Query 000974
Match_columns 1205
No_of_seqs 828 out of 5573
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.6E-73 5.3E-78 714.9 19.1 490 374-899 199-702 (806)
2 1ypw_A Transitional endoplasmi 100.0 6.1E-52 2.1E-56 529.5 17.8 489 374-898 199-701 (806)
3 4b4t_J 26S protease regulatory 100.0 6.2E-43 2.1E-47 405.7 18.6 251 371-643 140-393 (405)
4 4b4t_I 26S protease regulatory 100.0 4E-42 1.4E-46 399.3 17.0 252 370-643 173-427 (437)
5 4b4t_M 26S protease regulatory 100.0 1.8E-41 6.2E-46 399.4 16.1 253 372-646 174-429 (434)
6 4b4t_H 26S protease regulatory 100.0 4.2E-41 1.4E-45 394.3 18.3 249 372-642 202-453 (467)
7 4b4t_L 26S protease subunit RP 100.0 2E-41 6.8E-46 399.4 15.2 250 372-643 174-426 (437)
8 4b4t_K 26S protease regulatory 100.0 4.7E-40 1.6E-44 387.3 15.0 247 371-639 164-414 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.1E-38 3.9E-43 399.9 16.9 283 352-644 454-748 (806)
10 2x8a_A Nuclear valosin-contain 100.0 1.3E-32 4.5E-37 309.0 15.9 261 374-645 5-270 (274)
11 3hu3_A Transitional endoplasmi 100.0 9.2E-33 3.2E-37 333.2 13.5 285 374-664 199-484 (489)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.4E-32 8.2E-37 314.2 14.2 229 373-608 6-235 (322)
13 3eie_A Vacuolar protein sortin 100.0 5.9E-32 2E-36 311.2 16.2 265 372-644 11-303 (322)
14 4b4t_J 26S protease regulatory 100.0 3.6E-33 1.2E-37 323.9 4.9 230 639-898 130-372 (405)
15 3cf0_A Transitional endoplasmi 100.0 1.2E-31 4.1E-36 305.7 13.3 264 373-642 9-284 (301)
16 2qp9_X Vacuolar protein sortin 100.0 3.2E-31 1.1E-35 308.9 15.4 226 374-607 46-272 (355)
17 1r6b_X CLPA protein; AAA+, N-t 100.0 9.9E-31 3.4E-35 334.6 19.6 424 375-849 182-669 (758)
18 4b4t_I 26S protease regulatory 100.0 6.8E-32 2.3E-36 313.6 6.7 224 645-898 170-406 (437)
19 4b4t_M 26S protease regulatory 100.0 1.9E-31 6.4E-36 314.3 7.9 228 641-898 165-405 (434)
20 4b4t_L 26S protease subunit RP 100.0 2.4E-31 8.3E-36 313.6 7.4 228 641-898 165-405 (437)
21 2zan_A Vacuolar protein sortin 100.0 1.8E-30 6.3E-35 311.2 12.2 229 373-608 128-357 (444)
22 3pxi_A Negative regulator of g 100.0 6.4E-30 2.2E-34 326.7 16.9 413 375-849 176-678 (758)
23 4b4t_H 26S protease regulatory 100.0 4.2E-31 1.4E-35 309.9 5.0 221 648-898 200-433 (467)
24 2ce7_A Cell division protein F 100.0 1.9E-29 6.4E-34 302.0 16.7 246 374-642 11-259 (476)
25 4b4t_K 26S protease regulatory 100.0 1.4E-30 4.9E-35 306.7 6.2 223 646-898 161-397 (428)
26 3h4m_A Proteasome-activating n 100.0 5E-29 1.7E-33 281.2 14.7 249 372-642 10-261 (285)
27 2qz4_A Paraplegin; AAA+, SPG7, 100.0 9.4E-29 3.2E-33 274.9 14.2 247 374-642 1-252 (262)
28 3d8b_A Fidgetin-like protein 1 100.0 3.1E-28 1.1E-32 284.0 16.9 259 374-644 79-339 (357)
29 1qvr_A CLPB protein; coiled co 100.0 1.6E-28 5.4E-33 317.3 15.1 206 375-603 166-392 (854)
30 3b9p_A CG5977-PA, isoform A; A 100.0 3.1E-28 1.1E-32 276.4 14.8 258 374-643 16-276 (297)
31 1lv7_A FTSH; alpha/beta domain 99.9 5.4E-28 1.8E-32 268.9 14.5 244 374-640 7-253 (257)
32 3vfd_A Spastin; ATPase, microt 99.9 1.2E-27 3.9E-32 282.6 16.8 258 373-642 109-368 (389)
33 2dhr_A FTSH; AAA+ protein, hex 99.9 1.4E-27 4.8E-32 287.3 16.2 248 374-644 26-276 (499)
34 1ypw_A Transitional endoplasmi 99.9 1.2E-28 4.1E-33 314.8 4.6 264 373-642 471-746 (806)
35 1ixz_A ATP-dependent metallopr 99.9 2.8E-26 9.4E-31 254.6 16.3 241 373-636 10-253 (254)
36 2r62_A Cell division protease 99.9 1.5E-27 5.1E-32 266.7 -0.6 249 374-645 6-259 (268)
37 1iy2_A ATP-dependent metallopr 99.9 4.8E-25 1.6E-29 248.2 16.5 241 373-636 34-277 (278)
38 2c9o_A RUVB-like 1; hexameric 99.9 5.6E-24 1.9E-28 256.1 10.6 203 374-598 32-262 (456)
39 3dai_A ATPase family AAA domai 99.9 9.3E-24 3.2E-28 209.4 5.4 126 890-1015 2-129 (130)
40 3cf0_A Transitional endoplasmi 99.9 2.7E-23 9.3E-28 236.6 4.0 224 645-898 3-239 (301)
41 1xwi_A SKD1 protein; VPS4B, AA 99.9 5E-23 1.7E-27 236.6 5.6 221 649-898 4-233 (322)
42 3d7c_A General control of amin 99.9 6.6E-23 2.3E-27 198.1 2.7 104 897-1003 6-109 (112)
43 2oss_A HUNK1 protein, bromodom 99.9 6.1E-23 2.1E-27 202.4 2.2 104 898-1004 21-126 (127)
44 3t15_A Ribulose bisphosphate c 99.9 3.8E-22 1.3E-26 226.2 9.1 175 408-594 31-222 (293)
45 2x8a_A Nuclear valosin-contain 99.9 1.3E-22 4.4E-27 227.8 4.6 223 651-898 4-236 (274)
46 4alg_A Bromodomain-containing 99.8 1E-22 3.6E-27 207.2 2.3 104 898-1004 32-137 (154)
47 2d9e_A Peregrin; four-helix bu 99.8 1E-22 3.5E-27 199.1 2.0 104 898-1004 7-110 (121)
48 2dkw_A Hypothetical protein KI 99.8 2.6E-22 8.8E-27 198.4 4.7 120 893-1017 7-128 (131)
49 2i7k_A Bromodomain-containing 99.8 1.6E-22 5.5E-27 196.2 3.2 103 896-1001 6-108 (117)
50 2dat_A Possible global transcr 99.8 1.9E-22 6.4E-27 198.0 2.7 103 898-1003 13-121 (123)
51 3q2e_A Bromodomain and WD repe 99.8 1.4E-22 4.8E-27 199.1 1.8 107 898-1006 10-116 (123)
52 1e6i_A Transcriptional activat 99.8 2.1E-22 7.3E-27 196.9 2.0 100 901-1003 16-115 (121)
53 3eie_A Vacuolar protein sortin 99.8 2.3E-22 7.9E-27 231.2 1.9 223 647-899 8-239 (322)
54 3mb3_A PH-interacting protein; 99.8 2.7E-22 9.4E-27 200.4 2.1 109 898-1008 21-129 (135)
55 3g0l_A Hwalp4, bromodomain adj 99.8 3.7E-22 1.3E-26 194.5 2.0 98 901-1001 16-113 (117)
56 2ouo_A HUNK1 protein, bromodom 99.8 5.8E-22 2E-26 196.2 2.8 99 902-1003 26-129 (130)
57 3nxb_A CAT eye syndrome critic 99.8 5.1E-22 1.8E-26 193.2 2.0 100 898-1000 16-115 (116)
58 3uv4_A Second bromodomain of h 99.8 8.1E-22 2.8E-26 201.2 3.5 117 897-1016 28-145 (158)
59 3mb4_A Protein polybromo-1; PB 99.8 6E-22 2.1E-26 194.8 1.6 103 898-1003 15-123 (124)
60 3hme_A Bromodomain-containing 99.8 8E-22 2.7E-26 193.4 2.1 100 898-1000 13-112 (123)
61 2qp9_X Vacuolar protein sortin 99.8 6.8E-22 2.3E-26 230.2 1.8 220 649-898 43-271 (355)
62 3rcw_A Bromodomain-containing 99.8 9.7E-22 3.3E-26 196.4 2.3 107 896-1005 11-117 (135)
63 2grc_A Probable global transcr 99.8 6.6E-22 2.3E-26 195.7 1.0 103 899-1004 12-121 (129)
64 3fkm_X Signaling protein; brom 99.8 1.1E-21 3.9E-26 202.1 2.6 105 897-1004 20-126 (166)
65 3mqm_A Probable histone-lysine 99.8 7.5E-22 2.6E-26 194.8 1.2 109 897-1008 8-122 (126)
66 3jvl_A Bromodomain-containing 99.8 6.2E-22 2.1E-26 193.8 0.5 101 901-1004 12-117 (120)
67 3ljw_A Protein polybromo-1; al 99.8 7.6E-22 2.6E-26 193.0 0.6 104 898-1004 8-117 (120)
68 3p1f_A CREB-binding protein; s 99.8 7.8E-22 2.7E-26 192.8 0.6 103 898-1003 11-116 (119)
69 2ce7_A Cell division protein F 99.8 5E-21 1.7E-25 229.2 6.7 215 652-897 11-238 (476)
70 2zan_A Vacuolar protein sortin 99.8 8.4E-22 2.9E-26 236.1 -1.2 222 648-898 125-355 (444)
71 2yyn_A Transcription intermedi 99.8 2.2E-21 7.6E-26 193.3 1.7 100 901-1004 23-124 (135)
72 3k2j_A Protein polybromo-1; PB 99.8 2.3E-21 7.7E-26 191.7 1.1 88 913-1003 38-125 (130)
73 3hu3_A Transitional endoplasmi 99.8 8.7E-21 3E-25 228.9 4.2 219 652-898 199-425 (489)
74 3iu5_A Protein polybromo-1; PB 99.8 3.2E-21 1.1E-25 187.5 0.3 98 902-1002 9-112 (116)
75 3syl_A Protein CBBX; photosynt 99.8 5E-20 1.7E-24 209.8 8.5 218 380-607 32-266 (309)
76 3h4m_A Proteasome-activating n 99.8 4.2E-20 1.4E-24 208.1 5.6 218 651-898 11-241 (285)
77 3tlp_A Protein polybromo-1; PB 99.8 2.1E-20 7.1E-25 190.2 2.7 90 912-1004 45-134 (150)
78 1lv7_A FTSH; alpha/beta domain 99.8 7.5E-20 2.6E-24 203.1 7.1 214 652-896 7-233 (257)
79 2ri7_A Nucleosome-remodeling f 99.8 2.1E-20 7.2E-25 195.4 2.2 99 901-1002 75-173 (174)
80 1g41_A Heat shock protein HSLU 99.8 6.6E-20 2.3E-24 216.4 6.7 169 380-562 16-189 (444)
81 2dhr_A FTSH; AAA+ protein, hex 99.8 2.3E-19 7.8E-24 216.0 8.6 214 652-896 26-252 (499)
82 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.4E-19 4.9E-24 200.8 4.9 176 703-896 39-230 (262)
83 3vfd_A Spastin; ATPase, microt 99.7 3.5E-19 1.2E-23 210.1 4.4 224 645-898 103-336 (389)
84 3o36_A Transcription intermedi 99.7 1.5E-19 5.3E-24 190.3 1.2 101 898-1002 81-183 (184)
85 3t15_A Ribulose bisphosphate c 99.7 1.3E-19 4.6E-24 205.3 0.3 163 703-887 36-222 (293)
86 3uv5_A Transcription initiatio 99.7 2.9E-19 9.9E-24 198.7 2.9 107 898-1007 14-120 (265)
87 3d8b_A Fidgetin-like protein 1 99.7 4.2E-19 1.4E-23 206.9 3.5 220 651-900 78-307 (357)
88 3b9p_A CG5977-PA, isoform A; A 99.7 3E-19 1E-23 202.4 2.1 219 651-899 15-244 (297)
89 3uv5_A Transcription initiatio 99.7 5.7E-19 2E-23 196.3 3.5 111 899-1012 137-248 (265)
90 2r62_A Cell division protease 99.7 4.1E-19 1.4E-23 198.2 2.2 169 703-889 44-226 (268)
91 3aad_A Transcription initiatio 99.7 7.9E-19 2.7E-23 197.5 2.8 111 901-1014 172-283 (292)
92 3uk6_A RUVB-like 2; hexameric 99.7 1.7E-17 5.7E-22 193.7 13.6 224 373-639 38-330 (368)
93 1ixz_A ATP-dependent metallopr 99.7 3.9E-18 1.3E-22 188.9 6.8 215 651-896 10-237 (254)
94 3u5n_A E3 ubiquitin-protein li 99.7 9.1E-19 3.1E-23 187.7 1.5 102 899-1004 82-203 (207)
95 2ro1_A Transcription intermedi 99.7 8.7E-19 3E-23 184.5 0.9 95 902-1004 80-179 (189)
96 3aad_A Transcription initiatio 99.7 1.7E-18 5.8E-23 194.8 2.1 105 898-1005 47-151 (292)
97 1ofh_A ATP-dependent HSL prote 99.7 3.7E-17 1.3E-21 185.6 10.7 245 379-640 15-300 (310)
98 3cmw_A Protein RECA, recombina 99.7 5E-18 1.7E-22 226.0 2.9 108 706-815 1085-1223(1706)
99 3m6a_A ATP-dependent protease 99.7 6.5E-17 2.2E-21 198.3 9.9 232 375-639 77-341 (543)
100 1iy2_A ATP-dependent metallopr 99.7 2.5E-17 8.5E-22 185.1 4.7 214 652-896 35-261 (278)
101 2r0y_A Chromatin structure-rem 99.7 1.8E-17 6.2E-22 187.4 2.9 87 912-1001 177-263 (311)
102 3hws_A ATP-dependent CLP prote 99.6 2E-16 6.8E-21 184.7 10.9 241 381-637 17-347 (363)
103 3pfi_A Holliday junction ATP-d 99.6 7.2E-16 2.5E-20 177.8 14.4 213 375-638 25-253 (338)
104 2r10_A Chromatin structure-rem 99.6 2.2E-17 7.6E-22 191.0 1.5 87 912-1001 227-313 (361)
105 2z4s_A Chromosomal replication 99.6 7.2E-16 2.5E-20 184.4 14.6 228 372-640 98-333 (440)
106 1d2n_A N-ethylmaleimide-sensit 99.6 5.3E-16 1.8E-20 173.6 10.3 193 379-587 33-229 (272)
107 3cmw_A Protein RECA, recombina 99.6 4E-16 1.4E-20 207.9 9.0 156 374-530 1015-1218(1706)
108 2chg_A Replication factor C sm 99.6 1.6E-15 5.4E-20 162.4 11.7 195 374-600 12-208 (226)
109 3pxg_A Negative regulator of g 99.6 9.7E-16 3.3E-20 184.8 10.8 194 375-606 176-388 (468)
110 1l8q_A Chromosomal replication 99.6 3.6E-15 1.2E-19 171.1 13.9 202 373-602 5-214 (324)
111 1hqc_A RUVB; extended AAA-ATPa 99.6 5E-15 1.7E-19 169.5 13.6 192 375-600 8-215 (324)
112 1jbk_A CLPB protein; beta barr 99.6 3.5E-15 1.2E-19 155.9 9.9 165 375-562 18-195 (195)
113 1um8_A ATP-dependent CLP prote 99.6 4.3E-15 1.5E-19 174.2 11.6 243 380-639 22-365 (376)
