEEcccccc-c-cc-----cccccCCCCccccccCCCCCchhhhh----hhhccc----cccC---CCCch
Q 000973 518 -----RGQVVLIGATNRV-D-AI-----DGALRRPGRFDREFNFPLPGCEARAE----ILDIHT----RKWK---QPPSR 574 (1205)
Q Consensus 518 -----~~~viVI~atn~~-~-~l-----d~aL~r~gRf~~~I~~~~P~~eer~~----Il~~~l----~~~~---~~~~~ 574 (1205)
..++.||++|+.. . .+ .+.|.. |+. ++.+..|...+|.+ ++..++ ...+ ..++.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1246777777652 1 12 222333 442 35555666655542 222332 2232 24677
Q ss_pred hHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 575 ELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 575 ~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
+++..|..+.=--+-++|++++..|+.
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 777777665333366788888877664
No 304
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=7.4e-08 Score=100.89 Aligned_cols=122 Identities=27% Similarity=0.376 Sum_probs=77.6
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHH---
Q 000973 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK--- 457 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~--- 457 (1205)
|+|.+.....+.+.+... ...+.+|||+|++||||+++|++|.+...+. ..+|+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~~~~~~~e 67 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAALPEELLE 67 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTTS-HHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhhhhcchhh
Confidence 466666666666655431 1344789999999999999999999866433 468999999765433
Q ss_pred --HHHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c----CC
Q 000973 458 --WVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S----RG 519 (1205)
Q Consensus 458 --~~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~ 519 (1205)
.+|... .....+|+.|..+ +||||||+.|. ..++..|+..|+.-. . .-
T Consensus 68 ~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 68 SELFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhhhccccccccccccccCCceeeccce---EEeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccc
Confidence 223211 1122566666665 99999999883 557777888876321 1 12
Q ss_pred cEEEEccccc
Q 000973 520 QVVLIGATNR 529 (1205)
Q Consensus 520 ~viVI~atn~ 529 (1205)
++.||++|+.
T Consensus 134 ~~RiI~st~~ 143 (168)
T PF00158_consen 134 DVRIIASTSK 143 (168)
T ss_dssp -EEEEEEESS
T ss_pred cceEEeecCc
Confidence 6888888885
No 305
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=4.7e-08 Score=107.38 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=77.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
..++|+|++|||||++|+++++.+. +.+++.+++..+... ...++..... +.+|||||++.+.....
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~--~~lLvIDdi~~l~~~~~ 107 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA---------DPEVLEGLEQ--ADLVCLDDVEAIAGQPE 107 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh---------HHHHHhhccc--CCEEEEeChhhhcCChH
Confidence 4699999999999999999998762 345555555544321 1223332222 36999999998764321
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc---CCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld---~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
....|..+++.+......+|| |++.++..++ +.+..++....++.+++|+.+++..+++.++.
T Consensus 108 --~~~~L~~~l~~~~~~~~~iIi-ts~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 108 --WQEALFHLYNRVREAGGRLLI-AGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --HHHHHHHHHHHHHHcCCeEEE-ECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 122344444444322233444 4444334433 22333443236788999999999988876654
No 306
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.59 E-value=5.4e-08 Score=114.98 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=86.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc--------CccccCCCccccC---------------CC---CCC-ChhhHHHHh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK--------FPVHSLGLPALLS---------------DP---SAK-TPEEALVHI 756 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~--------~~~~~l~~~~l~~---------------~~---~~g-~se~~~~~l 756 (1205)
+.++|+||||||||++++++++.+.. +.++.+++....+ +. ..| ...+.+..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 120 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL 120 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence 46999999999999999999986521 3455555433211 00 011 112234445
Q ss_pred hcccc-ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcC-CCCCeEEeccCCcCC--ccccCCCccccCCCceeeecC
Q 000973 757 FGEAR-RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP-SHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEK 832 (1205)
Q Consensus 757 f~~A~-~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~-~~~~v~vIattn~~~--~~Ld~~~~~~f~~r~ii~~~~ 832 (1205)
+.... ...+.||+|||+|.+.... ..++..|..+..... ...++.+|+++|.+. ..|++.+..+|. ...++|++
T Consensus 121 ~~~l~~~~~~~vlvIDE~d~L~~~~-~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~-~~~i~f~p 198 (365)
T TIGR02928 121 YKELNERGDSLIIVLDEIDYLVGDD-DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLC-EEEIIFPP 198 (365)
T ss_pred HHHHHhcCCeEEEEECchhhhccCC-cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCC-cceeeeCC
Confidence 54433 2446899999999997322 233333333311111 235788888888772 134443344443 35678999
Q ss_pred CCccchhhhHHHHHH
Q 000973 833 PSTEDRSLFLGRLIE 847 (1205)
Q Consensus 833 P~~~eR~~i~~~~l~ 847 (1205)
++.++...|++..+.
T Consensus 199 ~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 199 YDAEELRDILENRAE 213 (365)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 307
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.59 E-value=5.8e-08 Score=108.00 Aligned_cols=126 Identities=21% Similarity=0.329 Sum_probs=81.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccC--ccccCCCccccCCCCCCChhhHHHHhhcccccc-----CCceeeeccchhh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKF--PVHSLGLPALLSDPSAKTPEEALVHIFGEARRT-----TPSILYIPQFNLW 776 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~--~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~-----~p~ILfiDEid~l 776 (1205)
|.++|.||||||||+||+.|+.....- .|+.++ . .......++.+|+.+++. .--|||||||+.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS--A------t~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS--A------TNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe--c------cccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 579999999999999999999986322 244443 2 122345688899887652 2359999999987
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 777 WENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
-..-++ ++|--++.+.-++|-|||..|--.|- +.+...-.||-+..-.......|+..-+.
T Consensus 235 NksQQD-------~fLP~VE~G~I~lIGATTENPSFqln---~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 235 NKSQQD-------TFLPHVENGDITLIGATTENPSFQLN---AALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhhhhh-------cccceeccCceEEEecccCCCccchh---HHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 654343 34555666666677777777722333 33333124565666666666666665543
No 308
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.59 E-value=9.8e-08 Score=114.01 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=90.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccC----------CC------CCC-ChhhHHHHhhccccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLS----------DP------SAK-TPEEALVHIFGEARR 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~----------~~------~~g-~se~~~~~lf~~A~~ 762 (1205)
+.++|+||||||||++++.+++.+. ++.++.+++....+ .. ..| ..++.+..++.....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999998762 34566666543211 00 011 122333344433332
Q ss_pred -cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcC--CccccCCCccccCCCceeeecCCCccchh
Q 000973 763 -TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVP--LAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 763 -~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~--~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
..+.||+|||+|.+.......++..|+.+++.... .++.||+++|.. ...+++.+.++|. ...++|++++.++..
T Consensus 136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s~~~-~~~i~f~py~~~e~~ 213 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKSVFR-PEEIYFPPYTADEIF 213 (394)
T ss_pred cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHhcCC-cceeecCCCCHHHHH
Confidence 34689999999998733334455556666655543 367777777765 1234443444443 256789999999999
Q ss_pred hhHHHHHHH
Q 000973 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
.|++..+..
T Consensus 214 ~il~~r~~~ 222 (394)
T PRK00411 214 DILKDRVEE 222 (394)
T ss_pred HHHHHHHHh
Confidence 999887753
No 309
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.58 E-value=4.3e-08 Score=113.54 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=83.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccc-cccCCceeeeccchhhHHhHHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEA-RRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A-~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
.+||+||||+|||++|+++++.+ +.+++.++... .. .......+....... ....+.||||||+|.+... .
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~-~~~~~~i~~~~--~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---~ 116 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEV-GAEVLFVNGSD--CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---D 116 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh-CccceEeccCc--cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH---H
Confidence 35669999999999999999987 66677666543 11 111111121111111 0134689999999988322 1
Q ss_pred HHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHH
Q 000973 784 LRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 784 ~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
....|..+|+.... .+.||+|||.+ ..+++.+..++ .++.|+.|+.+++..+++.++..+
T Consensus 117 ~~~~L~~~le~~~~--~~~~Ilt~n~~-~~l~~~l~sR~---~~i~~~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 117 AQRHLRSFMEAYSK--NCSFIITANNK-NGIIEPLRSRC---RVIDFGVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred HHHHHHHHHHhcCC--CceEEEEcCCh-hhchHHHHhhc---eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 23445666766554 44566678876 56665444444 477899999999999998877654
No 310
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.58 E-value=4.8e-08 Score=123.82 Aligned_cols=197 Identities=20% Similarity=0.262 Sum_probs=119.5
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..+|++|+|.......+.+.+..- .....+|||+|++||||+++|++|.+..... ..+|+.++|..+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~ 387 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLY 387 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCC
Confidence 457889999998888777765431 1344579999999999999999999876432 357888888755
Q ss_pred HH-----HHHHHH----HHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc---C----
Q 000973 455 LS-----KWVGEA----ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---R---- 518 (1205)
Q Consensus 455 ~~-----~~~g~~----e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---~---- 518 (1205)
.. .++|.. .......|+.+ ...+||||||+.|. ..++..|+..++.-.- .
T Consensus 388 ~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 388 PDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred ChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 32 222211 00001123322 24599999999884 4566677777753211 0
Q ss_pred --CcEEEEccccccccccccccCCCCcc-------ccccCCCCCchhhh----hhhhcccccc------CCCCchhHHHH
Q 000973 519 --GQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARA----EILDIHTRKW------KQPPSRELKSE 579 (1205)
Q Consensus 519 --~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~eer~----~Il~~~l~~~------~~~~~~~~l~~ 579 (1205)
-++.||++|+.. +.. +...|+|. ..+.+..|...+|. .++..++..+ ...++.+.+..
T Consensus 454 ~~~~~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 156788888762 111 11112331 13445556555553 3444444322 23467788777
Q ss_pred HhhhhhcccchhHHHHhHHHHH
Q 000973 580 LAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 580 LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
|..+.=--+.++|++++..|+.
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHH
Confidence 7776644467888888887765
No 311
>PRK08727 hypothetical protein; Validated
Probab=98.58 E-value=2.2e-08 Score=110.75 Aligned_cols=129 Identities=17% Similarity=0.129 Sum_probs=81.8
Q ss_pred eeeeecCCCCCCCccchhhhhhccc--CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~ 782 (1205)
.++|+|++|||||||+.|+++.+.. ..++.+....+ ...+..++.... ...+|+||||+.+......
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~---------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA---------AGRLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh---------hhhHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 3899999999999999999987522 22222222121 122334444333 3469999999988643221
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc---CCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 783 QLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 783 ~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld---~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
...|..+++..... +.-||.|+|.++..+. +.+.++|....++.|+.|+.+++..|++.+..
T Consensus 112 --~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 112 --EVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred --HHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 12333455544322 3335556666667663 45666666567899999999999999998664
No 312
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.58 E-value=5.4e-08 Score=107.19 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=73.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
..++|+|++|||||+||.++++.+ .+.+++.++...+.. .+.. .....+|+|||++.+.....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~-------------~~~~--~~~~~~liiDdi~~l~~~~~ 107 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL-------------AFDF--DPEAELYAVDDVERLDDAQQ 107 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-------------HHhh--cccCCEEEEeChhhcCchHH
Confidence 359999999999999999999975 234555554333211 1111 12357999999998754333
Q ss_pred HHHHHHHHHHHHhcCCCCC-eEEeccCCcCCcc--ccCCCccccCCCceeeecCCCccchhhhHHHHH
Q 000973 782 EQLRAVLLTLLEELPSHLP-ILLLGSSSVPLAE--VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~-v~vIattn~~~~~--Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l 846 (1205)
..|..+++.+..... ++|+ |++.++.. +.+.+.+++....++.+++|+.+++..+++.+.
T Consensus 108 ----~~L~~~~~~~~~~~~~~vl~-~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 108 ----IALFNLFNRVRAHGQGALLV-AGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ----HHHHHHHHHHHHcCCcEEEE-eCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 335555655543334 4444 44433222 222333455434678888888877777666554
No 313
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.58 E-value=1.4e-08 Score=122.40 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=89.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCC--CChhhHHHHhhccccccCCceeeeccchhhHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSA--KTPEEALVHIFGEARRTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~--g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~ 778 (1205)
.++|+|++|||||||++|+++++. +..++.+...+++..+.. +.....+..+.... ....||+||||+.+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY 220 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC
Confidence 489999999999999999999652 345555555554432210 00001122221222 2457999999998863
Q ss_pred --hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccc---cCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 779 --NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 779 --~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L---d~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
...+.++..|..+.+.- . -||.|+|.++..+ ++.+.++|.+..++.+.+|+.++|.+|++..+..
T Consensus 221 k~~~~e~lf~l~N~~~~~~----k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 221 KEKTNEIFFTIFNNFIEND----K-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred CHHHHHHHHHHHHHHHHcC----C-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 34455555555554322 2 2455677765555 4477888887799999999999999999998864
No 314
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.57 E-value=9.1e-08 Score=99.76 Aligned_cols=138 Identities=25% Similarity=0.299 Sum_probs=88.4
Q ss_pred ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCe------------------E
Q 000973 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK------------------V 444 (1205)
Q Consensus 383 Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~------------------~ 444 (1205)
|++++++.|..++.. -..+..+||+||+|+||+++|.++|+.+...... .
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888888887754 1345668999999999999999999987433211 1
Q ss_pred EEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCc
Q 000973 445 SFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (1205)
Q Consensus 445 ~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 520 (1205)
.++.+....... .-....++.+...+.. ...-|++||++|.| .....+.||..|+. ...+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe--pp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE--PPEN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS--TTTT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC--CCCC
Confidence 122222221100 0012444555444432 33559999999988 46678889999994 4567
Q ss_pred EEEEccccccccccccccCCCCccccccCCC
Q 000973 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (1205)
Q Consensus 521 viVI~atn~~~~ld~aL~r~gRf~~~I~~~~ 551 (1205)
+++|.+|+.+..|-+.+++ |+ ..|.|+.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 8888899999999999999 87 4566554
No 315
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=9e-08 Score=115.69 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=78.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccC-----------------------ccccCCCccccCCCCCCChhhHHHHhhccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~-----------------------~~~~l~~~~l~~~~~~g~se~~~~~lf~~A 760 (1205)
..+||+||||||||++|+++|+.+... .++.++.+ ....-..++++...+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa-------~~~gid~iR~i~~~~ 109 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA-------SNRGIDEIRKIRDAV 109 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc-------ccCCHHHHHHHHHHH
Confidence 358999999999999999999986321 11222111 011123455555544
Q ss_pred ccc----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCcc
Q 000973 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (1205)
Q Consensus 761 ~~~----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~ 836 (1205)
... ...||||||+|.+.... .+.|+..|+...+ .+++|++|+.+ ..+++.+.+++ .+++|.+++.+
T Consensus 110 ~~~p~~~~~kVvIIDE~h~Lt~~a----~~~LLk~LE~p~~--~vv~Ilattn~-~kl~~~L~SR~---~vv~f~~l~~~ 179 (472)
T PRK14962 110 GYRPMEGKYKVYIIDEVHMLTKEA----FNALLKTLEEPPS--HVVFVLATTNL-EKVPPTIISRC---QVIEFRNISDE 179 (472)
T ss_pred hhChhcCCeEEEEEEChHHhHHHH----HHHHHHHHHhCCC--cEEEEEEeCCh-HhhhHHHhcCc---EEEEECCccHH
Confidence 322 34699999999986432 3446666665443 34444444444 56666343333 58889999999
Q ss_pred chhhhHHHHHH
Q 000973 837 DRSLFLGRLIE 847 (1205)
Q Consensus 837 eR~~i~~~~l~ 847 (1205)
+...+++..+.
T Consensus 180 el~~~L~~i~~ 190 (472)
T PRK14962 180 LIIKRLQEVAE 190 (472)
T ss_pred HHHHHHHHHHH
Confidence 98888777664
No 316
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.57 E-value=6.7e-09 Score=113.61 Aligned_cols=138 Identities=22% Similarity=0.310 Sum_probs=80.9
Q ss_pred eeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 706 LLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
++|+|++|+|||||.+|+++++. +..++.++..++...+...-....+..+....+ ...+|+||+++.+....
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~- 113 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ- 113 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH-
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch-
Confidence 88999999999999999998752 334444443333221100000001112222222 34799999999987542
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC---CCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~---~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.....|..+++.+......+|| |++.+|..|.. .+.+++.+..++.+..|+.++|..|++.....
T Consensus 114 -~~q~~lf~l~n~~~~~~k~li~-ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 114 -RTQEELFHLFNRLIESGKQLIL-TSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp -HHHHHHHHHHHHHHHTTSEEEE-EESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhCCeEEE-EeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 2333445555554333344444 55555566654 56677777799999999999999999998864
No 317
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=1.2e-07 Score=103.88 Aligned_cols=183 Identities=23% Similarity=0.312 Sum_probs=96.6
Q ss_pred CChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe-cc--hhhHHHH
Q 000973 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR-KG--ADVLSKW 458 (1205)
Q Consensus 382 ~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i-~~--~~l~~~~ 458 (1205)
+|++..++.|.+++.. .+...++|+||.|+|||+|++.+...+...+..+.++.. .. .......
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 6888888888886643 345689999999999999999999988432211111111 00 0000010
Q ss_pred -------------H-----------------HHHHHHHHHHHHHHhhcC-CceEEEeccCCcc-cccchhhhHHHHHHHH
Q 000973 459 -------------V-----------------GEAERQLKLLFEEAQRNQ-PSIIFFDEIDGLA-PVRSSKQEQIHNSIVS 506 (1205)
Q Consensus 459 -------------~-----------------g~~e~~l~~lf~~a~~~~-p~VL~IDEid~L~-~~r~~~~~~~~~~v~~ 506 (1205)
. ......+..++..+.... ..||+|||++.+. ... . ....+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~----~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E----DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T----THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c----hHHHHH
Confidence 1 112334455555554432 4799999999997 211 1 234555
Q ss_pred HHHHHhhCcccCCcEEEEccccccccc------cccccCCCCccccccCCCCCchhhhhhhhccccccCCCC--chhHHH
Q 000973 507 TLLALMDGLDSRGQVVLIGATNRVDAI------DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPP--SRELKS 578 (1205)
Q Consensus 507 ~Ll~~ld~~~~~~~viVI~atn~~~~l------d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~--~~~~l~ 578 (1205)
.|...++......++.+|.++...... ...+. +|+.. +.+++.+.++..+++...+... ..+ ++..++
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 218 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIE 218 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHH
Confidence 566666653344444444333322111 12232 36766 9999999999999999877665 433 677778
Q ss_pred HHhhhhhcc
Q 000973 579 ELAASCVGY 587 (1205)
Q Consensus 579 ~LA~~t~G~ 587 (1205)
.+...+.|.
T Consensus 219 ~i~~~~gG~ 227 (234)
T PF01637_consen 219 EIYSLTGGN 227 (234)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHhCCC
Confidence 888887774
No 318
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.56 E-value=1.5e-07 Score=120.10 Aligned_cols=199 Identities=25% Similarity=0.270 Sum_probs=120.4
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~ 455 (1205)
..|++|+|....+..+.+.+..- .....+|||+|++|||||++|++|....... ..+|+.++|..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~ 439 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP 439 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC
Confidence 57889999999988887766541 1334689999999999999999999876543 3567777776543
Q ss_pred H-----HHHHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-------
Q 000973 456 S-----KWVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (1205)
Q Consensus 456 ~-----~~~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~------- 516 (1205)
. ..+|... ......|+.+. ..+||||||+.|. ..++..|+..|+...
T Consensus 440 ~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 440 AGLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCC
Confidence 2 2222110 01112344333 3599999999883 456667777775321
Q ss_pred --cCCcEEEEccccccc--cccccccCCC---CccccccCCCCCchhhhh----hhhccccc----cC---CCCchhHHH
Q 000973 517 --SRGQVVLIGATNRVD--AIDGALRRPG---RFDREFNFPLPGCEARAE----ILDIHTRK----WK---QPPSRELKS 578 (1205)
Q Consensus 517 --~~~~viVI~atn~~~--~ld~aL~r~g---Rf~~~I~~~~P~~eer~~----Il~~~l~~----~~---~~~~~~~l~ 578 (1205)
...++.||++|+..- .+.....+.. |+ ..+.+..|...+|.+ +++.++.+ ++ ..++.+.+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 013577888887631 1222111110 22 134455666655544 34443332 22 135677777
Q ss_pred HHhhhhhcccchhHHHHhHHHHHH
Q 000973 579 ELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 579 ~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
.|..+.=--+-++|++++..|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 776654444678899998888754
No 319
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=5.1e-08 Score=118.65 Aligned_cols=134 Identities=13% Similarity=0.231 Sum_probs=78.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccC-----------ccc------cCCC---ccccC-CCCCCChhhHHHHhhcccc--
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKF-----------PVH------SLGL---PALLS-DPSAKTPEEALVHIFGEAR-- 761 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~-----------~~~------~l~~---~~l~~-~~~~g~se~~~~~lf~~A~-- 761 (1205)
.+||+|++|||||++|+++++.+... ++. .+.. .+++. +-.....-..++++.+.+.
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~ 119 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA 119 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc
Confidence 47999999999999999999987320 000 0000 01110 0000111234566655543
Q ss_pred --ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000973 762 --RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 762 --~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
.....|+||||+|.+... ..+.|+..|++-.. ..+||+ +|+.+ ..|.+-+.++. .+|.|..++.++..
T Consensus 120 P~~gr~KViIIDEah~Ls~~----AaNALLKTLEEPP~-~v~FIL-aTtep-~kLlpTIrSRC---q~f~f~~ls~eei~ 189 (700)
T PRK12323 120 PTAGRFKVYMIDEVHMLTNH----AFNAMLKTLEEPPE-HVKFIL-ATTDP-QKIPVTVLSRC---LQFNLKQMPPGHIV 189 (700)
T ss_pred hhcCCceEEEEEChHhcCHH----HHHHHHHhhccCCC-CceEEE-EeCCh-HhhhhHHHHHH---HhcccCCCChHHHH
Confidence 233579999999998653 34556666655433 334444 45545 45555333333 46778899988888
Q ss_pred hhHHHHHHH
Q 000973 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
..++.++..
T Consensus 190 ~~L~~Il~~ 198 (700)
T PRK12323 190 SHLDAILGE 198 (700)
T ss_pred HHHHHHHHH
Confidence 888877753
No 320
>PLN03025 replication factor C subunit; Provisional
Probab=98.55 E-value=4.4e-08 Score=113.55 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccC----ccccCCCccccCCCCCCChhhHHHHhhc---ccc----ccCCceeeecc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKF----PVHSLGLPALLSDPSAKTPEEALVHIFG---EAR----RTTPSILYIPQ 772 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~----~~~~l~~~~l~~~~~~g~se~~~~~lf~---~A~----~~~p~ILfiDE 772 (1205)
+++||+||||||||++|.++|+++.+- .++.++.++..+ -..++.+.. ... ...+.||+|||
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~-------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE 107 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG-------IDVVRNKIKMFAQKKVTLPPGRHKIVILDE 107 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc-------HHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence 479999999999999999999986332 233444332211 012232211 111 12357999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 773 id~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
+|.+....+ +.|+..|+....... || .++|.. ..+.+.+.++. .++.|..|+.++....++.++.+
T Consensus 108 ~d~lt~~aq----~aL~~~lE~~~~~t~-~i-l~~n~~-~~i~~~L~SRc---~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 108 ADSMTSGAQ----QALRRTMEIYSNTTR-FA-LACNTS-SKIIEPIQSRC---AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred hhhcCHHHH----HHHHHHHhcccCCce-EE-EEeCCc-cccchhHHHhh---hcccCCCCCHHHHHHHHHHHHHH
Confidence 999876544 445666655444322 33 345554 33333222222 57889999999988888877754
No 321
>PRK05642 DNA replication initiation factor; Validated
Probab=98.54 E-value=4.7e-08 Score=108.17 Aligned_cols=128 Identities=24% Similarity=0.281 Sum_probs=82.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~ 782 (1205)
.++|+|++|||||||++|+++++. +..++.++..+++.. ...++...+. ..+|+||+++.+.....
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~---------~~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR---------GPELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh---------hHHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 589999999999999999998752 334555554444421 1122222222 25899999998764321
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeccCCcCCccc---cCCCccccCCCceeeecCCCccchhhhHHHHH
Q 000973 783 QLRAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (1205)
Q Consensus 783 ~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L---d~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l 846 (1205)
....|..+++.+......+||+++..| ..+ .+.+.+++.+..++.+..|+.++|..+++...
T Consensus 115 -~~~~Lf~l~n~~~~~g~~ilits~~~p-~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 115 -WEEALFHLFNRLRDSGRRLLLAASKSP-RELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred -HHHHHHHHHHHHHhcCCEEEEeCCCCH-HHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 123355555554433455566555444 443 34677777666889999999999999998644
No 322
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.54 E-value=6.4e-08 Score=122.03 Aligned_cols=125 Identities=22% Similarity=0.321 Sum_probs=80.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhcccc-----ccCCceeeeccchhhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEAR-----RTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~-----~~~p~ILfiDEid~l~~ 778 (1205)
+++||+||||||||++|+++++.+ +.+|+.++... . + ...++.++..+. .....||||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~-~~~f~~lna~~--~----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT-RAHFSSLNAVL--A----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-cCcceeehhhh--h----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 479999999999999999999987 56676665321 1 1 122333333321 12356999999999875
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEec-cCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 779 NAHEQLRAVLLTLLEELPSHLPILLLG-SSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 779 ~~~~~~~~~ll~lL~~~~~~~~v~vIa-ttn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
..++. |+.. ++.. .+++|+ ||..+...+++.+.++ ..+|.|++++.+++..|++.++..
T Consensus 124 ~qQda----LL~~---lE~g-~IiLI~aTTenp~~~l~~aL~SR---~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 124 AQQDA----LLPW---VENG-TITLIGATTENPYFEVNKALVSR---SRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred HHHHH----HHHH---hcCc-eEEEEEecCCChHhhhhhHhhcc---ccceecCCCCHHHHHHHHHHHHHH
Confidence 44433 3333 3333 455554 4544434455533332 257889999999999999988864
No 323
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=1.1e-07 Score=119.05 Aligned_cols=141 Identities=17% Similarity=0.192 Sum_probs=81.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc---------cCccccCCCccccCC------CCCCChhh----HHHHhhc------
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPALLSD------PSAKTPEE----ALVHIFG------ 758 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~---------~~~~~~l~~~~l~~~------~~~g~se~----~~~~lf~------ 758 (1205)
..+||+||||||||++|+++++... ..+|+.+++..+-.+ ...|.... .....+.
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 4699999999999999999987541 346777776543100 00111100 0011110
Q ss_pred ----cccccCCceeeeccchhhHHhHHHHHHHHHHHHH----Hh----------------cC--CCCCeEEec-cCCcCC
Q 000973 759 ----EARRTTPSILYIPQFNLWWENAHEQLRAVLLTLL----EE----------------LP--SHLPILLLG-SSSVPL 811 (1205)
Q Consensus 759 ----~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL----~~----------------~~--~~~~v~vIa-ttn~~~ 811 (1205)
.......+||||||++.+....+..++..|..-- .. +. ....+++|+ ||+.+
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~- 334 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP- 334 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc-
Confidence 1112345799999999988766666555443210 00 00 112345554 55554
Q ss_pred ccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 812 AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 812 ~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
..+++.+..++ ..+.|++++.++...|++..+..
T Consensus 335 ~~l~~aLrSR~---~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 335 EEINPALRSRC---AEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred cccCHHHHhce---eEEEeCCCCHHHHHHHHHHHHHH
Confidence 66776433333 35678888999999999987753
No 324
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.53 E-value=1.3e-07 Score=94.07 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=70.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccC--ccccCCCccccCC-------------CCCCChhhHHHHhhccccccCCcee
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKF--PVHSLGLPALLSD-------------PSAKTPEEALVHIFGEARRTTPSIL 768 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~--~~~~l~~~~l~~~-------------~~~g~se~~~~~lf~~A~~~~p~IL 768 (1205)
..++|+||||||||++++++++.+... .++.++....... ............++..|+...++||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999998544 4677666543221 1123445667788888888888999
Q ss_pred eeccchhhHHhHHHHHHHHH--HHHHHhcCCCCCeEEeccCCc
Q 000973 769 YIPQFNLWWENAHEQLRAVL--LTLLEELPSHLPILLLGSSSV 809 (1205)
Q Consensus 769 fiDEid~l~~~~~~~~~~~l--l~lL~~~~~~~~v~vIattn~ 809 (1205)
||||++.+............ ............+.+|+++|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 99999998854333221110 011122233456778888884
No 325
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.7e-07 Score=105.02 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=101.2
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcC-------------------CeEEEEEecchhh-HHHHHHHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-------------------QKVSFYMRKGADV-LSKWVGEAERQLKLLF 470 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------------~~~~~~~i~~~~l-~~~~~g~~e~~l~~lf 470 (1205)
+.+..+||+||+|+||+++|.++|+.+.... ..-.++.+....- ....+.+.......+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 4456799999999999999999999874321 0111222211100 0011233333333333
Q ss_pred HHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCC
Q 000973 471 EEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (1205)
Q Consensus 471 ~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~ 550 (1205)
.....+..-|+|||++|.| .....+.||..|+. ...++++|.+|+.++.|.+.+++ |+. .+.|+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~ 165 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYLA 165 (334)
T ss_pred hccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccCC
Confidence 3333445569999999988 45677889999994 56678888899999999999999 884 68999
Q ss_pred CCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000973 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 551 ~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
+|+.++..+.|.... + .+.+....++..+.|-.
T Consensus 166 ~~~~~~~~~~L~~~~---~--~~~~~a~~~~~la~G~~ 198 (334)
T PRK07993 166 PPPEQYALTWLSREV---T--MSQDALLAALRLSAGAP 198 (334)
T ss_pred CCCHHHHHHHHHHcc---C--CCHHHHHHHHHHcCCCH
Confidence 999888877775321 1 22333344555555533
No 326
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-07 Score=111.12 Aligned_cols=198 Identities=25% Similarity=0.315 Sum_probs=126.1
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~ 455 (1205)
..+..|+|.......|.+.+.. . ......|||+|++||||.++|++|.....+. ..+|+.+||..+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------v-A~s~a~VLI~GESGtGKElvAr~IH~~S~R~--~~PFVavNcaAip 204 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------V-APSDASVLITGESGTGKELVARAIHQASPRA--KGPFIAVNCAAIP 204 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCCcHHHHHHHHHhhCccc--CCCceeeecccCC
Confidence 3567899999999999887754 1 2445689999999999999999999887654 3689999986543
Q ss_pred H-----HHHHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c-
Q 000973 456 S-----KWVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S- 517 (1205)
Q Consensus 456 ~-----~~~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~- 517 (1205)
. ..+|... ..-...|+.|.++ .||||||..|. -.++..||..|..-. .
T Consensus 205 ~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 205 ENLLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCC
Confidence 2 2333211 1112356666555 99999998773 557777888876321 1
Q ss_pred ---CCcEEEEccccccccccccccCCCCcc-------ccccCCCCCchhhhhhh----hccccc----c---CCCCchhH
Q 000973 518 ---RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARAEIL----DIHTRK----W---KQPPSREL 576 (1205)
Q Consensus 518 ---~~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~eer~~Il----~~~l~~----~---~~~~~~~~ 576 (1205)
.-+|-||++||. .|...+. .|+|. .++.+..|...+|.+=+ .+++.+ + ...++.+.
T Consensus 271 ~~i~vdvRiIaaT~~--dL~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNR--DLEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCc--CHHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 125889999987 2222221 13332 45667778777776533 333322 2 22355555
Q ss_pred HHHHhhhhhcccchhHHHHhHHHHHHH
Q 000973 577 KSELAASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 577 l~~LA~~t~G~sgadI~~L~~eA~~~a 603 (1205)
+..|..+.==-+-++|+|++..++..+
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 555544332235678888887776543
No 327
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=5.3e-07 Score=103.66 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=92.8
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCC-------------------eEEEEEecchhhHHHHHHHHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------KVSFYMRKGADVLSKWVGEAERQLKLLFE 471 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~ 471 (1205)
..+..+||+||.|+||+++|+++|+.+..... .-.|+.+...+ ++. -.-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 34567899999999999999999998754210 11122221110 000 12334444443
Q ss_pred HH----hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccc
Q 000973 472 EA----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (1205)
Q Consensus 472 ~a----~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I 547 (1205)
.+ ..+..-|++||++|.| .....+.||..|+. ...++++|.+|+.++.|.+.+++ |+ ..+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 33 3344569999999988 35567789999994 56678888889989999999998 88 678
Q ss_pred cCCCCCchhhhhhhhcc
Q 000973 548 NFPLPGCEARAEILDIH 564 (1205)
Q Consensus 548 ~~~~P~~eer~~Il~~~ 564 (1205)
.|++|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999998888777654
No 328
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=1.4e-06 Score=97.76 Aligned_cols=208 Identities=21% Similarity=0.256 Sum_probs=114.9
Q ss_pred CChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc----CCeEEEEEecch-----
Q 000973 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMRKGA----- 452 (1205)
Q Consensus 382 ~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i~~~----- 452 (1205)
+|...+.+.|..+-.+ +.+|. .....++||+|++|.|||++++..+...... ...++++.+...