114 3bos_A Putative DNA replicatio 99.6 3.9E-15 1.3E-19 162.0 10.3 210 374-637 23-241 (242)
115 2v1u_A Cell division control p 99.6 2.1E-14 7.3E-19 167.7 16.9 232 374-639 14-276 (387)
116 3pvs_A Replication-associated 99.6 5.9E-15 2E-19 176.3 12.1 208 375-640 22-245 (447)
117 2r10_A Chromatin structure-rem 99.6 3.4E-16 1.2E-20 181.0 1.0 98 898-1000 78-178 (361)
118 1njg_A DNA polymerase III subu 99.5 9.5E-15 3.2E-19 158.2 10.4 191 375-600 19-232 (250)
119 2r0y_A Chromatin structure-rem 99.5 5.1E-16 1.7E-20 175.6 0.3 83 913-1000 45-128 (311)
120 4fcw_A Chaperone protein CLPB; 99.5 5.2E-15 1.8E-19 168.3 8.5 210 379-607 17-282 (311)
121 4akg_A Glutathione S-transfera 99.5 7.5E-15 2.6E-19 203.8 10.5 340 411-775 1265-1678(2695)
122 3te6_A Regulatory protein SIR3 99.5 1.5E-14 5E-19 164.4 11.0 202 381-606 22-289 (318)
123 1sxj_A Activator 1 95 kDa subu 99.5 1.5E-14 5.2E-19 176.5 10.7 203 374-599 34-252 (516)
124 2c9o_A RUVB-like 1; hexameric 99.5 5.1E-16 1.7E-20 186.7 -2.5 141 703-847 63-240 (456)
125 3u61_B DNA polymerase accessor 99.5 3.5E-14 1.2E-18 162.8 12.5 174 374-586 21-207 (324)
126 2chq_A Replication factor C sm 99.5 2.7E-14 9.2E-19 162.5 9.4 182 374-586 12-195 (319)
127 1iqp_A RFCS; clamp loader, ext 99.5 5.4E-14 1.9E-18 160.6 11.9 192 374-597 20-213 (327)
128 3pxi_A Negative regulator of g 99.5 1.3E-14 4.5E-19 185.3 7.5 206 378-606 490-727 (758)
129 1g8p_A Magnesium-chelatase 38 99.5 5.1E-14 1.7E-18 162.8 11.2 223 374-640 19-323 (350)
130 1r6b_X CLPA protein; AAA+, N-t 99.5 3.9E-14 1.3E-18 181.1 10.4 200 379-606 458-718 (758)
131 1sxj_D Activator 1 41 kDa subu 99.5 5.7E-14 1.9E-18 162.5 10.8 196 374-601 32-240 (353)
132 1sxj_B Activator 1 37 kDa subu 99.5 8.7E-14 3E-18 158.6 10.9 178 374-586 16-200 (323)
133 2p65_A Hypothetical protein PF 99.5 4.4E-14 1.5E-18 147.2 7.3 157 375-553 18-187 (187)
134 2r44_A Uncharacterized protein 99.4 1.1E-13 3.7E-18 159.3 10.0 213 377-640 25-298 (331)
135 1in4_A RUVB, holliday junction 99.4 5.5E-13 1.9E-17 153.8 14.8 213 376-639 22-250 (334)
136 2qby_A CDC6 homolog 1, cell di 99.4 6.3E-13 2.2E-17 155.0 15.3 230 374-639 15-272 (386)
137 2qby_B CDC6 homolog 3, cell di 99.4 1.6E-13 5.4E-18 160.6 10.0 223 374-639 15-270 (384)
138 1sxj_E Activator 1 40 kDa subu 99.4 6.6E-13 2.3E-17 153.8 11.6 191 374-598 9-239 (354)
139 1jr3_A DNA polymerase III subu 99.4 4.9E-13 1.7E-17 155.8 9.8 191 375-600 12-225 (373)
140 1d2n_A N-ethylmaleimide-sensit 99.4 6.7E-14 2.3E-18 156.5 2.2 138 703-846 64-209 (272)
141 1qvr_A CLPB protein; coiled co 99.4 5E-13 1.7E-17 172.7 9.8 205 378-607 557-823 (854)
142 1fnn_A CDC6P, cell division co 99.4 3.3E-12 1.1E-16 149.4 16.0 227 374-639 12-274 (389)
143 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.2E-12 4E-17 157.9 11.8 196 380-607 23-270 (500)
144 3iu6_A Protein polybromo-1; PB 99.4 1.2E-13 4.1E-18 136.5 2.2 82 914-1002 29-110 (147)
145 3syl_A Protein CBBX; photosynt 99.4 1.7E-13 5.7E-18 155.8 3.7 138 703-848 67-219 (309)
146 2bjv_A PSP operon transcriptio 99.4 6E-13 2.1E-17 148.0 7.7 197 376-602 3-239 (265)
147 1sxj_C Activator 1 40 kDa subu 99.3 1.4E-12 4.9E-17 150.6 10.0 178 374-586 20-203 (340)
148 3cmu_A Protein RECA, recombina 99.3 7.6E-12 2.6E-16 168.6 12.9 106 703-810 1427-1563(2050)
149 1ojl_A Transcriptional regulat 99.3 3.1E-12 1.1E-16 145.5 7.2 192 380-601 3-233 (304)
150 3m6a_A ATP-dependent protease 99.2 5.6E-13 1.9E-17 163.4 -0.3 139 703-848 108-268 (543)
151 3f9v_A Minichromosome maintena 99.2 4.3E-12 1.5E-16 156.9 4.2 168 379-566 295-491 (595)
152 3vkg_A Dynein heavy chain, cyt 99.2 5.6E-12 1.9E-16 175.9 5.8 339 411-774 1302-1714(3245)
153 1ofh_A ATP-dependent HSL prote 99.2 3.4E-12 1.2E-16 144.6 2.0 138 703-844 50-213 (310)
154 3hws_A ATP-dependent CLP prote 99.2 1.3E-12 4.6E-17 152.3 -2.2 91 703-794 51-156 (363)
155 3cmu_A Protein RECA, recombina 99.1 3.3E-11 1.1E-15 162.5 8.1 168 634-806 655-865 (2050)
156 3lqh_A Histone-lysine N-methyl 99.1 4.4E-12 1.5E-16 131.6 -0.6 97 897-1007 74-170 (183)
157 1g41_A Heat shock protein HSLU 99.1 4.1E-12 1.4E-16 150.1 -0.9 129 703-842 50-188 (444)
158 3co5_A Putative two-component 99.1 3E-11 1E-15 121.7 4.5 112 380-530 5-116 (143)
159 1a5t_A Delta prime, HOLB; zinc 99.1 1.2E-10 4.2E-15 134.1 10.2 178 383-597 6-206 (334)
160 1jbk_A CLPB protein; beta barr 99.1 1.7E-12 5.8E-17 135.3 -5.8 132 704-843 44-195 (195)
161 3n70_A Transport activator; si 99.1 7E-11 2.4E-15 119.2 6.2 115 380-530 2-116 (145)
162 3pfi_A Holliday junction ATP-d 99.1 9.3E-11 3.2E-15 135.0 7.7 128 704-848 56-199 (338)
163 4akg_A Glutathione S-transfera 99.1 2.4E-10 8.2E-15 159.3 12.7 130 413-561 645-789 (2695)
164 3k1j_A LON protease, ATP-depen 99.1 1.3E-10 4.6E-15 144.3 8.7 220 374-637 36-373 (604)
165 1w5s_A Origin recognition comp 99.0 9.9E-10 3.4E-14 129.5 14.0 216 375-605 18-275 (412)
166 3te6_A Regulatory protein SIR3 99.0 8.1E-11 2.8E-15 133.7 4.4 139 703-848 45-213 (318)
167 1hqc_A RUVB; extended AAA-ATPa 99.0 3.9E-10 1.3E-14 128.7 8.1 128 704-847 39-182 (324)
168 3uk6_A RUVB-like 2; hexameric 99.0 1.1E-10 3.7E-15 136.0 2.7 136 704-848 71-274 (368)
169 4fcw_A Chaperone protein CLPB; 99.0 1.4E-10 4.7E-15 131.7 3.5 138 704-849 48-232 (311)
170 3u61_B DNA polymerase accessor 99.0 2.5E-10 8.5E-15 130.6 5.4 126 705-849 50-181 (324)
171 2gno_A DNA polymerase III, gam 98.9 6.1E-10 2.1E-14 126.4 7.4 147 383-565 1-152 (305)
172 1um8_A ATP-dependent CLP prote 98.9 1.9E-10 6.6E-15 134.6 3.3 89 704-794 73-177 (376)
173 3co5_A Putative two-component 98.9 2E-10 7E-15 115.5 2.1 93 704-814 28-120 (143)
174 2p65_A Hypothetical protein PF 98.9 3.3E-11 1.1E-15 125.2 -4.1 124 704-834 44-187 (187)
175 3pxg_A Negative regulator of g 98.9 2.5E-10 8.6E-15 137.5 2.5 126 704-848 202-340 (468)
176 2z4s_A Chromosomal replication 98.9 1.1E-10 3.7E-15 139.6 -1.4 139 704-848 131-278 (440)
177 1sxj_A Activator 1 95 kDa subu 98.9 7.5E-10 2.6E-14 135.1 5.8 137 703-848 77-224 (516)
178 3pvs_A Replication-associated 98.9 3E-10 1E-14 135.6 2.2 126 704-848 51-180 (447)
179 1l8q_A Chromosomal replication 98.9 1.4E-10 4.9E-15 132.7 -0.6 137 704-848 38-181 (324)
180 3n70_A Transport activator; si 98.9 2.9E-10 9.8E-15 114.7 1.1 93 705-814 26-120 (145)
181 2v1u_A Cell division control p 98.9 8.1E-10 2.8E-14 128.7 5.0 141 704-848 45-216 (387)
182 2chg_A Replication factor C sm 98.8 3.6E-09 1.2E-13 112.7 6.8 131 705-848 40-176 (226)
183 1ojl_A Transcriptional regulat 98.8 1.3E-09 4.4E-14 123.9 3.0 135 704-848 26-188 (304)
184 3bos_A Putative DNA replicatio 98.8 1.3E-09 4.5E-14 118.1 2.0 131 704-848 53-189 (242)
185 2bjv_A PSP operon transcriptio 98.7 2.2E-09 7.6E-14 119.1 2.6 136 704-848 30-192 (265)
186 3ec2_A DNA replication protein 98.7 2.1E-08 7.2E-13 104.4 9.9 101 375-489 6-112 (180)
187 1g8p_A Magnesium-chelatase 38 98.7 1.1E-08 3.8E-13 117.8 7.3 138 704-847 46-233 (350)
188 2r44_A Uncharacterized protein 98.7 1.3E-09 4.3E-14 125.2 -0.9 132 704-847 47-199 (331)
189 2qby_B CDC6 homolog 3, cell di 98.7 3.5E-09 1.2E-13 123.6 2.1 136 704-847 46-211 (384)
190 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 7.8E-09 2.7E-13 124.7 4.8 135 704-844 42-194 (500)
191 1njg_A DNA polymerase III subu 98.7 1.6E-08 5.6E-13 108.8 5.9 133 705-848 47-200 (250)
192 2qen_A Walker-type ATPase; unk 98.6 2.1E-07 7.2E-12 106.6 15.5 193 374-596 7-246 (350)
193 2qby_A CDC6 homolog 1, cell di 98.6 7.1E-09 2.4E-13 120.6 3.1 143 704-848 46-212 (386)
194 3vkg_A Dynein heavy chain, cyt 98.6 1.4E-07 4.7E-12 132.5 14.9 129 414-561 605-749 (3245)
195 2chq_A Replication factor C sm 98.6 1.4E-08 4.7E-13 115.2 3.3 130 705-847 40-175 (319)
196 1sxj_B Activator 1 37 kDa subu 98.5 2.5E-08 8.5E-13 113.3 3.6 127 705-848 44-181 (323)
197 1iqp_A RFCS; clamp loader, ext 98.5 4.1E-08 1.4E-12 111.7 4.5 131 704-847 47-183 (327)
198 1ny5_A Transcriptional regulat 98.5 1E-07 3.4E-12 112.0 7.8 195 378-602 136-369 (387)
199 2kjq_A DNAA-related protein; s 98.5 5.1E-08 1.7E-12 98.8 4.3 106 412-547 35-143 (149)
200 1in4_A RUVB, holliday junction 98.5 5.3E-08 1.8E-12 112.0 5.0 127 704-847 52-194 (334)
201 1sxj_D Activator 1 41 kDa subu 98.5 5E-08 1.7E-12 112.4 4.5 127 704-847 59-206 (353)
202 2vhj_A Ntpase P4, P4; non- hyd 98.5 3.7E-08 1.3E-12 111.0 2.7 122 409-536 119-241 (331)
203 3f9v_A Minichromosome maintena 98.5 4.5E-08 1.5E-12 121.0 3.7 132 705-847 329-491 (595)
204 3dzd_A Transcriptional regulat 98.5 1.4E-07 5E-12 109.8 7.4 192 379-601 129-359 (368)
205 1fnn_A CDC6P, cell division co 98.4 4.6E-08 1.6E-12 114.1 2.7 139 705-848 46-208 (389)
206 3f8t_A Predicted ATPase involv 98.4 1.5E-07 5.1E-12 110.5 6.9 213 381-639 215-483 (506)
207 2w58_A DNAI, primosome compone 98.4 1.1E-07 3.9E-12 100.6 5.1 103 375-490 21-128 (202)
208 1jr3_A DNA polymerase III subu 98.4 1.6E-07 5.5E-12 109.0 6.8 134 705-848 40-193 (373)
209 2krk_A 26S protease regulatory 98.4 7.9E-08 2.7E-12 87.8 2.9 78 548-642 7-84 (86)
210 2fna_A Conserved hypothetical 98.4 1.2E-06 4.2E-11 100.4 13.5 188 374-596 8-250 (357)
211 1a5t_A Delta prime, HOLB; zinc 98.4 1.2E-07 4E-12 109.2 4.5 132 704-845 25-179 (334)
212 3kw6_A 26S protease regulatory 98.4 1.4E-07 4.7E-12 84.6 3.5 74 550-640 1-74 (78)
213 2gno_A DNA polymerase III, gam 98.4 1.7E-07 5.7E-12 106.4 4.5 125 704-846 19-152 (305)
214 1sxj_E Activator 1 40 kDa subu 98.3 3.8E-07 1.3E-11 105.3 6.3 134 705-848 38-208 (354)
215 1sxj_C Activator 1 40 kDa subu 98.3 2.8E-07 9.7E-12 106.1 4.9 126 705-847 48-183 (340)
216 2kjq_A DNAA-related protein; s 98.3 1.5E-07 5.2E-12 95.3 2.2 92 704-815 37-130 (149)
217 2qgz_A Helicase loader, putati 98.2 3E-07 1E-11 104.5 2.8 100 376-489 121-226 (308)
218 3vlf_B 26S protease regulatory 98.2 5.2E-07 1.8E-11 82.8 3.9 76 553-645 2-77 (88)
219 3ec2_A DNA replication protein 98.1 1.7E-07 5.8E-12 97.5 -2.0 102 704-814 39-147 (180)
220 2vhj_A Ntpase P4, P4; non- hyd 98.1 1.4E-06 4.6E-11 98.3 3.2 106 705-816 125-240 (331)
221 2r2a_A Uncharacterized protein 98.0 8.4E-07 2.9E-11 94.2 1.2 132 415-557 7-158 (199)
222 1svm_A Large T antigen; AAA+ f 98.0 2.4E-06 8.1E-11 99.4 4.8 117 409-551 165-284 (377)
223 1ny5_A Transcriptional regulat 98.0 4.9E-07 1.7E-11 106.1 -1.0 134 705-848 162-323 (387)
224 3aji_B S6C, proteasome (prosom 98.0 1.1E-06 3.8E-11 79.6 1.2 75 553-644 2-76 (83)
225 1jr3_D DNA polymerase III, del 98.0 2.2E-05 7.4E-10 90.3 11.4 157 412-598 17-184 (343)
226 1tue_A Replication protein E1; 98.0 3.4E-06 1.2E-10 88.9 4.1 29 410-438 55-83 (212)