T Consensus 37 IgY~~A~~~L~~L~~L-l~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKEALDRLEEL-LEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHHHHHHHHHH-HhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 5666555554443332 22222 1234579999999999999999998664221 123444444431
Q ss_pred -hhHHHHH---H-------HHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCc-
Q 000973 453 -DVLSKWV---G-------EAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ- 520 (1205)
Q Consensus 453 -~l~~~~~---g-------~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~- 520 (1205)
.|..... | ........++...+..+.-+|+|||||.++.... .-+..+++.+..+.+.-+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~--------~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY--------RKQREFLNALKFLGNELQI 181 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH--------HHHHHHHHHHHHHhhccCC
Confidence 1221111 1 1122223334445556677999999999753211 112334444444433334
Q ss_pred -EEEEcccccccc--ccccccCCCCccccccCCCCCc-hhhhhhhhccccccCC-----CCchhHHHHHhhhhhcccchh
Q 000973 521 -VVLIGATNRVDA--IDGALRRPGRFDREFNFPLPGC-EARAEILDIHTRKWKQ-----PPSRELKSELAASCVGYCGAD 591 (1205)
Q Consensus 521 -viVI~atn~~~~--ld~aL~r~gRf~~~I~~~~P~~-eer~~Il~~~l~~~~~-----~~~~~~l~~LA~~t~G~sgad 591 (1205)
++.+|+..-... -|+.|.+ ||. .+.+|.... ++...+|..+-..+.+ -.+.++...|-..+.|.. ++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~ 257 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GE 257 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HH
Confidence 444444322222 4677877 994 566666543 4455566554443322 223455567777777755 46
Q ss_pred HHHHhHHHHHHHHHHhC
Q 000973 592 LKALCTEAAIRAFREKY 608 (1205)
Q Consensus 592 I~~L~~eA~~~a~rr~~ 608 (1205)
+..++..|+..|++...
T Consensus 258 l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 88889999999988654
No 329
>PRK08116 hypothetical protein; Validated
Probab=98.51 E-value=1.8e-07 Score=105.40 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=62.4
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH----HHHHHHHHHHHhhcCCceEEEeccCC
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA----ERQLKLLFEEAQRNQPSIIFFDEIDG 488 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~----e~~l~~lf~~a~~~~p~VL~IDEid~ 488 (1205)
..+++|+|++|||||+||.++|+.+...+.. ++.++..+++..+.... ......++.... ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~--v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVP--VIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 4579999999999999999999999766544 45556666665443221 111223333332 235999999964
Q ss_pred cccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 489 LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 489 L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.-. ....+..|+.+++.....+.. +|.|||.
T Consensus 190 e~~---------t~~~~~~l~~iin~r~~~~~~-~IiTsN~ 220 (268)
T PRK08116 190 ERD---------TEWAREKVYNIIDSRYRKGLP-TIVTTNL 220 (268)
T ss_pred CCC---------CHHHHHHHHHHHHHHHHCCCC-EEEECCC
Confidence 321 123345566666654444433 4445655
No 330
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.51 E-value=1.9e-07 Score=113.36 Aligned_cols=149 Identities=23% Similarity=0.334 Sum_probs=88.0
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeE-----------
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV----------- 444 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~----------- 444 (1205)
..|.+|.|+..++..|.-.+ ....+++|+||||||||++++.++..+.......
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47899999999877765433 2346899999999999999999997653211111
Q ss_pred ------------EEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHh
Q 000973 445 ------------SFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (1205)
Q Consensus 445 ------------~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~l 512 (1205)
+|.....+......+|.....-...+..|. ..||||||++.| ...++..|+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 111111110001111111001111233332 349999999877 346677777777
Q ss_pred hCcc-----------cCCcEEEEccccccc-----------------------cccccccCCCCccccccCCCCCch
Q 000973 513 DGLD-----------SRGQVVLIGATNRVD-----------------------AIDGALRRPGRFDREFNFPLPGCE 555 (1205)
Q Consensus 513 d~~~-----------~~~~viVI~atn~~~-----------------------~ld~aL~r~gRf~~~I~~~~P~~e 555 (1205)
+.-. ...++.+|+++|+.. .|...|+. ||+..+.++.++..
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 5321 124689999999731 25556666 77777777766543
No 331
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.51 E-value=8.8e-08 Score=96.18 Aligned_cols=103 Identities=28% Similarity=0.394 Sum_probs=62.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhH--HHHhhccccccCCceeeeccchhhHHh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEA--LVHIFGEARRTTPSILYIPQFNLWWEN 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~--~~~lf~~A~~~~p~ILfiDEid~l~~~ 779 (1205)
..++|+|+||||||++++.++..+. +.+++.++................ ....+..+....+++|+|||++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 4699999999999999999999862 345666655444332210000000 112223344556899999999987433
Q ss_pred HHHHHHHHHHHHHHhcCC----CCCeEEeccCCcC
Q 000973 780 AHEQLRAVLLTLLEELPS----HLPILLLGSSSVP 810 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~----~~~v~vIattn~~ 810 (1205)
.. ..+..++..+.. ...+.||+++|..
T Consensus 100 ~~----~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 100 AQ----NALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HH----HHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 33 334455555432 3577888888876
No 332
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.51 E-value=6.8e-07 Score=97.37 Aligned_cols=114 Identities=21% Similarity=0.122 Sum_probs=81.5
Q ss_pred CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc------------cccccccccCCCCccc
Q 000973 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR------------VDAIDGALRRPGRFDR 545 (1205)
Q Consensus 478 p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~------------~~~ld~aL~r~gRf~~ 545 (1205)
|.||||||+|.|- -.-.+.|-..++.- -.-+||.+||+ |..|+-.|+. |. .
T Consensus 289 pGVLFIDEvHMLD-----------IEcFsFlNrAlE~d---~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD-----------IECFSFLNRALEND---MAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-L 351 (454)
T ss_pred cceEEEeeehhhh-----------hHHHHHHHHHhhhc---cCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-h
Confidence 7799999999872 22233333344321 12255556665 3346666665 55 5
Q ss_pred cccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 546 EFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 546 ~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+|...+++.++..+||++.+.......+++.++.|......-+.+..-+|+..|.+.+.++..
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~ 414 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG 414 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 677788899999999999999999999999888888777766777777888888888888764
No 333
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.2e-07 Score=105.84 Aligned_cols=97 Identities=34% Similarity=0.582 Sum_probs=73.0
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-HHHHH-HHHHHHHHHHHHh----hcCCceEEEecc
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-KWVGE-AERQLKLLFEEAQ----RNQPSIIFFDEI 486 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-~~~g~-~e~~l~~lf~~a~----~~~p~VL~IDEi 486 (1205)
..+|||.||+|+|||+||+.||+.+ .++|...+|..+.. .|+|+ .+..+..++..|. ..+..|+||||+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 3589999999999999999999998 48999999988764 67775 5666777776654 344569999999
Q ss_pred CCcccccch-hh--hHHHHHHHHHHHHHhhC
Q 000973 487 DGLAPVRSS-KQ--EQIHNSIVSTLLALMDG 514 (1205)
Q Consensus 487 d~L~~~r~~-~~--~~~~~~v~~~Ll~~ld~ 514 (1205)
|.|.....+ .. +-...-++..||.++++
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcc
Confidence 999733211 11 12245678889998886
No 334
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.49 E-value=2.4e-07 Score=115.25 Aligned_cols=133 Identities=23% Similarity=0.297 Sum_probs=86.6
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHH--HHHH--------HHHHHHhhcCCceEEE
Q 000973 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE--RQLK--------LLFEEAQRNQPSIIFF 483 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e--~~l~--------~lf~~a~~~~p~VL~I 483 (1205)
.||||.|+||||||++|++|+..+... .+|+.+.........+|... ..+. .++..+ ...||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~l 90 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYV 90 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEec
Confidence 489999999999999999999987532 24554443211222233211 0000 011111 2349999
Q ss_pred eccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----------cCCcEEEEccccccc---cccccccCCCCccccccC
Q 000973 484 DEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVD---AIDGALRRPGRFDREFNF 549 (1205)
Q Consensus 484 DEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~---~ld~aL~r~gRf~~~I~~ 549 (1205)
|||+.|- ..++..|+..|+.-. ....+.||+++|..+ .+.++|.. ||...|.+
T Consensus 91 DEi~rl~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 91 DMANLLD-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred cchhhCC-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9999883 567777888886321 113688999999865 58888888 99887766
Q ss_pred CC-CCchhhhhhhhccc
Q 000973 550 PL-PGCEARAEILDIHT 565 (1205)
Q Consensus 550 ~~-P~~eer~~Il~~~l 565 (1205)
.. |..++|.+|++..+
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 54 46677888887654
No 335
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.49 E-value=1.1e-07 Score=117.28 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=82.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhc---------ccCccccCCCccc------cCCCCCCChhhHH---HHhhc-------
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPAL------LSDPSAKTPEEAL---VHIFG------- 758 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l---------~~~~~~~l~~~~l------~~~~~~g~se~~~---~~lf~------- 758 (1205)
.++||+||||||||++|+++++.+ .+.+|+.+++... +.....|.....+ ...|.
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~ 166 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQP 166 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccc
Confidence 469999999999999999998642 1356777776431 1101111100000 00111
Q ss_pred ---cccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcC-----------------------CCCCeEEeccCCcCCc
Q 000973 759 ---EARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP-----------------------SHLPILLLGSSSVPLA 812 (1205)
Q Consensus 759 ---~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~-----------------------~~~~v~vIattn~~~~ 812 (1205)
.......++||||||+.+....+..++..|..-.-.+. +....+|++||+.+ +
T Consensus 167 ~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p-~ 245 (531)
T TIGR02902 167 KPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP-E 245 (531)
T ss_pred cCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc-c
Confidence 11123457999999999988776665554422100000 01124455555655 8
Q ss_pred cccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 813 EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 813 ~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.|++ +.+++. ..++|++++.+++..|++..+.+
T Consensus 246 ~L~p--aLrsR~-~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 246 EIPP--ALRSRC-VEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred cCCh--HHhhhh-heeeCCCCCHHHHHHHHHHHHHH
Confidence 8888 444442 45668888889999999988764
No 336
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=8.2e-08 Score=113.34 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=97.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCcc---------ccCCCCCCChhhHHH----HhhccccccCCceee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPA---------LLSDPSAKTPEEALV----HIFGEARRTTPSILY 769 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~---------l~~~~~~g~se~~~~----~lf~~A~~~~p~ILf 769 (1205)
.+|+.|.+||||..+|++|.+... .-||++++++. || +|--|....+.+ .+|+.|.. +-||
T Consensus 270 tVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF-Gye~GAFTGA~~~GK~GlfE~A~g---GTLF 345 (560)
T COG3829 270 TVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF-GYEKGAFTGASKGGKPGLFELANG---GTLF 345 (560)
T ss_pred cEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHh-CcCCccccccccCCCCcceeeccC---CeEE
Confidence 599999999999999999998763 46999999864 34 333333333333 46776654 4799
Q ss_pred eccchhhHHhHHHHHHHHHHHHHHh-----cCC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCc
Q 000973 770 IPQFNLWWENAHEQLRAVLLTLLEE-----LPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPST 835 (1205)
Q Consensus 770 iDEid~l~~~~~~~~~~~ll~lL~~-----~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~ 835 (1205)
+|||..+....+.+ |+..|++ +-+ .-+|-||||||+.+..+-. .+.|+.. .|+.|..|..
T Consensus 346 LDEIgempl~LQaK----LLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~--~G~FReDLYYRLNV~~i~iPPL 419 (560)
T COG3829 346 LDEIGEMPLPLQAK----LLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIA--EGTFREDLYYRLNVIPITIPPL 419 (560)
T ss_pred ehhhccCCHHHHHH----HHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHh--cCcchhhheeeeceeeecCCCc
Confidence 99999987766666 5555554 222 3478899999998766655 6666643 8999999999
Q ss_pred cchhhhHHHHHHHH
Q 000973 836 EDRSLFLGRLIEAA 849 (1205)
Q Consensus 836 ~eR~~i~~~~l~~~ 849 (1205)
.+|.+=+..+..-+
T Consensus 420 ReR~eDI~~L~~~F 433 (560)
T COG3829 420 RERKEDIPLLAEYF 433 (560)
T ss_pred ccCcchHHHHHHHH
Confidence 99997666665544
No 337
>PRK06620 hypothetical protein; Validated
Probab=98.48 E-value=1.1e-07 Score=103.77 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=73.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
+.++|+||||||||||++++++.. +..++. ... . ....+ ....+|+||||+.|-. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~----~~~----~------~~~~~-----~~~d~lliDdi~~~~~---~- 100 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-NAYIIK----DIF----F------NEEIL-----EKYNAFIIEDIENWQE---P- 100 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-CCEEcc----hhh----h------chhHH-----hcCCEEEEeccccchH---H-
Confidence 459999999999999999999876 322211 000 0 00111 1236899999996621 2
Q ss_pred HHHHHHHHHHhcCCCCCeEEeccCCcCCcc--ccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 784 LRAVLLTLLEELPSHLPILLLGSSSVPLAE--VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 784 ~~~~ll~lL~~~~~~~~v~vIattn~~~~~--Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.|..+++.+......+||+++..| .. | +.+.+++....++.+..|+.+++..+++.++.
T Consensus 101 ---~lf~l~N~~~e~g~~ilits~~~p-~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 101 ---ALLHIFNIINEKQKYLLLTSSDKS-RNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred ---HHHHHHHHHHhcCCEEEEEcCCCc-cccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 334444444333345666655555 33 4 45666666567999999999999988887765
No 338
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=7.7e-07 Score=102.19 Aligned_cols=137 Identities=19% Similarity=0.273 Sum_probs=90.8
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCC----------------eEEEEEe--cchhhHHH-HHHHHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ----------------KVSFYMR--KGADVLSK-WVGEAERQLKLLFE 471 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~----------------~~~~~~i--~~~~l~~~-~~g~~e~~l~~lf~ 471 (1205)
.-+..+||+||+|+||+++|.++|+.+..... .-.|+.+ ....--.+ ...-.-..++.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34557999999999999999999988743320 0011122 11000000 00012334555554
Q ss_pred HHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccc
Q 000973 472 EAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREF 547 (1205)
Q Consensus 472 ~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I 547 (1205)
.+.. +..-|++||++|.| .....+.||..|+. ...++++|.+|+.++.|.+.+++ |+ ..|
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i 167 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QRL 167 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eEe
Confidence 4432 23459999999988 35567789999995 44567777788888999999999 88 678
Q ss_pred cCCCCCchhhhhhhhc
Q 000973 548 NFPLPGCEARAEILDI 563 (1205)
Q Consensus 548 ~~~~P~~eer~~Il~~ 563 (1205)
.|+.|+.++..+.|..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 168 EFKLPPAHEALAWLLA 183 (319)
T ss_pred eCCCcCHHHHHHHHHH
Confidence 8999999888877764
No 339
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.7e-07 Score=106.79 Aligned_cols=138 Identities=20% Similarity=0.272 Sum_probs=94.4
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCC---e-----------------EEEEEecchhh----------------
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ---K-----------------VSFYMRKGADV---------------- 454 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~---~-----------------~~~~~i~~~~l---------------- 454 (1205)
+.+..+||+||+|+||+++|+++|+.+..... . -.++.+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45678999999999999999999998854321 0 01111211100
Q ss_pred --HHH----H-HHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEE
Q 000973 455 --LSK----W-VGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVL 523 (1205)
Q Consensus 455 --~~~----~-~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viV 523 (1205)
.++ . -.-.-..++.+...+. .++..|+|||++|.| .....+.||..|+ ....++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 000 0 0011234555544433 233459999999988 3556778999999 45667888
Q ss_pred EccccccccccccccCCCCccccccCCCCCchhhhhhhhcc
Q 000973 524 IGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIH 564 (1205)
Q Consensus 524 I~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~ 564 (1205)
|.+|+.++.|.+.+++ |+ ..|.|++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999 88 68999999999988888654
No 340
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.46 E-value=2.8e-07 Score=113.32 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=97.9
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe---cchhhHH
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR---KGADVLS 456 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i---~~~~l~~ 456 (1205)
.|.|++.+|..|.-.+.-- ..+..-....+....+|||+|+||||||++|+++++...+ ..|... ++..+..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg-~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r----~~~~~~~~~~~~~l~~ 278 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGG-VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR----AVYTTGKGSSAVGLTA 278 (509)
T ss_pred cccCcHHHHHHHHHHHhCC-CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc----ceEcCCCCCCcCCccc
Confidence 4789898877775543220 0011111122333458999999999999999999997642 223321 2211211
Q ss_pred HHHHH---HHHHHH-HHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----------cCCcE
Q 000973 457 KWVGE---AERQLK-LLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQV 521 (1205)
Q Consensus 457 ~~~g~---~e~~l~-~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v 521 (1205)
..+.. .+..++ ..+..| ...+|+|||++.+- ...+..|+..|+.-. ....+
T Consensus 279 ~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 279 AVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred cceEccCcceEEecCccEEec---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 10000 000000 011112 23499999999883 345566777775321 12467
Q ss_pred EEEccccccc-------------cccccccCCCCcccccc-CCCCCchhhhhhhhccc
Q 000973 522 VLIGATNRVD-------------AIDGALRRPGRFDREFN-FPLPGCEARAEILDIHT 565 (1205)
Q Consensus 522 iVI~atn~~~-------------~ld~aL~r~gRf~~~I~-~~~P~~eer~~Il~~~l 565 (1205)
.||+|+|+.+ .|++++++ ||+..+. ++.|+.+...+|++..+
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 8999999853 48899999 9987644 47788888888887654
No 341
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.46 E-value=4.1e-07 Score=100.23 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=75.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc-----CccccCCCccccCCCCCCChhhHHHHhhcccc--c---c-CCceeeecc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK-----FPVHSLGLPALLSDPSAKTPEEALVHIFGEAR--R---T-TPSILYIPQ 772 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~-----~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~--~---~-~p~ILfiDE 772 (1205)
|++|||||||||||.+|.|+|.++.+ ..+..++.+...+.-.+++.-++..++...-. . . .+-|++|||
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEec
Confidence 57999999999999999999998744 22333444433332222332333334333221 1 1 226999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 773 id~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
+|.+....+. +|...|+.... .-+|+ ..||.. +.|+.-+.++- -.|.|..-..+.-...++.+..
T Consensus 138 cdsmtsdaq~----aLrr~mE~~s~-~trFi-LIcnyl-srii~pi~SRC---~KfrFk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 138 CDSMTSDAQA----ALRRTMEDFSR-TTRFI-LICNYL-SRIIRPLVSRC---QKFRFKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred hhhhhHHHHH----HHHHHHhcccc-ceEEE-EEcCCh-hhCChHHHhhH---HHhcCCCcchHHHHHHHHHHHH
Confidence 9998765554 45556666333 33343 445555 45554222222 2344655555555555655554
No 342
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.8e-07 Score=114.17 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=80.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc-----------------------cccCCCccccCCCCCCChhhHHHHhhcccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~-----------------------~~~l~~~~l~~~~~~g~se~~~~~lf~~A~ 761 (1205)
.+||+||+|||||++|+++|+.+.... ++.++.+. ...-..++.+...+.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-------~~~VddIReli~~~~ 111 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-------RTKVEDTRELLDNVP 111 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-------cCCHHHHHHHHHHHh
Confidence 589999999999999999999873211 11111110 112334666665443
Q ss_pred c----cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccc
Q 000973 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (1205)
Q Consensus 762 ~----~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~e 837 (1205)
. ....|+||||+|.+... ..+.|+..|.+.+. ..+||++| +.+ ..++..+.++. .+|.|..++.++
T Consensus 112 y~P~~gk~KV~IIDEVh~LS~~----A~NALLKtLEEPP~-~v~FILaT-td~-~kIp~TIlSRC---q~feFkpLs~eE 181 (702)
T PRK14960 112 YAPTQGRFKVYLIDEVHMLSTH----SFNALLKTLEEPPE-HVKFLFAT-TDP-QKLPITVISRC---LQFTLRPLAVDE 181 (702)
T ss_pred hhhhcCCcEEEEEechHhcCHH----HHHHHHHHHhcCCC-CcEEEEEE-CCh-HhhhHHHHHhh---heeeccCCCHHH
Confidence 2 23469999999988653 45567777777654 23444444 444 34544122222 578899999999
Q ss_pred hhhhHHHHHHH
Q 000973 838 RSLFLGRLIEA 848 (1205)
Q Consensus 838 R~~i~~~~l~~ 848 (1205)
...+++.++.+
T Consensus 182 I~k~L~~Il~k 192 (702)
T PRK14960 182 ITKHLGAILEK 192 (702)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 343
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.45 E-value=1.1e-07 Score=112.58 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=93.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccc---------cCCCCCCChhhHHHH---hhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPAL---------LSDPSAKTPEEALVH---IFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l---------~~~~~~g~se~~~~~---lf~~A~~~~p~ILfi 770 (1205)
.+||.|++||||..+|++|..... +-||+.|+++.+ |+ +--|....+... .|+.| ..+.|||
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG-hekGAFTGA~~~r~G~fE~A---~GGTLfL 241 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG-HEKGAFTGAITRRIGRFEQA---NGGTLFL 241 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc-ccccCcCCcccccCcceeEc---CCceEEe
Confidence 499999999999999999998753 359999998653 32 112222222222 44444 4568999
Q ss_pred ccchhhHHhHHHHHHHHHHH-HHHhcCC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCccchhh
Q 000973 771 PQFNLWWENAHEQLRAVLLT-LLEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~-lL~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~eR~~ 840 (1205)
|||..+.-..+.+++.+|.+ .+..+-+ .-+|-||+|||.....+-. .+.|+.. +|+.+..|...+|.+
T Consensus 242 DEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~--~G~FReDLyyRLnV~~i~iPpLRER~E 319 (464)
T COG2204 242 DEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA--AGRFREDLYYRLNVVPLRLPPLRERKE 319 (464)
T ss_pred eccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH--cCCcHHHHHhhhccceecCCcccccch
Confidence 99999887777775554421 1112222 3478899999987555544 6677653 899999999999997
Q ss_pred hHHHHHHH
Q 000973 841 FLGRLIEA 848 (1205)
Q Consensus 841 i~~~~l~~ 848 (1205)
=+-.++..
T Consensus 320 DIp~L~~h 327 (464)
T COG2204 320 DIPLLAEH 327 (464)
T ss_pred hHHHHHHH
Confidence 55554443
No 344
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2.2e-07 Score=118.67 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=77.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcccC------cccc------CC-----Cccc--cCCCCCCChhhHHHHhhccc----c
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKF------PVHS------LG-----LPAL--LSDPSAKTPEEALVHIFGEA----R 761 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~------~~~~------l~-----~~~l--~~~~~~g~se~~~~~lf~~A----~ 761 (1205)
.+||+||+|||||++|++||+.|... ++-. +. ..++ +..... ..-..++.+...+ .
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~-~~Vd~iR~l~~~~~~~p~ 117 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH-GGVDDARELRERAFFAPA 117 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc-CCHHHHHHHHHHHHhchh
Confidence 38999999999999999999987310 0000 00 0001 000000 0122344433222 2
Q ss_pred ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhh
Q 000973 762 RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (1205)
Q Consensus 762 ~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i 841 (1205)
.....|+||||+|.+.. ...+.|+.+|.+... .++||.+|+.+ +.|.+ .++..-.+|.|..++.++...+
T Consensus 118 ~~~~KV~IIDEad~lt~----~a~NaLLK~LEEpP~--~~~fIl~tt~~-~kLl~---TIrSRc~~v~F~~l~~~~l~~~ 187 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP----QGFNALLKIVEEPPE--HLKFIFATTEP-DKVIG---TIRSRTHHYPFRLVPPEVMRGY 187 (824)
T ss_pred cCCceEEEEechhhcCH----HHHHHHHHHHhCCCC--CeEEEEEeCCh-hhhhH---HHHhheeEEEeeCCCHHHHHHH
Confidence 34457999999999865 445668888888765 34444444444 34433 2333126788999988888888
Q ss_pred HHHHHHH
Q 000973 842 LGRLIEA 848 (1205)
Q Consensus 842 ~~~~l~~ 848 (1205)
++.++.+
T Consensus 188 L~~il~~ 194 (824)
T PRK07764 188 LERICAQ 194 (824)
T ss_pred HHHHHHH
Confidence 8777653
No 345
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3e-07 Score=108.49 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=80.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC---------------CccccC-CCCCCChhhHHHHhhcccccc----C
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG---------------LPALLS-DPSAKTPEEALVHIFGEARRT----T 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~---------------~~~l~~-~~~~g~se~~~~~lf~~A~~~----~ 764 (1205)
.+||+||+|||||++|+++|+.+....-.... .++++. +......-..++++...+... .
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~ 119 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSR 119 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCC
Confidence 47999999999999999999987311100000 011110 000012234466666554322 2
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..|+||||+|.+... ..+.|+..|...+. .+.+|.+|+.+ ..|.+.+.+++ .+++|.+|+.++...+++.
T Consensus 120 ~kviIIDEa~~l~~~----a~naLLk~lEe~~~--~~~fIl~t~~~-~~l~~tI~SRc---~~~~~~~l~~~el~~~L~~ 189 (363)
T PRK14961 120 FKVYLIDEVHMLSRH----SFNALLKTLEEPPQ--HIKFILATTDV-EKIPKTILSRC---LQFKLKIISEEKIFNFLKY 189 (363)
T ss_pred ceEEEEEChhhcCHH----HHHHHHHHHhcCCC--CeEEEEEcCCh-HhhhHHHHhhc---eEEeCCCCCHHHHHHHHHH
Confidence 359999999987543 33456666666544 33333344444 45554333333 5788999999999999888
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
.+.+
T Consensus 190 ~~~~ 193 (363)
T PRK14961 190 ILIK 193 (363)
T ss_pred HHHH
Confidence 8764
No 346
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.42 E-value=1.2e-07 Score=108.08 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=84.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCC-CCCChhhH----------HHHhhccccccCCceeeecc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDP-SAKTPEEA----------LVHIFGEARRTTPSILYIPQ 772 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~-~~g~se~~----------~~~lf~~A~~~~p~ILfiDE 772 (1205)
.++||.|+||||||++|+.||+.+ +.+++++++...+... .+|...-. ....+..|.. .+++||+||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l-~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARL-NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHH-CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 469999999999999999999999 8999988765544321 13331110 1112333333 468899999
Q ss_pred chhhHHhHHHHHHHHHHHHHHh-----c-------CCCCCeEEeccCCcCCccccC---------CC-ccccCCCceeee
Q 000973 773 FNLWWENAHEQLRAVLLTLLEE-----L-------PSHLPILLLGSSSVPLAEVEG---------DP-STVFPLRSVYQV 830 (1205)
Q Consensus 773 id~l~~~~~~~~~~~ll~lL~~-----~-------~~~~~v~vIattn~~~~~Ld~---------~~-~~~f~~r~ii~~ 830 (1205)
|+..-+. +...|+.+|+. + ....++.||||.|.. ..-+. .. +.+=++..++.+
T Consensus 143 in~a~p~----~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~-g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~ 217 (327)
T TIGR01650 143 YDAGRPD----VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI-GLGDTTGLYHGTQQINQAQMDRWSIVTTL 217 (327)
T ss_pred hhccCHH----HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC-CcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence 9987554 44556666652 1 123468899999964 32221 01 111111135579
Q ss_pred cCCCccchhhhHHH
Q 000973 831 EKPSTEDRSLFLGR 844 (1205)
Q Consensus 831 ~~P~~~eR~~i~~~ 844 (1205)
..|+.++-.+|+..
T Consensus 218 ~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 218 NYLEHDNEAAIVLA 231 (327)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999988888864
No 347
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.5e-07 Score=109.45 Aligned_cols=130 Identities=22% Similarity=0.203 Sum_probs=79.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCc--------------cccCCCccc--cCCCCCCChhhHHHHhhcccccc----
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFP--------------VHSLGLPAL--LSDPSAKTPEEALVHIFGEARRT---- 763 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~--------------~~~l~~~~l--~~~~~~g~se~~~~~lf~~A~~~---- 763 (1205)
..+||+||+|+|||++|.++|..+..-. +..-.-+++ +......-.-..+++++..+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~ 116 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTG 116 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccC
Confidence 4699999999999999999998752110 000011111 10000011123477777766542
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...|+||||+|.+.... .+.|+..|++.+. ..+|||+|++ + ..|.+.+.++. .++.|++|+.++...++.
T Consensus 117 ~~kViiIDead~m~~~a----anaLLk~LEep~~-~~~fIL~a~~-~-~~llpTIrSRc---~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 117 RWRIVVIEDADRLTERA----ANALLKAVEEPPP-RTVWLLCAPS-P-EDVLPTIRSRC---RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred CcEEEEEechhhcCHHH----HHHHHHHhhcCCC-CCeEEEEECC-h-HHChHHHHhhC---eEEECCCCCHHHHHHHHH
Confidence 34699999999986543 3567777766543 4666666666 4 56666333333 477899999888666554
No 348
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.8e-07 Score=101.55 Aligned_cols=90 Identities=21% Similarity=0.350 Sum_probs=70.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHH-HHhhcccc----ccCCceeeeccchhhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEAL-VHIFGEAR----RTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~-~~lf~~A~----~~~p~ILfiDEid~l~~ 778 (1205)
..+||.||+|||||+||+.+|+.+ ..||..-+...|.---|+|+--+++ -++++.|. ++.-+||||||||++..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 469999999999999999999999 8999998888887544478766664 34555442 34568999999999983
Q ss_pred h----------HHHHHHHHHHHHHHh
Q 000973 779 N----------AHEQLRAVLLTLLEE 794 (1205)
Q Consensus 779 ~----------~~~~~~~~ll~lL~~ 794 (1205)
. .++-+..+|+.++.+
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcC
Confidence 3 346677788888886
No 349
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.42 E-value=1.6e-07 Score=109.36 Aligned_cols=130 Identities=19% Similarity=0.166 Sum_probs=79.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-CCCCCChhhHH----HHhhccccc--cCC--ceeeeccch
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTPEEAL----VHIFGEARR--TTP--SILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~-~~~~g~se~~~----~~lf~~A~~--~~p--~ILfiDEid 774 (1205)
.++||.|+||||||++|+.+|..+ +.+|+++.+...+. .-..|...-.. ...|..... ... +|||+|||.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l-~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARAL-GLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHh-CCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 469999999999999999999999 78888887643221 11123222111 111111111 011 499999998
Q ss_pred hhHHhHHHHHHHHHHHHHHhc----------CCCCCeEEeccCCcC----CccccCCCccccCCCceeeecCCCccchhh
Q 000973 775 LWWENAHEQLRAVLLTLLEEL----------PSHLPILLLGSSSVP----LAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~----------~~~~~v~vIattn~~----~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
... ..+.++|+..|++. .-..+++||+|+|.. -..|++ +.+.++...+.++.|..++-..
T Consensus 123 ra~----p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~e--A~ldRf~~~~~v~yp~~~~e~~ 196 (329)
T COG0714 123 RAP----PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPE--ALLDRFLLRIYVDYPDSEEEER 196 (329)
T ss_pred cCC----HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCH--HHHhhEEEEEecCCCCchHHHH
Confidence 855 46667788888872 223688999999921 134555 3333322566788885444333
No 350
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=3.4e-07 Score=106.89 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=79.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc----CccccCCCccccCCC--C----------CCC-------hhhHHHHhhccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDP--S----------AKT-------PEEALVHIFGEA 760 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~----~~~~~l~~~~l~~~~--~----------~g~-------se~~~~~lf~~A 760 (1205)
+++||+||||||||++|+++++++.+ .+++.++...+.... . .+. ....++++...+
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 46999999999999999999998632 234555554432110 0 000 012233332222
Q ss_pred cc-----cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCc
Q 000973 761 RR-----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST 835 (1205)
Q Consensus 761 ~~-----~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~ 835 (1205)
.. ..+.||+|||++.+.... .+.|..+|+..... ..+|+++++ + ..+.+.+..+. .++.|.+|+.