227 1w5s_A Origin recognition comp 98.0 1.4E-06 4.8E-11 102.4 1.2 142 704-848 51-230 (412)
228 3dzd_A Transcriptional regulat 98.0 3.1E-06 1E-10 98.6 3.9 134 705-848 154-314 (368)
229 2qgz_A Helicase loader, putati 97.9 5.2E-07 1.8E-11 102.5 -4.0 103 704-816 153-264 (308)
230 2w58_A DNAI, primosome compone 97.9 3.9E-07 1.3E-11 96.5 -4.8 103 704-816 55-165 (202)
231 2dzn_B 26S protease regulatory 97.8 5.5E-06 1.9E-10 74.9 1.2 69 555-640 1-69 (82)
232 3k1j_A LON protease, ATP-depen 97.7 7.2E-06 2.5E-10 101.8 1.0 23 705-727 62-84 (604)
233 1tue_A Replication protein E1; 97.6 3.7E-05 1.3E-09 81.1 5.6 25 704-728 59-83 (212)
234 1ye8_A Protein THEP1, hypothet 97.6 0.00022 7.4E-09 74.2 11.3 24 415-438 2-25 (178)
235 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00014 4.8E-09 77.8 9.3 41 409-449 19-59 (235)
236 3hr8_A Protein RECA; alpha and 97.5 0.00012 4E-09 84.5 7.8 83 409-491 57-153 (356)
237 1u0j_A DNA replication protein 97.5 3.9E-05 1.3E-09 84.5 3.6 27 412-438 103-129 (267)
238 2a5y_B CED-4; apoptosis; HET: 97.5 0.00054 1.8E-08 84.0 13.9 172 382-588 131-330 (549)
239 2zr9_A Protein RECA, recombina 97.5 0.00012 4E-09 84.5 7.5 83 409-491 57-153 (349)
240 1z6t_A APAF-1, apoptotic prote 97.4 0.00076 2.6E-08 83.2 14.6 173 379-588 124-321 (591)
241 1xp8_A RECA protein, recombina 97.4 0.00022 7.7E-09 82.5 8.9 83 409-491 70-166 (366)
242 1n0w_A DNA repair protein RAD5 97.4 0.00035 1.2E-08 75.4 9.8 29 409-437 20-48 (243)
243 2r2a_A Uncharacterized protein 97.4 1.8E-05 6.1E-10 83.9 -1.5 129 705-839 7-159 (199)
244 1u94_A RECA protein, recombina 97.3 0.00033 1.1E-08 80.9 8.4 83 409-491 59-155 (356)
245 3upu_A ATP-dependent DNA helic 97.2 0.00029 9.8E-09 84.4 6.9 54 375-442 20-74 (459)
246 2ehv_A Hypothetical protein PH 97.2 0.00084 2.9E-08 72.7 9.2 28 409-436 26-53 (251)
247 2z43_A DNA repair and recombin 97.1 0.0006 2E-08 77.8 7.9 83 409-491 103-217 (324)
248 2cvh_A DNA repair and recombin 97.1 0.00069 2.4E-08 71.9 7.8 39 409-450 16-54 (220)
249 2fna_A Conserved hypothetical 97.1 0.00029 9.9E-09 80.4 5.0 138 705-847 32-223 (357)
250 3sfz_A APAF-1, apoptotic pepti 97.1 0.0022 7.6E-08 85.8 14.3 173 378-588 123-321 (1249)
251 1v5w_A DMC1, meiotic recombina 97.1 0.00085 2.9E-08 77.2 8.6 83 409-491 118-233 (343)
252 2dr3_A UPF0273 protein PH0284; 97.0 0.002 6.8E-08 69.6 10.7 42 409-450 19-60 (247)
253 1ye8_A Protein THEP1, hypothet 97.0 0.00023 7.7E-09 74.0 2.8 23 705-727 2-24 (178)
254 3io5_A Recombination and repai 97.0 0.0011 3.6E-08 74.6 7.8 83 409-492 25-126 (333)
255 3e1s_A Exodeoxyribonuclease V, 96.9 0.00055 1.9E-08 84.2 5.3 36 414-449 205-240 (574)
256 4a74_A DNA repair and recombin 96.9 0.0014 4.7E-08 70.0 7.9 29 409-437 21-49 (231)
257 2qen_A Walker-type ATPase; unk 96.9 0.00051 1.7E-08 78.3 4.5 81 764-847 128-217 (350)
258 3lda_A DNA repair protein RAD5 96.8 0.0013 4.6E-08 76.9 7.5 28 409-436 174-201 (400)
259 3dm5_A SRP54, signal recogniti 96.8 0.0032 1.1E-07 74.3 10.4 78 412-489 99-194 (443)
260 1g5t_A COB(I)alamin adenosyltr 96.8 0.0055 1.9E-07 64.3 10.9 37 414-450 29-65 (196)
261 2r6a_A DNAB helicase, replicat 96.8 0.0025 8.5E-08 76.1 9.2 42 409-450 199-241 (454)
262 2orw_A Thymidine kinase; TMTK, 96.7 0.0013 4.5E-08 68.6 5.9 34 414-447 4-37 (184)
263 1nlf_A Regulatory protein REPA 96.6 0.0076 2.6E-07 66.9 11.5 31 409-439 26-56 (279)
264 3kl4_A SRP54, signal recogniti 96.6 0.011 3.8E-07 69.7 13.2 78 412-489 96-191 (433)
265 1pzn_A RAD51, DNA repair and r 96.6 0.0042 1.4E-07 71.5 8.9 31 408-438 126-156 (349)
266 2i1q_A DNA repair and recombin 96.5 0.0027 9.1E-08 72.2 7.0 29 409-437 94-122 (322)
267 2iut_A DNA translocase FTSK; n 96.5 0.0046 1.6E-07 74.9 9.2 74 479-562 345-420 (574)
268 2eyu_A Twitching motility prot 96.5 0.00074 2.5E-08 74.6 2.1 76 411-486 23-107 (261)
269 1qhx_A CPT, protein (chloramph 96.5 0.0029 1E-07 64.8 6.5 25 414-438 4-28 (178)
270 3kw6_A 26S protease regulatory 96.5 0.00028 9.5E-09 62.8 -1.2 55 831-898 1-56 (78)
271 1cr0_A DNA primase/helicase; R 96.5 0.0084 2.9E-07 67.0 10.6 40 409-448 31-71 (296)
272 3jvv_A Twitching mobility prot 96.5 0.002 6.7E-08 74.4 5.4 73 413-486 123-205 (356)
273 2cvh_A DNA repair and recombin 96.4 0.00074 2.5E-08 71.7 1.3 21 705-725 22-42 (220)
274 2krk_A 26S protease regulatory 96.4 0.00041 1.4E-08 63.1 -0.7 58 828-898 6-64 (86)
275 1vma_A Cell division protein F 96.4 0.011 3.7E-07 66.7 10.8 77 411-487 102-196 (306)
276 2b8t_A Thymidine kinase; deoxy 96.4 0.0031 1.1E-07 67.8 6.0 75 414-489 13-101 (223)
277 2ius_A DNA translocase FTSK; n 96.4 0.0055 1.9E-07 73.7 8.8 75 479-563 299-375 (512)
278 4g1u_C Hemin import ATP-bindin 96.4 0.0045 1.6E-07 68.4 7.4 28 410-437 34-61 (266)
279 4gp7_A Metallophosphoesterase; 96.4 0.00095 3.3E-08 68.6 1.8 23 410-432 6-28 (171)
280 2q6t_A DNAB replication FORK h 96.4 0.0059 2E-07 72.7 8.9 42 409-450 196-238 (444)
281 2r8r_A Sensor protein; KDPD, P 96.3 0.0038 1.3E-07 66.9 6.2 38 414-451 7-44 (228)
282 3bh0_A DNAB-like replicative h 96.3 0.026 9E-07 63.8 13.5 42 409-450 64-105 (315)
283 3crm_A TRNA delta(2)-isopenten 96.3 0.0014 4.6E-08 74.4 2.3 98 704-808 6-104 (323)
284 2zts_A Putative uncharacterize 96.2 0.011 3.9E-07 63.6 9.3 41 409-449 26-67 (251)
285 1n0w_A DNA repair protein RAD5 96.2 0.00085 2.9E-08 72.4 0.2 22 705-726 26-47 (243)
286 2fz4_A DNA repair protein RAD2 96.2 0.0099 3.4E-07 64.4 8.5 23 415-437 110-132 (237)
287 1svm_A Large T antigen; AAA+ f 96.1 0.0025 8.5E-08 74.0 3.7 91 704-814 170-267 (377)
288 2ewv_A Twitching motility prot 96.1 0.0014 4.7E-08 76.2 1.5 77 410-486 133-218 (372)
289 2gxq_A Heat resistant RNA depe 96.1 0.018 6.3E-07 60.1 10.2 20 413-432 38-57 (207)
290 2i3b_A HCR-ntpase, human cance 96.1 0.0045 1.5E-07 64.8 5.0 24 415-438 3-26 (189)
291 3vaa_A Shikimate kinase, SK; s 96.1 0.0026 8.8E-08 66.9 3.1 28 411-438 23-50 (199)
292 2xau_A PRE-mRNA-splicing facto 96.0 0.017 5.7E-07 73.5 10.7 61 376-436 72-132 (773)
293 3f8t_A Predicted ATPase involv 95.9 0.00066 2.2E-08 80.0 -2.2 96 705-810 241-349 (506)
294 3hr8_A Protein RECA; alpha and 95.9 0.0031 1.1E-07 72.5 3.3 101 705-805 63-193 (356)
295 2px0_A Flagellar biosynthesis 95.9 0.025 8.5E-07 63.5 10.6 40 412-451 104-144 (296)
296 3tui_C Methionine import ATP-b 95.9 0.009 3.1E-07 68.8 6.9 28 410-437 51-78 (366)
297 3trf_A Shikimate kinase, SK; a 95.9 0.0031 1.1E-07 65.1 2.8 26 413-438 5-30 (185)
298 3umf_A Adenylate kinase; rossm 95.9 0.0075 2.6E-07 64.5 5.8 40 411-457 27-66 (217)
299 1kht_A Adenylate kinase; phosp 95.9 0.0046 1.6E-07 63.8 4.0 34 414-447 4-37 (192)
300 3tif_A Uncharacterized ABC tra 95.9 0.0097 3.3E-07 64.5 6.6 29 409-437 27-55 (235)
301 3gfo_A Cobalt import ATP-bindi 95.9 0.012 4.2E-07 65.2 7.6 28 410-437 31-58 (275)
302 1q57_A DNA primase/helicase; d 95.8 0.018 6.2E-07 69.6 9.6 43 409-451 238-281 (503)
303 1gvn_B Zeta; postsegregational 95.8 0.012 4E-07 65.8 7.4 28 411-438 31-58 (287)
304 1nks_A Adenylate kinase; therm 95.8 0.0051 1.8E-07 63.5 4.2 33 415-447 3-35 (194)
305 1vpl_A ABC transporter, ATP-bi 95.8 0.016 5.6E-07 63.6 8.3 28 410-437 38-65 (256)
306 2rhm_A Putative kinase; P-loop 95.8 0.0042 1.4E-07 64.4 3.3 28 411-438 3-30 (193)
307 1qde_A EIF4A, translation init 95.8 0.026 8.9E-07 59.9 9.6 53 375-430 13-68 (224)
308 3rlf_A Maltose/maltodextrin im 95.8 0.007 2.4E-07 70.1 5.3 28 410-437 26-53 (381)
309 3bgw_A DNAB-like replicative h 95.8 0.054 1.8E-06 64.3 13.1 42 409-450 193-234 (444)
310 4a1f_A DNAB helicase, replicat 95.7 0.026 9E-07 64.4 9.8 43 409-451 42-84 (338)
311 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0032 1.1E-07 71.9 2.1 77 411-487 169-250 (330)
312 2i3b_A HCR-ntpase, human cance 95.6 0.0066 2.2E-07 63.6 4.0 23 705-727 3-25 (189)
313 3nh6_A ATP-binding cassette SU 95.6 0.018 6.3E-07 64.8 7.9 29 409-437 76-104 (306)
314 3iij_A Coilin-interacting nucl 95.6 0.0064 2.2E-07 62.5 3.8 26 413-438 11-36 (180)
315 3l9o_A ATP-dependent RNA helic 95.6 0.069 2.4E-06 70.5 14.4 28 414-441 200-227 (1108)
316 1y63_A LMAJ004144AAA protein; 95.6 0.0074 2.5E-07 62.5 4.2 26 413-438 10-36 (184)
317 1xp8_A RECA protein, recombina 95.6 0.0062 2.1E-07 70.4 3.9 73 705-777 76-165 (366)
318 3llm_A ATP-dependent RNA helic 95.5 0.073 2.5E-06 57.2 12.1 22 413-434 76-97 (235)
319 2ze6_A Isopentenyl transferase 95.5 0.0084 2.9E-07 65.7 4.6 31 706-737 4-34 (253)
320 2pl3_A Probable ATP-dependent 95.5 0.034 1.2E-06 59.6 9.4 56 374-432 23-81 (236)
321 3fvq_A Fe(3+) IONS import ATP- 95.5 0.012 4E-07 67.8 5.8 28 410-437 27-54 (359)
322 2zr9_A Protein RECA, recombina 95.5 0.0035 1.2E-07 72.1 1.5 73 705-777 63-152 (349)
323 1via_A Shikimate kinase; struc 95.5 0.0067 2.3E-07 62.1 3.4 24 415-438 6-29 (175)
324 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.021 7.1E-07 62.7 7.4 29 413-441 4-32 (260)
325 2pcj_A ABC transporter, lipopr 95.4 0.024 8.1E-07 60.9 7.7 28 410-437 27-54 (224)
326 2orw_A Thymidine kinase; TMTK, 95.4 0.0044 1.5E-07 64.6 1.8 22 705-726 5-26 (184)
327 3lw7_A Adenylate kinase relate 95.4 0.017 6E-07 58.2 6.3 23 415-438 3-25 (179)
328 2p5t_B PEZT; postsegregational 95.4 0.01 3.5E-07 64.9 4.9 28 411-438 30-57 (253)
329 2ixe_A Antigen peptide transpo 95.4 0.03 1E-06 62.0 8.6 29 409-437 41-69 (271)
330 1kag_A SKI, shikimate kinase I 95.4 0.0074 2.5E-07 61.4 3.4 25 414-438 5-29 (173)
331 1z47_A CYSA, putative ABC-tran 95.4 0.012 4E-07 67.7 5.4 28 410-437 38-65 (355)
332 2yhs_A FTSY, cell division pro 95.4 0.048 1.6E-06 65.0 10.7 38 410-447 290-327 (503)
333 3uie_A Adenylyl-sulfate kinase 95.4 0.026 8.9E-07 59.1 7.7 32 411-442 23-54 (200)
334 3vlf_B 26S protease regulatory 95.4 0.003 1E-07 57.6 0.3 52 834-898 2-54 (88)
335 1w36_D RECD, exodeoxyribonucle 95.4 0.026 8.9E-07 69.8 8.8 25 414-438 165-189 (608)
336 1vec_A ATP-dependent RNA helic 95.3 0.046 1.6E-06 57.1 9.4 19 413-431 40-58 (206)
337 2ehv_A Hypothetical protein PH 95.3 0.0051 1.8E-07 66.5 2.0 20 705-724 32-51 (251)
338 3kb2_A SPBC2 prophage-derived 95.3 0.007 2.4E-07 61.3 2.8 24 415-438 3-26 (173)
339 3bor_A Human initiation factor 95.3 0.023 7.7E-07 61.3 7.0 55 375-432 29-86 (237)
340 2yvu_A Probable adenylyl-sulfa 95.3 0.013 4.3E-07 60.7 4.7 36 412-447 12-47 (186)
341 1hv8_A Putative ATP-dependent 95.3 0.023 7.9E-07 64.6 7.3 60 375-437 5-68 (367)
342 3dl0_A Adenylate kinase; phosp 95.2 0.017 5.7E-07 61.3 5.7 24 415-438 2-25 (216)
343 3fb4_A Adenylate kinase; psych 95.2 0.018 6.2E-07 60.9 5.9 24 415-438 2-25 (216)
344 3b6e_A Interferon-induced heli 95.2 0.026 8.9E-07 59.2 7.0 24 414-437 49-72 (216)