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~~~~----~~~L~~~le~~~~~-~~~Il~~~~-~-~~~~~~L~sr~---~~v~~~~~~~ 186 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALREDA----QQALRRIMEQYSRT-CRFIIATRQ-P-SKLIPPIRSRC---LPLFFRAPTD 186 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCCHHH----HHHHHHHHHhccCC-CeEEEEeCC-h-hhCchhhcCCc---eEEEecCCCH
Confidence 22 234699999999886433 34466667665543 344444444 4 23333222222 5778999999
Q ss_pred cchhhhHHHHHHH
Q 000973 836 EDRSLFLGRLIEA 848 (1205)
Q Consensus 836 ~eR~~i~~~~l~~ 848 (1205)
++...+++.++.+
T Consensus 187 ~~~~~~l~~~~~~ 199 (337)
T PRK12402 187 DELVDVLESIAEA 199 (337)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888887754
No 351
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.40 E-value=8.8e-07 Score=102.24 Aligned_cols=164 Identities=27% Similarity=0.330 Sum_probs=104.5
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC--CeEEEE--Ee-
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG--QKVSFY--MR- 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--~~~~~~--~i- 449 (1205)
...|.-++|++..+..|.-.... +.-.|+||-|+.|||||+++|+||..|...- ..+.|. -.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 56788899999998877443222 2234899999999999999999998874210 000000 00
Q ss_pred ---cchhhHHH-------------------HHHHHHHHH----------H--------HHHHHHhhcCCceEEEeccCCc
Q 000973 450 ---KGADVLSK-------------------WVGEAERQL----------K--------LLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 450 ---~~~~l~~~-------------------~~g~~e~~l----------~--------~lf~~a~~~~p~VL~IDEid~L 489 (1205)
.|..+..+ -.|.++.++ + .++..| + ..||+|||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A--n-RGIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA--N-RGILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc--c-CCEEEEeccccc
Confidence 00001111 112222211 1 111222 2 239999999877
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhCc-----------ccCCcEEEEccccccc-cccccccCCCCccccccCCCC-Cchh
Q 000973 490 APVRSSKQEQIHNSIVSTLLALMDGL-----------DSRGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLP-GCEA 556 (1205)
Q Consensus 490 ~~~r~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~viVI~atn~~~-~ld~aL~r~gRf~~~I~~~~P-~~ee 556 (1205)
...++..||..+..- ....++++|||+|+.+ .|-+.|+. ||...|.+..| +.++
T Consensus 157 -----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 -----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 466888888887642 1224789999999854 47888888 99999998877 6688
Q ss_pred hhhhhhccccc
Q 000973 557 RAEILDIHTRK 567 (1205)
Q Consensus 557 r~~Il~~~l~~ 567 (1205)
+.+|+...+.-
T Consensus 224 rv~Ii~r~~~f 234 (423)
T COG1239 224 RVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999876654
No 352
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.39 E-value=3.3e-07 Score=110.38 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=87.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccc--c--ccCCceeeeccchhhHHhH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEA--R--RTTPSILYIPQFNLWWENA 780 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A--~--~~~p~ILfiDEid~l~~~~ 780 (1205)
-+|||||||.|||+||+.||+.. |+.++.++.++--+.. ...+.+..+...- - ...|.+|+|||||-..
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDeRt~~---~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--- 400 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDERTAP---MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--- 400 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc-CceEEEecccccccHH---HHHHHHHHHHhhccccccCCCcceEEEecccCCc---
Confidence 48999999999999999999998 9999999987765421 2222333322211 1 2568899999999755
Q ss_pred HHHHHHHHHHHHHhc-------CC--------------CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000973 781 HEQLRAVLLTLLEEL-------PS--------------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 781 ~~~~~~~ll~lL~~~-------~~--------------~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
..++.+|+.++..- .. ..+ |||.+|.. .-|.+..+++...|+.|.+|...-..
T Consensus 401 -~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP--IICICNdL---YaPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 401 -RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP--IICICNDL---YAPALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred -HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC--EEEEecCc---cchhhhhcccceEEEEecCCChhHHH
Confidence 34556666666521 00 123 55666754 23355556666689999999888777
Q ss_pred hhHHHHHHH
Q 000973 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
+=|+.+..+
T Consensus 475 ~RL~~IC~r 483 (877)
T KOG1969|consen 475 ERLNEICHR 483 (877)
T ss_pred HHHHHHHhh
Confidence 666666543
No 353
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.39 E-value=9.5e-07 Score=101.77 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=43.9
Q ss_pred cccc-ccCChhHHHHHhhhhhccccccccccccccc-CCCcceeeecCCCChhHHHHHHHHhhhhh
Q 000973 376 VSFD-DIGGLSEYIDALKEMVFFPLLYPDFFASYHI-TPPRGVLLCGPPGTGKTLIARALACAASK 439 (1205)
Q Consensus 376 ~~~~-~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~-~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (1205)
.-|+ ++.|+++++.+|.+.+.... .|+ ...+.++|+||||||||+||++||+.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3466 79999999999988765421 122 23467899999999999999999999865
No 354
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.4e-07 Score=109.83 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=77.9
Q ss_pred eeeecCCCCCCCccchhhhhhcccC-c---------------------cccCCCccccCCCCCCChhhHHHHhhccccc-
Q 000973 706 LLLCGSEGTGVDHLGPAILHELEKF-P---------------------VHSLGLPALLSDPSAKTPEEALVHIFGEARR- 762 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~~-~---------------------~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~- 762 (1205)
+||+||||||||++|+++|+.+... + ++.++.. ....-..++++...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~-------~~~~vd~iR~l~~~~~~~ 111 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA-------SNNSVEDVRDLREKVLLA 111 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc-------ccCCHHHHHHHHHHHhhc
Confidence 6999999999999999999987311 0 1112111 01112345555443332
Q ss_pred ---cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000973 763 ---TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 763 ---~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
..+.||+|||+|.+.. ...+.|+..|..... .+++|.+|+.+ ..|.+.+.++. .++.|..|+.++..
T Consensus 112 p~~~~~kVVIIDEad~ls~----~a~naLLk~LEep~~--~t~~Il~t~~~-~kl~~~I~SRc---~~~~f~~ls~~el~ 181 (504)
T PRK14963 112 PLRGGRKVYILDEAHMMSK----SAFNALLKTLEEPPE--HVIFILATTEP-EKMPPTILSRT---QHFRFRRLTEEEIA 181 (504)
T ss_pred cccCCCeEEEEECccccCH----HHHHHHHHHHHhCCC--CEEEEEEcCCh-hhCChHHhcce---EEEEecCCCHHHHH
Confidence 3456999999997643 334455555555433 44444455655 55555333332 47889999999999
Q ss_pred hhHHHHHHH
Q 000973 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
.+++.++.+
T Consensus 182 ~~L~~i~~~ 190 (504)
T PRK14963 182 GKLRRLLEA 190 (504)
T ss_pred HHHHHHHHH
Confidence 999888864
No 355
>PRK06526 transposase; Provisional
Probab=98.39 E-value=8.5e-07 Score=99.07 Aligned_cols=75 Identities=27% Similarity=0.449 Sum_probs=49.2
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH-HHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~-e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
...+++|+||||||||+||.+|+.++...+..+.| +...+++....... ...+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f--~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF--ATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh--hhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 35689999999999999999999998877766544 34445544332111 11122222222 345799999998764
No 356
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.37 E-value=1.3e-07 Score=115.42 Aligned_cols=80 Identities=33% Similarity=0.539 Sum_probs=69.3
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhh
Q 000973 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRD 992 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~ 992 (1205)
...+++|..+|+...+|+||.||+.||||+|+.+|+..+.|.+.++|..|+.+||.||.+||.+.. +.+..-|..+.+
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~--~~~~~~~vv~~~ 378 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES--HGLIEFAVIMNS 378 (720)
T ss_pred cccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc--hhhhhhhhhhcc
Confidence 788999999999999999999999999999999999999999999999999999999999999853 334444444433
Q ss_pred hH
Q 000973 993 AV 994 (1205)
Q Consensus 993 ~~ 994 (1205)
.-
T Consensus 379 ~s 380 (720)
T KOG1472|consen 379 KS 380 (720)
T ss_pred Cc
Confidence 33
No 357
>PRK08181 transposase; Validated
Probab=98.37 E-value=1.3e-06 Score=98.13 Aligned_cols=103 Identities=24% Similarity=0.371 Sum_probs=63.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHH-HHHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~-~e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
...+++|+||||||||+||.++|+++...++.+.|+ +..+++..+... .......++... ..+.+|+|||++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~--~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT--RTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee--eHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 346899999999999999999999987777666554 456666544221 111223333333 345699999998764
Q ss_pred cccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 491 ~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.. ......|+.+++...... -+|.|||.
T Consensus 181 ~~---------~~~~~~Lf~lin~R~~~~--s~IiTSN~ 208 (269)
T PRK08181 181 KD---------QAETSVLFELISARYERR--SILITANQ 208 (269)
T ss_pred CC---------HHHHHHHHHHHHHHHhCC--CEEEEcCC
Confidence 32 122334555555433332 34556665
No 358
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.2e-07 Score=114.15 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=77.4
Q ss_pred eeeecCCCCCCCccchhhhhhcccCcc------ccCC---------CccccCCCCCC---ChhhHHHHhhccccc----c
Q 000973 706 LLLCGSEGTGVDHLGPAILHELEKFPV------HSLG---------LPALLSDPSAK---TPEEALVHIFGEARR----T 763 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~~~~------~~l~---------~~~l~~~~~~g---~se~~~~~lf~~A~~----~ 763 (1205)
+||+||+|||||++|+++|+.+..... .... ...++ . +-+ ..-..++++...+.. .
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi-E-idAas~~kVDdIReLie~v~~~P~~g 118 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI-E-VDAASRTKVDDTRELLDNVQYRPSRG 118 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE-E-eccccccCHHHHHHHHHHHHhhhhcC
Confidence 699999999999999999998732111 1000 00010 0 011 112345665554432 2
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...|+||||+|.+.. ...+.|+..|.+.+. ..+||++||+ + ..|.+ ..+.+ ..+|.|..++.++...+++
T Consensus 119 k~KViIIDEAh~LT~----eAqNALLKtLEEPP~-~vrFILaTTe-~-~kLl~--TIlSR-Cq~f~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 119 RFKVYLIDEVHMLSR----SSFNALLKTLEEPPE-HVKFLLATTD-P-QKLPV--TVLSR-CLQFNLKSLTQDEIGTQLN 188 (944)
T ss_pred CcEEEEEechHhcCH----HHHHHHHHHHhccCC-CeEEEEECCC-c-hhchH--HHHHh-heEEeCCCCCHHHHHHHHH
Confidence 346999999999854 344556666666544 2334455555 4 34444 22222 2678899999999888888
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
.++..
T Consensus 189 ~il~~ 193 (944)
T PRK14949 189 HILTQ 193 (944)
T ss_pred HHHHH
Confidence 87753
No 359
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.5e-07 Score=111.77 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=78.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc-----------------------cccCCCccccCCCCCCChhhHHHHhhcccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----------------------VHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~-----------------------~~~l~~~~l~~~~~~g~se~~~~~lf~~A~ 761 (1205)
.+||+||+|||||++|+++|+.+.... ++.++.+ ....-..++++...+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa-------s~~~v~~iR~l~~~~~ 112 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA-------SRTKVEDTRELLDNIP 112 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc-------ccCCHHHHHHHHHHHh
Confidence 479999999999999999999873211 1222211 1122334666655433
Q ss_pred c----cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccc
Q 000973 762 R----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (1205)
Q Consensus 762 ~----~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~e 837 (1205)
- ....|+||||+|.+... ..+.|+..|.+.+.. .+||++||+ + ..+.+.+.++. .+++|..++.++
T Consensus 113 ~~p~~~~~kV~iIDE~~~ls~~----a~naLLk~LEepp~~-~~fIlattd-~-~kl~~tI~SRc---~~~~f~~l~~~~ 182 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVHMLSGH----SFNALLKTLEEPPSH-VKFILATTD-H-HKLPVTVLSRC---LQFHLAQLPPLQ 182 (509)
T ss_pred hccccCCcEEEEEEChHhcCHH----HHHHHHHHHhccCCC-eEEEEEECC-h-HhchHHHHHHh---hhhhcCCCCHHH
Confidence 2 23469999999998653 345677777776543 445555544 4 45554222222 467788888888
Q ss_pred hhhhHHHHHHH
Q 000973 838 RSLFLGRLIEA 848 (1205)
Q Consensus 838 R~~i~~~~l~~ 848 (1205)
....++.++..
T Consensus 183 i~~~l~~il~~ 193 (509)
T PRK14958 183 IAAHCQHLLKE 193 (509)
T ss_pred HHHHHHHHHHH
Confidence 77777777754
No 360
>PRK12377 putative replication protein; Provisional
Probab=98.36 E-value=1.6e-06 Score=96.19 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=61.7
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHH--HHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e--~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
..+++|+||||||||+||.+||+.+...+..+.|+ +..+++........ .....++... ....||+||||....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i--~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV--TVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE--EHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 35899999999999999999999998777666444 44566554322111 0112233333 345699999997553
Q ss_pred cccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 491 ~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.. ......|+.+++.-... ..-+|.|||.
T Consensus 177 ~s---------~~~~~~l~~ii~~R~~~-~~ptiitSNl 205 (248)
T PRK12377 177 ET---------KNEQVVLNQIIDRRTAS-MRSVGMLTNL 205 (248)
T ss_pred CC---------HHHHHHHHHHHHHHHhc-CCCEEEEcCC
Confidence 21 11234455566543332 2334556775
No 361
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.36 E-value=5e-08 Score=98.83 Aligned_cols=99 Identities=24% Similarity=0.237 Sum_probs=59.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCcc------ccCCCCC--CChhhHHHHhhccccccCCceeeeccchhh
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPA------LLSDPSA--KTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~------l~~~~~~--g~se~~~~~lf~~A~~~~p~ILfiDEid~l 776 (1205)
+|||+||||||||++|+.+|+.+ +.+++.+.+.. |+..|.. +..+- ....+..|.. .++|||||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~-~~~~l~~a~~-~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPSNGQFEF-KDGPLVRAMR-KGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET-TTTTCE-EE-CCCTTHH-EEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeeccccccc-cccccccccc-ceeEEEECCcccC
Confidence 38999999999999999999998 77776665443 2222211 11110 0011111111 4789999999985
Q ss_pred HHhHHHHHHHHHHHHHHhc----CC-------CC------CeEEeccCCcC
Q 000973 777 WENAHEQLRAVLLTLLEEL----PS-------HL------PILLLGSSSVP 810 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~----~~-------~~------~v~vIattn~~ 810 (1205)
. ..+...|+.+|+.- .. .. ++.||||+|..
T Consensus 78 ~----~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 78 P----PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp -----HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred C----HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 4 56666677777752 10 11 37888888866
No 362
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=6.4e-07 Score=108.81 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=82.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCcccc----------------CC---CccccC-CCCCCChhhHHHHhhcccccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS----------------LG---LPALLS-DPSAKTPEEALVHIFGEARRT 763 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~----------------l~---~~~l~~-~~~~g~se~~~~~lf~~A~~~ 763 (1205)
..+||+||+|||||++|+++|+.+....... +. -++++- +-........++.++..+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~ 123 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK 123 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc
Confidence 4699999999999999999999873211000 00 001100 000112335577777666533
Q ss_pred ----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000973 764 ----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 764 ----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
...|++|||+|.+.. ...+.|+..|.+.+. ..+||++| +.+ ..+++.+.++. .+++|..++.++..
T Consensus 124 P~~~~~KVvIIDEa~~Ls~----~a~naLLk~LEepp~-~~vfI~aT-te~-~kI~~tI~SRc---~~~ef~~ls~~el~ 193 (507)
T PRK06645 124 PLQGKHKIFIIDEVHMLSK----GAFNALLKTLEEPPP-HIIFIFAT-TEV-QKIPATIISRC---QRYDLRRLSFEEIF 193 (507)
T ss_pred cccCCcEEEEEEChhhcCH----HHHHHHHHHHhhcCC-CEEEEEEe-CCh-HHhhHHHHhcc---eEEEccCCCHHHHH
Confidence 245999999998864 334456666665443 33444454 444 45655222222 57889999999999
Q ss_pred hhHHHHHHH
Q 000973 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
.+++.++.+
T Consensus 194 ~~L~~i~~~ 202 (507)
T PRK06645 194 KLLEYITKQ 202 (507)
T ss_pred HHHHHHHHH
Confidence 999988864
No 363
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.35 E-value=2.5e-06 Score=115.02 Aligned_cols=208 Identities=23% Similarity=0.326 Sum_probs=117.9
Q ss_pred ccCccccchhHHHhccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCccee
Q 000973 338 SGWGHQGDTLAALTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVL 417 (1205)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vL 417 (1205)
..|..+.+.++.+...|.... ...+...+++++|++..+++|..++.. +....+-|.
T Consensus 155 ~~~~~E~~~i~~Iv~~v~~~l------------~~~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvg 211 (1153)
T PLN03210 155 QNWPNEAKMIEEIANDVLGKL------------NLTPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVG 211 (1153)
T ss_pred CCCCCHHHHHHHHHHHHHHhh------------ccccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEE
Confidence 346777777888877776532 222455688899999999999887754 123456788
Q ss_pred eecCCCChhHHHHHHHHhhhhhcCCeEEEEEe---cch-hhHH--------HHHHHHHHHHH-------------HHHHH
Q 000973 418 LCGPPGTGKTLIARALACAASKAGQKVSFYMR---KGA-DVLS--------KWVGEAERQLK-------------LLFEE 472 (1205)
Q Consensus 418 L~GppGtGKT~laralA~~l~~~~~~~~~~~i---~~~-~l~~--------~~~g~~e~~l~-------------~lf~~ 472 (1205)
|+|++|+||||||+++++.+........|+.. ... .... ....-....+. ..+..
T Consensus 212 I~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~ 291 (1153)
T PLN03210 212 IWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEE 291 (1153)
T ss_pred EEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHH
Confidence 99999999999999999887654322222210 000 0000 00000000111 11222
Q ss_pred HhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCC
Q 000973 473 AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (1205)
Q Consensus 473 a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P 552 (1205)
....++.+|+||+++.. .++..|....+.+ ..+..||| ||.....+ +...++.++.++.|
T Consensus 292 ~L~~krvLLVLDdv~~~-------------~~l~~L~~~~~~~-~~GsrIIi-TTrd~~vl-----~~~~~~~~~~v~~l 351 (1153)
T PLN03210 292 RLKHRKVLIFIDDLDDQ-------------DVLDALAGQTQWF-GSGSRIIV-ITKDKHFL-----RAHGIDHIYEVCLP 351 (1153)
T ss_pred HHhCCeEEEEEeCCCCH-------------HHHHHHHhhCccC-CCCcEEEE-EeCcHHHH-----HhcCCCeEEEecCC
Confidence 23355679999998632 2333343333322 23334444 55432222 21235577899999
Q ss_pred CchhhhhhhhccccccCCCCc--hhHHHHHhhhhhccc
Q 000973 553 GCEARAEILDIHTRKWKQPPS--RELKSELAASCVGYC 588 (1205)
Q Consensus 553 ~~eer~~Il~~~l~~~~~~~~--~~~l~~LA~~t~G~s 588 (1205)
+.++..++|..++.+...... .++...++..+.|+-
T Consensus 352 ~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 352 SNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 999999999887755432221 123345666666653
No 364
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.5e-06 Score=99.68 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=91.5
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCC------------------eEEEEEecchhhHHHHHHHHHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ------------------KVSFYMRKGADVLSKWVGEAERQLKLLFEE 472 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~------------------~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~ 472 (1205)
+.+..+||+||.|+||+++|+++|+.+..... .-.|+.+.... .++.+ .-..++.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44568999999999999999999988743211 11122222110 00001 12233444333
Q ss_pred H----hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCcccccc
Q 000973 473 A----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFN 548 (1205)
Q Consensus 473 a----~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~ 548 (1205)
+ ..++.-|++||++|.| .....+.||..|+. ...++++|..|+.++.|-|.+++ |+ ..+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeEe
Confidence 3 2333469999999988 35567789999994 45678888888889999999999 88 5789
Q ss_pred CCCCCchhhhhhhhc
Q 000973 549 FPLPGCEARAEILDI 563 (1205)
Q Consensus 549 ~~~P~~eer~~Il~~ 563 (1205)
|+.|+.++..+.|..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999888887754
No 365
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=6.5e-07 Score=110.95 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=79.4
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC---------------Ccccc--CCCCCCChhhHHHHhhccccc----c
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG---------------LPALL--SDPSAKTPEEALVHIFGEARR----T 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~---------------~~~l~--~~~~~g~se~~~~~lf~~A~~----~ 763 (1205)
.+||+||+|||||++|+++|+.+.....+... -++++ ..- ....-..++++...+.. .
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaa-s~~~VddiR~li~~~~~~p~~g 118 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAA-SRTKVEDTRELLDNVQYAPARG 118 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccc-ccCCHHHHHHHHHHHHhhhhcC
Confidence 37999999999999999999987321110000 00111 000 00122346666555432 2
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...|+||||+|.+.. ...+.|+..|.+-+. ..+||++||+ + ..|.+.+.++. .+|.|..++.++-..+++
T Consensus 119 ~~KV~IIDEah~Ls~----~a~NALLKtLEEPp~-~v~FIL~Tt~-~-~kLl~TI~SRC---~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 119 RFKVYLIDEVHMLSR----HSFNALLKTLEEPPE-HVKFLLATTD-P-QKLPVTILSRC---LQFHLKALDVEQIRQQLE 188 (647)
T ss_pred CCEEEEEechHhCCH----HHHHHHHHHHHcCCC-CeEEEEecCC-c-cccchHHHhhh---eEeeCCCCCHHHHHHHHH
Confidence 346999999999765 345567777766544 2345555554 5 45554233322 577889999988888888
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
.++..
T Consensus 189 ~il~~ 193 (647)
T PRK07994 189 HILQA 193 (647)
T ss_pred HHHHH
Confidence 77753
No 366
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.33 E-value=1.9e-07 Score=109.01 Aligned_cols=134 Identities=23% Similarity=0.246 Sum_probs=89.9
Q ss_pred eeeecCCCCCCCccchhhhhhccc----CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh--
Q 000973 706 LLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-- 779 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~----~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-- 779 (1205)
++|+|++|+|||||++|++++... ..++.+....++..+ +-..-..-..-|..-. .-.+|+||+|+.+...
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~ 192 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER 192 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh
Confidence 899999999999999999998522 123333322222111 0000000112233333 3469999999998754
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc---CCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE---GDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld---~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.+..++.+|+.+.+.-. -||.|+.++|..|. +.+.++|.+..++.+.+|+.+.|..|++....
T Consensus 193 ~qeefFh~FN~l~~~~k-----qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 193 TQEEFFHTFNALLENGK-----QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHHHHhcCC-----EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 46777777777764433 46667888877766 37888888889999999999999999998554
No 367
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.8e-07 Score=102.48 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=71.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhH-HHHhhcccc----ccCCceeeeccchhhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEA-LVHIFGEAR----RTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~-~~~lf~~A~----~~~p~ILfiDEid~l~~ 778 (1205)
..+||.||+|+|||+||+-||..+ ..||...++-.|..--|+|+--+. +..|+..|. +++-+||||||+|++..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 469999999999999999999999 899999999888764446765544 455776654 34568999999999982
Q ss_pred h----------HHHHHHHHHHHHHHh
Q 000973 779 N----------AHEQLRAVLLTLLEE 794 (1205)
Q Consensus 779 ~----------~~~~~~~~ll~lL~~ 794 (1205)
. .++-+...||.+|.+
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 2 345667778999876
No 368
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.32 E-value=8.1e-07 Score=107.95 Aligned_cols=195 Identities=20% Similarity=0.201 Sum_probs=115.3
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
.+..++|.......+...+.. + .....+++|+|++||||+++|+++....... ..+|+.++|..+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~v~v~c~~~~~ 203 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------I-APSDITVLLLGESGTGKEVLARALHQLSDRK--DKRFVAINCAAIPE 203 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCcCHHHHHHHHHHhCCcC--CCCeEEEECCCCCh
Confidence 345677777777666664432 1 1334579999999999999999999876433 35688888876543
Q ss_pred HHHHHH-----H-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-------
Q 000973 457 KWVGEA-----E-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS------- 517 (1205)
Q Consensus 457 ~~~g~~-----e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~------- 517 (1205)
..+... . ......|.. ....+||||||+.|. ..++..|+.+++...-
T Consensus 204 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 204 NLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred HHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCc
Confidence 222110 0 000111222 224599999999884 4566677777753210
Q ss_pred --CCcEEEEccccccc-------cccccccCCCCccccccCCCCCchhhhh----hhhccccc----cC---CCCchhHH
Q 000973 518 --RGQVVLIGATNRVD-------AIDGALRRPGRFDREFNFPLPGCEARAE----ILDIHTRK----WK---QPPSRELK 577 (1205)
Q Consensus 518 --~~~viVI~atn~~~-------~ld~aL~r~gRf~~~I~~~~P~~eer~~----Il~~~l~~----~~---~~~~~~~l 577 (1205)
..++.||++|+..- .+.+.|.. |+ ..+.+..|...+|.+ ++..++.. ++ ..++.+.+
T Consensus 270 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 346 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDAL 346 (445)
T ss_pred eeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 12567788877531 12222222 33 234556666666654 33333332 22 34677777
Q ss_pred HHHhhhhhcccchhHHHHhHHHHH
Q 000973 578 SELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 578 ~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
..|..+.---+.++|++++..|+.
T Consensus 347 ~~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 347 RALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHH
Confidence 777766544567889998887775
No 369
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=5.6e-07 Score=108.50 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=81.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc-----------------------cCccccCCCccccCCCCCCChhhHHHHhhccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE-----------------------KFPVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~-----------------------~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A 760 (1205)
..+||+||+|+|||++|+++|+.+. +..++.++.++ ...-..++.+...+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-------~~~vddIR~Iie~~ 108 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-------NTSVDDIKVILENS 108 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-------CCCHHHHHHHHHHH
Confidence 3699999999999999999998651 11122222211 11234577776665
Q ss_pred ccc----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCcc
Q 000973 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (1205)
Q Consensus 761 ~~~----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~ 836 (1205)
... ...|++|||+|.+.. ...+.|+..|++.++ ..+||++||+ + ..|+..+.++. .+++|..++.+
T Consensus 109 ~~~P~~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp~-~v~fIlatte-~-~Kl~~tI~SRc---~~~~f~~l~~~ 178 (491)
T PRK14964 109 CYLPISSKFKVYIIDEVHMLSN----SAFNALLKTLEEPAP-HVKFILATTE-V-KKIPVTIISRC---QRFDLQKIPTD 178 (491)
T ss_pred HhccccCCceEEEEeChHhCCH----HHHHHHHHHHhCCCC-CeEEEEEeCC-h-HHHHHHHHHhh---eeeecccccHH
Confidence 432 346999999998864 344567777776654 2445555544 4 45554222222 57889999999
Q ss_pred chhhhHHHHHHH
Q 000973 837 DRSLFLGRLIEA 848 (1205)
Q Consensus 837 eR~~i~~~~l~~ 848 (1205)
+...+++.++.+
T Consensus 179 el~~~L~~ia~~ 190 (491)
T PRK14964 179 KLVEHLVDIAKK 190 (491)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 370
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=6.2e-07 Score=111.04 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=81.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccC-----------------------ccccCCCccccCCCCCCChhhHHHHhhcccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKF-----------------------PVHSLGLPALLSDPSAKTPEEALVHIFGEAR 761 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~-----------------------~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~ 761 (1205)
.+||+||+|||||++|+++|+.+... +++.++.. .+..-..++++...+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa-------s~~~vd~ir~i~~~v~ 112 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA-------SNNGVDEIRDIRDKVK 112 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc-------ccCCHHHHHHHHHHHh
Confidence 48999999999999999999986311 11111110 1122345667766655
Q ss_pred cc----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccc
Q 000973 762 RT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTED 837 (1205)
Q Consensus 762 ~~----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~e 837 (1205)
.. ...|+||||+|.+... ..+.|+..|.+.+. ..+||++|| .+ ..|++.+.++. .++.|..|+..+
T Consensus 113 ~~p~~~~~kViIIDE~~~Lt~~----a~naLLKtLEepp~-~~ifIlatt-~~-~ki~~tI~SRc---~~~~f~~~~~~e 182 (559)
T PRK05563 113 YAPSEAKYKVYIIDEVHMLSTG----AFNALLKTLEEPPA-HVIFILATT-EP-HKIPATILSRC---QRFDFKRISVED 182 (559)
T ss_pred hCcccCCeEEEEEECcccCCHH----HHHHHHHHhcCCCC-CeEEEEEeC-Ch-hhCcHHHHhHh---eEEecCCCCHHH
Confidence 32 3469999999998643 35566666766443 345555554 45 56665332222 467799999888
Q ss_pred hhhhHHHHHHH
Q 000973 838 RSLFLGRLIEA 848 (1205)
Q Consensus 838 R~~i~~~~l~~ 848 (1205)
...+++.++.+
T Consensus 183 i~~~L~~i~~~ 193 (559)
T PRK05563 183 IVERLKYILDK 193 (559)
T ss_pred HHHHHHHHHHH
Confidence 88888877754
No 371
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.32 E-value=2.2e-06 Score=95.78 Aligned_cols=74 Identities=32% Similarity=0.475 Sum_probs=49.5
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHH-HHH-HHHHHHhhcCCceEEEeccCCc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAER-QLK-LLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~-~l~-~lf~~a~~~~p~VL~IDEid~L 489 (1205)
...+++|+||||||||+||.|||+++...+..+.| +...+++...-..... ... .+.... ....|||||||...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f--~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF--ITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--EEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 56799999999999999999999999866655544 4556776654332221 111 122212 22359999999654
No 372
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.31 E-value=6.1e-07 Score=105.62 Aligned_cols=135 Identities=15% Similarity=0.228 Sum_probs=80.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccc---------------cCCCccccC-CCCCCChhhHHHHhhcccccc----
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVH---------------SLGLPALLS-DPSAKTPEEALVHIFGEARRT---- 763 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~---------------~l~~~~l~~-~~~~g~se~~~~~lf~~A~~~---- 763 (1205)
..+||+||||+|||++|++++..+..-... .-..++++. .......-..+++++..+...
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~ 116 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSG 116 (355)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccC
Confidence 358999999999999999999886211000 000011110 000112233466677665432
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...||+|||+|.+... ..+.|+..|++.+. .+++|.+|+.+ ..|.+.+..++ .+++|++|+.++...+++
T Consensus 117 ~~~vviidea~~l~~~----~~~~Ll~~le~~~~--~~~lIl~~~~~-~~l~~~l~sr~---~~~~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS----AFNALLKTLEEPPE--HVVFILATTEP-HKIPATILSRC---QRFDFKRIPLEDIVERLK 186 (355)
T ss_pred CceEEEEeChhhcCHH----HHHHHHHHHhCCcc--ceeEEEEeCCH-HHHHHHHHhhe---eEEEcCCCCHHHHHHHHH
Confidence 2359999999987543 34456666655443 44555556655 45544233333 578899999999988888
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
..+..
T Consensus 187 ~~~~~ 191 (355)
T TIGR02397 187 KILDK 191 (355)
T ss_pred HHHHH
Confidence 88764
No 373
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.31 E-value=2.8e-06 Score=94.09 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=50.6
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH---HHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA---ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~---e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
.+++|+|+||||||+|+.+||+.+...+..+. .++..+++..+.... ......++.... ..+||+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~--~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVL--IITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE--EEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 48999999999999999999999987665554 445666665443321 112233444433 46799999998764
No 374
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=6.9e-07 Score=110.13 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=76.7
Q ss_pred eeeecCCCCCCCccchhhhhhcccC------cc------ccCCC-----cccc-CCCCCCChhhHHHHhhccccc----c
Q 000973 706 LLLCGSEGTGVDHLGPAILHELEKF------PV------HSLGL-----PALL-SDPSAKTPEEALVHIFGEARR----T 763 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~~------~~------~~l~~-----~~l~-~~~~~g~se~~~~~lf~~A~~----~ 763 (1205)
+||+||+|||||++|+++|+.+... ++ ..+.. .+++ .+-.....-..++++...+.. .
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~ 117 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQS 117 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC
Confidence 7999999999999999999986311 00 00000 0110 000000012334544443322 2
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
..-|++|||+|.+... ..+.|+..|.+.+. ..+||++| +.+ ..|.+.+.++ -.+|+|..++.++...+++
T Consensus 118 ~~KVvIIDEah~Lt~~----A~NALLK~LEEpp~-~~~fIL~t-te~-~kll~TI~SR---c~~~~F~~l~~~~i~~~L~ 187 (584)
T PRK14952 118 RYRIFIVDEAHMVTTA----GFNALLKIVEEPPE-HLIFIFAT-TEP-EKVLPTIRSR---THHYPFRLLPPRTMRALIA 187 (584)
T ss_pred CceEEEEECCCcCCHH----HHHHHHHHHhcCCC-CeEEEEEe-CCh-HhhHHHHHHh---ceEEEeeCCCHHHHHHHHH
Confidence 3459999999998654 45567777776554 34444454 444 3444322222 2578899999888888887
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
.++.+
T Consensus 188 ~i~~~ 192 (584)
T PRK14952 188 RICEQ 192 (584)
T ss_pred HHHHH
Confidence 77654
No 375
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=7.6e-07 Score=109.87 Aligned_cols=134 Identities=15% Similarity=0.232 Sum_probs=79.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc------------CCCc---ccc-CCCCCCChhhHHHHhhccccc----cC
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS------------LGLP---ALL-SDPSAKTPEEALVHIFGEARR----TT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~------------l~~~---~l~-~~~~~g~se~~~~~lf~~A~~----~~ 764 (1205)
.+||+||+|||||++|+++++.+..-.... +... +++ .+-..+.....++.++..+.. ..