345 2yyz_A Sugar ABC transporter, 95.2 0.014 4.9E-07 67.1 5.3 28 410-437 26-53 (359)
346 3trf_A Shikimate kinase, SK; a 95.2 0.0032 1.1E-07 65.0 -0.2 31 704-735 6-36 (185)
347 2it1_A 362AA long hypothetical 95.2 0.014 4.7E-07 67.4 5.1 28 410-437 26-53 (362)
348 3a8t_A Adenylate isopentenyltr 95.2 0.0097 3.3E-07 67.6 3.7 43 705-748 42-84 (339)
349 3sr0_A Adenylate kinase; phosp 95.2 0.011 3.7E-07 62.8 3.8 35 415-456 2-36 (206)
350 1zu4_A FTSY; GTPase, signal re 95.2 0.052 1.8E-06 61.5 9.7 41 411-451 103-143 (320)
351 1nn5_A Similar to deoxythymidy 95.2 0.014 4.6E-07 61.6 4.6 34 412-445 8-41 (215)
352 3crm_A TRNA delta(2)-isopenten 95.1 0.024 8.3E-07 64.1 6.8 34 414-452 6-39 (323)
353 3d31_A Sulfate/molybdate ABC t 95.1 0.018 6.3E-07 66.0 5.9 28 410-437 23-50 (348)
354 2b8t_A Thymidine kinase; deoxy 95.1 0.022 7.5E-07 61.2 6.1 22 706-727 15-36 (223)
355 2olj_A Amino acid ABC transpor 95.1 0.023 8E-07 62.6 6.5 28 410-437 47-74 (263)
356 2plr_A DTMP kinase, probable t 95.1 0.019 6.6E-07 60.1 5.7 28 414-441 5-32 (213)
357 2iyv_A Shikimate kinase, SK; t 95.1 0.009 3.1E-07 61.6 3.0 24 415-438 4-27 (184)
358 2dzn_B 26S protease regulatory 95.1 0.0092 3.2E-07 53.5 2.6 50 836-898 1-51 (82)
359 2wwf_A Thymidilate kinase, put 95.1 0.016 5.5E-07 61.0 4.9 33 413-445 10-42 (212)
360 3ber_A Probable ATP-dependent 95.1 0.04 1.4E-06 60.0 8.2 55 374-431 41-98 (249)
361 2c95_A Adenylate kinase 1; tra 95.1 0.01 3.4E-07 61.6 3.2 27 412-438 8-34 (196)
362 1zuh_A Shikimate kinase; alpha 95.0 0.0095 3.2E-07 60.5 2.9 26 413-438 7-32 (168)
363 1ls1_A Signal recognition part 95.0 0.077 2.6E-06 59.4 10.5 76 412-487 97-190 (295)
364 2iut_A DNA translocase FTSK; n 95.0 0.017 5.7E-07 70.1 5.3 75 765-842 344-419 (574)
365 1vt4_I APAF-1 related killer D 95.0 0.056 1.9E-06 69.6 10.2 43 382-436 131-173 (1221)
366 1tf7_A KAIC; homohexamer, hexa 95.0 0.039 1.3E-06 67.0 8.7 82 409-490 277-384 (525)
367 1zp6_A Hypothetical protein AT 95.0 0.0098 3.4E-07 61.6 2.8 27 411-437 7-33 (191)
368 4a74_A DNA repair and recombin 95.0 0.0055 1.9E-07 65.3 0.9 22 705-726 27-48 (231)
369 1ak2_A Adenylate kinase isoenz 94.9 0.03 1E-06 60.3 6.7 26 413-438 16-41 (233)
370 1q0u_A Bstdead; DEAD protein, 94.9 0.025 8.7E-07 60.0 6.0 54 376-432 4-60 (219)
371 2qi9_C Vitamin B12 import ATP- 94.9 0.037 1.3E-06 60.4 7.4 28 410-437 23-50 (249)
372 1t6n_A Probable ATP-dependent 94.9 0.12 4.2E-06 54.5 11.3 59 375-436 13-74 (220)
373 1ly1_A Polynucleotide kinase; 94.9 0.011 3.7E-07 60.4 2.9 22 414-435 3-24 (181)
374 2ff7_A Alpha-hemolysin translo 94.9 0.051 1.8E-06 59.2 8.4 28 410-437 32-59 (247)
375 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.0063 2.2E-07 64.8 1.1 22 705-726 25-46 (235)
376 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.6E-07 59.4 3.5 24 415-438 4-27 (173)
377 2z43_A DNA repair and recombin 94.8 0.0059 2E-07 69.5 0.8 22 705-726 109-130 (324)
378 3eph_A TRNA isopentenyltransfe 94.8 0.016 5.6E-07 67.2 4.4 98 705-809 4-102 (409)
379 3foz_A TRNA delta(2)-isopenten 94.8 0.012 4.1E-07 66.0 3.2 44 704-748 11-54 (316)
380 3thx_B DNA mismatch repair pro 94.8 0.042 1.4E-06 70.6 8.5 26 411-436 671-696 (918)
381 3vaa_A Shikimate kinase, SK; s 94.8 0.0046 1.6E-07 64.9 -0.2 31 704-735 26-56 (199)
382 3cm0_A Adenylate kinase; ATP-b 94.8 0.011 3.8E-07 60.8 2.7 25 414-438 5-29 (186)
383 1g29_1 MALK, maltose transport 94.8 0.028 9.6E-07 65.0 6.3 28 410-437 26-53 (372)
384 1u0j_A DNA replication protein 94.8 0.0063 2.1E-07 66.9 0.7 24 704-727 105-128 (267)
385 3t61_A Gluconokinase; PSI-biol 94.8 0.013 4.5E-07 61.4 3.2 26 413-438 18-43 (202)
386 1tf7_A KAIC; homohexamer, hexa 94.8 0.09 3.1E-06 63.8 11.0 29 409-437 35-65 (525)
387 2ze6_A Isopentenyl transferase 94.8 0.013 4.4E-07 64.2 3.1 24 415-438 3-26 (253)
388 2xxa_A Signal recognition part 94.7 0.12 4.1E-06 61.0 11.7 76 411-486 98-192 (433)
389 2cdn_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 60.9 3.5 26 413-438 20-45 (201)
390 1aky_A Adenylate kinase; ATP:A 94.7 0.014 4.8E-07 62.1 3.4 26 413-438 4-29 (220)
391 1zak_A Adenylate kinase; ATP:A 94.7 0.013 4.6E-07 62.4 3.2 27 412-438 4-30 (222)
392 1qhx_A CPT, protein (chloramph 94.7 0.0058 2E-07 62.5 0.3 30 705-735 5-34 (178)
393 2bbw_A Adenylate kinase 4, AK4 94.7 0.014 4.8E-07 63.4 3.3 26 413-438 27-52 (246)
394 1zd8_A GTP:AMP phosphotransfer 94.7 0.012 4.2E-07 63.0 2.8 27 412-438 6-32 (227)
395 1v43_A Sugar-binding transport 94.7 0.014 4.7E-07 67.6 3.3 28 410-437 34-61 (372)
396 1j8m_F SRP54, signal recogniti 94.7 0.075 2.6E-06 59.6 9.3 38 413-450 98-135 (297)
397 3thx_A DNA mismatch repair pro 94.7 0.07 2.4E-06 68.8 10.1 23 413-435 662-684 (934)
398 1tev_A UMP-CMP kinase; ploop, 94.7 0.014 4.7E-07 60.4 3.0 26 413-438 3-28 (196)
399 4gp7_A Metallophosphoesterase; 94.7 0.012 4.1E-07 60.3 2.5 18 705-722 11-28 (171)
400 3exa_A TRNA delta(2)-isopenten 94.6 0.015 5E-07 65.4 3.3 43 705-748 5-47 (322)
401 2j37_W Signal recognition part 94.6 0.077 2.6E-06 63.8 9.7 39 412-450 100-138 (504)
402 3p32_A Probable GTPase RV1496/ 94.6 0.072 2.5E-06 61.3 9.2 38 413-450 79-116 (355)
403 3kb2_A SPBC2 prophage-derived 94.6 0.0073 2.5E-07 61.2 0.8 31 705-736 3-33 (173)
404 3eiq_A Eukaryotic initiation f 94.6 0.048 1.6E-06 63.4 7.8 21 413-433 77-97 (414)
405 3iij_A Coilin-interacting nucl 94.6 0.0057 1.9E-07 62.9 -0.3 31 704-735 12-42 (180)
406 3e70_C DPA, signal recognition 94.6 0.087 3E-06 59.9 9.5 40 411-450 127-166 (328)
407 4eun_A Thermoresistant glucoki 94.5 0.017 5.9E-07 60.5 3.4 27 412-438 28-54 (200)
408 2vli_A Antibiotic resistance p 94.5 0.013 4.3E-07 60.2 2.3 26 413-438 5-30 (183)
409 2iyv_A Shikimate kinase, SK; t 94.5 0.0057 1.9E-07 63.1 -0.4 32 704-736 3-34 (184)
410 2v3c_C SRP54, signal recogniti 94.5 0.071 2.4E-06 62.9 9.0 39 412-450 98-136 (432)
411 1v5w_A DMC1, meiotic recombina 94.5 0.014 4.8E-07 66.9 2.9 22 705-726 124-145 (343)
412 1u94_A RECA protein, recombina 94.5 0.011 3.8E-07 68.1 2.0 74 705-778 65-155 (356)
413 1oxx_K GLCV, glucose, ABC tran 94.5 0.026 8.9E-07 64.9 5.1 28 410-437 28-55 (353)
414 2bwj_A Adenylate kinase 5; pho 94.5 0.016 5.4E-07 60.2 3.1 26 413-438 12-37 (199)
415 3be4_A Adenylate kinase; malar 94.5 0.016 5.5E-07 61.6 3.2 25 414-438 6-30 (217)
416 1knq_A Gluconate kinase; ALFA/ 94.5 0.017 6E-07 58.8 3.2 25 414-438 9-33 (175)
417 3tlx_A Adenylate kinase 2; str 94.5 0.019 6.3E-07 62.5 3.6 28 411-438 27-54 (243)
418 2qor_A Guanylate kinase; phosp 94.5 0.018 6.2E-07 60.5 3.4 28 411-438 10-37 (204)
419 1p9r_A General secretion pathw 94.4 0.033 1.1E-06 65.4 5.9 74 414-487 168-246 (418)
420 1y63_A LMAJ004144AAA protein; 94.4 0.0061 2.1E-07 63.2 -0.5 33 704-736 11-43 (184)
421 1qf9_A UMP/CMP kinase, protein 94.4 0.018 6.1E-07 59.3 3.1 26 413-438 6-31 (194)
422 3kl4_A SRP54, signal recogniti 94.4 0.018 6.1E-07 67.9 3.4 106 704-809 98-224 (433)
423 3gmt_A Adenylate kinase; ssgci 94.4 0.038 1.3E-06 59.5 5.6 24 415-438 10-33 (230)
424 1kgd_A CASK, peripheral plasma 94.4 0.02 6.8E-07 59.0 3.3 25 413-437 5-29 (180)
425 3dm5_A SRP54, signal recogniti 94.4 0.025 8.4E-07 66.8 4.5 134 704-842 101-258 (443)
426 3gd7_A Fusion complex of cysti 94.3 0.065 2.2E-06 62.4 7.9 29 409-437 43-71 (390)
427 1ukz_A Uridylate kinase; trans 94.3 0.02 6.7E-07 60.0 3.3 26 413-438 15-40 (203)
428 1m7g_A Adenylylsulfate kinase; 94.2 0.029 9.9E-07 59.3 4.4 31 411-441 23-54 (211)
429 2j41_A Guanylate kinase; GMP, 94.2 0.02 7E-07 59.8 3.1 27 411-437 4-30 (207)
430 1via_A Shikimate kinase; struc 94.2 0.0065 2.2E-07 62.2 -0.8 29 705-734 6-34 (175)
431 3lda_A DNA repair protein RAD5 94.2 0.0084 2.9E-07 70.2 0.1 20 705-724 180-199 (400)
432 3jvv_A Twitching mobility prot 94.2 0.012 4E-07 67.9 1.3 95 705-810 125-231 (356)
433 3c8u_A Fructokinase; YP_612366 94.2 0.034 1.2E-06 58.7 4.8 41 411-451 20-60 (208)
434 2i1q_A DNA repair and recombin 94.2 0.011 3.7E-07 67.1 0.8 22 705-726 100-121 (322)
435 2ffh_A Protein (FFH); SRP54, s 94.1 0.25 8.5E-06 58.1 12.4 40 412-451 97-136 (425)
436 2jaq_A Deoxyguanosine kinase; 94.1 0.021 7.2E-07 59.5 2.9 24 415-438 2-25 (205)
437 2z0h_A DTMP kinase, thymidylat 94.1 0.05 1.7E-06 56.3 5.8 29 416-444 3-31 (197)
438 2ga8_A Hypothetical 39.9 kDa p 94.1 0.037 1.3E-06 63.3 5.0 25 414-438 25-49 (359)
439 3fe2_A Probable ATP-dependent 94.1 0.14 4.9E-06 55.1 9.6 56 374-432 27-85 (242)
440 3fmo_B ATP-dependent RNA helic 94.1 0.079 2.7E-06 59.4 7.7 53 375-430 91-148 (300)
441 1s2m_A Putative ATP-dependent 94.1 0.099 3.4E-06 60.4 8.9 57 375-434 20-79 (400)
442 2pjz_A Hypothetical protein ST 94.1 0.12 4.2E-06 56.8 9.1 28 409-437 27-54 (263)
443 2pt5_A Shikimate kinase, SK; a 94.1 0.023 8E-07 57.3 3.0 24 415-438 2-25 (168)
444 2v54_A DTMP kinase, thymidylat 94.0 0.025 8.6E-07 59.0 3.3 25 413-437 4-28 (204)
445 2qm8_A GTPase/ATPase; G protei 94.0 0.11 3.7E-06 59.3 8.9 41 411-451 53-93 (337)
446 2cdn_A Adenylate kinase; phosp 94.0 0.0094 3.2E-07 62.5 -0.1 30 705-735 22-51 (201)
447 3b9q_A Chloroplast SRP recepto 94.0 0.059 2E-06 60.6 6.5 38 410-447 97-134 (302)
448 3tau_A Guanylate kinase, GMP k 94.0 0.025 8.7E-07 59.7 3.2 27 412-438 7-33 (208)
449 2pbr_A DTMP kinase, thymidylat 94.0 0.029 9.9E-07 57.9 3.6 27 415-441 2-28 (195)
450 3lw7_A Adenylate kinase relate 94.0 0.0084 2.9E-07 60.6 -0.5 29 705-735 3-31 (179)
451 2rhm_A Putative kinase; P-loop 93.9 0.0087 3E-07 61.9 -0.4 30 704-734 6-35 (193)
452 1lvg_A Guanylate kinase, GMP k 93.9 0.026 8.8E-07 59.3 3.2 26 412-437 3-28 (198)
453 3e1s_A Exodeoxyribonuclease V, 93.9 0.023 7.8E-07 69.7 3.1 96 705-808 206-316 (574)
454 2ius_A DNA translocase FTSK; n 93.9 0.068 2.3E-06 64.2 7.1 75 766-843 299-374 (512)
455 3iuy_A Probable ATP-dependent 93.9 0.14 4.8E-06 54.4 8.9 56 374-432 17-76 (228)
456 3tr0_A Guanylate kinase, GMP k 93.9 0.028 9.6E-07 58.7 3.3 26 412-437 6-31 (205)
457 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.021 7.1E-07 65.1 2.4 71 704-775 172-251 (330)
458 1pzn_A RAD51, DNA repair and r 93.9 0.014 4.7E-07 67.2 0.9 23 705-727 133-155 (349)
459 3pey_A ATP-dependent RNA helic 93.9 0.13 4.5E-06 59.0 9.3 22 413-434 44-65 (395)
460 1cr0_A DNA primase/helicase; R 93.8 0.019 6.4E-07 64.2 2.0 23 705-727 37-59 (296)
461 3a8t_A Adenylate isopentenyltr 93.8 0.074 2.5E-06 60.4 6.9 25 414-438 41-65 (339)
462 2j0s_A ATP-dependent RNA helic 93.8 0.11 3.9E-06 60.2 8.8 57 375-434 36-95 (410)
463 2pez_A Bifunctional 3'-phospho 93.8 0.043 1.5E-06 56.2 4.6 27 413-439 5-31 (179)