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk 119 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGK 119 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCC
Confidence 589999999999999999999863211100 0000 110 000012223456777665432 23
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..||||||+|.+.. ...+.|+..|.+... .+.+|.+|+.+ ..+...+.++. ..|.|..++.++...+++.
T Consensus 120 ~KVIIIDEad~Ls~----~A~NALLKtLEEPp~--~v~fILaTtd~-~kL~~TIrSRC---~~f~f~~Ls~eeI~~~L~~ 189 (709)
T PRK08691 120 YKVYIIDEVHMLSK----SAFNAMLKTLEEPPE--HVKFILATTDP-HKVPVTVLSRC---LQFVLRNMTAQQVADHLAH 189 (709)
T ss_pred cEEEEEECccccCH----HHHHHHHHHHHhCCC--CcEEEEEeCCc-cccchHHHHHH---hhhhcCCCCHHHHHHHHHH
Confidence 46999999998754 345567777776554 34444445555 44444222222 3566778888888888888
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++.+
T Consensus 190 Il~k 193 (709)
T PRK08691 190 VLDS 193 (709)
T ss_pred HHHH
Confidence 7764
No 376
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.29 E-value=5.5e-07 Score=101.68 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=79.1
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh-----------hcCCc
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ-----------RNQPS 479 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~-----------~~~p~ 479 (1205)
...+++||+||+|||||++++.+-..+....+.+. .++.+... +...++.+++... .++.+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~--~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~l 102 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVI--TINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKL 102 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEE--EEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCcccccee--EeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEE
Confidence 34568999999999999999987766643322222 22322211 1222333332211 12346
Q ss_pred eEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc--------CCcEEEEccccccc---cccccccCCCCcccccc
Q 000973 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--------RGQVVLIGATNRVD---AIDGALRRPGRFDREFN 548 (1205)
Q Consensus 480 VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~--------~~~viVI~atn~~~---~ld~aL~r~gRf~~~I~ 548 (1205)
|+||||++.-.+. ..+.+..-+++.+++..= +... -.++.+|+|+++.. .|++.|.| .| .++.
T Consensus 103 v~fiDDlN~p~~d--~ygtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 103 VLFIDDLNMPQPD--KYGTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp EEEEETTT-S-----TTS--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred EEEecccCCCCCC--CCCCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 9999999754332 222222233444443321 1111 13578888888643 37888887 56 6899
Q ss_pred CCCCCchhhhhhhhccccc
Q 000973 549 FPLPGCEARAEILDIHTRK 567 (1205)
Q Consensus 549 ~~~P~~eer~~Il~~~l~~ 567 (1205)
++.|+.+....|+..++..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999999877654
No 377
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.29 E-value=1e-06 Score=106.61 Aligned_cols=149 Identities=22% Similarity=0.322 Sum_probs=91.5
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEE-----EEec
Q 000973 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSF-----YMRK 450 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~-----~~i~ 450 (1205)
.+|.++.|+..++..+.-. +....+++|+||||||||++++.++..+........+ +.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 3677888887776665221 2345689999999999999999999766322111110 1110
Q ss_pred ch-----hh-------------HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHh
Q 000973 451 GA-----DV-------------LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (1205)
Q Consensus 451 ~~-----~l-------------~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~l 512 (1205)
+. .+ ....+|.....-...+..|..+ ||||||++.+ ...++..|+..|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHH
Confidence 00 00 0011222111112344444444 9999999766 356777788877
Q ss_pred hCcc-----------cCCcEEEEccccccc---------------------cccccccCCCCccccccCCCCCch
Q 000973 513 DGLD-----------SRGQVVLIGATNRVD---------------------AIDGALRRPGRFDREFNFPLPGCE 555 (1205)
Q Consensus 513 d~~~-----------~~~~viVI~atn~~~---------------------~ld~aL~r~gRf~~~I~~~~P~~e 555 (1205)
+.-. ...++.+|+|+|+.. .|+..++. ||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 5322 124689999999853 25667777 99999999988765
No 378
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.7e-06 Score=102.45 Aligned_cols=132 Identities=15% Similarity=0.288 Sum_probs=79.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCcccc-------CCCccccCCCCCCChhhHHHHhhcccccc----CCceeeecc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS-------LGLPALLSDPSAKTPEEALVHIFGEARRT----TPSILYIPQ 772 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~-------l~~~~l~~~~~~g~se~~~~~lf~~A~~~----~p~ILfiDE 772 (1205)
+.+||+||||+|||++|+++++.+.. +... ++.-++ ... .......++.++..+... .+.||||||
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~-~~~~~~~~~~~~~~~~l-~~~-~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQ-PGYDDPNEDFSFNIFEL-DAA-SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCCCCCCCcceEEe-ccc-cCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 47999999999999999999998632 1111 000001 110 111234566777655432 346999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 773 id~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
+|.+... ..+.|+..|+..+. ..++|++|++ + ..+.+.+.++. .+++|..|+.++...++...+.+
T Consensus 117 ~~~l~~~----~~~~ll~~le~~~~-~~~~Il~~~~-~-~kl~~~l~sr~---~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 117 VHMLSSA----AFNAFLKTLEEPPA-HAIFILATTE-K-HKIIPTILSRC---QIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred hhhcCHH----HHHHHHHHHhCCCC-ceEEEEEeCC-c-ccCCHHHHhcc---eeEecCCccHHHHHHHHHHHHHH
Confidence 9987643 34556666655332 3445555444 4 34444222222 57889999988888888777654
No 379
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=4.8e-07 Score=99.47 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=76.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQL 784 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~ 784 (1205)
.++|+|++|+|||||++++++.. +..++... .+.. +.+..+. . .+|+||+++.+. .....+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~--~~~~--------~~~~~~~----~---~~l~iDDi~~~~-~~~~~l 106 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-DALLIHPN--EIGS--------DAANAAA----E---GPVLIEDIDAGG-FDETGL 106 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-CCEEecHH--Hcch--------HHHHhhh----c---CeEEEECCCCCC-CCHHHH
Confidence 48999999999999999999865 33332221 1110 1111111 1 478899999863 233444
Q ss_pred HHHHHHHHHhcCCCCCeEEeccCCcCCccc---cCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 785 RAVLLTLLEELPSHLPILLLGSSSVPLAEV---EGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 785 ~~~ll~lL~~~~~~~~v~vIattn~~~~~L---d~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
+. +++.+......+||+++..| ..+ .+.+.+++.+..++++..|+.++|.+|++..+..
T Consensus 107 f~----l~n~~~~~g~~ilits~~~p-~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 107 FH----LINSVRQAGTSLLMTSRLWP-SSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred HH----HHHHHHhCCCeEEEECCCCh-HHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 44 44443333344555544433 333 3467777776789999999999999999988863
No 380
>PHA02244 ATPase-like protein
Probab=98.28 E-value=5.2e-07 Score=103.83 Aligned_cols=120 Identities=13% Similarity=0.195 Sum_probs=73.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCc----cccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLP----ALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA 780 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~----~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~ 780 (1205)
.+||.||||||||++|++||+.+ +.+|+.++.- .+. ++. .........-|-.|. ..+++||||||+.+.+.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d~~~L~-G~i-~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMDEFELK-GFI-DANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChHHHhhc-ccc-cccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 48999999999999999999998 7888887631 111 111 111111111122222 245899999999877654
Q ss_pred HHHHHHHHHHHHHh---------cCCCCCeEEeccCCcCC----------ccccCCCccccCCCceeeecCCCc
Q 000973 781 HEQLRAVLLTLLEE---------LPSHLPILLLGSSSVPL----------AEVEGDPSTVFPLRSVYQVEKPST 835 (1205)
Q Consensus 781 ~~~~~~~ll~lL~~---------~~~~~~v~vIattn~~~----------~~Ld~~~~~~f~~r~ii~~~~P~~ 835 (1205)
.. .|+.+|+. +....++.||+|+|.+. ..|++....+| .+++|..|+.
T Consensus 197 q~----~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF---v~I~~dyp~~ 263 (383)
T PHA02244 197 LI----IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF---APIEFDYDEK 263 (383)
T ss_pred HH----HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc---EEeeCCCCcH
Confidence 43 34455542 11235788999999742 23444333444 3677888873
No 381
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.28 E-value=2.7e-06 Score=103.70 Aligned_cols=209 Identities=15% Similarity=0.191 Sum_probs=111.6
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEE-EEEe--
Q 000973 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVS-FYMR-- 449 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~-~~~i-- 449 (1205)
....+.++|+-...-+++|+.++..-+ .+....+-+||+||||||||++++.||++++....... -+.+
T Consensus 13 y~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 13 YAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred cCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 355678889888888888888876421 12233456889999999999999999999964321110 0000
Q ss_pred ---cchhhHH------HHHHHHHHHHHHH-HHHHhh-----------cCCceEEEeccCCcccccchhhhHHHHHHHHHH
Q 000973 450 ---KGADVLS------KWVGEAERQLKLL-FEEAQR-----------NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTL 508 (1205)
Q Consensus 450 ---~~~~l~~------~~~g~~e~~l~~l-f~~a~~-----------~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~L 508 (1205)
...++.+ .|...... ...+ +..++. ....||+|+|+-.++... ...+...|
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~-F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L 156 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDK-FSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFREAL 156 (519)
T ss_pred cccccccccccccccccccchhhh-hccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHHHH
Confidence 0001110 01111111 1111 121111 235699999997654221 13333344
Q ss_pred HHHhhCcccCC-cEEEEcc-cc------cc--------ccccccccCCCCccccccCCCCCchhhhhhhhcccccc----
Q 000973 509 LALMDGLDSRG-QVVLIGA-TN------RV--------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---- 568 (1205)
Q Consensus 509 l~~ld~~~~~~-~viVI~a-tn------~~--------~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~---- 568 (1205)
..++.. ... .+|||.+ +. .. ..+++.++...++ ..|.|.+-...-....|...+...
T Consensus 157 ~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 157 RQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 444442 222 5666655 11 11 0244555443333 568887777765555555444432
Q ss_pred ----CCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHH
Q 000973 569 ----KQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (1205)
Q Consensus 569 ----~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~ 604 (1205)
.......+++.|+..+. +||+.++......+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 12222345677776644 599998877666665
No 382
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.5e-06 Score=100.45 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=89.9
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcC--------------------CeEEEEEecchhh---HHHH-HHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG--------------------QKVSFYMRKGADV---LSKW-VGEAERQL 466 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~--------------------~~~~~~~i~~~~l---~~~~-~g~~e~~l 466 (1205)
+.+..+||+||+|+|||++|+++|+.+.... ..-.|+.+....- -++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 4456799999999999999999999874321 0112333332110 0000 00123455
Q ss_pred HHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCC
Q 000973 467 KLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGR 542 (1205)
Q Consensus 467 ~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gR 542 (1205)
+.+.+.+.. ....|++||+++.|- ....+.|+..|+... .++.+|.+|+.+..+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 555555543 334599999999883 445666888888653 345666688888889999988 7
Q ss_pred ccccccCCCCCchhhhhhhhc
Q 000973 543 FDREFNFPLPGCEARAEILDI 563 (1205)
Q Consensus 543 f~~~I~~~~P~~eer~~Il~~ 563 (1205)
+ ..+.|++|+.++..+.|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 7 7789999999888877754
No 383
>PRK09183 transposase/IS protein; Provisional
Probab=98.27 E-value=2.5e-06 Score=95.76 Aligned_cols=105 Identities=27% Similarity=0.387 Sum_probs=63.0
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHH-HHHHHHHHHHHHhhcCCceEEEeccCCc
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~-~e~~l~~lf~~a~~~~p~VL~IDEid~L 489 (1205)
....+++|+||||||||+|+.+|+..+...+..+.|+ +..+++..+... ....+..++... ...+.+|+|||++.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~--~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT--TAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--eHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3456899999999999999999998876666666554 445555433221 112233444443 245679999999765
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 490 ~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.... .....|+.+++.....+. +|.|||.
T Consensus 177 ~~~~---------~~~~~lf~li~~r~~~~s--~iiTsn~ 205 (259)
T PRK09183 177 PFSQ---------EEANLFFQVIAKRYEKGS--MILTSNL 205 (259)
T ss_pred CCCh---------HHHHHHHHHHHHHHhcCc--EEEecCC
Confidence 3221 122335555544333333 4556665
No 384
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.27 E-value=6.2e-07 Score=104.62 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=90.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccc---------cCCCCCCChhhHHH---HhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPAL---------LSDPSAKTPEEALV---HIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l---------~~~~~~g~se~~~~---~lf~~A~~~~p~ILfi 770 (1205)
.|||+|.+||||..+|++|.+... .-||+.++++.+ |+ +--|....++. .-|+.| ..+-||+
T Consensus 248 tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFG-HeKGAFTGA~~~r~GrFElA---dGGTLFL 323 (550)
T COG3604 248 TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFG-HEKGAFTGAINTRRGRFELA---DGGTLFL 323 (550)
T ss_pred eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhc-ccccccccchhccCcceeec---CCCeEec
Confidence 599999999999999999998763 468999998754 32 11222222222 233333 3468999
Q ss_pred ccchhhHHhHHHHHHHHH-HHHHHhcCC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCccchhh
Q 000973 771 PQFNLWWENAHEQLRAVL-LTLLEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~l-l~lL~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~eR~~ 840 (1205)
|||..+....+..++.+| ...++.+-+ .-.|-|||+||+....+-. .+.|+.. .||.+.+|...+|..
T Consensus 324 DEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~--~G~FRaDLYyRLsV~Pl~lPPLRER~~ 401 (550)
T COG3604 324 DEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVR--DGEFRADLYYRLSVFPLELPPLRERPE 401 (550)
T ss_pred hhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHH--cCcchhhhhhcccccccCCCCcccCCc
Confidence 999999887887765555 222333433 3478899999987554444 6666653 888899999999986
Q ss_pred hH
Q 000973 841 FL 842 (1205)
Q Consensus 841 i~ 842 (1205)
=+
T Consensus 402 DI 403 (550)
T COG3604 402 DI 403 (550)
T ss_pred cH
Confidence 33
No 385
>PRK06921 hypothetical protein; Provisional
Probab=98.26 E-value=2.4e-06 Score=96.28 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=46.2
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCC
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~ 488 (1205)
...+++|+|++|||||+|+.+||+++... +..+.|+ ...+++....... ......+... ....||+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~--~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF--PFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE--EHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999998765 5555444 3444444322211 1122222222 3356999999954
No 386
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1e-06 Score=108.97 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=77.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc-----cc------------cCCC---ccccC-CCCCCChhhHHHHhhcccccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFP-----VH------------SLGL---PALLS-DPSAKTPEEALVHIFGEARRT 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~-----~~------------~l~~---~~l~~-~~~~g~se~~~~~lf~~A~~~ 763 (1205)
.+||+||+|||||++|+++|+.+.... -. .+.. ++++- +-.....-..++++...+...
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~ 119 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYK 119 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhC
Confidence 379999999999999999999873110 00 0000 01110 000011123466666554322
Q ss_pred ----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000973 764 ----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 764 ----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
...|++|||+|.+.... .+.|+..|.+.+. ..+||++||+ + ..+.. . +...-.+|+|..++.++..
T Consensus 120 p~~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEPP~-~~~fIL~Ttd-~-~kil~--T-IlSRc~~~~f~~Ls~eei~ 189 (618)
T PRK14951 120 PVQGRFKVFMIDEVHMLTNTA----FNAMLKTLEEPPE-YLKFVLATTD-P-QKVPV--T-VLSRCLQFNLRPMAPETVL 189 (618)
T ss_pred cccCCceEEEEEChhhCCHHH----HHHHHHhcccCCC-CeEEEEEECC-c-hhhhH--H-HHHhceeeecCCCCHHHHH
Confidence 24599999999986543 4456666665443 3345555544 4 34444 2 2221257788888888888
Q ss_pred hhHHHHHHH
Q 000973 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
.+++.++.+
T Consensus 190 ~~L~~i~~~ 198 (618)
T PRK14951 190 EHLTQVLAA 198 (618)
T ss_pred HHHHHHHHH
Confidence 888877754
No 387
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=9.3e-07 Score=108.69 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=76.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCc------ccc---------CCCccc--cCCCCCCChhhHHHHhhcccc----c
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFP------VHS---------LGLPAL--LSDPSAKTPEEALVHIFGEAR----R 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~------~~~---------l~~~~l--~~~~~~g~se~~~~~lf~~A~----~ 762 (1205)
+.+||+||+|||||++|+++|+.+.... +-. -.-+++ +... ....-..++.+...+. .
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a-~~~~Id~iR~L~~~~~~~p~~ 117 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA-SNRGIDDAKRLKEAIGYAPME 117 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecc-cccCHHHHHHHHHHHHhhhhc
Confidence 4699999999999999999999873110 000 000011 0000 0011123344332222 2
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
....||||||+|.+... ..+.|+..|++... .+++|.+|+.+ ..|...+.++. .+|+|..++.++...++
T Consensus 118 g~~kVIIIDEad~Lt~~----a~naLLk~LEEP~~--~~ifILaTt~~-~kll~TI~SRc---q~i~F~pLs~~eL~~~L 187 (624)
T PRK14959 118 GRYKVFIIDEAHMLTRE----AFNALLKTLEEPPA--RVTFVLATTEP-HKFPVTIVSRC---QHFTFTRLSEAGLEAHL 187 (624)
T ss_pred CCceEEEEEChHhCCHH----HHHHHHHHhhccCC--CEEEEEecCCh-hhhhHHHHhhh---hccccCCCCHHHHHHHH
Confidence 23469999999998643 34556666766433 44444455554 34444222222 46789999999988888
Q ss_pred HHHHHH
Q 000973 843 GRLIEA 848 (1205)
Q Consensus 843 ~~~l~~ 848 (1205)
+.++..
T Consensus 188 ~~il~~ 193 (624)
T PRK14959 188 TKVLGR 193 (624)
T ss_pred HHHHHH
Confidence 876653
No 388
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.2e-06 Score=107.07 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=78.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc------------CC---CccccC-CCCCCChhhHHHHhhccccc----cC
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS------------LG---LPALLS-DPSAKTPEEALVHIFGEARR----TT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~------------l~---~~~l~~-~~~~g~se~~~~~lf~~A~~----~~ 764 (1205)
.+||+||+|||||++|+++|+.+....-.. +. .++++. +......-..++.++..+.. ..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~ 119 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGR 119 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCC
Confidence 489999999999999999999763110000 00 011110 00000111234555554432 23
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..|+||||+|.+.. ...+.|+..|.+.+. ..+||++||+ + ..+.+ . +...-.+++|..++.++...+++.
T Consensus 120 ~kViIIDEa~~ls~----~a~naLLK~LEepp~-~v~fIL~Ttd-~-~kil~--t-I~SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 120 YKVYLIDEVHMLSK----QSFNALLKTLEEPPE-YVKFILATTD-Y-HKIPV--T-ILSRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred cEEEEEechhhccH----HHHHHHHHHHhcCCC-CceEEEEECC-h-hhhhh--h-HHHheeeEEeCCCCHHHHHHHHHH
Confidence 46999999998764 344567777776543 3445556655 4 44444 2 222126888999999998888887
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++.+
T Consensus 190 il~~ 193 (546)
T PRK14957 190 ILAK 193 (546)
T ss_pred HHHH
Confidence 7754
No 389
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=8.4e-07 Score=94.83 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=76.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccC------ccc------cC---CCccc--cCCCCCCChhhHHHHhhccccc----
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKF------PVH------SL---GLPAL--LSDPSAKTPEEALVHIFGEARR---- 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~------~~~------~l---~~~~l--~~~~~~g~se~~~~~lf~~A~~---- 762 (1205)
..+||+||+|+|||++|++++..+... +.. .+ .-+++ +........-+.++++...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 459999999999999999999986321 000 00 00111 0000000122456555655544
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
....||+|||+|.+.... .+.|+..|+..+. ..++| .+|+.+ ..|.+.+.++. .+++|.+|+.++...++
T Consensus 95 ~~~kviiide~~~l~~~~----~~~Ll~~le~~~~-~~~~i-l~~~~~-~~l~~~i~sr~---~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA----ANALLKTLEEPPP-NTLFI-LITPSP-EKLLPTIRSRC---QVLPFPPLSEEALLQWL 164 (188)
T ss_pred CCeEEEEEechhhhCHHH----HHHHHHHhcCCCC-CeEEE-EEECCh-HhChHHHHhhc---EEeeCCCCCHHHHHHHH
Confidence 334699999999986543 3457777777443 34444 445555 56665333222 58889999988876666
Q ss_pred HH
Q 000973 843 GR 844 (1205)
Q Consensus 843 ~~ 844 (1205)
+.
T Consensus 165 ~~ 166 (188)
T TIGR00678 165 IR 166 (188)
T ss_pred HH
Confidence 54
No 390
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.25 E-value=5.3e-07 Score=106.37 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=68.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccC-c-----cccCCC----ccccCCCC---CCCh--hhHHHHhhcccccc--CCc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKF-P-----VHSLGL----PALLSDPS---AKTP--EEALVHIFGEARRT--TPS 766 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~-~-----~~~l~~----~~l~~~~~---~g~s--e~~~~~lf~~A~~~--~p~ 766 (1205)
..++|+||||||||++|+.+|+.+.+- . ++.+.. .+++.++. +|-. ...+.+++..|+.. .|+
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 469999999999999999999876321 1 112211 12222221 1110 01233444555543 579
Q ss_pred eeeeccchhhHHhHHHHHHHHHHHHHHh--------------------cCCCCCeEEeccCCcCCc----cccCCCcccc
Q 000973 767 ILYIPQFNLWWENAHEQLRAVLLTLLEE--------------------LPSHLPILLLGSSSVPLA----EVEGDPSTVF 822 (1205)
Q Consensus 767 ILfiDEid~l~~~~~~~~~~~ll~lL~~--------------------~~~~~~v~vIattn~~~~----~Ld~~~~~~f 822 (1205)
|||||||+.... ++++..|.++|+. +.--.++.||||.|.. + .||. |.+|
T Consensus 275 vliIDEINRani---~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~-Drs~~~lD~--AlrR 348 (459)
T PRK11331 275 VFIIDEINRANL---SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA-DRSLAVVDY--ALRR 348 (459)
T ss_pred EEEEehhhccCH---HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcc-ccchhhccH--HHHh
Confidence 999999998542 3445555565552 1113589999999987 3 4665 6666
Q ss_pred CC
Q 000973 823 PL 824 (1205)
Q Consensus 823 ~~ 824 (1205)
++
T Consensus 349 RF 350 (459)
T PRK11331 349 RF 350 (459)
T ss_pred hh
Confidence 54
No 391
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.7e-06 Score=107.26 Aligned_cols=131 Identities=26% Similarity=0.352 Sum_probs=95.8
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH--
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-- 456 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-- 456 (1205)
..|+|+++++.+|-++|..... .+... .+.-.+||.||.|+|||-||++||..+. +..-.|+.++.+++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~--gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA--GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc--ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhhhh
Confidence 4589999999999999876321 11111 3556799999999999999999999984 3456788888875432
Q ss_pred -------HHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc---------CCc
Q 000973 457 -------KWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQ 520 (1205)
Q Consensus 457 -------~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---------~~~ 520 (1205)
.|+|..+ ...+.+..+....+||||||||.- +..++..|+.+|+...- -++
T Consensus 635 kligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 2444333 346777777777899999999744 56788888888885432 247
Q ss_pred EEEEccccc
Q 000973 521 VVLIGATNR 529 (1205)
Q Consensus 521 viVI~atn~ 529 (1205)
+|||+|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 899999886
No 392
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.5e-06 Score=104.97 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=77.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCc-------cc------cCC---CccccCCCCCCCh---hhHHHHhhcccc---
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFP-------VH------SLG---LPALLSDPSAKTP---EEALVHIFGEAR--- 761 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~-------~~------~l~---~~~l~~~~~~g~s---e~~~~~lf~~A~--- 761 (1205)
..+||+||+|+|||++|+++|+.+.... .. .+. -..++ .+ .|.+ -..++++...+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~-~i-~g~~~~gid~ir~i~~~l~~~~ 117 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL-EI-DGASHRGIEDIRQINETVLFTP 117 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE-Ee-eccccCCHHHHHHHHHHHHhhh
Confidence 3589999999999999999999862210 00 000 00010 00 1111 123333322221
Q ss_pred -ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhh
Q 000973 762 -RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 762 -~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
.....||+|||+|.+... ..+.|+..|+..+. .+++|.+|+.+ ..|.+.+.++. .+++|..++.++...
T Consensus 118 ~~~~~kvvIIdead~lt~~----~~n~LLk~lEep~~--~~~~Il~t~~~-~kl~~tI~sRc---~~v~f~~l~~~el~~ 187 (451)
T PRK06305 118 SKSRYKIYIIDEVHMLTKE----AFNSLLKTLEEPPQ--HVKFFLATTEI-HKIPGTILSRC---QKMHLKRIPEETIID 187 (451)
T ss_pred hcCCCEEEEEecHHhhCHH----HHHHHHHHhhcCCC--CceEEEEeCCh-HhcchHHHHhc---eEEeCCCCCHHHHHH
Confidence 234679999999988643 34567777777544 44444455655 44544222222 578899999988888
Q ss_pred hHHHHHHH
Q 000973 841 FLGRLIEA 848 (1205)
Q Consensus 841 i~~~~l~~ 848 (1205)
+++..+..
T Consensus 188 ~L~~~~~~ 195 (451)
T PRK06305 188 KLALIAKQ 195 (451)
T ss_pred HHHHHHHH
Confidence 77776653
No 393
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.23 E-value=2.7e-06 Score=98.28 Aligned_cols=103 Identities=19% Similarity=0.323 Sum_probs=62.1
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH---HHHHHHHHHHHhhcCCceEEEeccCCc
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA---ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~---e~~l~~lf~~a~~~~p~VL~IDEid~L 489 (1205)
..+++|+||+|||||+||.+||+++...+..+.| ++..+++..+.... .......+.... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y--~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY--RTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE--EEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999999877765544 44566655432210 011111123322 3469999999765
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 490 APVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 490 ~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
.. .......|+.+++.....+.-+|| |||.
T Consensus 259 ~~---------t~~~~~~Lf~iin~R~~~~k~tIi-TSNl 288 (329)
T PRK06835 259 KI---------TEFSKSELFNLINKRLLRQKKMII-STNL 288 (329)
T ss_pred CC---------CHHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 32 123345566666654443333444 5554
No 394
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.3e-06 Score=107.03 Aligned_cols=133 Identities=11% Similarity=0.166 Sum_probs=80.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC---------------Ccccc--CCCCCCChhhHHHHhhcccccc----
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG---------------LPALL--SDPSAKTPEEALVHIFGEARRT---- 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~---------------~~~l~--~~~~~g~se~~~~~lf~~A~~~---- 763 (1205)
.+||+||+|||||++|+++|+.+........+ .++++ ... ....-..++.+...+...
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-s~igVd~IReIi~~~~~~P~~~ 118 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA-SNNGVDEIRNIIDNINYLPTTF 118 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc-cccCHHHHHHHHHHHHhchhhC
Confidence 59999999999999999999986321111000 01110 100 001123466666554433
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...|++|||+|.+... ..+.|+..|.+.+. ..++|++ |+.+ ..|.+.+.++. .+++|..++.++...+++
T Consensus 119 ~~KVIIIDEad~Lt~~----A~NaLLKtLEEPp~-~tvfIL~-Tt~~-~KLl~TI~SRc---q~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS----AWNALLKTLEEPPK-HVVFIFA-TTEF-QKIPLTIISRC---QRYNFKKLNNSELQELLK 188 (605)
T ss_pred CcEEEEEechHhCCHH----HHHHHHHHHHhCCC-cEEEEEE-CCCh-HhhhHHHHhhh---hhcccCCCCHHHHHHHHH
Confidence 2359999999988643 34567777777654 3444444 4445 55554222222 478899999999888888
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
..+..
T Consensus 189 ~il~k 193 (605)
T PRK05896 189 SIAKK 193 (605)
T ss_pred HHHHH
Confidence 87754
No 395
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.22 E-value=8.6e-07 Score=102.93 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=84.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC----CCCCh----hh---HHHHhhccccccCCceeeec
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKTP----EE---ALVHIFGEARRTTPSILYIP 771 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~----~~g~s----e~---~~~~lf~~A~~~~p~ILfiD 771 (1205)
.|||.|++||||+++|++|.+... +.||+.+++..+-... ..|.. .. .-..+|.. ...++||||
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~Ld 100 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFER---ADGGTLFLD 100 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhh---CCCCEEEeC
Confidence 499999999999999999987652 4689999886542110 00100 00 00112333 345799999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhcC---------CCCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccc
Q 000973 772 QFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTED 837 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~~---------~~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~e 837 (1205)
||+.|....+..++. +|+.-. -..+|-||+||+.....+-. ...|+. + .++.|..|...+
T Consensus 101 ei~~L~~~~Q~~Ll~----~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~--~g~fr~dL~~rl~~~~i~lPpLRe 174 (329)
T TIGR02974 101 ELATASLLVQEKLLR----VIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA--EGRFRADLLDRLAFDVITLPPLRE 174 (329)
T ss_pred ChHhCCHHHHHHHHH----HHHcCcEEecCCCceeccceEEEEechhhHHHHhh--cCchHHHHHHHhcchhcCCCchhh
Confidence 999998777766544 443311 12467888999875333322 333321 2 467789999999
Q ss_pred hhhhHHHHHHHH
Q 000973 838 RSLFLGRLIEAA 849 (1205)
Q Consensus 838 R~~i~~~~l~~~ 849 (1205)
|..=+..++..+
T Consensus 175 R~eDI~~L~~~f 186 (329)
T TIGR02974 175 RQEDIMLLAEHF 186 (329)
T ss_pred hhhhHHHHHHHH
Confidence 987666555543
No 396
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.21 E-value=3.8e-06 Score=96.38 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=50.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHH-HHHHHHHHHHhhcCCceEEEeccCCc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e-~~l~~lf~~a~~~~p~VL~IDEid~L 489 (1205)
...|++|+||+|||||+|+.|||+++...+..+.|+.+ .+++..+..... ..+...+.... ...||+||||...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~--~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF--PEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH--HHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 45799999999999999999999999887777766554 455544322211 12233344332 3469999999654
No 397
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.1e-06 Score=107.13 Aligned_cols=134 Identities=15% Similarity=0.198 Sum_probs=81.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccc-------cC----C-Ccccc-CCCCCCChhhHHHHhhcccccc----CCce
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVH-------SL----G-LPALL-SDPSAKTPEEALVHIFGEARRT----TPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~-------~l----~-~~~l~-~~~~~g~se~~~~~lf~~A~~~----~p~I 767 (1205)
.+||+||+|||||++|+++|+.+...... .. + -++++ .+-........++++...+... ...|
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV 121 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKI 121 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEE
Confidence 47999999999999999999986211100 00 0 00111 0000011234467776665543 3469
Q ss_pred eeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 768 LYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 768 LfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
++|||+|.+... ..+.|+..|.+.+. ..+||++| +.+ ..|++.+.++. .++.|.+++.++...+++..+.
T Consensus 122 ~IIDEa~~LT~~----A~NALLKtLEEPP~-~tifILaT-te~-~KLl~TI~SRc---q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 122 YIIDEVHMLSKS----AFNALLKTLEEPPK-HVIFILAT-TEV-HKIPLTILSRV---QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred EEEEChhhCCHH----HHHHHHHHhhcCCC-ceEEEEEc-CCh-hhhhHHHHhhc---eeEEccCCCHHHHHHHHHHHHH
Confidence 999999987653 45567777777554 33455554 445 56655222222 4788999999998888887775
Q ss_pred H
Q 000973 848 A 848 (1205)
Q Consensus 848 ~ 848 (1205)
+
T Consensus 192 k 192 (725)
T PRK07133 192 K 192 (725)
T ss_pred H
Confidence 4
No 398
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.4e-06 Score=108.46 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=78.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc------------C---CCcccc--CCCCCCChhhHHHHhhcccccc----
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS------------L---GLPALL--SDPSAKTPEEALVHIFGEARRT---- 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~------------l---~~~~l~--~~~~~g~se~~~~~lf~~A~~~---- 763 (1205)
.+||+||+|||||++|+++++.+..-.-.. + +..+++ .+. .......++.+...+...
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~-s~~~v~~ir~l~~~~~~~p~~~ 118 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA-SNTGVDDIRELRENVKYLPSRS 118 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc-CccCHHHHHHHHHHHHhccccC
Confidence 479999999999999999999863111100 0 000111 000 011223566666555432
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...|++|||+|.+... ..+.|+..|.+.+. .+++|.+|+.+ ..|.+.+.++. .+|+|..++.++....+.
T Consensus 119 ~~KVvIIdev~~Lt~~----a~naLLk~LEepp~--~~~fIl~t~~~-~kl~~tI~SRc---~~~~f~~l~~~~i~~~L~ 188 (576)
T PRK14965 119 RYKIFIIDEVHMLSTN----AFNALLKTLEEPPP--HVKFIFATTEP-HKVPITILSRC---QRFDFRRIPLQKIVDRLR 188 (576)
T ss_pred CceEEEEEChhhCCHH----HHHHHHHHHHcCCC--CeEEEEEeCCh-hhhhHHHHHhh---hhhhcCCCCHHHHHHHHH
Confidence 2359999999987653 34567777777554 44444444555 55655222222 467788888887777777
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
.++.+
T Consensus 189 ~i~~~ 193 (576)
T PRK14965 189 YIADQ 193 (576)
T ss_pred HHHHH
Confidence 76654
No 399
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-06 Score=101.62 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=91.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc----CccccCCCccccCCC--------------CCC-ChhhHHHHhhccccc-c
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDP--------------SAK-TPEEALVHIFGEARR-T 763 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~----~~~~~l~~~~l~~~~--------------~~g-~se~~~~~lf~~A~~-~ 763 (1205)
..++++|+||||||.+++.++.++.. ..++.+++-.+-+.| ..| .+.+....+++.... .
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 35999999999999999999998632 124555554322111 011 112223333333322 3
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCC-CCCeEEeccCCcC--CccccCCCccccCCCceeeecCCCccchhh
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPS-HLPILLLGSSSVP--LAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~-~~~v~vIattn~~--~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
..-||.+||+|.|....+ ..|.+++..... ...|.||+.+|.. ...|++.+.+.+...+ +.|++++.+|...
T Consensus 123 ~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~ 197 (366)
T COG1474 123 KTVIVILDEVDALVDKDG----EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYD 197 (366)
T ss_pred CeEEEEEcchhhhccccc----hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHH
Confidence 456999999999997665 233333333322 4578889999977 3557777777777555 6699999999999
Q ss_pred hHHHHHHH
Q 000973 841 FLGRLIEA 848 (1205)
Q Consensus 841 i~~~~l~~ 848 (1205)
|++.=.+.
T Consensus 198 Il~~R~~~ 205 (366)
T COG1474 198 ILRERVEE 205 (366)
T ss_pred HHHHHHHh
Confidence 99876653
No 400
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.9e-07 Score=105.66 Aligned_cols=48 Identities=35% Similarity=0.530 Sum_probs=40.2
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
...|.||.|++.+|..|..+.. ...|+||+||||||||+||+-+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4589999999999999966532 34689999999999999999987665
No 401
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.18 E-value=1.8e-06 Score=99.85 Aligned_cols=76 Identities=22% Similarity=0.245 Sum_probs=50.4
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcC-----------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCC
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELP-----------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKP 833 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~-----------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P 833 (1205)
.+|||||||+.+....+ +.|+..|+.-. ...++++|+|+|-....|++.+..+|. ..+.++.|
T Consensus 129 ~GiL~lDEInrl~~~~q----~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~--~~v~v~~~ 202 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIV----DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFG--LSVEVRSP 202 (334)
T ss_pred CCeEEecChHhCCHHHH----HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcc--eEEEcCCC
Confidence 36999999999765444 44566665321 235789999988543346663334443 66777777
Q ss_pred Cc-cchhhhHHHHH
Q 000973 834 ST-EDRSLFLGRLI 846 (1205)
Q Consensus 834 ~~-~eR~~i~~~~l 846 (1205)
.. ++|.+|++...
T Consensus 203 ~~~~e~~~il~~~~ 216 (334)
T PRK13407 203 RDVETRVEVIRRRD 216 (334)
T ss_pred CcHHHHHHHHHHhh
Confidence 66 88899988754
No 402
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.18 E-value=2.8e-06 Score=105.71 Aligned_cols=51 Identities=29% Similarity=0.475 Sum_probs=43.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhh
Q 000973 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASK 439 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (1205)
+...|++|+|+++++..|..++.. ..+++|+||||||||++|+++++.+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 567899999999999998876643 247999999999999999999988754
No 403
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.9e-06 Score=105.97 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=78.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc------------CCC---cccc-CCCCCCChhhHHHHhhcccccc----C
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS------------LGL---PALL-SDPSAKTPEEALVHIFGEARRT----T 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~------------l~~---~~l~-~~~~~g~se~~~~~lf~~A~~~----~ 764 (1205)
.+||+||+|||||++|+++|+.+..-.-.. ++. ++++ .+.........++++...+... .
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~ 119 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGR 119 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCC
Confidence 479999999999999999999872211000 000 0110 0000011234466666655432 2
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..|+||||+|.+... ..+.|+..|.+.+. ..+||++|++ + ..+.+.+.++. .+++|..++.++....+..
T Consensus 120 ~kVvIIDEad~ls~~----a~naLLK~LEepp~-~~~fIL~t~d-~-~kil~tI~SRc---~~~~f~~l~~~~i~~~L~~ 189 (527)
T PRK14969 120 FKVYIIDEVHMLSKS----AFNAMLKTLEEPPE-HVKFILATTD-P-QKIPVTVLSRC---LQFNLKQMPPPLIVSHLQH 189 (527)
T ss_pred ceEEEEcCcccCCHH----HHHHHHHHHhCCCC-CEEEEEEeCC-h-hhCchhHHHHH---HHHhcCCCCHHHHHHHHHH
Confidence 459999999987653 34567777777544 2345555544 4 34444222222 5778889998888888877
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++.+
T Consensus 190 il~~ 193 (527)
T PRK14969 190 ILEQ 193 (527)
T ss_pred HHHH
Confidence 7753
No 404
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.16 E-value=5e-07 Score=113.83 Aligned_cols=98 Identities=26% Similarity=0.380 Sum_probs=86.0
Q ss_pred HHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCC
Q 000973 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDY 978 (1205)
Q Consensus 899 lr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~ 978 (1205)
+...+..|++++...+...+|..||+...+++||.||+.||||.|+++.+....|.+-++|+.|+.||+.|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~-- 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP-- 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc--
Confidence 345667788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeechhhhhhhHhhhhh
Q 000973 979 NGTRIVSRGYELRDAVHGMLS 999 (1205)
Q Consensus 979 ~~s~i~~~A~~l~~~~~~~~~ 999 (1205)
.+.+...+..|...+...|.
T Consensus 1340 -~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1340 -LASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred -hHHHHHHHHHHHHHHHHhhc
Confidence 55577777777666655554
No 405
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.16 E-value=1.9e-06 Score=100.55 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=87.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcc---cCccccCCCccccCCC------------CCCChhhHHHHhhccccccCCceee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDP------------SAKTPEEALVHIFGEARRTTPSILY 769 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~---~~~~~~l~~~~l~~~~------------~~g~se~~~~~lf~~A~~~~p~ILf 769 (1205)
.+|+.|++||||+++|++|..... .-||++++++.+-... +.| ....-..+|..| ..++||
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A---~GGtLf 178 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQA---NGGTLF 178 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheec---CCCEEe
Confidence 599999999999999999986532 4689999987654321 122 112223345444 346999
Q ss_pred eccchhhHHhHHHHHHHHHHHHHHh-----cC----CCCCeEEeccCCcCCccccC-CCc--cccCCCceeeecCCCccc
Q 000973 770 IPQFNLWWENAHEQLRAVLLTLLEE-----LP----SHLPILLLGSSSVPLAEVEG-DPS--TVFPLRSVYQVEKPSTED 837 (1205)
Q Consensus 770 iDEid~l~~~~~~~~~~~ll~lL~~-----~~----~~~~v~vIattn~~~~~Ld~-~~~--~~f~~r~ii~~~~P~~~e 837 (1205)
+|||..+....+.. |+.+|+. +. ....|.+|++|+.. ++. .++ -+++.+.++.|.+|...+
T Consensus 179 LDEI~~LP~~~Q~k----Ll~~le~g~~~rvG~~~~~~~dVRli~AT~~~---l~~~~~~g~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 179 LDEIHRLPPEGQEK----LLRVLEEGEYRRVGGSQPRPVDVRLICATTED---LEEAVLAGADLTRRLNILTITLPPLRE 251 (403)
T ss_pred hhhhhhCCHhHHHH----HHHHHHcCceEecCCCCCcCCCceeeeccccC---HHHHHHhhcchhhhhcCceecCCChhh
Confidence 99999998877766 5566665 21 13477888888854 333 122 344435778899999999
Q ss_pred hhhhHHHHHHH
Q 000973 838 RSLFLGRLIEA 848 (1205)
Q Consensus 838 R~~i~~~~l~~ 848 (1205)
|..=...+++-
T Consensus 252 R~~Di~~L~e~ 262 (403)
T COG1221 252 RKEDILLLAEH 262 (403)
T ss_pred chhhHHHHHHH
Confidence 97544444443
No 406
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.15 E-value=1e-06 Score=108.88 Aligned_cols=88 Identities=19% Similarity=0.405 Sum_probs=80.8
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhh
Q 000973 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRD 992 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~ 992 (1205)
+..+..|........+|+||+||++||++..|+++|.++.|.+..+...|+.++|.||++||.. ||.||..|..|+.
T Consensus 1045 r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~e---gs~~y~d~~~l~~ 1121 (1157)
T KOG0386|consen 1045 RELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEE---GSRVYEDAIVLQS 1121 (1157)
T ss_pred cccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccC---CceechhHHHHHH
Confidence 4456679888899999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred hHhhhhhccCh
Q 000973 993 AVHGMLSQMDP 1003 (1205)
Q Consensus 993 ~~~~~~~~~~~ 1003 (1205)
+|......+..
T Consensus 1122 ~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1122 VFKSARQEISK 1132 (1157)
T ss_pred HHhhhHHHHhc
Confidence 99887765553
No 407
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.15 E-value=1.7e-06 Score=87.72 Aligned_cols=90 Identities=32% Similarity=0.498 Sum_probs=58.3
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
.....|||+|++||||+++|++|+...... ...|+.+++..+. ..+++.+ ....|||+|||.|.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~--~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRA--NGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTC--CS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCcc--CCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 345679999999999999999999876532 3455566665433 3344444 44599999999993
Q ss_pred cccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000973 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 491 ~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
...+..|+.++.... ..++.+|+++.
T Consensus 83 -----------~~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 83 -----------PEAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp -----------HHHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred -----------HHHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 455666777776433 33445555444
No 408
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.15 E-value=6.8e-07 Score=100.22 Aligned_cols=92 Identities=29% Similarity=0.351 Sum_probs=79.6
Q ss_pred HHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceee
Q 000973 905 DVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIV 984 (1205)
Q Consensus 905 ~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~ 984 (1205)
.++.++.....-..|..||.+...|+|.+||+.|||+.|++.|++.+.|.+..+|..|.+||+.||..||.. .+.++
T Consensus 26 hhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~---~Tv~~ 102 (418)
T KOG1828|consen 26 HHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLH---PTVPI 102 (418)
T ss_pred HHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcC---Ccccc
Confidence 344555555566689999999999999999999999999999999999999999999999999999999998 56688
Q ss_pred echhhhhhhHhhhhh
Q 000973 985 SRGYELRDAVHGMLS 999 (1205)
Q Consensus 985 ~~A~~l~~~~~~~~~ 999 (1205)
..|..|..+...+..
T Consensus 103 ~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccchhhcchhh
Confidence 889888877665544
No 409
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.15 E-value=1.2e-06 Score=101.75 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=83.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCC-----CC-------CCChhhHHHHhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD-----PS-------AKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~-----~~-------~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
.|||+|++||||+++|++|.+... +.||+.+++..+-.. .+ .|.... ....|. ....+.|||
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~-~~g~l~---~a~gGtL~l 106 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFE---RADGGTLFL 106 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccc-cCCchh---ccCCCeEEe
Confidence 499999999999999999987653 468999988764210 00 011000 011232 234578999
Q ss_pred ccchhhHHhHHHHHHHHHHHHH-HhcCC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccchhh
Q 000973 771 PQFNLWWENAHEQLRAVLLTLL-EELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~lL-~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~eR~~ 840 (1205)
|||+.|....+..+...|..-- ..+.. ..++-||+||+.....+.. ...|+. + .++.|..|...+|..
T Consensus 107 ~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~--~g~f~~dL~~~l~~~~i~lPpLReR~e 184 (326)
T PRK11608 107 DELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVA--EGKFRADLLDRLAFDVVQLPPLRERQS 184 (326)
T ss_pred CChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHH--cCCchHHHHHhcCCCEEECCChhhhhh
Confidence 9999998877766544432110 00111 1357888888875333322 233321 2 366789999999987
Q ss_pred hHHHHHHHH
Q 000973 841 FLGRLIEAA 849 (1205)
Q Consensus 841 i~~~~l~~~ 849 (1205)
=+..++..+
T Consensus 185 DI~~L~~~f 193 (326)
T PRK11608 185 DIMLMAEHF 193 (326)
T ss_pred hHHHHHHHH
Confidence 555555443
No 410
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.15 E-value=2.6e-06 Score=101.41 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=22.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
.++||.||||||||++|++|++.+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHh
Confidence 469999999999999999999975
No 411
>PRK08116 hypothetical protein; Validated
Probab=98.15 E-value=6.8e-07 Score=100.81 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=61.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC---CCCChhhHHHHhhccccccCCceeeeccchhhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP---SAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~---~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~ 778 (1205)
.+++|+|++||||||||.||++++- +.+++.++.++++..+ +.+........++.... ...+|+||++.....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC
Confidence 3699999999999999999999862 4566666666654321 01111111222333222 236999999954321
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc
Q 000973 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 779 ~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld 815 (1205)
.+.....|..+++..-.. +.-+|.|||.++..|.
T Consensus 193 --t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 193 --TEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELK 226 (268)
T ss_pred --CHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHH
Confidence 223333444555543211 2235668888766654
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.15 E-value=2.1e-05 Score=96.35 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=30.3
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh-hhcCCeEEEEEe
Q 000973 409 HITPPRGVLLCGPPGTGKTLIARALACAA-SKAGQKVSFYMR 449 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l-~~~~~~~~~~~i 449 (1205)
|+...+.+||+||||||||++|..++..- ...+..+.|+..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 67788899999999999999999886543 222445555443
No 413
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.14 E-value=1.8e-06 Score=91.38 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=58.7
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH-HHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~-e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
...+++|+||+|||||+||.++++++...+..+.|+ +..+++....... ......++.... ...+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~--~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI--TASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe--ecCceeccccccccccchhhhcCccc--cccEecccccceee
Confidence 456899999999999999999999998877666554 4556665432211 111223333333 34699999995332
Q ss_pred cccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 491 PVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 491 ~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
. .......|+.+++....+. .+|.|||.
T Consensus 122 ~---------~~~~~~~l~~ii~~R~~~~--~tIiTSN~ 149 (178)
T PF01695_consen 122 L---------SEWEAELLFEIIDERYERK--PTIITSNL 149 (178)
T ss_dssp -----------HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred e---------cccccccchhhhhHhhccc--CeEeeCCC
Confidence 1 1223344555555444332 34447776
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.4e-06 Score=105.53 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=76.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccC------cccc------CC---CccccCCCCCCC---hhhHHHHhhcccc----c
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKF------PVHS------LG---LPALLSDPSAKT---PEEALVHIFGEAR----R 762 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~------~~~~------l~---~~~l~~~~~~g~---se~~~~~lf~~A~----~ 762 (1205)
.+||+||+|+|||++|+++|+.+... ++-. +. ..+++ . +.|. .-..++++...+. .
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~-~-idgas~~~vddIr~l~e~~~~~p~~ 117 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI-E-IDGASNTSVQDVRQIKEEIMFPPAS 117 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE-E-ecCcccCCHHHHHHHHHHHHhchhc
Confidence 48999999999999999999987321 1100 00 00111 0 1121 1234555543322 2
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
....|++|||+|.+... ..+.|+..|...+. .+++|.+|+.+ ..|.+.+.++. .+++|.+++.++...++
T Consensus 118 ~~~KVvIIDEa~~Ls~~----a~naLLK~LEepp~--~~vfI~~tte~-~kL~~tI~SRc---~~~~f~~l~~~el~~~L 187 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNS----AFNALLKTIEEPPP--YIVFIFATTEV-HKLPATIKSRC---QHFNFRLLSLEKIYNML 187 (563)
T ss_pred CCCEEEEEEChhhcCHH----HHHHHHHhhccCCC--CEEEEEecCCh-HHhHHHHHHhc---eEEEecCCCHHHHHHHH
Confidence 34469999999998643 34556666665443 44444444444 45554222222 46889999998888888
Q ss_pred HHHHH
Q 000973 843 GRLIE 847 (1205)
Q Consensus 843 ~~~l~ 847 (1205)
+..+.
T Consensus 188 ~~i~~ 192 (563)
T PRK06647 188 KKVCL 192 (563)
T ss_pred HHHHH
Confidence 77664
No 415
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.13 E-value=2.5e-06 Score=105.29 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=84.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccC--------CCCCCChh---hHHHHhhccccccCCceeeec
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DPSAKTPE---EALVHIFGEARRTTPSILYIP 771 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~--------~~~~g~se---~~~~~lf~~A~~~~p~ILfiD 771 (1205)
.+||+|++||||+++|++|.+... ..||+.++++.+-. ++..|... +.-..+|..| ..+.||||
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~Ld 305 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLD 305 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEe
Confidence 399999999999999999876542 35889998876421 11001100 0011234333 35689999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccc
Q 000973 772 QFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTED 837 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~e 837 (1205)
||+.+....+..+++ +|+.- .. ..+|-||+||+.+...|.. ...|+. + .++.|..|...+
T Consensus 306 eI~~L~~~~Q~~Ll~----~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~--~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 306 EIGEMSPRMQAKLLR----FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ--KGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred ChhhCCHHHHHHHHH----HHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH--cCCccHHHHhhcCeeEEeCCCccc
Confidence 999998777766544 44331 11 2356788888877555543 333432 2 578899999999
Q ss_pred hhhhHHHHHHH
Q 000973 838 RSLFLGRLIEA 848 (1205)
Q Consensus 838 R~~i~~~~l~~ 848 (1205)
|..-+..++..
T Consensus 380 R~~Di~~L~~~ 390 (520)
T PRK10820 380 RPQDIMPLTEL 390 (520)
T ss_pred ChhHHHHHHHH
Confidence 98655554443
No 416
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.13 E-value=1.3e-06 Score=91.43 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=66.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhcccc---------------ccCCce
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEAR---------------RTTPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~---------------~~~p~I 767 (1205)
.+||+|++||||+++|++|.+... ..||+.++++.+-. +..-..+|.... .+..++
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~Gt 96 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-------ELLESELFGHEKGAFTGARSDKKGLLEQANGGT 96 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSE
T ss_pred CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-------chhhhhhhccccccccccccccCCceeeccceE
Confidence 599999999999999999998753 46899999875421 111223333221 124569
Q ss_pred eeeccchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccC
Q 000973 768 LYIPQFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFP 823 (1205)
Q Consensus 768 LfiDEid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~ 823 (1205)
||||||+.|....+.++ +.+|+.- .+ ..+|-||+||+.+...+-. ...|+
T Consensus 97 L~Ld~I~~L~~~~Q~~L----l~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~--~g~fr 155 (168)
T PF00158_consen 97 LFLDEIEDLPPELQAKL----LRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE--QGRFR 155 (168)
T ss_dssp EEEETGGGS-HHHHHHH----HHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH--TTSS-
T ss_pred EeecchhhhHHHHHHHH----HHHHhhchhccccccccccccceEEeecCcCHHHHHH--cCCCh
Confidence 99999999998777774 4445431 11 3488899999977555443 45555
No 417
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.7e-06 Score=103.53 Aligned_cols=134 Identities=17% Similarity=0.280 Sum_probs=79.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccC------cc------ccCCC---ccccC-CCCCCChhhHHHHhhccccc----cC
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKF------PV------HSLGL---PALLS-DPSAKTPEEALVHIFGEARR----TT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~------~~------~~l~~---~~l~~-~~~~g~se~~~~~lf~~A~~----~~ 764 (1205)
.+||+||+|+|||++|+++|..+... |+ ..++. ++++- +-.....-..++.+...+.. ..
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~ 119 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGK 119 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCC
Confidence 47999999999999999999987321 00 00110 11110 00000112234555444432 23
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
..|++|||+|.+... ..+.|+..|...+. ..+||++|++ + ..|++.+..+. .++.|.+|+.++...+++.
T Consensus 120 ~KVvIIDEad~Lt~~----a~naLLk~LEepp~-~~v~Il~tt~-~-~kl~~tI~SRc---~~i~f~~ls~~el~~~L~~ 189 (486)
T PRK14953 120 YKVYIIDEAHMLTKE----AFNALLKTLEEPPP-RTIFILCTTE-Y-DKIPPTILSRC---QRFIFSKPTKEQIKEYLKR 189 (486)
T ss_pred eeEEEEEChhhcCHH----HHHHHHHHHhcCCC-CeEEEEEECC-H-HHHHHHHHHhc---eEEEcCCCCHHHHHHHHHH
Confidence 569999999988643 34556777766543 4566666655 3 45554222222 4788999999999988888
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++..
T Consensus 190 i~k~ 193 (486)
T PRK14953 190 ICNE 193 (486)
T ss_pred HHHH
Confidence 8764
No 418
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.13 E-value=1.8e-06 Score=105.69 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=87.0
Q ss_pred eeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccC--------CCCCCChhh----HHHHhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS--------DPSAKTPEE----ALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~--------~~~~g~se~----~~~~lf~~A~~~~p~ILfi 770 (1205)
.+||+|++||||+++|++|.+.. .+.||+.+++..+-. +|..|.... .-..+|..| ..+.|||
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfL 313 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFL 313 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc---CCceEEe
Confidence 49999999999999999998764 346899999865421 111111000 011233333 3468999
Q ss_pred ccchhhHHhHHHHHHHHHHHH-HHhcCC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccchhh
Q 000973 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~l-L~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~eR~~ 840 (1205)
|||+.|....+.+++..|..- +..+.+ ..+|-||+||+.....+-. ...|+. + .++.|.+|...+|..
T Consensus 314 deI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~--~g~fr~dL~~rL~~~~I~lPPLReR~e 391 (526)
T TIGR02329 314 DEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ--QGRFRRDLFYRLSILRIALPPLRERPG 391 (526)
T ss_pred cChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh--hcchhHHHHHhcCCcEEeCCCchhchh
Confidence 999999887777754443210 011111 1245788888877444433 334442 2 567899999999987
Q ss_pred hHHHHHHHHH
Q 000973 841 FLGRLIEAAV 850 (1205)
Q Consensus 841 i~~~~l~~~~ 850 (1205)
=+..++..++
T Consensus 392 DI~~L~~~fl 401 (526)
T TIGR02329 392 DILPLAAEYL 401 (526)
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 419
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.12 E-value=5.7e-06 Score=95.77 Aligned_cols=128 Identities=19% Similarity=0.201 Sum_probs=75.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc----CccccCCCccccCCCCCCChhhHHHH-hhcccc-----ccCCceeeeccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVH-IFGEAR-----RTTPSILYIPQF 773 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~----~~~~~l~~~~l~~~~~~g~se~~~~~-lf~~A~-----~~~p~ILfiDEi 773 (1205)
+++||+|+||||||++|+++++.+.+ .+++.++.+... + ...+.. +...+. ...+.||+|||+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~-----~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~ 111 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER-----G--IDVIRNKIKEFARTAPVGGAPFKIIFLDEA 111 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-----c--hHHHHHHHHHHHhcCCCCCCCceEEEEeCc
Confidence 35899999999999999999998632 223333221111 1 011111 111111 123569999999
Q ss_pred hhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 774 NLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 774 d~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
|.+.... ...|..+++..... .++|+ ++|.+ ..+.+.+..+. .+++|++++.++...+++.++.+
T Consensus 112 ~~l~~~~----~~~L~~~le~~~~~-~~lIl-~~~~~-~~l~~~l~sr~---~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 112 DNLTSDA----QQALRRTMEMYSQN-TRFIL-SCNYS-SKIIDPIQSRC---AVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred ccCCHHH----HHHHHHHHhcCCCC-CeEEE-EeCCc-cccchhHHHHh---heeeeCCCCHHHHHHHHHHHHHH
Confidence 9986533 34466666665543 33333 45554 33333222222 46889999999988888887764
No 420
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.12 E-value=2.5e-06 Score=104.36 Aligned_cols=196 Identities=21% Similarity=0.243 Sum_probs=116.0
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
.+.+++|.......+.+.+.. . ......|+|+|++|||||++|+++....... ..+|+.++|..+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~-~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~i~i~c~~~~~ 202 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------L-SRSSISVLINGESGTGKELVAHALHRHSPRA--KAPFIALNMAAIPK 202 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------H-hccCCeEEEEeCCCCcHHHHHHHHHhcCCCC--CCCeEeeeCCCCCH
Confidence 456788888777776665432 1 1334579999999999999999999876432 46788888876533
Q ss_pred HHH-----HHHHH-------HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c--
Q 000973 457 KWV-----GEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (1205)
Q Consensus 457 ~~~-----g~~e~-------~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~-- 517 (1205)
..+ |.... .....|..+ ....||||||+.|. ..++..|+..++... .
T Consensus 203 ~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 203 DLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred HHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCC
Confidence 211 11000 000112222 23489999999984 345566777776321 0
Q ss_pred --CCcEEEEccccccc-------cccccccCCCCccccccCCCCCchhhhh----hhhccccc----cC---CCCchhHH
Q 000973 518 --RGQVVLIGATNRVD-------AIDGALRRPGRFDREFNFPLPGCEARAE----ILDIHTRK----WK---QPPSRELK 577 (1205)
Q Consensus 518 --~~~viVI~atn~~~-------~ld~aL~r~gRf~~~I~~~~P~~eer~~----Il~~~l~~----~~---~~~~~~~l 577 (1205)
..++.||++|+..- .+.+.|.. || ..+.+..|...+|.+ ++..++.. ++ ..++.+.+
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 12467777776521 12233333 44 234455555555543 44444432 22 23567777
Q ss_pred HHHhhhhhcccchhHHHHhHHHHHH
Q 000973 578 SELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 578 ~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
..|..+.---+-++|++++..++..
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHh
Confidence 7777666555778999998887753
No 421
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.5e-06 Score=105.24 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=77.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC-----------------CCcccc-CCCCCCChhhHHHHhhcccccc--
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL-----------------GLPALL-SDPSAKTPEEALVHIFGEARRT-- 763 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l-----------------~~~~l~-~~~~~g~se~~~~~lf~~A~~~-- 763 (1205)
+.+||+||+|+|||++|+++|+.+........ ..++++ .....+..-..+++++..+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~ 118 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV 118 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence 46999999999999999999998732111000 000110 0111123345677777666432
Q ss_pred --CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhh
Q 000973 764 --TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLF 841 (1205)
Q Consensus 764 --~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i 841 (1205)
...||||||+|.+.. ...+.|+..|++... ..+||+ +|+.+ ..|.+. ++..-.+++|..++.++....
T Consensus 119 ~~~~KViIIDEad~Lt~----~a~naLLK~LEePp~-~tvfIL-~t~~~-~~llpT---IrSRc~~~~f~~l~~~ei~~~ 188 (620)
T PRK14948 119 QARWKVYVIDECHMLST----AAFNALLKTLEEPPP-RVVFVL-ATTDP-QRVLPT---IISRCQRFDFRRIPLEAMVQH 188 (620)
T ss_pred cCCceEEEEECccccCH----HHHHHHHHHHhcCCc-CeEEEE-EeCCh-hhhhHH---HHhheeEEEecCCCHHHHHHH
Confidence 236999999998754 344567777776443 234444 44555 344332 222114677887877766666
Q ss_pred HHHHHH
Q 000973 842 LGRLIE 847 (1205)
Q Consensus 842 ~~~~l~ 847 (1205)
+..++.
T Consensus 189 L~~ia~ 194 (620)
T PRK14948 189 LSEIAE 194 (620)
T ss_pred HHHHHH
Confidence 655554
No 422
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.11 E-value=1.7e-06 Score=107.37 Aligned_cols=131 Identities=22% Similarity=0.244 Sum_probs=82.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhcc---------------ccccCCce
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGE---------------ARRTTPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~---------------A~~~~p~I 767 (1205)
.|||+|++||||+++|++|.+... +.+|+.+++..+-... .-..+|.. ......++
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~-------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~Gt 293 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL-------LESELFGHEKGAFTGAIAQRKGRFELADGGT 293 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH-------HHHHHcCCCCCccCCCCcCCCCcccccCCCe
Confidence 499999999999999999998752 4689999986652110 00112111 11234579
Q ss_pred eeeccchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCC
Q 000973 768 LYIPQFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKP 833 (1205)
Q Consensus 768 LfiDEid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P 833 (1205)
||||||+.|....+..++. +|+.- .+ ..++-||+||+.....+-. ...|+. + .++.|.+|
T Consensus 294 L~ldei~~L~~~~Q~~Ll~----~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~--~~~f~~~L~~rl~~~~i~lP 367 (534)
T TIGR01817 294 LFLDEIGEISPAFQAKLLR----VLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA--KGEFRADLYYRINVVPIFLP 367 (534)
T ss_pred EEEechhhCCHHHHHHHHH----HHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHH--cCCCCHHHHHHhcCCeeeCC
Confidence 9999999998777766444 44331 11 1257788888876433332 334432 1 46778899
Q ss_pred CccchhhhHHHHHHH
Q 000973 834 STEDRSLFLGRLIEA 848 (1205)
Q Consensus 834 ~~~eR~~i~~~~l~~ 848 (1205)
...+|..=+..++..
T Consensus 368 pLreR~eDi~~L~~~ 382 (534)
T TIGR01817 368 PLRERREDIPLLAEA 382 (534)
T ss_pred CcccccccHHHHHHH
Confidence 998886544444443
No 423
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.11 E-value=5.7e-06 Score=95.90 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=52.0
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHh----c-------CCCCCeEEeccCCcCCccccCCCccccCCCceeeecC
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEE----L-------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEK 832 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~----~-------~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~ 832 (1205)
..+|||||||+.+....+.. |+..|+. + .-..++++|+|.|-....|++.+..+|. .++.+..
T Consensus 144 ~~GiL~lDEInrL~~~~Q~~----LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~--l~i~l~~ 217 (350)
T CHL00081 144 NRGILYVDEVNLLDDHLVDI----LLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFG--MHAEIRT 217 (350)
T ss_pred CCCEEEecChHhCCHHHHHH----HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhC--ceeecCC
Confidence 35799999999988766655 4455543 1 1134788888888553357663333343 7778888
Q ss_pred CC-ccchhhhHHHHH
Q 000973 833 PS-TEDRSLFLGRLI 846 (1205)
Q Consensus 833 P~-~~eR~~i~~~~l 846 (1205)
|. .+.+.+|++...
T Consensus 218 ~~~~~~e~~il~~~~ 232 (350)
T CHL00081 218 VKDPELRVKIVEQRT 232 (350)
T ss_pred CCChHHHHHHHHhhh
Confidence 87 489999988643
No 424
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.11 E-value=1.7e-06 Score=109.86 Aligned_cols=140 Identities=20% Similarity=0.280 Sum_probs=85.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccC--------CCCCCChhhHHHHhhccccccCCceeeeccch
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~--------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
.|||+|++||||+++|++|.+... .-||+.+++..+-. ++..|.........|.. ...++||||||+
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~ 426 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVE 426 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChh
Confidence 499999999999999999988753 46899998765421 11111111111112333 345799999999
Q ss_pred hhHHhHHHHHHHHHHHH-HHhcCC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCccchhhhHHH
Q 000973 775 LWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~l-L~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~eR~~i~~~ 844 (1205)
.+....+..++..|..- +..+.+ ..++-||+||+.....+-. ...|+.. .++.|.+|...+|..=+..
T Consensus 427 ~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~--~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~ 504 (638)
T PRK11388 427 YLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVE--QNRFSRQLYYALHAFEITIPPLRMRREDIPA 504 (638)
T ss_pred hCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHh--cCCChHHHhhhhceeEEeCCChhhhhhHHHH
Confidence 99887776654444211 011111 1257788999876444333 3344322 5788999999999765555
Q ss_pred HHHHH
Q 000973 845 LIEAA 849 (1205)
Q Consensus 845 ~l~~~ 849 (1205)
++..+
T Consensus 505 L~~~~ 509 (638)
T PRK11388 505 LVNNK 509 (638)
T ss_pred HHHHH
Confidence 55444
No 425
>PRK08181 transposase; Validated
Probab=98.11 E-value=7.4e-07 Score=100.10 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=63.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
.+++|+|||||||||||.||++++ .+..++.+..++|+........+....+++.... .+.+|+|||++.+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-- 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-- 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC--
Confidence 469999999999999999999864 2455665665565542211111112333333332 3579999999886543
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000973 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
......|..+++..-.... +|.|||.++..+..