464 2og2_A Putative signal recogni 93.8 0.064 2.2E-06 61.7 6.4 38 410-447 154-191 (359)
465 1ex7_A Guanylate kinase; subst 93.8 0.028 9.7E-07 58.5 3.1 24 414-437 2-25 (186)
466 1zuh_A Shikimate kinase; alpha 93.8 0.0097 3.3E-07 60.4 -0.5 31 705-736 9-39 (168)
467 3aji_B S6C, proteasome (prosom 93.8 0.0086 2.9E-07 53.7 -0.8 52 834-898 2-54 (83)
468 1rz3_A Hypothetical protein rb 93.7 0.07 2.4E-06 55.9 6.1 36 412-447 21-56 (201)
469 1cke_A CK, MSSA, protein (cyti 93.7 0.033 1.1E-06 59.2 3.5 25 414-438 6-30 (227)
470 2vli_A Antibiotic resistance p 93.7 0.018 6.1E-07 59.1 1.4 29 704-733 6-34 (183)
471 2va8_A SSO2462, SKI2-type heli 93.7 0.18 6.2E-06 63.4 10.9 59 375-434 7-67 (715)
472 1kag_A SKI, shikimate kinase I 93.7 0.014 4.8E-07 59.3 0.5 27 705-732 6-32 (173)
473 1xx6_A Thymidine kinase; NESG, 93.6 0.048 1.6E-06 57.1 4.5 35 414-448 9-43 (191)
474 3umf_A Adenylate kinase; rossm 93.6 0.015 5.2E-07 62.2 0.7 35 704-741 30-64 (217)
475 2oxc_A Probable ATP-dependent 93.6 0.067 2.3E-06 57.2 5.8 55 374-431 22-79 (230)
476 4f4c_A Multidrug resistance pr 93.6 0.12 4.2E-06 69.5 9.6 28 410-437 441-468 (1321)
477 1np6_A Molybdopterin-guanine d 93.6 0.061 2.1E-06 55.4 5.2 40 413-452 6-45 (174)
478 3ice_A Transcription terminati 93.6 0.085 2.9E-06 60.8 6.8 30 411-440 172-201 (422)
479 1fuu_A Yeast initiation factor 93.6 0.11 3.6E-06 59.9 7.8 55 374-431 19-76 (394)
480 3dl0_A Adenylate kinase; phosp 93.6 0.012 4.1E-07 62.4 -0.3 30 705-735 2-31 (216)
481 2c95_A Adenylate kinase 1; tra 93.5 0.01 3.6E-07 61.5 -0.7 31 704-735 10-40 (196)
482 3ly5_A ATP-dependent RNA helic 93.5 0.1 3.6E-06 57.1 7.3 19 414-432 92-110 (262)
483 1aky_A Adenylate kinase; ATP:A 93.5 0.012 4E-07 62.8 -0.4 31 704-735 5-35 (220)
484 1tev_A UMP-CMP kinase; ploop, 93.5 0.011 3.8E-07 61.1 -0.6 31 704-735 4-34 (196)
485 2grj_A Dephospho-COA kinase; T 93.5 0.064 2.2E-06 56.1 5.2 24 415-438 14-37 (192)
486 3cm0_A Adenylate kinase; ATP-b 93.5 0.011 3.8E-07 60.9 -0.6 30 705-735 6-35 (186)
487 1e4v_A Adenylate kinase; trans 93.5 0.03 1E-06 59.3 2.7 24 415-438 2-25 (214)
488 2xb4_A Adenylate kinase; ATP-b 93.5 0.033 1.1E-06 59.6 3.0 24 415-438 2-25 (223)
489 1e6c_A Shikimate kinase; phosp 93.5 0.011 3.7E-07 60.1 -0.7 29 705-734 4-32 (173)
490 1sky_E F1-ATPase, F1-ATP synth 93.5 0.099 3.4E-06 61.9 7.3 26 414-439 152-177 (473)
491 3t61_A Gluconokinase; PSI-biol 93.5 0.015 5E-07 61.0 0.2 30 704-734 19-48 (202)
492 2dr3_A UPF0273 protein PH0284; 93.4 0.032 1.1E-06 59.9 2.9 22 705-726 25-46 (247)
493 1zd8_A GTP:AMP phosphotransfer 93.4 0.012 4.1E-07 63.1 -0.5 31 704-735 8-38 (227)
494 3a00_A Guanylate kinase, GMP k 93.4 0.035 1.2E-06 57.5 3.0 25 414-438 2-26 (186)
495 3nwj_A ATSK2; P loop, shikimat 93.4 0.029 1E-06 61.3 2.5 26 413-438 48-73 (250)
496 4eaq_A DTMP kinase, thymidylat 93.4 0.071 2.4E-06 57.3 5.5 32 412-444 25-56 (229)
497 1rif_A DAR protein, DNA helica 93.3 0.21 7.1E-06 55.1 9.5 45 415-459 130-174 (282)
498 3qf4_A ABC transporter, ATP-bi 93.3 0.13 4.5E-06 63.3 8.5 29 409-437 365-393 (587)
499 2bwj_A Adenylate kinase 5; pho 93.3 0.011 3.8E-07 61.4 -0.9 31 704-735 13-43 (199)
500 2bdt_A BH3686; alpha-beta prot 93.3 0.034 1.2E-06 57.5 2.8 23 415-437 4-26 (189)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-73 Score=714.89 Aligned_cols=490 Identities=33% Similarity=0.525 Sum_probs=413.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|+||+|+++++++|+++|.+||.+|++|..+|+.+|+|||||||||||||+||++||++++ ++|+.+++.+
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEEHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEEhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999996 7899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
++++|+|+++..++.+|..|...+||||||||||.|++++.........+++.+|+.+|+++...++|+||++||+++.|
T Consensus 274 l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred hhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999999987777777789999999999999988999999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceec
Q 000974 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~ 613 (1205)
|++|+|+|||++.|+|+.|+.++|.+||+.++.++....+.+ +..||..|.||+|+||.++|++|++.|+++....+..
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd-l~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999887665554 4789999999999999999999999999987554433
Q ss_pred cCCceEE-eccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhc
Q 000974 614 SDDKFLI-DVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (1205)
Q Consensus 614 ~~~~~~~-d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~ 692 (1205)
....... ......|+.+||..|+..+.|+..+......+.+.|.+++++.+..+.+.+.+. -++.++..|.++++
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~---~p~~~p~~f~~~g~- 508 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGM- 508 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTT---TTTTCSGGGSSSCC-
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHH---hhhhCHHHHHhcCC-
Confidence 3222111 123457999999999999999999999999999999999999888887777642 24556666665542
Q ss_pred ccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeecc
Q 000974 693 SHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (1205)
Q Consensus 693 ~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDE 772 (1205)
.++.|+||+||||||||++|+|||+++ +.+|+.++.++++++| +|++|++++++|..|+..+||||||||
T Consensus 509 --------~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~~l~s~~-vGese~~vr~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 509 --------TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLTMW-FGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp --------CCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHHHHHTTT-CSSCHHHHHHHHHHHHTTCSEEEECSC
T ss_pred --------CCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccchhhccc-cchHHHHHHHHHHHHHHcCCceeechh
Confidence 235789999999999999999999999 8999999999999998 899999999999999999999999999
Q ss_pred chhhHHh----------HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhh
Q 000974 773 FNLWWEN----------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSL 840 (1205)
Q Consensus 773 id~l~~~----------~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~ 840 (1205)
||+|+.. ...+++++|+++|+++....+|+||||||+| +.||+ +.+|++| .+|+|++|+.++|.+
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p-~~lD~--AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIIDP--AILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS-SSSCH--HHHSTTTSCCEEEC-----CHHHH
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc-hhCCH--hHcCCCcceEEEEECCcCHHHHHH
Confidence 9999843 2357899999999999999999999999998 99999 7777554 889999999999999
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHHH
Q 000974 841 FLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alrel 899 (1205)
||+.++++. +...++++..|+.. +.||||++|+++| +|.+.++|+.
T Consensus 656 il~~~l~~~----------~~~~~~dl~~la~~---t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 656 ILKANLRKS----------PVAKDVDLEFLAKM---TNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp TTTTTSSCC------------CCC-------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC----------CCCCCCCHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999988642 33566788888877 8899999999999 8989888773
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=6.1e-52 Score=529.54 Aligned_cols=489 Identities=32% Similarity=0.524 Sum_probs=403.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.+++.|++++.+|+.+|++|..+++.++.+|||+||||||||+||++||..++ ..|+.+++.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~~ 273 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEchH
Confidence 57899999999999999999999999999999999999999999999999999999999999884 6788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
+.+.+.|+.+..++.+|..+....|+||||||||.+++.+..........++.+|+.+|++......++||++||.++.+
T Consensus 274 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999999998876666666788999999999998888899999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceec
Q 000974 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~ 613 (1205)
++++++++||+..+.++.|+.++|.+||+.++..+......+ +..++..+.||+++++..+|.+|+..++++....+..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~-l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC-THHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch-hHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 999999999999999999999999999999998876654433 4789999999999999999999999998876543221
Q ss_pred cCCce-EEeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhc
Q 000974 614 SDDKF-LIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCML 692 (1205)
Q Consensus 614 ~~~~~-~~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~ 692 (1205)
..... ........++..+|..++....+...+......+.+.|.++.++....+.+.+.+.. ++.....+..++
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~---~~~~~~~~~~~~-- 507 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFG-- 507 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTS---SSSSCTTTTCCC--
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHh---hhhchHHHHhcC--
Confidence 11000 001123457889999999999998888888888899999998877776666665321 222233333222
Q ss_pred ccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeecc
Q 000974 693 SHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (1205)
Q Consensus 693 ~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDE 772 (1205)
+..+.++||+||||||||+||++||+++ +.+|+.++++.+++.| .|+++..++.+|..|+...||||||||
T Consensus 508 -------~~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~vl~iDE 578 (806)
T 1ypw_A 508 -------MTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLTMW-FGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp -------CCCCCCCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCCSSSTTCC-TTTSSHHHHHHHHHHHHHCSBCCCCSS
T ss_pred -------CCCCceeEEECCCCCCHHHHHHHHHHHh-CCCEEEEechHhhhhh-cCccHHHHHHHHHHHHhcCCeEEEEEC
Confidence 2234679999999999999999999999 8999999999999887 799999999999999999999999999
Q ss_pred chhhHH----------hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCcccc--CCCceeeecCCCccchhh
Q 000974 773 FNLWWE----------NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVF--PLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 773 id~l~~----------~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f--~~r~ii~~~~P~~~eR~~ 840 (1205)
||.++. ....++++.|+..|+++....+|+||+|||++ +.||+ +.++ ++..+++|++|+.++|..