T Consensus 183 ~~~~~~Lf~lin~R~~~~s--~IiTSN~~~~~w~~ 215 (269)
T PRK08181 183 QAETSVLFELISARYERRS--ILITANQPFGEWNR 215 (269)
T ss_pred HHHHHHHHHHHHHHHhCCC--EEEEcCCCHHHHHH
Confidence 2223344455544322223 55688888665543
No 426
>PF13173 AAA_14: AAA domain
Probab=98.11 E-value=1.3e-05 Score=80.26 Aligned_cols=71 Identities=27% Similarity=0.348 Sum_probs=43.5
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCc
Q 000973 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L 489 (1205)
+.++|+||.|||||++++.+++.+. . .-.++.++..+.......... +...+.........+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~--~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-P--PENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-c--cccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998875 1 123444444443321111111 223333322225679999999877
No 427
>PF05729 NACHT: NACHT domain
Probab=98.08 E-value=1.8e-05 Score=81.84 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=75.7
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCC-----eEEEEEecchhhH------------HHHHHHHHHHHHH-HHHHHhhc
Q 000973 415 GVLLCGPPGTGKTLIARALACAASKAGQ-----KVSFYMRKGADVL------------SKWVGEAERQLKL-LFEEAQRN 476 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~-----~~~~~~i~~~~l~------------~~~~g~~e~~l~~-lf~~a~~~ 476 (1205)
-++|+|+||+|||++++.++..+..... .+.| .+...... ..........+.. +...+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPF-FFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEE-EEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 4789999999999999999988865542 1222 22222111 1111111111111 12223345
Q ss_pred CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC-cccCCcEEEEccccccccccccccCCCCccccccCCCCCch
Q 000973 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG-LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCE 555 (1205)
Q Consensus 477 ~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~-~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~e 555 (1205)
...+|+||.+|.+........ .......|..++.. .....+++|.+.+.....+...+.. . ..+.+...+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~ 153 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQE---RQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEE 153 (166)
T ss_pred CceEEEEechHhcccchhhhH---HHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHH
Confidence 567999999999975332211 12233333344443 1222333333322222223333322 1 45788888888
Q ss_pred hhhhhhhccccc
Q 000973 556 ARAEILDIHTRK 567 (1205)
Q Consensus 556 er~~Il~~~l~~ 567 (1205)
+..++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 888888877653
No 428
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.08 E-value=2.6e-06 Score=105.07 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=83.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC----CCCC----hhhHH---HHhhccccccCCceeeec
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKT----PEEAL---VHIFGEARRTTPSILYIP 771 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~----~~g~----se~~~---~~lf~~A~~~~p~ILfiD 771 (1205)
.|||+|++||||+++|++|.+... +.+|+.+++..+-... ..|. ...+. ...|.. ...+.||||
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ld 288 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLD 288 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEec
Confidence 499999999999999999998752 4588988876552110 0010 00000 112332 345789999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhcC-----C----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCccc
Q 000973 772 QFNLWWENAHEQLRAVLLTLLEELP-----S----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTED 837 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~~-----~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~e 837 (1205)
||+.|....+..++. +|+.-. + ..++-||+||+.....+-. ...|+.. .++.|.+|...+
T Consensus 289 eI~~L~~~~Q~~Ll~----~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~--~~~f~~dL~~rl~~~~i~lPpLre 362 (509)
T PRK05022 289 EIGELPLALQAKLLR----VLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVR--AGRFRADLYHRLSVFPLSVPPLRE 362 (509)
T ss_pred ChhhCCHHHHHHHHH----HHhcCCEeeCCCCcceecceEEEEecCCCHHHHHH--cCCccHHHHhcccccEeeCCCchh
Confidence 999998777766544 443311 1 2367888999876444332 3344422 577899999999
Q ss_pred hhhhHHHHHH
Q 000973 838 RSLFLGRLIE 847 (1205)
Q Consensus 838 R~~i~~~~l~ 847 (1205)
|..=+..++.
T Consensus 363 R~eDI~~L~~ 372 (509)
T PRK05022 363 RGDDVLLLAG 372 (509)
T ss_pred chhhHHHHHH
Confidence 9864444443
No 429
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.07 E-value=1.3e-06 Score=105.38 Aligned_cols=82 Identities=27% Similarity=0.402 Sum_probs=76.3
Q ss_pred cccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhhhH
Q 000973 915 RFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRDAV 994 (1205)
Q Consensus 915 ~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~~~ 994 (1205)
.+..|.+-.+....|+||.+|..||.|..|++|+..++|.+.+.|+.|+.||+.||+.||.. ++.|+++|..|+..|
T Consensus 75 ~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~---ds~~~~~s~~l~~~~ 151 (629)
T KOG1827|consen 75 LFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRP---DSLIYKDSGELEKYF 151 (629)
T ss_pred cchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCc---chhhhhhhhhhhcch
Confidence 45678888899999999999999999999999999999999999999999999999999999 678999999999999
Q ss_pred hhhhh
Q 000973 995 HGMLS 999 (1205)
Q Consensus 995 ~~~~~ 999 (1205)
.....
T Consensus 152 ~~~~~ 156 (629)
T KOG1827|consen 152 ISLED 156 (629)
T ss_pred hhhhc
Confidence 77654
No 430
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.06 E-value=2.5e-06 Score=109.07 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=85.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCC-----C-------CCCChhhHHHHhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD-----P-------SAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~-----~-------~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
.|||+|++|||||++|++|.+... +.+|+.+++..+-.. . +.|...... ..|..| ..++|||
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~L 476 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFL 476 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhc---CCCeEEE
Confidence 499999999999999999988642 568888887654211 0 011111111 233333 3579999
Q ss_pred ccchhhHHhHHHHHHHHHHHH-HHhcCC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccchhh
Q 000973 771 PQFNLWWENAHEQLRAVLLTL-LEELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~l-L~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~eR~~ 840 (1205)
|||+.+....+..++..|..- +..+.. ..++-||+||+.....+-. ...|+. + .++.|..|...+|..
T Consensus 477 dei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~--~~~f~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 477 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA--DREFRSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred echhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHH--cCcccHHHHhccCeeEEeCCChhhhHh
Confidence 999999877777654443221 001111 2467788999876444333 333332 1 577899999999987
Q ss_pred hHHHHHHHH
Q 000973 841 FLGRLIEAA 849 (1205)
Q Consensus 841 i~~~~l~~~ 849 (1205)
-+..++..+
T Consensus 555 Di~~L~~~~ 563 (686)
T PRK15429 555 DIPLLVKAF 563 (686)
T ss_pred HHHHHHHHH
Confidence 555454433
No 431
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.05 E-value=2.8e-06 Score=103.96 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=86.4
Q ss_pred eeeeecCCCCCCCccchhhhhh--------c--ccCccccCCCccccC--------CCCCCChhh----HHHHhhccccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHE--------L--EKFPVHSLGLPALLS--------DPSAKTPEE----ALVHIFGEARR 762 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~--------l--~~~~~~~l~~~~l~~--------~~~~g~se~----~~~~lf~~A~~ 762 (1205)
.+||+|++||||+++|++|.+. . .+.||+.++++.+-. +|..|.... .-..+|..|
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A-- 321 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA-- 321 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc--
Confidence 4999999999999999999876 2 246899999876421 111111000 011244443
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCC----C-cee
Q 000973 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVY 828 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii 828 (1205)
..+.||||||+.|....+.+++. +|++- .+ ..+|-||++||.....+-. .+.|+. + .++
T Consensus 322 -~gGTLfLdeI~~Lp~~~Q~kLl~----~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~--~g~Fr~dL~yrL~~~ 394 (538)
T PRK15424 322 -HGGTLFLDEIGEMPLPLQTRLLR----VLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVR--QGRFRRDLFYRLSIL 394 (538)
T ss_pred -CCCEEEEcChHhCCHHHHHHHHh----hhhcCeEEecCCCceeccceEEEEecCCCHHHHHh--cccchHHHHHHhcCC
Confidence 34689999999998877777544 44431 11 2355788999876444333 344442 2 578
Q ss_pred eecCCCccchhhhHHHHHHHH
Q 000973 829 QVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 829 ~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.|.+|...+|..=+..++..+
T Consensus 395 ~I~lPPLReR~eDI~~L~~~f 415 (538)
T PRK15424 395 RLQLPPLRERVADILPLAESF 415 (538)
T ss_pred eecCCChhhchhHHHHHHHHH
Confidence 899999999987555555443
No 432
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.05 E-value=9.9e-06 Score=88.28 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=105.7
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcc--
Q 000973 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE-- 728 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~-- 728 (1205)
..++.+..+-|++...+.+++...+.+ + |. | .-++||+|+.|||||.+++++.+++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl----------~------G~--p---annvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL----------Q------GL--P---ANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH----------c------CC--C---CcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345567777777777776665532211 0 10 1 23699999999999999999999863
Q ss_pred cCccccCCCccccCCCCCCChhhHHHHhhccccc-cCCceeeeccchhhHHhHHHHHHHHHHHHHHhc--CCCCCeEEec
Q 000973 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR-TTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL--PSHLPILLLG 805 (1205)
Q Consensus 729 ~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~-~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~--~~~~~v~vIa 805 (1205)
++.++.+....|. .+-.++...+. ...-|||+|++. +. ..+.-...|..+|++- ..-.+|+|.|
T Consensus 80 GLRlIev~k~~L~----------~l~~l~~~l~~~~~kFIlf~DDLs--Fe-~~d~~yk~LKs~LeGgle~~P~NvliyA 146 (249)
T PF05673_consen 80 GLRLIEVSKEDLG----------DLPELLDLLRDRPYKFILFCDDLS--FE-EGDTEYKALKSVLEGGLEARPDNVLIYA 146 (249)
T ss_pred CceEEEECHHHhc----------cHHHHHHHHhcCCCCEEEEecCCC--CC-CCcHHHHHHHHHhcCccccCCCcEEEEE
Confidence 4556655543332 24444444442 234699999864 22 2344456788888873 2356999999
Q ss_pred cCCcCCccccC---C--------------------CccccCCCceeeecCCCccchhhhHHHHHHH
Q 000973 806 SSSVPLAEVEG---D--------------------PSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 806 ttn~~~~~Ld~---~--------------------~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
|+|+- ..+++ + ++.+|. ..+.|..|+.++=.+|++.++..
T Consensus 147 TSNRR-HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG--L~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 147 TSNRR-HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG--LWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred ecchh-hccchhhhhccCCCccccCcchHHHHHHhHHHhCC--cEEEecCCCHHHHHHHHHHHHHH
Confidence 99986 44444 1 223333 78889999999999999999865
No 433
>PRK15115 response regulator GlrR; Provisional
Probab=98.03 E-value=5.4e-06 Score=100.72 Aligned_cols=170 Identities=22% Similarity=0.319 Sum_probs=101.8
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH-----HH-------HHHHHHHHHhhcCCce
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-----ER-------QLKLLFEEAQRNQPSI 480 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~-----e~-------~l~~lf~~a~~~~p~V 480 (1205)
...++|+|++|||||++|+++....... ..+|+.++|..+....+... .. ....+|..+ ...+
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~--~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gt 231 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRA--SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGT 231 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCC--CCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCE
Confidence 3469999999999999999999876543 35788888876533222110 00 000112222 2359
Q ss_pred EEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc---------CCcEEEEccccccccccccccCCCCcc-------
Q 000973 481 IFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQVVLIGATNRVDAIDGALRRPGRFD------- 544 (1205)
Q Consensus 481 L~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---------~~~viVI~atn~~~~ld~aL~r~gRf~------- 544 (1205)
|||||||.|. ..++..|+..|+.... ..++.||++|+. .+...+.. |+|.
T Consensus 232 l~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 232 LFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHc-CCccHHHHHhh
Confidence 9999999984 3456667777753211 125788888875 23333222 3441
Q ss_pred ccccCCCCCchhhhh----hhhcccccc----C---CCCchhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 545 REFNFPLPGCEARAE----ILDIHTRKW----K---QPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 545 ~~I~~~~P~~eer~~----Il~~~l~~~----~---~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
..+.+..|...+|.+ +++.++..+ + ..++.+.+..|..+.=--+.++|++++..|+.
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 234455566656543 334443321 1 23678888888877644577888888887764
No 434
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.03 E-value=3.7e-05 Score=95.09 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=31.0
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEe
Q 000973 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMR 449 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i 449 (1205)
|++...-+||+|+||+|||+++..++...... +..+-|+.+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 56777889999999999999999887665444 555555543
No 435
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=2e-05 Score=89.01 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcC-----------CeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----h
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAG-----------QKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----R 475 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-----------~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~ 475 (1205)
.-+..+||+||.|+||+++|.++|+.+.... ..-.++.+.... .+..+ .-..++.+...+. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 3456789999999999999999999875421 111122221110 00000 1223444444333 2
Q ss_pred cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCC
Q 000973 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (1205)
Q Consensus 476 ~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P 552 (1205)
+..-|++|+++|.| .....+.||..|+. ...++++|..|+.++.|.+.+++ |+ ..+.|+++
T Consensus 94 ~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRM-----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhc-----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 33459999999988 35567789999995 45678888888888999999998 87 55667654
No 436
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.01 E-value=9.6e-06 Score=98.91 Aligned_cols=195 Identities=24% Similarity=0.270 Sum_probs=110.7
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000973 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
.+..++|.......+.+.+.. + ......+|++|++||||+++|+++....... ..+|+.++|..+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~~~i~c~~~~~ 207 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------I-ALSQASVLISGESGTGKELIARAIHYNSRRA--KGPFIKVNCAALPE 207 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------H-cCCCcEEEEEcCCCccHHHHHHHHHHhCCCC--CCCeEEEECCCCCH
Confidence 344567766666555444322 0 1234579999999999999999998865433 35688888876533
Q ss_pred HH-----HHHHHHH-------HHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c--
Q 000973 457 KW-----VGEAERQ-------LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S-- 517 (1205)
Q Consensus 457 ~~-----~g~~e~~-------l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~-- 517 (1205)
.. +|..... ....|..+ ...+||||||+.|. ..++..|+..++... .
T Consensus 208 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 208 SLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCc
Confidence 22 1110000 00122222 23599999999984 345666777775321 0
Q ss_pred --CCcEEEEccccccccccccccCCCCccc-------cccCCCCCchhhhh----hhhcccccc----C---CCCchhHH
Q 000973 518 --RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEARAE----ILDIHTRKW----K---QPPSRELK 577 (1205)
Q Consensus 518 --~~~viVI~atn~~~~ld~aL~r~gRf~~-------~I~~~~P~~eer~~----Il~~~l~~~----~---~~~~~~~l 577 (1205)
..++.||++|+..- . .+...|+|.. .+.+..|...+|.+ ++..++... + ..++.+.+
T Consensus 274 ~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 350 (457)
T PRK11361 274 TIKVDIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350 (457)
T ss_pred eeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 12478888887531 1 1112223322 35566666666543 333333221 1 24667777
Q ss_pred HHHhhhhhcccchhHHHHhHHHHH
Q 000973 578 SELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 578 ~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
..|..+.---+.++|++++..|+.
T Consensus 351 ~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 351 SLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHH
Confidence 777665544467888888887764
No 437
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=2.2e-05 Score=78.30 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=51.4
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcC---CeEEEEEecchhhH------HHHHH----------HHHHHHHHHHHHH
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKAG---QKVSFYMRKGADVL------SKWVG----------EAERQLKLLFEEA 473 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~---~~~~~~~i~~~~l~------~~~~g----------~~e~~l~~lf~~a 473 (1205)
.+.++|+||+|+|||++++.++..+.... ....++.+++.... ..... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46789999999999999999999875320 02444444443221 11110 1233333444444
Q ss_pred hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhh
Q 000973 474 QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (1205)
Q Consensus 474 ~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld 513 (1205)
......+|+|||+|.|. ...++..|..+++
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh
Confidence 44444599999999874 1445556666555
No 438
>PRK06526 transposase; Provisional
Probab=98.00 E-value=1.6e-06 Score=96.88 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=58.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccCCC----CCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDP----SAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~~~----~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.+++|+||||||||+||.+|++++ .+..++.+..+.++... ..|... ..+... ..+.+|+|||++.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~----~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQ----AELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHH----HHHHHh--ccCCEEEEcccccCC
Confidence 579999999999999999999874 23444444444443211 112222 222222 235799999999865
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccc
Q 000973 778 ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L 814 (1205)
.. ......|..+++..-.... +|.|||.++..+
T Consensus 173 ~~--~~~~~~L~~li~~r~~~~s--~IitSn~~~~~w 205 (254)
T PRK06526 173 FE--PEAANLFFQLVSSRYERAS--LIVTSNKPFGRW 205 (254)
T ss_pred CC--HHHHHHHHHHHHHHHhcCC--EEEEcCCCHHHH
Confidence 22 1222334455544322222 566899885544
No 439
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=8.6e-06 Score=101.14 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=80.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC-C--------------------ccccC-CCCCCChhhHHHHhhccccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG-L--------------------PALLS-DPSAKTPEEALVHIFGEARR 762 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~-~--------------------~~l~~-~~~~g~se~~~~~lf~~A~~ 762 (1205)
.+||+||+|+|||++|+++|+.+. +...... . ++++- +......-..+++++..+..
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~ 126 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRY 126 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHh
Confidence 599999999999999999999862 2110000 0 01110 00000112356666665543
Q ss_pred c----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccch
Q 000973 763 T----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDR 838 (1205)
Q Consensus 763 ~----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR 838 (1205)
. ...||+|||+|.+.. ...+.|+..|.+.+.. .+||++| +.+ +.+.+.+.++. .+|+|..++.++.
T Consensus 127 ~P~~a~~KVvIIDEad~Ls~----~a~naLLKtLEePp~~-~~fIl~t-te~-~kll~tI~SRc---q~~~f~~l~~~el 196 (598)
T PRK09111 127 RPVSARYKVYIIDEVHMLST----AAFNALLKTLEEPPPH-VKFIFAT-TEI-RKVPVTVLSRC---QRFDLRRIEADVL 196 (598)
T ss_pred chhcCCcEEEEEEChHhCCH----HHHHHHHHHHHhCCCC-eEEEEEe-CCh-hhhhHHHHhhe---eEEEecCCCHHHH
Confidence 2 246999999999864 3356677777776553 4444444 444 34444222222 5788999999988
Q ss_pred hhhHHHHHHH
Q 000973 839 SLFLGRLIEA 848 (1205)
Q Consensus 839 ~~i~~~~l~~ 848 (1205)
..+++..+.+
T Consensus 197 ~~~L~~i~~k 206 (598)
T PRK09111 197 AAHLSRIAAK 206 (598)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 440
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=5.3e-06 Score=96.10 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=79.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCc-c--------------ccCCCcccc--CCCCCC--ChhhHHHHhhccccc--
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEKFP-V--------------HSLGLPALL--SDPSAK--TPEEALVHIFGEARR-- 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~-~--------------~~l~~~~l~--~~~~~g--~se~~~~~lf~~A~~-- 762 (1205)
..+||+||+|+||+++|.++|..+.-.. - ..-+-|+++ .....+ -.-..++++...+..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 4599999999999999999999762100 0 000011211 100001 123456666554433
Q ss_pred --cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhh
Q 000973 763 --TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 763 --~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
...-|++||++|.+-. ...+.|+..|.+-+. ++++|.+|+.+ ..|.+-+.++. .++.|.+|+.++-..
T Consensus 103 ~~~~~kv~iI~~a~~m~~----~aaNaLLK~LEEPp~--~~~fiL~t~~~-~~ll~TI~SRc---~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNR----NAANALLKSLEEPSG--DTVLLLISHQP-SRLLPTIKSRC---QQQACPLPSNEESLQ 172 (328)
T ss_pred ccCCCeEEEECChhhCCH----HHHHHHHHHHhCCCC--CeEEEEEECCh-hhCcHHHHhhc---eeeeCCCcCHHHHHH
Confidence 3456999999998765 445668888887553 55555667766 55665343333 467789898887766
Q ss_pred hHHH
Q 000973 841 FLGR 844 (1205)
Q Consensus 841 i~~~ 844 (1205)
.+..
T Consensus 173 ~L~~ 176 (328)
T PRK05707 173 WLQQ 176 (328)
T ss_pred HHHH
Confidence 6654
No 441
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.97 E-value=1.2e-05 Score=98.27 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=111.3
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHH
Q 000973 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~ 458 (1205)
..++|.......+.+.+.. + ......+++.|.+||||+++|+++....... ..+|+.++|..+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~-~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~--~~~~~~~~c~~~~~~~ 200 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGR-L----------SRSDITVLINGESGTGKELVARALHRHSPRA--NGPFIALNMAAIPKDL 200 (463)
T ss_pred cceeecCHHHHHHHHHHHH-H----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCC--CCCeEEEeCCCCCHHH
Confidence 4577877777666555432 0 1234579999999999999999998876433 4678888887653322
Q ss_pred H-----HHHHH----H---HHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc---------c
Q 000973 459 V-----GEAER----Q---LKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------S 517 (1205)
Q Consensus 459 ~-----g~~e~----~---l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---------~ 517 (1205)
+ |.... . ....|. ......||||||+.|. ..++..|+..++... .
T Consensus 201 ~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 201 IESELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred HHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCcee
Confidence 2 11000 0 000111 2234689999999884 345566777665321 0
Q ss_pred CCcEEEEccccccc-------cccccccCCCCcc-ccccCCCCC--chhhhhhhhcccccc----C---CCCchhHHHHH
Q 000973 518 RGQVVLIGATNRVD-------AIDGALRRPGRFD-REFNFPLPG--CEARAEILDIHTRKW----K---QPPSRELKSEL 580 (1205)
Q Consensus 518 ~~~viVI~atn~~~-------~ld~aL~r~gRf~-~~I~~~~P~--~eer~~Il~~~l~~~----~---~~~~~~~l~~L 580 (1205)
..++.||++|+..- .+.+.|.. |+. ..|++|+.. .++...++..++... + ..++.+.+..|
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 267 KVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 12466777776521 12222222 332 244444443 234444444443322 2 34677777777
Q ss_pred hhhhhcccchhHHHHhHHHHHHH
Q 000973 581 AASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 581 A~~t~G~sgadI~~L~~eA~~~a 603 (1205)
..+.---+-++|++++..|+..+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 66643335688999888877543
No 442
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.97 E-value=3.6e-05 Score=87.66 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=82.7
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhh--hhhcCCeEEEEEecch----hhHHHH---HH----------HHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACA--ASKAGQKVSFYMRKGA----DVLSKW---VG----------EAERQLKLLFE 471 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~--l~~~~~~~~~~~i~~~----~l~~~~---~g----------~~e~~l~~lf~ 471 (1205)
...+-|.|+|++|+|||+||..+++. .......+.++.+... .+.... ++ .... +...+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~ 95 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQLR 95 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccch
Confidence 34567899999999999999999988 3333333444444332 121111 11 1222 333333
Q ss_pred HHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCC
Q 000973 472 EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (1205)
Q Consensus 472 ~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~ 551 (1205)
......+++|+||+++... .+..+...+.... .+..||.||... .+-..+.. ....+.++.
T Consensus 96 ~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~--~~~kilvTTR~~-~v~~~~~~---~~~~~~l~~ 156 (287)
T PF00931_consen 96 ELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFS--SGSKILVTTRDR-SVAGSLGG---TDKVIELEP 156 (287)
T ss_dssp HHHCCTSEEEEEEEE-SHH-------------HH-------HCHH--SS-EEEEEESCG-GGGTTHHS---CEEEEECSS
T ss_pred hhhccccceeeeeeecccc-------------ccccccccccccc--cccccccccccc-cccccccc---ccccccccc
Confidence 4444558999999996441 2222333332211 234445455442 22222211 135788999
Q ss_pred CCchhhhhhhhccccccC---CCCchhHHHHHhhhhhcc
Q 000973 552 PGCEARAEILDIHTRKWK---QPPSRELKSELAASCVGY 587 (1205)
Q Consensus 552 P~~eer~~Il~~~l~~~~---~~~~~~~l~~LA~~t~G~ 587 (1205)
.+.++..++|...+.... .....+....|+..+.|+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999988776543 122234557788888774
No 443
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.96 E-value=2.3e-06 Score=95.66 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=65.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCC----CCCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD----PSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~----~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.+++|+|+|||||||||-||++++- +..++.+..++++.. +..|..+..+...+. ...||+|||+....
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~-----~~dlLIiDDlG~~~ 180 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK-----KVDLLIIDDIGYEP 180 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh-----cCCEEEEecccCcc
Confidence 4799999999999999999999862 456666666666542 112333333333222 34699999998865
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000973 778 ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
.. ......|.+++...-..... |.|||.++..+..
T Consensus 181 ~~--~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~ 215 (254)
T COG1484 181 FS--QEEADLLFQLISRRYESRSL--IITSNLSFGEWDE 215 (254)
T ss_pred CC--HHHHHHHHHHHHHHHhhccc--eeecCCChHHHHh
Confidence 32 12223344444443222222 7799998776665
No 444
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=1.1e-05 Score=98.25 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=78.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc------cccC---------CCccccCCCCCCCh---hhHHHHhhcccccc---
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFP------VHSL---------GLPALLSDPSAKTP---EEALVHIFGEARRT--- 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~------~~~l---------~~~~l~~~~~~g~s---e~~~~~lf~~A~~~--- 763 (1205)
.+||+||+|+|||++|+++++.+..-. .... .-+.++.. .+.+ -..++.+...+...
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el--daas~~gId~IRelie~~~~~P~~ 115 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM--DAASNRGIDDIRELIEQTKYKPSM 115 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe--ccccccCHHHHHHHHHHHhhCccc
Confidence 469999999999999999999862110 0000 00011100 1111 23455555433211
Q ss_pred -CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000973 764 -TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 764 -~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
..-|++|||+|.+... ..+.|+..|.+.+.. .+||++| +.+ ..|.+.+.++ -.+++|.+++.++....+
T Consensus 116 ~~~KVvIIDEad~Lt~~----A~NALLK~LEEpp~~-t~FIL~t-td~-~kL~~tI~SR---c~~~~F~~Ls~~ei~~~L 185 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE----AFNALLKTLEEPPSY-VKFILAT-TDP-LKLPATILSR---TQHFRFKQIPQNSIISHL 185 (535)
T ss_pred CCeEEEEEECcccCCHH----HHHHHHHHHhhcCCc-eEEEEEE-CCh-hhCchHHHhh---ceeEEcCCCCHHHHHHHH
Confidence 2359999999998653 445677777777543 3444444 445 5665533332 257889999988888877
Q ss_pred HHHHHH
Q 000973 843 GRLIEA 848 (1205)
Q Consensus 843 ~~~l~~ 848 (1205)
+.++..
T Consensus 186 ~~Il~~ 191 (535)
T PRK08451 186 KTILEK 191 (535)
T ss_pred HHHHHH
Confidence 777654
No 445
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=1e-05 Score=101.22 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=74.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcc-ccCC---------------CccccC-CCCCCChhhHHHHhhccccc----c
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPV-HSLG---------------LPALLS-DPSAKTPEEALVHIFGEARR----T 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~-~~l~---------------~~~l~~-~~~~g~se~~~~~lf~~A~~----~ 763 (1205)
.+||+||+|+|||++|+++++.+..... -... .++++. +......-..++++...+.. .
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~ 119 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALA 119 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccC
Confidence 4799999999999999999998621110 0000 001100 00001112334444433322 2
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
...||||||+|.|.. ...+.|+..|++... ..+||+++++ . ..+.+.+.++. .+++|..++..+...+++
T Consensus 120 ~~kVvIIDEa~~L~~----~a~naLLk~LEepp~-~tv~Il~t~~-~-~kll~tI~SR~---~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 120 RYKVYIIDEVHMLST----AAFNALLKTLEEPPP-HAIFILATTE-V-HKVPATILSRC---QRFDFHRHSVADMAAHLR 189 (585)
T ss_pred CeEEEEEeChHhCCH----HHHHHHHHHHhcCCC-CeEEEEEeCC-h-hhhhHHHHhcc---ceeeCCCCCHHHHHHHHH
Confidence 346999999998764 334556777776554 3445555444 3 34433222222 467788888887777777
Q ss_pred HHHHH
Q 000973 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
.++..
T Consensus 190 ~~a~~ 194 (585)
T PRK14950 190 KIAAA 194 (585)
T ss_pred HHHHH
Confidence 66543
No 446
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.95 E-value=6.4e-06 Score=104.16 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=88.9
Q ss_pred ccCChhHHHHHhhhhhcccccccccc--------cccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC--eEEEEEe
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFF--------ASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMR 449 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~--------~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i 449 (1205)
.|.|.+.+|..|.-.+.--......+ ....++..-+|||+|.||||||.+|+++++...+..+ ...+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 47888888877744332110000000 0022344558999999999999999999986532210 0122222
Q ss_pred cchhhHHHHHHH--HHHHH-HHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc----------
Q 000973 450 KGADVLSKWVGE--AERQL-KLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------- 516 (1205)
Q Consensus 450 ~~~~l~~~~~g~--~e~~l-~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---------- 516 (1205)
.+..... +.+. .+..+ ...+.. ....+++|||++.|. ......|+..|+.-.
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcce
Confidence 2221110 0000 00000 001111 223499999999883 345566777775321
Q ss_pred -cCCcEEEEccccccc-------------cccccccCCCCcccccc-CCCCCchhhhhhh
Q 000973 517 -SRGQVVLIGATNRVD-------------AIDGALRRPGRFDREFN-FPLPGCEARAEIL 561 (1205)
Q Consensus 517 -~~~~viVI~atn~~~-------------~ld~aL~r~gRf~~~I~-~~~P~~eer~~Il 561 (1205)
-...+.||||+|+.+ .|++.|++ ||+.++. ++.|+.+.=..|.
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHH
Confidence 124689999999853 26788888 8976643 4555554444443
No 447
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=7.8e-06 Score=97.68 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=73.4
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc--------CC---------------CccccCCCCCCC---hhhHHHHhhc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS--------LG---------------LPALLSDPSAKT---PEEALVHIFG 758 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~--------l~---------------~~~l~~~~~~g~---se~~~~~lf~ 758 (1205)
.+||+||||||||++|+++|+.+....... .. -+++. . +.|. .-..++++..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~-~~~~~~~~id~Ir~l~~ 117 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-E-FDAASNNSVDDIRLLRE 117 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-e-ecccccCCHHHHHHHHH
Confidence 499999999999999999999873211000 00 00110 0 0111 1234555444
Q ss_pred cccc----cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCC
Q 000973 759 EARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPS 834 (1205)
Q Consensus 759 ~A~~----~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~ 834 (1205)
.+.. ....||||||+|.+... ..+.|+..|.+... ..+||++|++ + ..|.+.+..+. .+++|.+++
T Consensus 118 ~~~~~p~~~~~kvvIIdea~~l~~~----~~~~LLk~LEep~~-~t~~Il~t~~-~-~kl~~tl~sR~---~~v~f~~l~ 187 (397)
T PRK14955 118 NVRYGPQKGRYRVYIIDEVHMLSIA----AFNAFLKTLEEPPP-HAIFIFATTE-L-HKIPATIASRC---QRFNFKRIP 187 (397)
T ss_pred HHhhchhcCCeEEEEEeChhhCCHH----HHHHHHHHHhcCCC-CeEEEEEeCC-h-HHhHHHHHHHH---HHhhcCCCC
Confidence 4321 12359999999998653 23446666665544 3444444443 3 34433111111 577888888
Q ss_pred ccchhhhHHHHHH
Q 000973 835 TEDRSLFLGRLIE 847 (1205)
Q Consensus 835 ~~eR~~i~~~~l~ 847 (1205)
.++...+++..+.
T Consensus 188 ~~ei~~~l~~~~~ 200 (397)
T PRK14955 188 LEEIQQQLQGICE 200 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777776664
No 448
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.93 E-value=1.3e-05 Score=92.97 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=63.8
Q ss_pred eeeecCCCCCCCccchhhhhhccc-----------------------CccccCCCccccCCCCCCChhhHHHHhhccccc
Q 000973 706 LLLCGSEGTGVDHLGPAILHELEK-----------------------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARR 762 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~-----------------------~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~ 762 (1205)
+||+||||+|||++|.++|+.+.+ -.++.++.+..... .-....++++-.....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~---~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI---DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC---cchHHHHHHHHHHhcc
Confidence 999999999999999999998732 24555554433221 1123445554443322
Q ss_pred ----cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000973 763 ----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 763 ----~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
...-|++|||+|.+...+ .++|+..|..-+. +..+|.+||.+...+++
T Consensus 104 ~~~~~~~kviiidead~mt~~A----~nallk~lEep~~--~~~~il~~n~~~~il~t 155 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTEDA----ANALLKTLEEPPK--NTRFILITNDPSKILPT 155 (325)
T ss_pred CCCCCCceEEEeCcHHHHhHHH----HHHHHHHhccCCC--CeEEEEEcCChhhccch
Confidence 335799999999987633 3445555555544 55556667777444553
No 449
>PRK12377 putative replication protein; Provisional
Probab=97.93 E-value=2.1e-06 Score=95.27 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=60.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC----CCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~----~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.+++|+|+|||||||||.||++.+. +..++.+..++++... ..+.++ ..++... ....+|+|||+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~---~~~l~~l--~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSG---EKFLQEL--CKVDLLVLDEIGIQR 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchH---HHHHHHh--cCCCEEEEcCCCCCC
Confidence 3699999999999999999999862 3455555555554321 011111 1233332 235799999996643
Q ss_pred HhHHHHHHHHHHHHHHhc-CCCCCeEEeccCCcCCccccC
Q 000973 778 ENAHEQLRAVLLTLLEEL-PSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~-~~~~~v~vIattn~~~~~Ld~ 816 (1205)
.. ......|..+++.- ....++ |.|||..+..|..