T Consensus 579 id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~-~~ld~--allrpgRf~~~i~~~~p~~~~r~~ 655 (806)
T 1ypw_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIIDP--AILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC-GGGSC--TTSSGGGTTSCCCCCCCCCSHHHH
T ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc-ccCCH--HHhCccccCceeecCCCCHHHHHH
Confidence 999862 24566777777777777777899999999998 88999 5565 333788899999999999
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 841 FLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 841 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
||+.++... ....+.++..|+.. +.|+++++|.++| ++...++++
T Consensus 656 Il~~~l~~~----------~~~~~~~l~~la~~---t~g~sgadi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 656 ILKANLRKS----------PVAKDVDLEFLAKM---TNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp HTTTTTSCC--------------CCCCSCSCGG---GSSSCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccC----------CCCcccCHHHHHHh---ccccCHHHHHHHHHHHHHHHHHH
Confidence 999888531 23456777777766 7899999999999 777777655
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-43 Score=405.66 Aligned_cols=251 Identities=39% Similarity=0.656 Sum_probs=230.0
Q ss_pred cccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 371 ~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.-.|.++|+||+|++++|++|+++|.+|+.+|++|..+|+.+|+|||||||||||||++|+|||++++ ++|+.++
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~ 214 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVS 214 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEE
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEE
Confidence 33489999999999999999999999999999999999999999999999999999999999999996 8899999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000974 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 451 ~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
+++++++|+|+++..++.+|..|+..+||||||||||+|++.+... ++.....++.+||..|+++....+|+||+||
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 9999999999999999999999999999999999999999887543 2334567899999999999999999999999
Q ss_pred cccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHh
Q 000974 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 528 n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
|+|+.||+||+|||||+..|+|++|+.++|.+||+.|++++....+.+ +..||..|.||+|+||.++|++|++.|+++.
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd-l~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999887665545 4899999999999999999999999999864
Q ss_pred CCceeccCCceEEeccceeeeehhhhhhhcccCccc
Q 000974 608 YPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 608 ~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~ 643 (1205)
. ..|+.+||..|+.++.+..
T Consensus 374 ~----------------~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 374 R----------------IHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp C----------------SBCCHHHHHHHHHHHHHHH
T ss_pred C----------------CCcCHHHHHHHHHHHhCcc
Confidence 2 2489999999998876543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-42 Score=399.28 Aligned_cols=252 Identities=37% Similarity=0.628 Sum_probs=230.0
Q ss_pred ccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000974 370 LQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 370 ~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
+.-.|.++|+||+|++++|++|+++|.+|+.+|++|..+|+.+++|||||||||||||++|+|||++++ ++|+.+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v 247 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRI 247 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEE
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEE
Confidence 444589999999999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000974 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
++++++++|+|+++..++.+|..|+..+||||||||||++++.|...+ +.....++.+||..|+++...++|+||+|
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999875432 23456788999999999999999999999
Q ss_pred ccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHH
Q 000974 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 527 tn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr 606 (1205)
||+++.||+||+|||||+..|+|++|+.++|.+||+.|+.++.+..+.+ ++.||..|.||||+||.++|++|++.|+++
T Consensus 328 TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd-l~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 328 TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN-LETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999887655444 488999999999999999999999999986
Q ss_pred hCCceeccCCceEEeccceeeeehhhhhhhcccCccc
Q 000974 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 607 ~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~ 643 (1205)
.. ..|+.+||..|+.++.+..
T Consensus 407 ~~----------------~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 407 RR----------------MQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp TC----------------SCBCHHHHHHHHHHHHHHH
T ss_pred CC----------------CccCHHHHHHHHHHHhCCC
Confidence 43 2488999999998876543
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=399.45 Aligned_cols=253 Identities=35% Similarity=0.603 Sum_probs=231.6
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
-.|.++|+||+|++++|+.|++.|.+|+.+|++|..+|+++++|||||||||||||++|+|||++++ ++|+.+++
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~ 248 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAA 248 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEeh
Confidence 4488999999999999999999999999999999999999999999999999999999999999996 78999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhh---HHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000974 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQE---QIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~---~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++++++|+|+++..++.+|..|...+||||||||||.|++.|..... .....++.+||..|+++....+|+||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998854432 345678889999999999889999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+|+.||+||+|||||+..|+|++|+.++|.+||+.+++++....+.+ ++.||..|.||+|+||.++|++|++.|+++..
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd-l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN-WQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC-HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999877655444 48899999999999999999999999998743
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCcccccc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRG 646 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~ 646 (1205)
..|+.+||..|+..+.|...+.
T Consensus 408 ----------------~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 408 ----------------SSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ----------------SSBCHHHHHHHHHSCSSSCCCC
T ss_pred ----------------CCcCHHHHHHHHHHHhCCCCcC
Confidence 2488999999999998875544
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-41 Score=394.31 Aligned_cols=249 Identities=37% Similarity=0.663 Sum_probs=227.7
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
-.|.++|+||+|++++|++|+++|.+|+.+|++|..+|+.+++|||||||||||||+||+|||++++ ++|+.+++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~ 276 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIG 276 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEh
Confidence 3478999999999999999999999999999999999999999999999999999999999999996 78999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000974 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++++++|+|+++..++.+|..|+..+||||||||+|.+++.|...+ ......++.+||..|+++....+|+||+|||
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 9999999999999999999999999999999999999998875432 2345678889999999999999999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+++.||+||+|||||++.|+|++|+.++|.+||+.|++++....+.+ ++.||..|.||+|+||.++|++|++.|+++..
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd-l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR-WELISRLCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC-HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887665544 47899999999999999999999999998743
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
. .|+.+||..|+.++.+.
T Consensus 436 ~----------------~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 436 K----------------VATEKDFLKAVDKVISG 453 (467)
T ss_dssp S----------------SBCHHHHHHHHHHHHHH
T ss_pred C----------------ccCHHHHHHHHHHHhcC
Confidence 2 48889999998877543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=399.40 Aligned_cols=250 Identities=37% Similarity=0.641 Sum_probs=229.0
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
-.|.++|+||+|++++|++|+++|.+|+.+|++|..+|+.+++|||||||||||||++|+|||++++ ++|+.+++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~ 248 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPA 248 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 3589999999999999999999999999999999999999999999999999999999999999996 78999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000974 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
++++++|+|+++..++.+|..|...+||||||||||++++.|...+ +.....++.+||..|+++...++++||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 9999999999999999999999999999999999999998875432 2345678899999999999989999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
+|+.||+||+|||||+..|+|++|+.++|.+||+.|+.++....+.+ +..||..|.||+|+||.++|++|++.|+++..
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d-l~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD-FEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC-HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999877655444 48899999999999999999999999998643
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCccc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~ 643 (1205)
. .|+.+||..|+..+.+..
T Consensus 408 ~----------------~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 408 D----------------HINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp S----------------SBCHHHHHHHHHHHHHTC
T ss_pred C----------------CCCHHHHHHHHHHHHhcc
Confidence 2 488999999998887653
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-40 Score=387.26 Aligned_cols=247 Identities=36% Similarity=0.589 Sum_probs=225.6
Q ss_pred cccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 371 QVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 371 ~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.-.|.++|+||+|++++|+.|++++.+|+.+|+.|..+|+.+++|||||||||||||++|+|||++++ ++|+.++
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~ 238 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVN 238 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEE
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEe
Confidence 33488999999999999999999999999999999999999999999999999999999999999995 8899999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000974 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 451 ~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
+++++++|+|+++..++.+|..|+..+||||||||+|.+++.|... .+....+++.+||+.|+++....+++||+||
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999887433 2334578899999999999999999999999
Q ss_pred cccccccccccCCCCccccccCC-CCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHH
Q 000974 528 NRVDAIDGALRRPGRFDREFNFP-LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 528 n~~~~ld~aL~r~gRf~~~I~~~-~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr 606 (1205)
|+++.||++|+|||||+..|+|| +|+.++|..||+.++.++....+.+ ++.||..|.||+|+||.++|++|++.|+++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d-l~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD-LDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC-HHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999997 8999999999999999887655444 489999999999999999999999999987
Q ss_pred hCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 607 KYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 607 ~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
.. ..|+.+||..|+...
T Consensus 398 ~~----------------~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 398 NR----------------YVILQSDLEEAYATQ 414 (428)
T ss_dssp TC----------------SSBCHHHHHHHHHHH
T ss_pred CC----------------CCCCHHHHHHHHHHh
Confidence 43 248899999998754
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-38 Score=399.92 Aligned_cols=283 Identities=34% Similarity=0.590 Sum_probs=203.3
Q ss_pred ccccccCCCCCCCCCCccccccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHH
Q 000974 352 SGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIAR 431 (1205)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~lar 431 (1205)
..+....|+..+...+ ..|.++|++|+|++++|+.|++++.+|+.+|+.|.++|+.++++||||||||||||++|+
T Consensus 454 ~Al~~~~ps~~r~~~~----~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 454 WALSQSNPSALRETVV----EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp HHHSSSSCCCCCCCCC----BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHH
T ss_pred HHHHhCCCcccccccc----cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHH
Confidence 3444555655544322 237899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHH
Q 000974 432 ALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTL 508 (1205)
Q Consensus 432 alA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~L 508 (1205)
+||++++ .+|+.+++++++++|+|+++..++.+|..|+...||||||||||.|++.|+.. ......+++++|
T Consensus 530 aiA~e~~-----~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~l 604 (806)
T 3cf2_A 530 AIANECQ-----ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp HHHHTTT-----CEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHH
T ss_pred HHHHHhC-----CceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHH
Confidence 9999995 78999999999999999999999999999999999999999999999988643 234567899999
Q ss_pred HHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000974 509 LALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 509 l~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
|.+|+++....+|+||+|||+|+.||++|+|||||+..|+|++|+.++|.+||+.++++.....+.+ ++.||..|.|||
T Consensus 605 L~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d-l~~la~~t~g~S 683 (806)
T 3cf2_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFS 683 (806)
T ss_dssp HHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred HHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999887665555 478999999999
Q ss_pred chhHHHHhHHHHHHHHHHhCCceeccCCc---------eEEeccceeeeehhhhhhhcccCcccc
Q 000974 589 GADLKALCTEAAIRAFREKYPQVYTSDDK---------FLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 589 gadI~~L~~eA~~~a~rr~~~~i~~~~~~---------~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
|+||.++|++|++.|+++........... ...+.....|+.+||..|+..++|+..
T Consensus 684 Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 684 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp --CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 99999999999999999864321111000 001112346999999999999998744
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=1.3e-32 Score=309.04 Aligned_cols=261 Identities=37% Similarity=0.614 Sum_probs=208.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
|.++|++|+|++++++.|++.+.+|+.+++.|..+++..++|++|+||||||||+|+++||..++ ..++.+++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~ 79 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPE 79 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHH
Confidence 78999999999999999999999999999999999999999999999999999999999999875 4688899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
+...+.|+.+..+..+|+.+....|+|+|+||+|.+++.+..........++.+++..|++......++++++||.|+.|
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 98888999999999999999888899999999999887654332223456788999999998888889999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccC---CCCchhHHHHHhhh--hhcccchhHHHHhHHHHHHHHHHhC
Q 000974 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWK---QPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~---~~~~~~~l~~LA~~--t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
|++++|+|||+..|+|++|+.++|.+||+.+++... ...+. .+..+|.. |.||+|+||.++|++|++.++++..
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADV-NLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTC-CHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCcccc-CHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886532 22222 34778886 4599999999999999999998764
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCccccc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHR 645 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r 645 (1205)
..... ........|+.+||..|+..+.|+..+
T Consensus 239 ~~~~~-----~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 239 ARQKS-----GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ----------------CCBCHHHHHHHHTTCCCCC--
T ss_pred hhccc-----cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 32111 111234579999999999999987553
No 11
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.98 E-value=9.2e-33 Score=333.24 Aligned_cols=285 Identities=42% Similarity=0.670 Sum_probs=240.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.++..|++++..|+.++++|..+|+.++.+|||+||||||||++|++||+.++ .+|+.+++..
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~ 273 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchH
Confidence 46789999999999999999999999999999999999999999999999999999999999884 6899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAI 533 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 533 (1205)
+.+.++|+....++.+|..+....|+||||||||.|++.+..........++..|+..|+++....+++||+|||.++.|
T Consensus 274 l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 274 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 99999999999999999999999999999999999998877666667788999999999988888899999999999999
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceec
Q 000974 534 DGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYT 613 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~ 613 (1205)
+++++++|||...|+|+.|+.++|.+||+.++.......+.+ +..++..+.||++++|.++|++|+..++++....+..
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~-l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh-HHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999998876654444 4789999999999999999999999999987655433
Q ss_pred cCCceE-EeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHH
Q 000974 614 SDDKFL-IDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQR 664 (1205)
Q Consensus 614 ~~~~~~-~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~ 664 (1205)
...... .......|+.+||..|+..+.|+..+......+.+.|.+++|-..
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 322110 011234689999999999999999999999999999999998654
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.4e-32 Score=314.23 Aligned_cols=229 Identities=37% Similarity=0.644 Sum_probs=208.9
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.+++.|++++.+|+.++++|... ..++++||||||||||||++|+++|+++. ...|+.+++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 378999999999999999999999999999999853 57789999999999999999999999983 3578899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-CCcEEEEccccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-~~~viVI~atn~~~ 531 (1205)
++.+.|+|+.+..++.+|..+...+|+||||||||.|++.+..........++.+|+..|+++.. ..+++||++||.++
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999999887766556677899999999998753 57899999999999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
.+|++|+| ||+..+++++|+.++|.+||+.++......++...+..|+..+.||+|+||.++|++|++.++++..
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998887777778889999999999999999999999999998753
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=5.9e-32 Score=311.16 Aligned_cols=265 Identities=32% Similarity=0.587 Sum_probs=224.5
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+.++|++|+|++.+++.|++++.+|+.++++|.. +..++++|||+||||||||++|+++|++++ .+|+.+++
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~ 84 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEch
Confidence 447899999999999999999999999999999987 457789999999999999999999999985 68899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-cCCcEEEEcccccc
Q 000974 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNRV 530 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-~~~~viVI~atn~~ 530 (1205)
.++.+.|+|+.+..++.+|..+....|+||||||||.|.+.+..........++.+|+..|+++. ...+++||++||.+
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 99999999999999999999999999999999999999987766555566788899999999874 45789999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.||++|++ ||+..|+|++|+.++|.+||+.++......++...+..|+..+.||+++||.++|++|+..++++....
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999988877788888999999999999999999999999999886433
Q ss_pred eeccCC-------------------ceEE--------eccceeeeehhhhhhhcccCcccc
Q 000974 611 VYTSDD-------------------KFLI--------DVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 611 i~~~~~-------------------~~~~--------d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
+..... .... ......|+.+||..|+..+.|+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 211000 0000 011245888899999888887643
No 14
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-33 Score=323.94 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=194.5
Q ss_pred cCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCc
Q 000974 639 ITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDH 718 (1205)
Q Consensus 639 i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~ 718 (1205)
+.|..........|.+.|.+++|+++.++++.+.+. -++.+++.|.++|+ .++.|+|||||||||||+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~---~Pl~~pe~f~~~gi---------~~prGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIE---LPVKHPELFESLGI---------AQPKGVILYGPPGTGKTL 197 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHTC---------CCCCCEEEESCSSSSHHH
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHH---HHHhCHHHHHhCCC---------CCCCceEEeCCCCCCHHH
Confidence 345555666677899999999999888887777642 14566788887764 235799999999999999
Q ss_pred cchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHH
Q 000974 719 LGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVL 788 (1205)
Q Consensus 719 lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~l 788 (1205)
+|+|||+++ +.+|+.+++++++++| +|++++.++.+|..|+..+||||||||||+++.. ...++++.|
T Consensus 198 lAkAiA~e~-~~~f~~v~~s~l~sk~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~l 275 (405)
T 4b4t_J 198 LARAVAHHT-DCKFIRVSGAELVQKY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLEL 275 (405)
T ss_dssp HHHHHHHHH-TCEEEEEEGGGGSCSS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHH
T ss_pred HHHHHHHhh-CCCceEEEhHHhhccc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHH
Confidence 999999999 9999999999999998 8999999999999999999999999999999832 335677888
Q ss_pred HHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCC
Q 000974 789 LTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVS 866 (1205)
Q Consensus 789 l~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 866 (1205)
++.|+++....+|+||||||+| +.||+ +.+|++| ..|+|++|+.++|.+||+.|+.+. ....+++
T Consensus 276 L~~lDg~~~~~~V~vIaATNrp-d~LDp--AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~----------~l~~dvd 342 (405)
T 4b4t_J 276 LNQLDGFETSKNIKIIMATNRL-DILDP--ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM----------NLTRGIN 342 (405)
T ss_dssp HHHHHTTTCCCCEEEEEEESCS-SSSCH--HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS----------BCCSSCC
T ss_pred HHhhhccCCCCCeEEEeccCCh-hhCCH--hHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC----------CCCccCC
Confidence 8889998888999999999998 99999 7777665 889999999999999999998642 3345677
Q ss_pred CCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 867 LPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 867 l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+..|+.. +.|++|++|+++| +|.+.++|+
T Consensus 343 l~~lA~~---t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 343 LRKVAEK---MNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHH---CCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH---CCCCCHHHHHHHHHHHHHHHHHc
Confidence 7777766 8899999999999 888888765
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=1.2e-31 Score=305.69 Aligned_cols=264 Identities=35% Similarity=0.624 Sum_probs=221.6
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.+++.|++++.+|+.+|+.|..+++.++.++||+||||||||++|++||+.++ ..|+.+++.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~~ 83 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGP 83 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEhH
Confidence 378999999999999999999999999999999999999999999999999999999999999985 678999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++.+.++|+.+..++.+|..+....|+||||||||.|++.++... ......++.+|+..|+++....+++||++||.
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 999999999999999999999999999999999999986653221 12345678889999998877788999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000974 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
++.|+++++|+|||+..|+|+.|+.++|.+||+.++.......+.+ +..++..+.||+|+||.++|+.|+..++++...
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~-~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC-HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876543333 478899999999999999999999999876531
Q ss_pred ceecc-CC----ceEE----eccceeeeehhhhhhhcccCcc
Q 000974 610 QVYTS-DD----KFLI----DVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 610 ~i~~~-~~----~~~~----d~~~~~It~~df~~al~~i~ps 642 (1205)
..... .. .... ......|+.+||..|+..+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 10000 00 0000 0112468999999999998875
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=3.2e-31 Score=308.93 Aligned_cols=226 Identities=36% Similarity=0.660 Sum_probs=198.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.++..|++++.+|+.++++|.. +..++++|||+||||||||+||++||+.++ .+|+.+++.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~~~ 119 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 119 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeHHH
Confidence 6789999999999999999999999999999987 557889999999999999999999999985 6889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-CCcEEEEcccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVDA 532 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-~~~viVI~atn~~~~ 532 (1205)
+...|+|..+..++.+|..+....|+||||||||.|.+.+..........++.+|+..|+++.. ..+++||++||.++.
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 9999999999999999999999999999999999999877655555667889999999997754 567999999999999
Q ss_pred ccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHh
Q 000974 533 IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 533 ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
|++++++ ||+..|+|++|+.++|.+||+.++......++...+..|+..+.||+|+||.++|++|++.++++.
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999888766777788999999999999999999999999999875
No 17
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=9.9e-31 Score=334.56 Aligned_cols=424 Identities=17% Similarity=0.213 Sum_probs=283.4
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
...|++|+|.+..+..+.+++.. ....++||+||||||||++|+++|+.+.... ....++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 35788999999999999887654 3457899999999999999999999885432 23556777
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000974 450 KGADVL--SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 450 ~~~~l~--~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
+...++ ..+.|..+..++.+|..+....++||||||+|.|++.+...... .. +.+.+..+...+.+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~----~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VD----AANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HH----HHHHHSSCSSSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HH----HHHHHHHHHhCCCeEEEEEe
Confidence 766665 35778899999999999988788999999999998766542111 11 22334444456788999999
Q ss_pred cccc-----cccccccCCCCccccccCCCCCchhhhhhhhccccc----cCCCCchhHHHHHhhhhhcccc-----hhHH
Q 000974 528 NRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYCG-----ADLK 593 (1205)
Q Consensus 528 n~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----~~~~~~~~~l~~LA~~t~G~sg-----adI~ 593 (1205)
|.++ .+|++|.+ ||. .|.|+.|+.+++.+||+.++.. ....++.+.+..++..+.+|.. ..+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 8754 47899998 997 6999999999999999887765 3566778888888888877644 3567
Q ss_pred HHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhh
Q 000974 594 ALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYI 673 (1205)
Q Consensus 594 ~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l 673 (1205)
.++.+|+..+...... .....|+.+++..++..+... +...+.|.....+....+.+...
T Consensus 400 ~lld~a~~~~~~~~~~------------~~~~~v~~~di~~~~~~~~~i-------p~~~~~~~~~~~l~~l~~~l~~~- 459 (758)
T 1r6b_X 400 DVIDEAGARARLMPVS------------KRKKTVNVADIESVVARIARI-------PEKSVSQSDRDTLKNLGDRLKML- 459 (758)
T ss_dssp HHHHHHHHHHHHSSSC------------CCCCSCCHHHHHHHHHHHSCC-------CCCCSSSSHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccccc------------ccCCccCHHHHHHHHHHhcCC-------CccccchhHHHHHHHHHHHHHhh-
Confidence 7787776443321100 012347888888887766422 22234455544433322222211
Q ss_pred hhcCCCCccchhhh-hhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCC----CCCC
Q 000974 674 SDIFPPLGMSSELT-KLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDP----SAKT 748 (1205)
Q Consensus 674 ~~i~p~~~~~~~~~-~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~----~~g~ 748 (1205)
++..-.....+. .+.....|...|..+...+||+||||||||++|+++++.+ +.+|+.++++++.... ..|.
T Consensus 460 --v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 460 --VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp --SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred --ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcchhhHhhhcCC
Confidence 111111011111 1111223544454434479999999999999999999998 7889999887765421 1121
Q ss_pred hh-----hHHHHhhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcC---------CCCCeEEeccCCcCCc--
Q 000974 749 PE-----EALVHIFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLA-- 812 (1205)
Q Consensus 749 se-----~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~---------~~~~v~vIattn~~~~-- 812 (1205)
+. .....++..++...++|||||||+.+.. .+.+.|+++|+.-. .+.+++||+|||....
T Consensus 537 ~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~----~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~ 612 (758)
T 1r6b_X 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 612 (758)
T ss_dssp CSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH----HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC--
T ss_pred CCCCcCccccchHHHHHHhCCCcEEEEeCccccCH----HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhh
Confidence 11 0112234444556679999999998754 56677888888521 1357899999997532
Q ss_pred ----------------------cccCCCccccCCCceeeecCCCccchhhhHHHHHHHH
Q 000974 813 ----------------------EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 813 ----------------------~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.+.+.+..+| ..++.|++|+.+++..|++.++...
T Consensus 613 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 613 ERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRL--DNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp ---------------CHHHHHHHSCHHHHTTC--SEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hhcccCccccchHHHHHHHHHHhcCHHHHhhC--CcceeeCCCCHHHHHHHHHHHHHHH
Confidence 2223222233 2678899999999999999998753
No 18
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.8e-32 Score=313.58 Aligned_cols=224 Identities=18% Similarity=0.183 Sum_probs=189.2
Q ss_pred ccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhh
Q 000974 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala 724 (1205)
.......+.+.|.+++|+++.++++.+.+.- ++.+++.|.++|+ .++.|+|||||||||||++|+|||
T Consensus 170 ~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~---Pl~~pe~f~~~Gi---------~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 170 VMKMDKSPTESYSDIGGLESQIQEIKESVEL---PLTHPELYEEMGI---------KPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CCEEESSCCCCGGGTCSCHHHHHHHHHHHHH---HHHCCHHHHHHTC---------CCCSEEEEESSTTTTHHHHHHHHH
T ss_pred eeeeccCCCCcceecCcHHHHHHHHHHHHHH---HHhCHHHHHhCCC---------CCCCCCceECCCCchHHHHHHHHH
Confidence 3344567889999999998888887776432 4556777777763 235799999999999999999999
Q ss_pred hhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHh
Q 000974 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEE 794 (1205)
Q Consensus 725 ~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~ 794 (1205)
+++ +.+|+.++.++++++| +|++++.++.+|..|+..+||||||||||+++.. ...+++..|++.|++
T Consensus 238 ~e~-~~~fi~v~~s~l~sk~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 238 NQT-SATFLRIVGSELIQKY-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp HHH-TCEEEEEESGGGCCSS-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred HHh-CCCEEEEEHHHhhhcc-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 999 8999999999999998 7999999999999999999999999999999732 335667778888888
Q ss_pred cCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 000974 795 LPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPK 872 (1205)
Q Consensus 795 ~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~ 872 (1205)
+....+|+||||||+| +.||+ +.+|++| ..|+|++|+.++|.+||+.|+.++ ....++++..|+.
T Consensus 316 ~~~~~~ViVIaATNrp-d~LDp--ALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~----------~l~~dvdl~~LA~ 382 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKI-ETLDP--ALIRPGRIDRKILFENPDLSTKKKILGIHTSKM----------NLSEDVNLETLVT 382 (437)
T ss_dssp CCCSSSEEEEEEESCS-TTCCT--TSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS----------CBCSCCCHHHHHH
T ss_pred cCCCCCEEEEEeCCCh-hhcCH--HHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC----------CCCCcCCHHHHHH
Confidence 8888999999999998 99999 7788766 788999999999999999998642 3345677777776
Q ss_pred CCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 873 VPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 873 ~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
. +.|++|++|+++| +|.+.++|+
T Consensus 383 ~---T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 383 T---KDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp H---CCSCCHHHHHHHHHHHHHHHHHT
T ss_pred h---CCCCCHHHHHHHHHHHHHHHHHc
Confidence 6 8899999999999 888888765
No 19
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-31 Score=314.28 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=189.5
Q ss_pred ccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccc
Q 000974 641 PAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLG 720 (1205)
Q Consensus 641 ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA 720 (1205)
|..........+.++|.+++|+...++++.+.+. -++.+++.|.++|+ .++.|+|||||||||||++|
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~---~pl~~pe~f~~~g~---------~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIV---LPMKRADKFKDMGI---------RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTH---HHHHCSHHHHHHCC---------CCCCEEEEESCTTSSHHHHH
T ss_pred chhhhcccCCCCCCChHhcCcHHHHHHHHHHHHH---HHHhCHHHHHhCCC---------CCCCeeEEECcCCCCHHHHH
Confidence 3334444556788999999999888888777642 24556777777663 23579999999999999999
Q ss_pred hhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHH
Q 000974 721 PAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLT 790 (1205)
Q Consensus 721 ~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~ 790 (1205)
+|||+++ +.+|+.++++.++++| +|++++.++.+|..|+..+||||||||||.++.. ...+++..|++
T Consensus 233 kAiA~e~-~~~f~~v~~s~l~~~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 233 RACAAQT-NATFLKLAAPQLVQMY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp HHHHHHH-TCEEEEEEGGGGCSSC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCEEEEehhhhhhcc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 9999999 8999999999999998 8999999999999999999999999999999732 22355667778
Q ss_pred HHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000974 791 LLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLP 868 (1205)
Q Consensus 791 lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~ 868 (1205)
.|+++.+..+|+||||||+| +.||+ +.++++| ..|+|++|+.++|.+||+.|+.+. ....++++.
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp-~~LD~--AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~----------~~~~dvdl~ 377 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRV-DVLDP--ALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM----------TTDDDINWQ 377 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSC-CCCCT--TTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS----------CBCSCCCHH
T ss_pred HhhccCCCCCEEEEEeCCCc-hhcCH--hHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC----------CCCCcCCHH
Confidence 88888888899999999998 99999 7777665 788999999999999999999763 334556777
Q ss_pred CCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 869 ELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 869 ~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.|+.. +.|++|++|+++| +|.+.++|+
T Consensus 378 ~lA~~---t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 378 ELARS---TDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp HHHHH---CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---CCCCCHHHHHHHHHHHHHHHHHc
Confidence 77766 8899999999999 888888776
No 20
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-31 Score=313.59 Aligned_cols=228 Identities=14% Similarity=0.183 Sum_probs=192.1
Q ss_pred ccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccc
Q 000974 641 PAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLG 720 (1205)
Q Consensus 641 ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA 720 (1205)
|..........+.+.|.+++|+...++++.+.+.- ++.+++.|.++|+ .++.|+|||||||||||++|
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~---pl~~p~~f~~~g~---------~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIEL---PLKNPEIFQRVGI---------KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHH---HHHCHHHHHHHCC---------CCCCEEEEESCTTSSHHHHH
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHH---HHhCHHHHHhCCC---------CCCCeEEEECCCCCcHHHHH
Confidence 34444555668899999999998888877776422 4556777777763 23579999999999999999
Q ss_pred hhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHH
Q 000974 721 PAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLT 790 (1205)
Q Consensus 721 ~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~ 790 (1205)
+|||+++ +++|+.++++.++++| .|+++..++.+|..|+..+||||||||||.++.. ...++++.|++
T Consensus 233 kAiA~e~-~~~~~~v~~s~l~sk~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 233 KAVAATI-GANFIFSPASGIVDKY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp HHHHHHH-TCEEEEEEGGGTCCSS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHh-CCCEEEEehhhhcccc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 9999999 8999999999999998 7999999999999999999999999999999732 34566778888
Q ss_pred HHHhcCCCCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000974 791 LLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLP 868 (1205)
Q Consensus 791 lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~ 868 (1205)
.|+++.+..+|+||||||+| +.||+ +.++++| ..|+|++|+.++|..||+.|+.+. +...++++.
T Consensus 311 ~lDg~~~~~~vivI~ATNrp-~~LDp--AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~----------~~~~d~dl~ 377 (437)
T 4b4t_L 311 QMDGFDNLGQTKIIMATNRP-DTLDP--ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV----------KKTGEFDFE 377 (437)
T ss_dssp HHHSSSCTTSSEEEEEESST-TSSCT--TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS----------CBCSCCCHH
T ss_pred HhhcccCCCCeEEEEecCCc-hhhCH--HHhCCCccceeeecCCcCHHHHHHHHHHHhcCC----------CCCcccCHH
Confidence 89988888899999999998 99999 7777766 789999999999999999999752 334567777
Q ss_pred CCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 869 ELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 869 ~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.|+.. +.||+|++|+++| +|.+.++++
T Consensus 378 ~lA~~---t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 378 AAVKM---SDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp HHHHT---CCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHh---CCCCCHHHHHHHHHHHHHHHHHc
Confidence 77766 8899999999999 888888765
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.8e-30 Score=311.22 Aligned_cols=229 Identities=37% Similarity=0.653 Sum_probs=198.5
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.++..|++++.+|+.++++|.. +..++++|||+||||||||+||++||+.+. ..+|+.+++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~ 202 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 202 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHH
Confidence 37899999999999999999999999999999985 346789999999999999999999999982 2578999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-CCcEEEEccccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-RGQVVLIGATNRVD 531 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-~~~viVI~atn~~~ 531 (1205)
++++.|+|..+..++.+|..+....|+||||||||.|++.+..........++.+|+..|+++.. ..+++||+|||.++
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999887665555677889999999998753 57899999999999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
.|+++|+| ||+..++|++|+.++|..||+.++......++...+..|+..+.||+|+||.++|++|++.++++..