T Consensus 177 ~s--~~~~~~l~~ii~~R~~~~~pt--iitSNl~~~~l~~ 212 (248)
T PRK12377 177 ET--KNEQVVLNQIIDRRTASMRSV--GMLTNLNHEAMST 212 (248)
T ss_pred CC--HHHHHHHHHHHHHHHhcCCCE--EEEcCCCHHHHHH
Confidence 21 12233455555543 223343 4479977555543
No 450
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=1.4e-05 Score=99.56 Aligned_cols=131 Identities=11% Similarity=0.168 Sum_probs=76.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc--------CC---------------CccccCCCCCCC---hhhHHHHhhc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS--------LG---------------LPALLSDPSAKT---PEEALVHIFG 758 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~--------l~---------------~~~l~~~~~~g~---se~~~~~lf~ 758 (1205)
.+||+||+|||||++|+++|+.+....... .. -.++. . +.|. .-..++.+..
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~-~-~d~~s~~~vd~Ir~l~e 117 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNIS-E-FDAASNNSVDDIRQLRE 117 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeE-E-ecccccCCHHHHHHHHH
Confidence 599999999999999999999872211000 00 00000 0 0111 1234555544
Q ss_pred cccc----cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCC
Q 000973 759 EARR----TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPS 834 (1205)
Q Consensus 759 ~A~~----~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~ 834 (1205)
.+.. ...-|++|||+|.+.... .+.|+..|.+.+.. .+||++|++ + ..|.+ .+...-.+++|..++
T Consensus 118 ~~~~~P~~~~~KVvIIdEad~Lt~~a----~naLLK~LEePp~~-tv~IL~t~~-~-~kLl~---TI~SRc~~vef~~l~ 187 (620)
T PRK14954 118 NVRYGPQKGRYRVYIIDEVHMLSTAA----FNAFLKTLEEPPPH-AIFIFATTE-L-HKIPA---TIASRCQRFNFKRIP 187 (620)
T ss_pred HHHhhhhcCCCEEEEEeChhhcCHHH----HHHHHHHHhCCCCC-eEEEEEeCC-h-hhhhH---HHHhhceEEecCCCC
Confidence 4421 223599999999986432 45577777776653 455555544 3 34433 122212678899998
Q ss_pred ccchhhhHHHHHH
Q 000973 835 TEDRSLFLGRLIE 847 (1205)
Q Consensus 835 ~~eR~~i~~~~l~ 847 (1205)
.++....++.++.
T Consensus 188 ~~ei~~~L~~i~~ 200 (620)
T PRK14954 188 LDEIQSQLQMICR 200 (620)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777776664
No 451
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.89 E-value=4.2e-05 Score=83.14 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=55.1
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc--hhhHHHHH-------------------HHHHHHHH
Q 000973 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG--ADVLSKWV-------------------GEAERQLK 467 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~--~~l~~~~~-------------------g~~e~~l~ 467 (1205)
|++...-++|+||||||||+++..++......+..+.|+.... ...+.... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 6677788999999999999999999988766666676666543 11111110 01112244
Q ss_pred HHHHHHhhcCCceEEEeccCCccc
Q 000973 468 LLFEEAQRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 468 ~lf~~a~~~~p~VL~IDEid~L~~ 491 (1205)
.+...+....+++|+||-|..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 444445555788999999998763
No 452
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.88 E-value=5.2e-06 Score=84.20 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=58.7
Q ss_pred eeeeecCCCCCCCccchhhhhhccc--CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~ 782 (1205)
.|||+|++||||+++|++|.+.... .+|+.+++..+- .+++..+ .++.|||++||.|....+.
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------~~~l~~a---~~gtL~l~~i~~L~~~~Q~ 87 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------AELLEQA---KGGTLYLKNIDRLSPEAQR 87 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------HHHHHHC---TTSEEEEECGCCS-HHHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------HHHHHHc---CCCEEEECChHHCCHHHHH
Confidence 4999999999999999999987532 244444433211 3455555 5679999999999876666
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeccCCcCCccc
Q 000973 783 QLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 783 ~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L 814 (1205)
. |..+|...+ ..++-||+|+..+...+
T Consensus 88 ~----L~~~l~~~~-~~~~RlI~ss~~~l~~l 114 (138)
T PF14532_consen 88 R----LLDLLKRQE-RSNVRLIASSSQDLEEL 114 (138)
T ss_dssp H----HHHHHHHCT-TTTSEEEEEECC-CCCH
T ss_pred H----HHHHHHhcC-CCCeEEEEEeCCCHHHH
Confidence 6 445555554 44556777777664443
No 453
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.88 E-value=8.1e-05 Score=82.31 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=66.3
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch--hhH-H
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVL-S 456 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~l~-~ 456 (1205)
.|.|+.-+++.|...+...+.++. -+.|--+=|||++||||.++++.||+.+.+.|...+|+..--+ ++- .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 378988888888777765444332 1234456689999999999999999999877755554321111 110 1
Q ss_pred HHHHHHHHHH-HHHHHHHhhcCCceEEEeccCCcc
Q 000973 457 KWVGEAERQL-KLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 457 ~~~g~~e~~l-~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
+++..-...+ ..+...+..++.+|+++||+|.|-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 2222222222 233444556677799999999884
No 454
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.87 E-value=0.00012 Score=86.63 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=40.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc
Q 000973 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA 440 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (1205)
..+.++|.=...-+.++++++.. ..++...+ ..+-+||+||+||||||+++.||++++..
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~---~~~~~~~l---~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQ---VAEFTPKL---GSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHH---HHHhccCC---CceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 45666776666666667666541 01111111 23468899999999999999999999743
No 455
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.87 E-value=2.5e-05 Score=91.47 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=63.1
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhhhh-cCCeEEEEEecch--hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEecc
Q 000973 410 ITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKGA--DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEI 486 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~~~--~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEi 486 (1205)
..+++|++|||++|+|||+|.-+....+.. ...+++|...-.. .-+..+.| ...-+..+.+..... ..||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG-QDDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhC-CCccHHHHHHHHHhc-CCEEEEeee
Confidence 457899999999999999999999888754 2234444322111 01111111 111223333333333 239999999
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000973 487 DGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 487 d~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
+.- +-....++..|+..|- ..+++||+|+|.
T Consensus 137 ~V~--------DiaDAmil~rLf~~l~----~~gvvlVaTSN~ 167 (362)
T PF03969_consen 137 QVT--------DIADAMILKRLFEALF----KRGVVLVATSNR 167 (362)
T ss_pred ecc--------chhHHHHHHHHHHHHH----HCCCEEEecCCC
Confidence 743 1224556666776654 356888899987
No 456
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.87 E-value=1.9e-05 Score=91.53 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=49.9
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhc-----------CCCCCeEEeccCCcCCccccCCCccccCCCceeeecC
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEEL-----------PSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEK 832 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~-----------~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~ 832 (1205)
..++||||||+.+....+.. |+..|+.- .-..++++|+|.|-....|++.+..+|. .++.+..
T Consensus 131 ~~GvL~lDEi~~L~~~~Q~~----Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~--l~i~l~~ 204 (337)
T TIGR02030 131 NRGILYIDEVNLLEDHLVDV----LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFG--LHAEIRT 204 (337)
T ss_pred cCCEEEecChHhCCHHHHHH----HHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcc--eEEECCC
Confidence 35799999999987655554 55555431 1134788999888543356663333443 6677787
Q ss_pred CCc-cchhhhHHHHH
Q 000973 833 PST-EDRSLFLGRLI 846 (1205)
Q Consensus 833 P~~-~eR~~i~~~~l 846 (1205)
|.. ++|.+|++...
T Consensus 205 p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 205 VRDVELRVEIVERRT 219 (337)
T ss_pred CCCHHHHHHHHHhhh
Confidence 765 78888887643
No 457
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=2.1e-05 Score=98.44 Aligned_cols=127 Identities=16% Similarity=0.303 Sum_probs=79.5
Q ss_pred eeeeecCCCCCCCccchhhhhhccc------------------------CccccCCCccccCCCCCCChhhHHHHhhccc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEK------------------------FPVHSLGLPALLSDPSAKTPEEALVHIFGEA 760 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~------------------------~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A 760 (1205)
.+||+||+|+|||++|.++|+.+.. ++++.++.. .......++.+...+
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~-------~~~~vd~Ir~li~~~ 113 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA-------SNNSVDDIRNLIEQV 113 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc-------ccCCHHHHHHHHHHH
Confidence 4899999999999999999997621 111112110 011123466666555
Q ss_pred ccc----CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCcc
Q 000973 761 RRT----TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (1205)
Q Consensus 761 ~~~----~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~ 836 (1205)
... ..-|++|||+|.+.. ...+.|+..|...+. ..+||++|++.. .|-+. +...-.+++|..++.+
T Consensus 114 ~~~P~~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp~-~tifIL~tt~~~--kIl~t---I~SRc~iv~f~~ls~~ 183 (614)
T PRK14971 114 RIPPQIGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPPS-YAIFILATTEKH--KILPT---ILSRCQIFDFNRIQVA 183 (614)
T ss_pred hhCcccCCcEEEEEECcccCCH----HHHHHHHHHHhCCCC-CeEEEEEeCCch--hchHH---HHhhhheeecCCCCHH
Confidence 332 234999999999854 345567778877654 345555555543 33332 2321267889999998
Q ss_pred chhhhHHHHHHH
Q 000973 837 DRSLFLGRLIEA 848 (1205)
Q Consensus 837 eR~~i~~~~l~~ 848 (1205)
+...+++.++..
T Consensus 184 ei~~~L~~ia~~ 195 (614)
T PRK14971 184 DIVNHLQYVASK 195 (614)
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 458
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=2.8e-06 Score=95.44 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=60.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
..++|+|||||||||||.+|++.+ .+..+..++.++++..+........+..+|... ...+.+|+|||++.+....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~~- 180 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFSQ- 180 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCCh-
Confidence 469999999999999999998763 233444444444442210000011233444432 2356899999998753221
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc
Q 000973 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld 815 (1205)
.....|..+++..-.... +|.|||.++..+.
T Consensus 181 -~~~~~lf~li~~r~~~~s--~iiTsn~~~~~w~ 211 (259)
T PRK09183 181 -EEANLFFQVIAKRYEKGS--MILTSNLPFGQWD 211 (259)
T ss_pred -HHHHHHHHHHHHHHhcCc--EEEecCCCHHHHH
Confidence 222334445544322223 4668998865544
No 459
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.85 E-value=2.2e-06 Score=98.35 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=59.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
.+++|+|++||||||||.|||+++- +..+..+..+.++...-..-....+...+...+ ...||+||++..-.. .
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~--s 232 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM--S 232 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc--c
Confidence 5899999999999999999999863 345555555555432100000011223333333 347999999976432 2
Q ss_pred HHHHHHHHH-HHHh-cCCCCCeEEeccCCcCCcccc
Q 000973 782 EQLRAVLLT-LLEE-LPSHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 782 ~~~~~~ll~-lL~~-~~~~~~v~vIattn~~~~~Ld 815 (1205)
+.....|+. +++. +....+ +|.|||.+++.|.
T Consensus 233 ~~~~~~ll~~Il~~R~~~~~~--ti~TSNl~~~el~ 266 (306)
T PRK08939 233 SWVRDEVLGVILQYRMQEELP--TFFTSNFDFDELE 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHCCCe--EEEECCCCHHHHH
Confidence 232322322 3332 223233 4558998765554
No 460
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.84 E-value=7.7e-07 Score=87.44 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=53.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCC-ccccCCCCCCChhhHH-HHhhccccc-cCCceeeeccchhhHHhHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGL-PALLSDPSAKTPEEAL-VHIFGEARR-TTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~-~~l~~~~~~g~se~~~-~~lf~~A~~-~~p~ILfiDEid~l~~~~~ 781 (1205)
++||.|+||+|||++|+++|+.+ +..|.+|.. ++++-.-..|.+--.. ...|...+. .--.|||+|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp--- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP--- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H---
T ss_pred CEeeECCCccHHHHHHHHHHHHc-CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH---
Confidence 58999999999999999999998 778877754 2332100011100000 011211111 0125999999988665
Q ss_pred HHHHHHHHHHHHhc----CC-----CCCeEEeccCCcC
Q 000973 782 EQLRAVLLTLLEEL----PS-----HLPILLLGSSSVP 810 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~----~~-----~~~v~vIattn~~ 810 (1205)
++..+|+..|.+- .+ -.+.+||||-|..
T Consensus 77 -ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 77 -KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp -HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT
T ss_pred -HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc
Confidence 4455677777762 21 3578999999954
No 461
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.83 E-value=7.6e-07 Score=94.26 Aligned_cols=103 Identities=24% Similarity=0.324 Sum_probs=57.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccC----CCCCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS----DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~----~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.+++|+|++||||||||.||++++ .+..++.+..++|+. .+..+..+. ++.... ...+|+|||+....
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~----~~~~l~--~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEE----LLKRLK--RVDLLILDDLGYEP 121 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCH----HHHHHH--TSSCEEEETCTSS-
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhh----hcCccc--cccEecccccceee
Confidence 479999999999999999999864 245555566555543 111222222 222222 24699999997653
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000973 778 ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
. .+.....|..+++.--...+ +|.|||..+..+..
T Consensus 122 ~--~~~~~~~l~~ii~~R~~~~~--tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 122 L--SEWEAELLFEIIDERYERKP--TIITSNLSPSELEE 156 (178)
T ss_dssp ----HHHHHCTHHHHHHHHHT-E--EEEEESS-HHHHHT
T ss_pred e--cccccccchhhhhHhhcccC--eEeeCCCchhhHhh
Confidence 2 23333445555554322333 33489987655544
No 462
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.83 E-value=1.1e-05 Score=98.08 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=82.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC--------CCCChhhHHHHhhccccccCCceeeeccch
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP--------SAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~--------~~g~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
.++|+|++||||+++|+++.+... ..+|+.+++..+.... ..|..................++||||||+
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~ 243 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIG 243 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechh
Confidence 489999999999999999988653 3578888876542110 000000000110111122346799999999
Q ss_pred hhHHhHHHHHHHHHHHHH-HhcCC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccchhhhHHH
Q 000973 775 LWWENAHEQLRAVLLTLL-EELPS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL-~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~eR~~i~~~ 844 (1205)
.|....+..++..|..-. ..+.. ..++-||+||+.....+-. ...|+. + ..+.|.+|...+|..-+..
T Consensus 244 ~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~--~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~ 321 (445)
T TIGR02915 244 DLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA--EGTFREDLFYRIAEISITIPPLRSRDGDAVL 321 (445)
T ss_pred hCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH--cCCccHHHHHHhccceecCCCchhchhhHHH
Confidence 998877776544442211 00111 1367788888876433322 233331 1 5677999999999875444
Q ss_pred HHHH
Q 000973 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++..
T Consensus 322 l~~~ 325 (445)
T TIGR02915 322 LANA 325 (445)
T ss_pred HHHH
Confidence 4443
No 463
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=3.7e-05 Score=79.05 Aligned_cols=76 Identities=28% Similarity=0.347 Sum_probs=48.2
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh--hHHH------------------H--HHHHHHHHHHHHHHH
Q 000973 416 VLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSK------------------W--VGEAERQLKLLFEEA 473 (1205)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--l~~~------------------~--~g~~e~~l~~lf~~a 473 (1205)
++|+||||+|||+++..++..+...+..+.|+...... .... + ...........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999987665556555443321 1000 0 000111122234455
Q ss_pred hhcCCceEEEeccCCccc
Q 000973 474 QRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 474 ~~~~p~VL~IDEid~L~~ 491 (1205)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 566788999999998764
No 464
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.82 E-value=1.8e-05 Score=98.69 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=81.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc-CccccCCCccccCCCCCCCh--hhHHH-H--hhc--cccccCCceeeeccchh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLSDPSAKTP--EEALV-H--IFG--EARRTTPSILYIPQFNL 775 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~-~~~~~l~~~~l~~~~~~g~s--e~~~~-~--lf~--~A~~~~p~ILfiDEid~ 775 (1205)
.+|||.|+||||||++|++|++.+.. .+|+.+..... .+...|.- +..+. . .|. ..-....+|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t-~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVT-EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccc-hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 37999999999999999999998743 36777763211 11112221 01110 0 010 01112346999999999
Q ss_pred hHHhHHHHHHHHHHHHHHhcC-----------CCCCeEEeccCCcCC--ccccCCCccccCCCceee-ecCCCccchhhh
Q 000973 776 WWENAHEQLRAVLLTLLEELP-----------SHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQ-VEKPSTEDRSLF 841 (1205)
Q Consensus 776 l~~~~~~~~~~~ll~lL~~~~-----------~~~~v~vIattn~~~--~~Ld~~~~~~f~~r~ii~-~~~P~~~eR~~i 841 (1205)
+....+.. |+..|+.-. -..++.||||+|... ..|++.+..+|. .++. ..+|+.++|.+|
T Consensus 96 l~~~~q~~----Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~--l~v~~~~~~~~~er~ei 169 (589)
T TIGR02031 96 LDDGLSNR----LLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLA--LHVSLEDVASQDLRVEI 169 (589)
T ss_pred CCHHHHHH----HHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhcc--CeeecCCCCCHHHHHHH
Confidence 87655544 555665321 124678899888652 245553333333 3333 456778889999
Q ss_pred HHHHHH
Q 000973 842 LGRLIE 847 (1205)
Q Consensus 842 ~~~~l~ 847 (1205)
++..+.
T Consensus 170 l~~~~~ 175 (589)
T TIGR02031 170 VRRERC 175 (589)
T ss_pred HHHHHH
Confidence 988764
No 465
>PRK06921 hypothetical protein; Provisional
Probab=97.81 E-value=6.5e-06 Score=92.76 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=56.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc---cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchh-hH--
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNL-WW-- 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~---~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~-l~-- 777 (1205)
.+++|+|++||||||||.||++++. +..++.+...+++... ...-......+.... ...||+||+++. +.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~~~~~~~~~~~~--~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDFDLLEAKLNRMK--KVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHHHHHHHHHHHhc--CCCEEEEeccccccCCC
Confidence 4699999999999999999999863 3444444443433211 000011112222222 347999999954 11
Q ss_pred HhHHHHHHHHHHHHHHhcC-CCCCeEEeccCCcCCcccc
Q 000973 778 ENAHEQLRAVLLTLLEELP-SHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~~-~~~~v~vIattn~~~~~Ld 815 (1205)
....+.....|..+++..- ...+ +|.|||.++..|.
T Consensus 194 e~~t~~~~~~lf~iin~R~~~~k~--tIitsn~~~~el~ 230 (266)
T PRK06921 194 PRATEWQIEQMYSVLNYRYLNHKP--ILISSELTIDELL 230 (266)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHh
Confidence 1111222233444444332 2233 3457887766665
No 466
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=97.81 E-value=6.2e-06 Score=103.38 Aligned_cols=93 Identities=26% Similarity=0.379 Sum_probs=84.3
Q ss_pred hhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeec
Q 000973 909 RMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSR 986 (1205)
Q Consensus 909 ~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~ 986 (1205)
.+..+..+|.|..||+.. .+|+||.+|++|||++||+.+++++.|.+..+..+|+..+|.||..||.. +..|+.+
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~---~~~v~~~ 79 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDS---GDDVVRM 79 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCC---ccchhhc
Confidence 456788999999999865 78999999999999999999999999999999999999999999999998 5669999
Q ss_pred hhhhhhhHhhhhhccChh
Q 000973 987 GYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 987 A~~l~~~~~~~~~~~~~~ 1004 (1205)
+..+++.|.+.+..++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~ 97 (640)
T KOG1474|consen 80 KQSLEKLFPKKLRSMPSD 97 (640)
T ss_pred cccchhhccccccccccc
Confidence 999999998888777654
No 467
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.78 E-value=4e-06 Score=92.93 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=62.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCC--CChhhHHHHhhccccccCCceeeeccchhhHHhH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSA--KTPEEALVHIFGEARRTTPSILYIPQFNLWWENA 780 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~--g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~ 780 (1205)
+++|+|+|||||||||.+|++++. +..++.++.++++..... .........++.... ..+||+|||++.....
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s- 177 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTES- 177 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCC-
Confidence 699999999999999999999862 345566666665531100 001112223444333 3579999999886532
Q ss_pred HHHHHHHHHHHHHhc-CCCCCeEEeccCCcCCccccC
Q 000973 781 HEQLRAVLLTLLEEL-PSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 781 ~~~~~~~ll~lL~~~-~~~~~v~vIattn~~~~~Ld~ 816 (1205)
+.....|..+++.- ....+ +|.|||..+..|..
T Consensus 178 -~~~~~~l~~Ii~~Ry~~~~~--tiitSNl~~~~l~~ 211 (244)
T PRK07952 178 -RYEKVIINQIVDRRSSSKRP--TGMLTNSNMEEMTK 211 (244)
T ss_pred -HHHHHHHHHHHHHHHhCCCC--EEEeCCCCHHHHHH
Confidence 22223444555542 22233 44578877555543
No 468
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.76 E-value=1.3e-05 Score=98.57 Aligned_cols=133 Identities=12% Similarity=0.147 Sum_probs=81.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC---CCccccC----CCCCCChhhHHH-HhhccccccCCceeeeccchhh
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL---GLPALLS----DPSAKTPEEALV-HIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l---~~~~l~~----~~~~g~se~~~~-~lf~~A~~~~p~ILfiDEid~l 776 (1205)
++||+|+||||||++|+++++.+....|... +...+.. +...|+. .+. ..+. .+..++|+|||++.+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~---~A~~Gil~iDEi~~l 312 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALV---LADNGVCCIDEFDKM 312 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEE---ecCCCEEEEechhhC
Confidence 6999999999999999999998744444331 1111211 0001110 000 0111 223579999999998
Q ss_pred HHhHHHHHHHHHHHHHHhc----C-------CCCCeEEeccCCcCCc------------cccCCCccccCCCcee-eecC
Q 000973 777 WENAHEQLRAVLLTLLEEL----P-------SHLPILLLGSSSVPLA------------EVEGDPSTVFPLRSVY-QVEK 832 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~----~-------~~~~v~vIattn~~~~------------~Ld~~~~~~f~~r~ii-~~~~ 832 (1205)
....+.. |+..|+.- . -..++.||||+|-... .|++.+..+|+ .++ ..+.
T Consensus 313 ~~~~q~~----L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFd--Li~~~~d~ 386 (509)
T smart00350 313 DDSDRTA----IHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFD--LLFVVLDE 386 (509)
T ss_pred CHHHHHH----HHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCcee--eEEEecCC
Confidence 7655444 45555431 1 0247789999995433 57764445555 333 3578
Q ss_pred CCccchhhhHHHHHHH
Q 000973 833 PSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 833 P~~~eR~~i~~~~l~~ 848 (1205)
|+.+....|.++++..
T Consensus 387 ~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 387 VDEERDRELAKHVVDL 402 (509)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9999999999988864
No 469
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=7.1e-05 Score=93.19 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=75.4
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc-CCCc------c----------ccCCCCCCChhhHHHHhhccccc-----
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS-LGLP------A----------LLSDPSAKTPEEALVHIFGEARR----- 762 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~-l~~~------~----------l~~~~~~g~se~~~~~lf~~A~~----- 762 (1205)
.++|+||||||||++++++|..+ +..++. ++.. . -+..+ ....+.+..++..|..
T Consensus 112 illL~GP~GsGKTTl~~~la~~l-~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~--~s~~~~F~~fl~~a~~~~~~~ 188 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKEL-GIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF--QSQIEVFSEFLLRATNKLQML 188 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-hhHHHHHhhhhhhcccccccccchhhhhccccc--cchHHHHHHHHHHHHhhhccc
Confidence 48999999999999999999987 444433 1110 0 01111 1122344454444431
Q ss_pred -----cCCceeeeccchhhHHhHHHHHHHHHHH-HHHhcCCCCCeEEeccCCcCCcc-------ccC---CCcccc-CCC
Q 000973 763 -----TTPSILYIPQFNLWWENAHEQLRAVLLT-LLEELPSHLPILLLGSSSVPLAE-------VEG---DPSTVF-PLR 825 (1205)
Q Consensus 763 -----~~p~ILfiDEid~l~~~~~~~~~~~ll~-lL~~~~~~~~v~vIattn~~~~~-------Ld~---~~~~~f-~~r 825 (1205)
....|||||||+.++...... +..++. ... +.....+|+++|..+... ... ....+. ..+
T Consensus 189 g~~~~~~~~IILIDEiPn~~~r~~~~-lq~lLr~~~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~r 265 (637)
T TIGR00602 189 GDDLMTDKKIILVEDLPNQFYRDTRA-LHEILRWKYV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPR 265 (637)
T ss_pred ccccCCceeEEEeecchhhchhhHHH-HHHHHHHHhh--cCCCceEEEEecCCccccccccccccchhcccCHhHhcccc
Confidence 245699999999887554433 333333 222 222333444455333100 110 001122 112
Q ss_pred -ceeeecCCCccchhhhHHHHHHH
Q 000973 826 -SVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 826 -~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.+|.|.+.......+.++.++..
T Consensus 266 v~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 266 VSNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHh
Confidence 56889999999988888888764
No 470
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.75 E-value=1.8e-05 Score=99.94 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=74.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc----------------------------------cCccccCCCccccCCCCCCCh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE----------------------------------KFPVHSLGLPALLSDPSAKTP 749 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~----------------------------------~~~~~~l~~~~l~~~~~~g~s 749 (1205)
.++||.|++|||||++|++|++.++ ..+|+.+......... .|.-
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l-~G~~ 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRV-VGSL 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHc-CCcc
Confidence 3699999999999999999998874 1234433222111111 1210
Q ss_pred --hhHHH--------HhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhc----C-------CCCCeEEeccCC
Q 000973 750 --EEALV--------HIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEEL----P-------SHLPILLLGSSS 808 (1205)
Q Consensus 750 --e~~~~--------~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~----~-------~~~~v~vIattn 808 (1205)
+..+. .++. ....+|||||||+.+....+.. |+..|+.- . -..+++||+|+|
T Consensus 105 d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l~~~~q~~----Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~n 177 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLA---EAHRGILYIDEVNLLDDHLVDV----LLDAAAMGVNRVEREGLSVSHPARFVLIGTMN 177 (633)
T ss_pred cHHHHhhcCCeeecCccee---ecCCCeEEeChhhhCCHHHHHH----HHHHHhcCCEEEEECCceeeecCCeEEEEecC
Confidence 11110 1111 1234699999999987655444 55566431 1 124689999998
Q ss_pred cCCccccCCCccccCCCceeeecCCC-ccchhhhHHHHH
Q 000973 809 VPLAEVEGDPSTVFPLRSVYQVEKPS-TEDRSLFLGRLI 846 (1205)
Q Consensus 809 ~~~~~Ld~~~~~~f~~r~ii~~~~P~-~~eR~~i~~~~l 846 (1205)
.....|.+.+..+|. .++.++.|. .+++.+|++..+
T Consensus 178 p~eg~l~~~L~dR~~--l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 178 PEEGDLRPQLLDRFG--LCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred CCCCCCCHHHHhhcc--eEEEccCCCchHHHHHHHHHHH
Confidence 432345543333333 455566553 466777776543
No 471
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.75 E-value=2.2e-05 Score=96.07 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=83.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC----CCCChh-------hHHHHhhccccccCCceeeec
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAKTPE-------EALVHIFGEARRTTPSILYIP 771 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~----~~g~se-------~~~~~lf~~A~~~~p~ILfiD 771 (1205)
.+||.|++||||+++|++|.+... ..+|+.++++.+-... ..|... ......|. ....+.||||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEe
Confidence 489999999999999999998753 4688999876652110 001000 00011122 2345689999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccc
Q 000973 772 QFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTED 837 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~e 837 (1205)
||+.+....+.++ +.+|+.- .. ..++-||+||+.....+-. ...|+. + .++.|..|...+
T Consensus 240 ~i~~l~~~~q~~L----~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~--~~~~~~~L~~~l~~~~i~~PpLre 313 (469)
T PRK10923 240 EIGDMPLDVQTRL----LRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ--EGKFREDLFHRLNVIRVHLPPLRE 313 (469)
T ss_pred ccccCCHHHHHHH----HHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH--cCCchHHHHHHhcceeecCCCccc
Confidence 9999987777664 4444432 11 2356788888865333222 223321 1 467899999999
Q ss_pred hhhhHHHHHHHHH
Q 000973 838 RSLFLGRLIEAAV 850 (1205)
Q Consensus 838 R~~i~~~~l~~~~ 850 (1205)
|..-+..++..++
T Consensus 314 R~~Di~~l~~~~l 326 (469)
T PRK10923 314 RREDIPRLARHFL 326 (469)
T ss_pred chhhHHHHHHHHH
Confidence 9875555555443
No 472
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.74 E-value=5.6e-06 Score=95.72 Aligned_cols=104 Identities=20% Similarity=0.202 Sum_probs=58.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccCCC----CCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDP----SAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~~~----~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.+++|+|++||||||||.|||+++ .+..++.+..+.++... +.... .....+.... ...+|+||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhc--cCCEEEEeccCCCC
Confidence 469999999999999999999986 24455555555554321 00100 1111122222 24799999997764
Q ss_pred HhHHHHHHHHHHHHHHhc-CCCCCeEEeccCCcCCcccc
Q 000973 778 ENAHEQLRAVLLTLLEEL-PSHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~-~~~~~v~vIattn~~~~~Ld 815 (1205)
.. +.....|..+++.. ....+ +|.|||.++..|.
T Consensus 260 ~t--~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~ 294 (329)
T PRK06835 260 IT--EFSKSELFNLINKRLLRQKK--MIISTNLSLEELL 294 (329)
T ss_pred CC--HHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHH
Confidence 22 12223344444433 22222 4557887766654
No 473
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.74 E-value=6e-05 Score=93.41 Aligned_cols=174 Identities=16% Similarity=0.119 Sum_probs=103.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH--HHHHH--------HHHHHHhhcCCceEEE
Q 000973 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA--ERQLK--------LLFEEAQRNQPSIIFF 483 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~--e~~l~--------~lf~~a~~~~p~VL~I 483 (1205)
.||||.|+.||||++++++++..+.. ..+|..+....-....+|.. +..++ .++..|. ..||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~l 99 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVL 99 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEe
Confidence 48999999999999999999998753 13443333222122223322 11111 1222222 249999
Q ss_pred eccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----------cCCcEEEEcccccc---ccccccccCCCCccccccC
Q 000973 484 DEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRV---DAIDGALRRPGRFDREFNF 549 (1205)
Q Consensus 484 DEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~---~~ld~aL~r~gRf~~~I~~ 549 (1205)
||+..+ ...+++.|+..|+.-. ....++||++.|.. ..|.++|+. ||+..|.+
T Consensus 100 De~n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 100 AMAERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCcccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 999776 4678889999987421 12467888875432 238888888 99999999
Q ss_pred CCCCchhhh-------hhhhccccccCCCCchhHHHHHhhhhh--cc-cchhHHHHhHHHHHHHHHH
Q 000973 550 PLPGCEARA-------EILDIHTRKWKQPPSRELKSELAASCV--GY-CGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 550 ~~P~~eer~-------~Il~~~l~~~~~~~~~~~l~~LA~~t~--G~-sgadI~~L~~eA~~~a~rr 606 (1205)
+.|+..+.. .|......--...++..++..++..+. |. +.+-...+++-|...|.-+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~ 233 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA 233 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc
Confidence 988765432 222211111144566666666665444 32 4444445555555544443
No 474
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.72 E-value=5.5e-05 Score=91.79 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=97.3
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHH-----HHH-------HHHHHHHHhhcCCc
Q 000973 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEA-----ERQ-------LKLLFEEAQRNQPS 479 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~-----e~~-------l~~lf~~a~~~~p~ 479 (1205)
....++|+|.+||||+++|+++....... ..+|+.++|..+....+... ... ...+|. ....+
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~--~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~g 235 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARS--EKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGG 235 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCC--CCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCC
Confidence 34679999999999999999998765432 36788888876543322110 000 001112 22356
Q ss_pred eEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc---------CCcEEEEccccccccccccccCCCCccc-----
Q 000973 480 IIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RGQVVLIGATNRVDAIDGALRRPGRFDR----- 545 (1205)
Q Consensus 480 VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---------~~~viVI~atn~~~~ld~aL~r~gRf~~----- 545 (1205)
+||||||+.|. ..++..|+..++...- ..++.||++|+..- . .+...|+|..
T Consensus 236 tl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 236 TLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYR 301 (441)
T ss_pred EEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHH
Confidence 99999999995 3345567776653211 12456777776521 1 1112233421
Q ss_pred --cccCCCCCchhhhh----hhhcccccc----C---CCCchhHHHHHhhhhhcccchhHHHHhHHHHH
Q 000973 546 --EFNFPLPGCEARAE----ILDIHTRKW----K---QPPSRELKSELAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 546 --~I~~~~P~~eer~~----Il~~~l~~~----~---~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
.+.+..|...+|.+ +++.++..+ + ..++.+.+..|....=--+.++|.+++..|+.
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 34555565555533 444444331 1 23667777777665533366788888877664
No 475
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.71 E-value=3.4e-05 Score=81.91 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=53.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc----CccccCCCccccCCCCCCChhhHHHHhhccccc-cCC---ceeeeccchh
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGEARR-TTP---SILYIPQFNL 775 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~----~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~-~~p---~ILfiDEid~ 775 (1205)
|+++|.||||||||+.+.++|++|-| -.++.++.++--+ + ....+--..|..-+- .+| .||++||+|+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG---I-DvVRn~IK~FAQ~kv~lp~grhKIiILDEADS 124 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG---I-DVVRNKIKMFAQKKVTLPPGRHKIIILDEADS 124 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc---c-HHHHHHHHHHHHhhccCCCCceeEEEeeccch
Confidence 57999999999999999999998633 2355566544321 1 112222334443332 233 4999999999
Q ss_pred hHHhHHHHHHHHH
Q 000973 776 WWENAHEQLRAVL 788 (1205)
Q Consensus 776 l~~~~~~~~~~~l 788 (1205)
...+++..+..++
T Consensus 125 MT~gAQQAlRRtM 137 (333)
T KOG0991|consen 125 MTAGAQQALRRTM 137 (333)
T ss_pred hhhHHHHHHHHHH
Confidence 9888877765554
No 476
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00024 Score=81.14 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=85.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhc-------C-CeEEEEEec--chhhHHHHHHHHHHHHHHHHHHHh-----hcC
Q 000973 413 PRGVLLCGPPGTGKTLIARALACAASKA-------G-QKVSFYMRK--GADVLSKWVGEAERQLKLLFEEAQ-----RNQ 477 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~-------~-~~~~~~~i~--~~~l~~~~~g~~e~~l~~lf~~a~-----~~~ 477 (1205)
+...||+|+.|+||+.+|+++++.+.+. + ....+..++ +..+ .-..++.+.+.+. .+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-------~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-------SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-------CHHHHHHHHHHhccCCcccCC
Confidence 3457799999999999999999987321 1 111233333 2211 1123444444332 134
Q ss_pred CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhh
Q 000973 478 PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEAR 557 (1205)
Q Consensus 478 p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer 557 (1205)
.-|++||++|.+. ....+.||..|+. ....+++|..|+.+..|-+.+++ |+ .++.|.+++.++.
T Consensus 91 ~KvvII~~~e~m~-----------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l 154 (299)
T PRK07132 91 KKILIIKNIEKTS-----------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKI 154 (299)
T ss_pred ceEEEEecccccC-----------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHH
Confidence 5699999998773 4456679999985 34556666667677888888888 77 6799999998888
Q ss_pred hhhhhc
Q 000973 558 AEILDI 563 (1205)
Q Consensus 558 ~~Il~~ 563 (1205)
...|..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 777654
No 477
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.69 E-value=2.9e-05 Score=94.71 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=81.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC------------CCCChhhHHHHhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP------------SAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~------------~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
.+|+.|++||||+++|+++.+... +.+|+.+++..+-... +.|... .....|.. ...++|||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~-~~~g~~~~---a~~gtl~l 243 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQT-LRQGLFER---ANEGTLLL 243 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCC-CCCCceEE---CCCCEEEE
Confidence 489999999999999999987642 3578888876542110 001100 00112322 33579999
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCcc
Q 000973 771 PQFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTE 836 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~ 836 (1205)
|||+.|....+..+ +.+|+.- .. ..++-||+||+.....+-. ...|+.. ..+.|..|...
T Consensus 244 d~i~~l~~~~q~~L----~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~--~g~~~~~l~~~l~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEMPLVLQAKL----LRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK--EGTFREDLFYRLNVIHLILPPLR 317 (457)
T ss_pred echhhCCHHHHHHH----HHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH--cCCchHHHHHHhccceecCCChh
Confidence 99999987766664 4444431 11 2357889999876443322 2333311 46778999999
Q ss_pred chhhhHHHHHHH
Q 000973 837 DRSLFLGRLIEA 848 (1205)
Q Consensus 837 eR~~i~~~~l~~ 848 (1205)
+|..-+..++..
T Consensus 318 eR~~di~~l~~~ 329 (457)
T PRK11361 318 DRREDISLLANH 329 (457)
T ss_pred hchhhHHHHHHH
Confidence 998755544443
No 478
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.68 E-value=0.0001 Score=82.62 Aligned_cols=165 Identities=20% Similarity=0.345 Sum_probs=100.1
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH----
Q 000973 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS---- 456 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~---- 456 (1205)
+.|..+.-..|.+++..... ....+.|++.||.|+|||+++...-......+.+.-.+.++|.-...
T Consensus 26 l~g~~~~~~~l~~~lkqt~~---------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL---------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH---------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 46777777777776654211 24457899999999999998776655544444445555556532211
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhh-----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc
Q 000973 457 ---------------KWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD 516 (1205)
Q Consensus 457 ---------------~~~g~~e~~l~~lf~~a~~-----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~ 516 (1205)
+.+|.....+..++..... ..+.|+++||||.+++.. .+..+..|+..-. .
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-------rQtllYnlfDisq--s 167 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-------RQTLLYNLFDISQ--S 167 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-------hhHHHHHHHHHHh--h
Confidence 1123333444444444433 224566688999987531 2334444544443 3
Q ss_pred cCCcEEEEcccccccc---ccccccCCCCcccc-ccCCCC-Cchhhhhhhhccc
Q 000973 517 SRGQVVLIGATNRVDA---IDGALRRPGRFDRE-FNFPLP-GCEARAEILDIHT 565 (1205)
Q Consensus 517 ~~~~viVI~atn~~~~---ld~aL~r~gRf~~~-I~~~~P-~~eer~~Il~~~l 565 (1205)
.+..+.|||.|.+.+. +...+.+ ||.+. |+++++ ...+...|++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 4567899998887654 5677777 99765 665544 5677777777665
No 479
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.68 E-value=0.0003 Score=78.56 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=75.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc---Cc--cccCCCccccCCCCCCChhhHHHHhhccccc-------cCCceeeec
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELEK---FP--VHSLGLPALLSDPSAKTPEEALVHIFGEARR-------TTPSILYIP 771 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~---~~--~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~-------~~p~ILfiD 771 (1205)
|++|||||||||||...-+.|..+.+ .. +..++.++-.+ + .....-.+.|..++. .++-.|++|
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg---i-d~vr~qi~~fast~~~~~fst~~~fKlvILD 138 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG---I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILD 138 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC---C-cchHHHHHHHHhhccceeccccCceeEEEec
Confidence 48999999999999998888887644 11 22233332221 1 122333345555553 367899999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000973 772 QFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
|+|.....++..+.+ .......+..+. .-+|.+ ..+-+ +.+++. ..|.|.+-+.+.-.....++++
T Consensus 139 EADaMT~~AQnALRR----viek~t~n~rF~--ii~n~~-~ki~p--a~qsRc-trfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 139 EADAMTRDAQNALRR----VIEKYTANTRFA--TISNPP-QKIHP--AQQSRC-TRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred chhHhhHHHHHHHHH----HHHHhccceEEE--EeccCh-hhcCc--hhhccc-ccCCCCCCChhhhhhHHHHHHh
Confidence 999988777766554 333333333333 345666 55555 223321 1233555555666667777765
No 480
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00059 Score=74.42 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=106.2
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc-----hhhHHHHHHH------------HHHHHHHHHHHHhh-c
Q 000973 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-----ADVLSKWVGE------------AERQLKLLFEEAQR-N 476 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~-----~~l~~~~~g~------------~e~~l~~lf~~a~~-~ 476 (1205)
-+.++|+-|+|||.++|++...+... .+..+.++. ..+...++.+ .+..-+.+...... .
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999777666532 233344443 2222223222 22222333333333 4
Q ss_pred CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-cCC--cEEEEccccccccccccccCC------CCccccc
Q 000973 477 QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRG--QVVLIGATNRVDAIDGALRRP------GRFDREF 547 (1205)
Q Consensus 477 ~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-~~~--~viVI~atn~~~~ld~aL~r~------gRf~~~I 547 (1205)
.|.++++||+|.|.+ ..+..|.-.++... ..+ .++.||-. .|.+.++.+ -|++..|
T Consensus 131 r~v~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 131 RPVVLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred CCeEEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEE
Confidence 468999999998852 23333333332211 122 34555433 233322221 1676668
Q ss_pred cCCCCCchhhhhhhhccccccCC---CCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000973 548 NFPLPGCEARAEILDIHTRKWKQ---PPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 548 ~~~~P~~eer~~Il~~~l~~~~~---~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
.+++.+.++....|+.+++.-+. -++.+.+..+...+.| .+.-|.++|..|...+.....
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~ 258 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGE 258 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCC
Confidence 88999999888888888876533 3567777888888888 677788888888777766543
No 481
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00016 Score=81.95 Aligned_cols=144 Identities=11% Similarity=0.147 Sum_probs=91.6
Q ss_pred ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-------------------e
Q 000973 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-------------------K 443 (1205)
Q Consensus 383 Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-------------------~ 443 (1205)
++..+++.|+.++.. -+.+..+||+|| +||+++|+++|..+..... .
T Consensus 6 ~q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 345666677666644 144567899996 6899999999988743321 0
Q ss_pred EEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCC
Q 000973 444 VSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRG 519 (1205)
Q Consensus 444 ~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~ 519 (1205)
-.++.+... +.. -.-..++.+...+. .+...|++||++|.|. ....+.||..|+. ...
T Consensus 72 PD~~~i~p~---~~~--I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLEE--Pp~ 133 (290)
T PRK07276 72 SDVTVIEPQ---GQV--IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH-----------VNAANSLLKVIEE--PQS 133 (290)
T ss_pred CCeeeecCC---CCc--CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC-----------HHHHHHHHHHhcC--CCC
Confidence 111111110 000 11234454444433 2334699999999883 4567789999984 455
Q ss_pred cEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhh
Q 000973 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILD 562 (1205)
Q Consensus 520 ~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~ 562 (1205)
++++|..|+.++.|-|.+++ |+ ..|.|+. +.++..+++.
T Consensus 134 ~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 134 EIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 67888888888999999999 88 6677865 5555555554
No 482
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.66 E-value=5.9e-05 Score=84.83 Aligned_cols=183 Identities=21% Similarity=0.265 Sum_probs=94.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhc--------ccCccccCCCccc--------------cCCCCCCC-hhhHHHHhhccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHEL--------EKFPVHSLGLPAL--------------LSDPSAKT-PEEALVHIFGEA 760 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l--------~~~~~~~l~~~~l--------------~~~~~~g~-se~~~~~lf~~A 760 (1205)
|++||+|++|.|||++++...... ..+|++.+.++.- ...+.... ..+...+++...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 689999999999999998887642 1246666665421 11221122 122233345555
Q ss_pred cccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCC--CCCeEEeccCCcCCcccc--CCCccccCCCceeeecCCCcc
Q 000973 761 RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPS--HLPILLLGSSSVPLAEVE--GDPSTVFPLRSVYQVEKPSTE 836 (1205)
Q Consensus 761 ~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~--~~~v~vIattn~~~~~Ld--~~~~~~f~~r~ii~~~~P~~~ 836 (1205)
+...+-+|+|||++.++.+.... ...++.+|..+.+ .-+++.+||-..- ..|- +-++.+|. .+ .+|..+
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~~-qr~~Ln~LK~L~NeL~ipiV~vGt~~A~-~al~~D~QLa~RF~---~~--~Lp~W~ 214 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYRK-QREFLNALKFLGNELQIPIVGVGTREAY-RALRTDPQLASRFE---PF--ELPRWE 214 (302)
T ss_pred HHcCCcEEEeechHHHhcccHHH-HHHHHHHHHHHhhccCCCeEEeccHHHH-HHhccCHHHHhccC---Cc--cCCCCC
Confidence 66778899999999987553222 2334455555544 2355666654432 3332 25566665 33 344444
Q ss_pred chhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000973 837 DRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 837 eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.-..+ +.++..+-. ..|-+++.. ....+++..-...++-...++.++. .++..+++.
T Consensus 215 ~d~ef-~~LL~s~e~---~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 215 LDEEF-RRLLASFER---ALPLRKPSN-LASPELARRIHERSEGLIGELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCcHH-HHHHHHHHH---hCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhc
Confidence 33333 334433211 122222222 2223333222223334444566666 666666655
No 483
>PF13173 AAA_14: AAA domain
Probab=97.65 E-value=3.5e-05 Score=77.05 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=63.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcc-cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE-KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~-~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
-++|.||.|||||++++.+++.+. .-.++.++......... ...+ +.+.+.......+.+||||||+.+. .
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~-----~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL-ADPD--LLEYFLELIKPGKKYIFIDEIQYLP-----D 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH-hhhh--hHHHHHHhhccCCcEEEEehhhhhc-----c
Confidence 489999999999999999998762 23444444332211000 0000 2222222221256899999998863 2
Q ss_pred HHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC-ceeeecCCCccc
Q 000973 784 LRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR-SVYQVEKPSTED 837 (1205)
Q Consensus 784 ~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r-~ii~~~~P~~~e 837 (1205)
+...+..+++.. .++-||.|++.. ..+.......+.+| ..+++.+.+..|
T Consensus 76 ~~~~lk~l~d~~---~~~~ii~tgS~~-~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 76 WEDALKFLVDNG---PNIKIILTGSSS-SLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHHHHhc---cCceEEEEccch-HHHhhcccccCCCeEEEEEECCCCHHH
Confidence 333455555533 233333333333 23322334455555 455666666543
No 484
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0001 Score=85.31 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=74.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccc--cCCCCCC--ChhhHHHHhhcccc----ccCCceeeeccchhh
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPAL--LSDPSAK--TPEEALVHIFGEAR----RTTPSILYIPQFNLW 776 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l--~~~~~~g--~se~~~~~lf~~A~----~~~p~ILfiDEid~l 776 (1205)
.+||+||+|+|||++|+++++.+-... ..-.-+++ +..+ .| -.-..++.+...+. ....-|++||++|.+
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~-~~~~h~D~~~~~~~-~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m 105 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKS-QQREYVDIIEFKPI-NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM 105 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCeEEeccc-cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc
Confidence 479999999999999999999752110 00011111 0010 11 11234555554332 233459999999887
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000973 777 WENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
.. ...+.|+..|.+.+++ .+||+.| +.+ +.|.+.+.++- .+++|..|+.++...+++.
T Consensus 106 ~~----~a~naLLK~LEepp~~-t~~il~~-~~~-~~ll~TI~SRc---~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 106 TE----QAQNAFLKTIEEPPKG-VFIILLC-ENL-EQILDTIKSRC---QIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred CH----HHHHHHHHHhcCCCCC-eEEEEEe-CCh-HhCcHHHHhhc---eeeeCCCcCHHHHHHHHHH
Confidence 54 3455688888876543 3344444 545 55544222222 5788888888877665554
No 485
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.65 E-value=4.1e-05 Score=92.19 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=81.5
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccc-cCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHH
Q 000973 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~ 458 (1205)
.|-|++++|+.|.-.+.- ....-+...| ...--||||||.||||||.+.+.+++.+.+. .+..-.++.-++..
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yTSGkGsSavGLT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYTSGKGSSAVGLT 503 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eeecCCccchhcce
Confidence 356777776655332210 1112222222 2233589999999999999999999887432 22222222221110
Q ss_pred HHHHH-HHHHHHHHHH---hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC---------c--ccCCcEEE
Q 000973 459 VGEAE-RQLKLLFEEA---QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG---------L--DSRGQVVL 523 (1205)
Q Consensus 459 ~g~~e-~~l~~lf~~a---~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~---------~--~~~~~viV 523 (1205)
.+-+. ...+++.-+. ......|-+|||||.|- ....+.|+..|+. + .-+.+.-|
T Consensus 504 ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~-----------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SV 572 (804)
T KOG0478|consen 504 AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS-----------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSV 572 (804)
T ss_pred eeEEecCccceeeeecCcEEEcCCceEEchhhhhhh-----------HHHHHHHHHHHHHhhhhHhhcceeeecccccee
Confidence 00000 0011111110 01223488999999883 2222334444431 0 11235678
Q ss_pred Eccccccc-------------cccccccCCCCcccccc-CCCCCch
Q 000973 524 IGATNRVD-------------AIDGALRRPGRFDREFN-FPLPGCE 555 (1205)
Q Consensus 524 I~atn~~~-------------~ld~aL~r~gRf~~~I~-~~~P~~e 555 (1205)
||++|+.. .|++.|++ ||+.++- ++.||..
T Consensus 573 LAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 573 LAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 99999744 27899999 9987643 4556554
No 486
>PRK15115 response regulator GlrR; Provisional
Probab=97.64 E-value=3.3e-05 Score=93.92 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=82.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC------------CCCChhhHHHHhhccccccCCceeee
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP------------SAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~------------~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
.++|.|++||||+++|+++.+... +.+|+.+++..+-... +.|.. .....+|.. ...++|||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~---a~~gtl~l 234 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAV-SNREGLFQA---AEGGTLFL 234 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCc-cCCCCcEEE---CCCCEEEE
Confidence 589999999999999999988752 4688888876542110 00100 001112333 33579999
Q ss_pred ccchhhHHhHHHHHHHHHHHHH-HhcCC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCccchhh
Q 000973 771 PQFNLWWENAHEQLRAVLLTLL-EELPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~lL-~~~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~eR~~ 840 (1205)
|||+.|....+..++..|.+-- ..+.. ..++.||+||+.....+-. ...|+.. ..+.|..|...+|..
T Consensus 235 ~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~--~~~f~~~l~~~l~~~~i~lPpLr~R~e 312 (444)
T PRK15115 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA--RGEFREDLYYRLNVVSLKIPALAERTE 312 (444)
T ss_pred EccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH--cCCccHHHHHhhceeeecCCChHhccc
Confidence 9999998877766544432210 11111 2367888888865333222 3344321 577889999999986
Q ss_pred hHHHHHHH
Q 000973 841 FLGRLIEA 848 (1205)
Q Consensus 841 i~~~~l~~ 848 (1205)
=+..++..
T Consensus 313 Di~~l~~~ 320 (444)
T PRK15115 313 DIPLLANH 320 (444)
T ss_pred cHHHHHHH
Confidence 55544443
No 487
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.63 E-value=3.3e-05 Score=94.43 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=83.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC----CCC----ChhhHHHHhhccccccCCceeeeccch
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----SAK----TPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~----~~g----~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
.+++.|.+||||+++|+++..... ..+|+.+++..+-... .-| ..................+.||||||+
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 489999999999999999987642 4688888876542111 001 100011111111223346789999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccchhh
Q 000973 775 LWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~eR~~ 840 (1205)
.|....+..++. +|+.- .+ ..++-||+||+.....+-. ...|+. + .++.|.+|...+|..
T Consensus 239 ~l~~~~q~~ll~----~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~--~~~f~~~L~~rl~~~~i~lPpLr~R~~ 312 (463)
T TIGR01818 239 DMPLDAQTRLLR----VLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR--QGKFREDLFHRLNVIRIHLPPLRERRE 312 (463)
T ss_pred hCCHHHHHHHHH----HHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH--cCCcHHHHHHHhCcceecCCCcccchh
Confidence 998777666444 44431 11 2356788888866433322 233331 1 467889999998886
Q ss_pred hHHHHHHHH
Q 000973 841 FLGRLIEAA 849 (1205)
Q Consensus 841 i~~~~l~~~ 849 (1205)
=+..++..+
T Consensus 313 Di~~l~~~~ 321 (463)
T TIGR01818 313 DIPRLARHF 321 (463)
T ss_pred hHHHHHHHH
Confidence 666555544
No 488
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=4.3e-05 Score=88.71 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=52.3
Q ss_pred HHHHhhcccc----ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCce
Q 000973 752 ALVHIFGEAR----RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSV 827 (1205)
Q Consensus 752 ~~~~lf~~A~----~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~i 827 (1205)
.++++...+. ....-|++||++|.+.. ...|.|+..|++-+. ++++|.+|+.+ +.|.+-+.++. ..
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~--~t~fiL~t~~~-~~LLpTI~SRc---q~ 185 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNV----AAANALLKTLEEPPP--GTVFLLVSARI-DRLLPTILSRC---RQ 185 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCH----HHHHHHHHHhcCCCc--CcEEEEEECCh-hhCcHHHHhcC---EE
Confidence 4555444432 23345999999998754 445667788886544 55555666666 66665333333 46
Q ss_pred eeecCCCccchhhhHHH
Q 000973 828 YQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 828 i~~~~P~~~eR~~i~~~ 844 (1205)
+.|++|+.++....+..
T Consensus 186 i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 186 FPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEecCCCHHHHHHHHHH
Confidence 77999998877777653
No 489
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=5.7e-05 Score=88.87 Aligned_cols=131 Identities=19% Similarity=0.147 Sum_probs=75.7
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcc----------ccC---------------CCcccc--C-CCC-CC------Ch
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPV----------HSL---------------GLPALL--S-DPS-AK------TP 749 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~----------~~l---------------~~~~l~--~-~~~-~g------~s 749 (1205)
.+||+||+|+||+++|.++|+.+-.-+- ..+ .-|+++ . .+. .| -.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~ 122 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT 122 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccccc
Confidence 4999999999999999999997621100 000 001111 0 000 01 01
Q ss_pred hhHHHHhhccc----cccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC
Q 000973 750 EEALVHIFGEA----RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR 825 (1205)
Q Consensus 750 e~~~~~lf~~A----~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r 825 (1205)
-..++++...+ ....+-||+|||+|.+-. ...+.|+..|.+.+. .+++|.+|+.+ ..|.+.+.++.
T Consensus 123 VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~----~aanaLLK~LEepp~--~~~~IL~t~~~-~~llpti~SRc--- 192 (365)
T PRK07471 123 VDEVRELISFFGLTAAEGGWRVVIVDTADEMNA----NAANALLKVLEEPPA--RSLFLLVSHAP-ARLLPTIRSRC--- 192 (365)
T ss_pred HHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----HHHHHHHHHHhcCCC--CeEEEEEECCc-hhchHHhhccc---
Confidence 12344444332 234678999999998643 445567777776544 34444566666 45544222222
Q ss_pred ceeeecCCCccchhhhHHHH
Q 000973 826 SVYQVEKPSTEDRSLFLGRL 845 (1205)
Q Consensus 826 ~ii~~~~P~~~eR~~i~~~~ 845 (1205)
.++.|++|+.++-..++...
T Consensus 193 ~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 193 RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred eEEECCCCCHHHHHHHHHHh
Confidence 57789999988887777653
No 490
>PHA00729 NTP-binding motif containing protein
Probab=97.62 E-value=0.0002 Score=77.97 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.7
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000973 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+|+|+|+||||||+||.+||..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 491
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.62 E-value=2.1e-05 Score=78.46 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=57.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc-------cCccccCCCcccc-------------C-CCCC-CChhhHHHHhhcccc
Q 000973 704 PRLLLCGSEGTGVDHLGPAILHELE-------KFPVHSLGLPALL-------------S-DPSA-KTPEEALVHIFGEAR 761 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~-------~~~~~~l~~~~l~-------------~-~~~~-g~se~~~~~lf~~A~ 761 (1205)
..++++|++|+|||++++.++..+. ..+++.+..+... . .... .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 3588999999999999999998763 3444444433211 1 1101 122333334444444
Q ss_pred ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCC
Q 000973 762 RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSS 808 (1205)
Q Consensus 762 ~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn 808 (1205)
.....+|+|||+|.+. ...+++.|..+++ ...-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~---~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF---SDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH---THHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC---CHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 4444699999999975 3555555555554 3344666666553
No 492
>PRK06851 hypothetical protein; Provisional
Probab=97.60 E-value=9.4e-05 Score=86.29 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=29.3
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000973 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
+-++|.|+||||||++++.|+..+...++.+.++.
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~ 65 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLH 65 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45899999999999999999999977776666543
No 493
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00016 Score=79.99 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=79.3
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCe-----------------EEEEEecchhhHHHHHHHHHHHHHHHHHHH
Q 000973 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQK-----------------VSFYMRKGADVLSKWVGEAERQLKLLFEEA 473 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~-----------------~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a 473 (1205)
.++..+||+||.|+||..+|.++|+.+-..... -.++.+.... ..-.+.+.....+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccCc
Confidence 456789999999999999999999886432110 0111111100 0011222222222222122
Q ss_pred -hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCC
Q 000973 474 -QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLP 552 (1205)
Q Consensus 474 -~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P 552 (1205)
..++.-|++|+++|.| .....+.||..++. ...++++|..|+.++.+.+.+++ |+ ..+.|+.+
T Consensus 84 ~e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 84 VESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred hhcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 1123469999999988 45677889999994 56678888889989999999999 87 44667665
No 494
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.59 E-value=0.00016 Score=70.05 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=22.3
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhc
Q 000973 416 VLLCGPPGTGKTLIARALACAASKA 440 (1205)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~ 440 (1205)
|+|+||||+|||++|+.||..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999988643
No 495
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.58 E-value=5.7e-05 Score=84.68 Aligned_cols=206 Identities=21% Similarity=0.234 Sum_probs=117.9
Q ss_pred ccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000973 368 QPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 368 ~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
..+...+...|+.|+|.....+.+.+-... +.- ---.+||.|.+||||-++|+++.....+. ..+|+
T Consensus 193 ~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k-------~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~--~~pFl 259 (511)
T COG3283 193 QNVAAQDVSGFEQIVAVSPKMKHVVEQAQK-------LAM----LDAPLLITGETGTGKDLLAKACHLASPRH--SKPFL 259 (511)
T ss_pred hhcccccccchHHHhhccHHHHHHHHHHHH-------hhc----cCCCeEEecCCCchHHHHHHHHhhcCccc--CCCee
Confidence 334444667788888888777666542211 111 12358999999999999999987665433 57899
Q ss_pred EecchhhHH-----HHHHHHH--HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-c--
Q 000973 448 MRKGADVLS-----KWVGEAE--RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-S-- 517 (1205)
Q Consensus 448 ~i~~~~l~~-----~~~g~~e--~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-~-- 517 (1205)
.++|+.+-. ..+|... .-...+|+.|.++ -+|+|||..+ +..++..||..+..-. .
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRV 325 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRV 325 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeec
Confidence 999976542 2233222 3345678887766 8999999766 4567777888875321 1
Q ss_pred ------CCcEEEEcccccc--ccccccccCCCCcc--ccccCCCCCchhhhhh--------hhccccccCC---CCchhH
Q 000973 518 ------RGQVVLIGATNRV--DAIDGALRRPGRFD--REFNFPLPGCEARAEI--------LDIHTRKWKQ---PPSREL 576 (1205)
Q Consensus 518 ------~~~viVI~atn~~--~~ld~aL~r~gRf~--~~I~~~~P~~eer~~I--------l~~~l~~~~~---~~~~~~ 576 (1205)
.-+|.||+||..+ +.+...-.|..-|. .++.+..|...+|..= ++.++.+.+. .++.++
T Consensus 326 Gee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~ 405 (511)
T COG3283 326 GEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADL 405 (511)
T ss_pred CCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHH
Confidence 1258899988652 22333222221121 3444555555554332 2233333332 345555
Q ss_pred HHHHhhhhhcccchhHHHHhHHHH
Q 000973 577 KSELAASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 577 l~~LA~~t~G~sgadI~~L~~eA~ 600 (1205)
+..|...-=--+-+++.+++-.|+
T Consensus 406 ~~~L~~y~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 406 LTVLTRYAWPGNVRQLKNAIYRAL 429 (511)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHH
Confidence 555544322224456666554444
No 496
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=7.1e-05 Score=87.61 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=75.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc---c--ccCC----------------Ccccc---CC--CCCC-----ChhhHH
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFP---V--HSLG----------------LPALL---SD--PSAK-----TPEEAL 753 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~---~--~~l~----------------~~~l~---~~--~~~g-----~se~~~ 753 (1205)
.+||+||+|+|||++|..+|+.+...+ . ..+. -++++ .. ...| -+-..+
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i 126 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI 126 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH
Confidence 499999999999999999999862210 0 0000 01111 00 0000 011233
Q ss_pred HHhhccc----cccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceee
Q 000973 754 VHIFGEA----RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQ 829 (1205)
Q Consensus 754 ~~lf~~A----~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~ 829 (1205)
+++.... .....-||+|||+|.+-... .+.|+..|.+.+. ..+||+. |+.+ ..|.+.+.++. .++.
T Consensus 127 R~l~~~l~~~~~~g~~rVviIDeAd~l~~~a----anaLLk~LEEpp~-~~~fiLi-t~~~-~~llptIrSRc---~~i~ 196 (351)
T PRK09112 127 RRVGHFLSQTSGDGNWRIVIIDPADDMNRNA----ANAILKTLEEPPA-RALFILI-SHSS-GRLLPTIRSRC---QPIS 196 (351)
T ss_pred HHHHHHhhhccccCCceEEEEEchhhcCHHH----HHHHHHHHhcCCC-CceEEEE-ECCh-hhccHHHHhhc---cEEE
Confidence 3333222 23345699999999986533 4557788877544 3444444 4555 45444333332 5788
Q ss_pred ecCCCccchhhhHHH
Q 000973 830 VEKPSTEDRSLFLGR 844 (1205)
Q Consensus 830 ~~~P~~~eR~~i~~~ 844 (1205)
|++|+.++...+++.
T Consensus 197 l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 197 LKPLDDDELKKALSH 211 (351)
T ss_pred ecCCCHHHHHHHHHH
Confidence 999999998888876
No 497
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.57 E-value=0.00014 Score=83.50 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=68.5
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh--------------hHHHHHHHHHHHHHHHHHHHh
Q 000973 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--------------VLSKWVGEAERQLKLLFEEAQ 474 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--------------l~~~~~g~~e~~l~~lf~~a~ 474 (1205)
|++..+-++|+||||||||+||-.++..+...+..+.|+.....- ++-......+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 567777899999999999999998887776666555555322210 000001112333333333445
Q ss_pred hcCCceEEEeccCCcccccch------hhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000973 475 RNQPSIIFFDEIDGLAPVRSS------KQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~~r~~------~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
...+.+||||-+-+|.+...- .......+.+.+++..|..+....++.+|.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567889999999998864210 00112234445555555544445566666553
No 498
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=6.6e-05 Score=87.47 Aligned_cols=129 Identities=15% Similarity=0.077 Sum_probs=72.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccc---------------cCCCccccCCCCCCC--hhhHHHHhhcccc----cc
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELEKFPVH---------------SLGLPALLSDPSAKT--PEEALVHIFGEAR----RT 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~---------------~l~~~~l~~~~~~g~--se~~~~~lf~~A~----~~ 763 (1205)
.+||+||+|+||+++|.++++.+-...-. .-.-+++.--...|. .-..++.+...+. ..
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~ 109 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVES 109 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCccc
Confidence 47999999999999999999875211100 000111110000111 1234555443332 22
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000973 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
..-|++||++|.+-. ...+.|+..|.+.+. ..+||+ +|+.+ ..|.+.+.++. .+++|.+|+.++...+++
T Consensus 110 ~~kvviI~~a~~~~~----~a~NaLLK~LEEPp~-~~~~Il-~t~~~-~~ll~TIrSRc---~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 110 NKKVYIIEHADKMTA----SAANSLLKFLEEPSG-GTTAIL-LTENK-HQILPTILSRC---QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CceEEEeehHhhhCH----HHHHHHHHHhcCCCC-CceEEE-EeCCh-HhCcHHHHhhc---eeeeCCCCCHHHHHHHHH
Confidence 345999999988654 344567778877554 333444 55545 45444222222 578888898887655553
No 499
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.51 E-value=0.00043 Score=76.22 Aligned_cols=42 Identities=36% Similarity=0.496 Sum_probs=34.7
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000973 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
|++...-++|+|+||+|||+++..+|..+...+..+.|+...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 566677789999999999999999998887667677776655
No 500
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.50 E-value=6.5e-05 Score=91.18 Aligned_cols=139 Identities=20% Similarity=0.178 Sum_probs=82.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC----C----CCChhhHHHHhhccccccCCceeeeccch
Q 000973 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP----S----AKTPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~----~----~g~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
.++++|.+||||+++|+++..... ..+|+.+++..+.... . .|.................+++||||||+
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 489999999999999999987642 4689998876542110 0 01100000000111223457899999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhcC-----C----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCccchhh
Q 000973 775 LWWENAHEQLRAVLLTLLEELP-----S----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~~-----~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~eR~~ 840 (1205)
.+....+..+ +.+|+.-. . ..++-||+||+.++..+-. ...|+.. ..+.|..|...+|..
T Consensus 244 ~l~~~~q~~l----~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~--~~~~~~~l~~~l~~~~i~~ppLreR~~ 317 (441)
T PRK10365 244 DISPMMQVRL----LRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN--AGRFRQDLYYRLNVVAIEVPSLRQRRE 317 (441)
T ss_pred cCCHHHHHHH----HHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH--cCCchHHHHHHhccceecCCChhhcch
Confidence 9988776664 34443311 1 1256677777766333222 3344321 467889999999887
Q ss_pred hHHHHHHHH
Q 000973 841 FLGRLIEAA 849 (1205)
Q Consensus 841 i~~~~l~~~ 849 (1205)
=+..++..+
T Consensus 318 Di~~l~~~~ 326 (441)
T PRK10365 318 DIPLLAGHF 326 (441)
T ss_pred hHHHHHHHH
Confidence 555555444
Done!