T Consensus 283 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred ccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998877666777789999999999999999999999999998753
No 22
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=6.4e-30 Score=326.74 Aligned_cols=413 Identities=18% Similarity=0.196 Sum_probs=248.9
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
.-.+++|+|.+..+..|.+++.. ....++||+||||||||++|++||+.+.... ....++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34688999999999999887654 3456899999999999999999999984321 24556666
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++ ...|.|+.+..++.+|..+....++||||| . ...+.+.|+..| ..+.+.||++||.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l----~~~~v~~I~at~~ 300 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL----ARGELQCIGATTL 300 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECCT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHH----hcCCEEEEeCCCh
Confidence 65 556788999999999999998889999999 1 112233344333 3678999999998
Q ss_pred cc-----cccccccCCCCccccccCCCCCchhhhhhhhccccc----cCCCCchhHHHHHhhhhhcc-----cchhHHHH
Q 000974 530 VD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGY-----CGADLKAL 595 (1205)
Q Consensus 530 ~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----~~~~~~~~~l~~LA~~t~G~-----sgadI~~L 595 (1205)
.+ .++++|++ || ..|.|+.|+.+++.+||+.++.. .+..++++.+..++..+.+| .+.....+
T Consensus 301 ~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 301 DEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp TTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 87 68999999 99 56999999999999999977766 45667788888888776655 34566667
Q ss_pred hHHHHHHHHHHhCCcee---------------------ccCCceE------------------------Eeccceeeeeh
Q 000974 596 CTEAAIRAFREKYPQVY---------------------TSDDKFL------------------------IDVDSVTVEKY 630 (1205)
Q Consensus 596 ~~eA~~~a~rr~~~~i~---------------------~~~~~~~------------------------~d~~~~~It~~ 630 (1205)
+.+|+..+..+....-. ..+.... .......++.+
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 457 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTH
T ss_pred HHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHH
Confidence 77776544433211000 0000000 00001112233
Q ss_pred hhhhhhcccCccccccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhh----hhhhcccCCccccccccee
Q 000974 631 HFIEAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELT----KLCMLSHGSAIPLVYRPRL 706 (1205)
Q Consensus 631 df~~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~----~l~~~~~G~~~P~~~~~~l 706 (1205)
++...+............. -.+..+..+...+. ..++ .+..... .+.....|...|..+...+
T Consensus 458 ~i~~~v~~~~~ip~~~~~~----~~~~~l~~l~~~l~------~~vi---Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~ 524 (758)
T 3pxi_A 458 DIAMVVSSWTGVPVSKIAQ----TETDKLLNMENILH------SRVI---GQDEAVVAVAKAVRRARAGLKDPKRPIGSF 524 (758)
T ss_dssp HHHHHHHTTC-------CH----HHHSCC-CHHHHHH------TTSC---SCHHHHHHHHHHHHHHTTTCSCTTSCSEEE
T ss_pred HHHHHHHHHhCCChHHhhH----HHHHHHHHHHHHHh------CcCc---ChHHHHHHHHHHHHHHHcccCCCCCCceEE
Confidence 3333222221100000000 00000000111110 0111 1111111 1111122333343333469
Q ss_pred eeecCCCCCCCccchhhhhhc--ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHH
Q 000974 707 LLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQL 784 (1205)
Q Consensus 707 Ll~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~ 784 (1205)
||+||||||||++|++|++.+ .+.+|+.++++.+...+.. . ...++..++...++|||||||+.+.. .+
T Consensus 525 Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~----~~ 595 (758)
T 3pxi_A 525 IFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST-S----GGQLTEKVRRKPYSVVLLDAIEKAHP----DV 595 (758)
T ss_dssp EEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC-C-------CHHHHHHCSSSEEEEECGGGSCH----HH
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc-c----cchhhHHHHhCCCeEEEEeCccccCH----HH
Confidence 999999999999999999986 3478999999998876532 2 22333444456679999999998754 55
Q ss_pred HHHHHHHHHhcC---------CCCCeEEeccCCcCCcc-----------ccCCCccccCCCceeeecCCCccchhhhHHH
Q 000974 785 RAVLLTLLEELP---------SHLPILLLGSSSVPLAE-----------VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 785 ~~~ll~lL~~~~---------~~~~v~vIattn~~~~~-----------Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
.+.|+++|+.-. ...+++||+|||.+... +.+.+..+|+ .++.|++|+.+++..|++.
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~--~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID--EIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS--EEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC--eEEecCCCCHHHHHHHHHH
Confidence 666888887621 34578999999976332 4442333333 6888999999999999999
Q ss_pred HHHHH
Q 000974 845 LIEAA 849 (1205)
Q Consensus 845 ~l~~~ 849 (1205)
++..+
T Consensus 674 ~l~~~ 678 (758)
T 3pxi_A 674 MSDQL 678 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 23
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-31 Score=309.86 Aligned_cols=221 Identities=14% Similarity=0.168 Sum_probs=185.3
Q ss_pred eecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhc
Q 000974 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
....+.+.|.+++|+...++++.+.|.- ++.+++.|.++|+ .++.|+|||||||||||++|+|||+++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~---pl~~pe~f~~~Gi---------~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVEL---PLLSPERFATLGI---------DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHH---HHHCHHHHHHHTC---------CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHH---HhcCHHHHHHCCC---------CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3457889999999998888887776421 4556777777764 235799999999999999999999999
Q ss_pred ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCC
Q 000974 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPS 797 (1205)
Q Consensus 728 ~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~ 797 (1205)
+.+|+.++++.++++| +|++++.++.+|..|+..+||||||||+|.++.. ...+++..|++.|++...
T Consensus 268 -~~~fi~vs~s~L~sk~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 268 -DATFIRVIGSELVQKY-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp -TCEEEEEEGGGGCCCS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred -CCCeEEEEhHHhhccc-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 8999999999999998 8999999999999999999999999999999732 234556667777787888
Q ss_pred CCCeEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Q 000974 798 HLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (1205)
Q Consensus 798 ~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~ 875 (1205)
..+|+||||||+| +.||+ +.+|++| .+|+|++|+.++|.+||+.|+.+. ....++++..|+..
T Consensus 346 ~~~ViVIaATNrp-d~LDp--ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~----------~l~~dvdl~~LA~~-- 410 (467)
T 4b4t_H 346 RGNIKVMFATNRP-NTLDP--ALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM----------SVERGIRWELISRL-- 410 (467)
T ss_dssp TTTEEEEEECSCT-TSBCH--HHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS----------CBCSSCCHHHHHHH--
T ss_pred CCcEEEEeCCCCc-ccCCh--hhhccccccEEEEeCCcCHHHHHHHHHHHhcCC----------CCCCCCCHHHHHHH--
Confidence 8899999999998 99999 7777554 889999999999999999998642 33456677777766
Q ss_pred ccCCCchhhhhHhH-HHHHHHHHH
Q 000974 876 VESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 876 ~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+.|++|++|+++| +|.+.++|+
T Consensus 411 -T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 411 -CPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHc
Confidence 8899999999999 888888776
No 24
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.9e-29 Score=301.99 Aligned_cols=246 Identities=39% Similarity=0.617 Sum_probs=213.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|+++++..|++++.+ +..+..|..+|+..++++||+||||||||+||++||.+++ ++|+.+++.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~ 84 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSD 84 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHH
Confidence 578999999999999999999876 7788999999999999999999999999999999999985 6788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
+...++|.+...++.+|..+....||||||||||.|.+.++.. .......++.+|+..|+++....+++||++||.+
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998876532 2233457889999999988777889999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.+|++++|+|||+..|.|+.|+.++|.+||+.++.......+.+ +..++..+.||+|+||.++|++|+..+.++..
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~-l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-- 241 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN-LEIIAKRTPGFVGADLENLVNEAALLAAREGR-- 241 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999998765543333 57799999999999999999999998886532
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000974 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
..|+.+||..++..+.+.
T Consensus 242 --------------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 242 --------------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp --------------SSBCHHHHHHHHHHHC--
T ss_pred --------------CeecHHHHHHHHHHHhcC
Confidence 248889999999887654
No 25
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-30 Score=306.66 Aligned_cols=223 Identities=16% Similarity=0.179 Sum_probs=188.9
Q ss_pred cceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhh
Q 000974 646 GATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILH 725 (1205)
Q Consensus 646 ~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~ 725 (1205)
......+.+.|.+++|+....+++.+.+.. ++.+++.|.++|+ .++.|+|||||||||||++|+|||+
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~---pl~~p~~~~~~g~---------~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVEL---PLVQADLYEQIGI---------DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCC---------CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHH---HHhCHHHHHhCCC---------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 334467889999999998888888776432 3455677776653 2357999999999999999999999
Q ss_pred hcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhc
Q 000974 726 ELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEEL 795 (1205)
Q Consensus 726 ~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~ 795 (1205)
++ +++|+.+++++++++| .|+++..++.+|..|+..+||||||||+|.++.. ...++++.|++.|+++
T Consensus 229 ~~-~~~~~~v~~~~l~~~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 229 ST-KAAFIRVNGSEFVHKY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp HH-TCEEEEEEGGGTCCSS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred Hh-CCCeEEEecchhhccc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 99 8999999999999998 7999999999999999999999999999999832 3467889999999999
Q ss_pred CCCCCeEEeccCCcCCccccCCCccccCCC--ceeeec-CCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 000974 796 PSHLPILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVE-KPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPK 872 (1205)
Q Consensus 796 ~~~~~v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~-~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~ 872 (1205)
....+|+||||||+| +.||+ +.+|++| ..|+|+ +|+.++|..||+.|+.+. ....++++..|+.
T Consensus 307 ~~~~~v~vI~aTN~~-~~LD~--AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~----------~l~~~~dl~~lA~ 373 (428)
T 4b4t_K 307 DQSTNVKVIMATNRA-DTLDP--ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM----------SLAPEADLDSLII 373 (428)
T ss_dssp CSSCSEEEEEEESCS-SSCCH--HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS----------CBCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCCh-hhcCh--hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC----------CCCcccCHHHHHH
Confidence 988999999999998 99999 7788776 677885 899999999999998742 3345567777776
Q ss_pred CCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 873 VPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 873 ~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
. +.|++|++|+++| +|.+.++|+
T Consensus 374 ~---t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 374 R---NDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp H---TTTCCHHHHHHHHHHHHHHHHHT
T ss_pred H---CCCCCHHHHHHHHHHHHHHHHHC
Confidence 6 8899999999999 888888776
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=5e-29 Score=281.16 Aligned_cols=249 Identities=42% Similarity=0.696 Sum_probs=218.1
Q ss_pred ccccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 372 VDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 372 ~~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+.++|++|+|++.+++.|.+++..|+.+++.|..+|+.++.++||+||||||||++|+++|+.++ ..++.+++
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~ 84 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVG 84 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEG
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 3478899999999999999999999999999999999999999999999999999999999999985 67888999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000974 452 ADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
.++...+.|.....++.+|..+....|+||||||||.|++.+... ........+..++..++++....+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 999999999999999999999999999999999999998766432 22234566777788888777778999999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
.++.+++++++++||+..+.|+.|+.+++.+||+.++.........+ +..++..+.|+++++|..+|+.|...|+.+..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~ 243 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN-LEEIAKMTEGCVGAELKAICTEAGMNAIRELR 243 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988776554433 47899999999999999999999999988643
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
. .|+.+||..++..+...
T Consensus 244 ~----------------~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 244 D----------------YVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp S----------------SBCHHHHHHHHHHHHHH
T ss_pred C----------------cCCHHHHHHHHHHHHhc
Confidence 2 48889999888876543
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=9.4e-29 Score=274.92 Aligned_cols=247 Identities=36% Similarity=0.595 Sum_probs=195.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.++..|++++.+ +.+++.|..+|+..++++||+||||||||++|+++|+.++ .+|+.+++.+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~ 74 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAE 74 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHH
Confidence 457899999999999999999877 7889999999999999999999999999999999999985 5688889998
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh----hHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ----EQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~----~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
+...+.+.....++.+|..+....|+||||||+|.|++.+.... .......+..|+..+++.....+++||++||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~ 154 (262)
T 2qz4_A 75 FVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR 154 (262)
T ss_dssp TSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC
Confidence 88888888889999999999988899999999999987654322 12234567888888888777778999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhH-HHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSREL-KSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~-l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
++.++++++++|||+..++|+.|+.++|.+||+.++...+.....+. +..++..+.|+++++|.++|+.|+..+.++..
T Consensus 155 ~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~ 234 (262)
T 2qz4_A 155 ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH 234 (262)
T ss_dssp GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------
T ss_pred hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988877665553 47899999999999999999999987776431
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
..|+.+||..++..+.+.
T Consensus 235 ----------------~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 235 ----------------TSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ------------------CCBCCHHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHhccC
Confidence 247888998888876554
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=284.05 Aligned_cols=259 Identities=33% Similarity=0.582 Sum_probs=217.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.+++.|++++.+|+.++++|...+ .++++|||+||||||||++|+++|+.++ ..|+.+++.+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~ 152 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASS 152 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHH
Confidence 578999999999999999999999999999998775 6788999999999999999999999984 6889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc--CCcEEEEccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRVD 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~--~~~viVI~atn~~~ 531 (1205)
+...+.|.....++.+|..+....|+||||||||.|++.+..........++..|+..|++... ..+++||++||.++
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999899999999999998876555455567888899999987643 46799999999999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCce
Q 000974 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQV 611 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i 611 (1205)
.+++++++ ||...++++.|+.+++.+||+.++...+..++...+..|+..+.||++++|..+|+.|+..++++.....
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 9999999999999999999999998877777888889999999999999999999999999988653211
Q ss_pred eccCCceEEeccceeeeehhhhhhhcccCcccc
Q 000974 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 612 ~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
.. .........|+.+||..++..+.|+..
T Consensus 311 ~~----~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 311 IA----TITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ------------CCCBCHHHHHHHHHHHGGGCC
T ss_pred hc----cccccccCCcCHHHHHHHHHhcCCCCC
Confidence 11 011122346899999999998887643
No 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.95 E-value=1.6e-28 Score=317.26 Aligned_cols=206 Identities=26% Similarity=0.306 Sum_probs=139.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
..+|++|+|.+..+..+.+++.. ...+++||+||||||||++|+++|+.+.... ....++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45788999999999988887643 3456899999999999999999999985421 14678888
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhhc-CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000974 450 KGADVL--SKWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 450 ~~~~l~--~~~~g~~e~~l~~lf~~a~~~-~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
++..+. ..+.|+.+..++.+|..+... .++||||||+|.|.+.+...+. ..+.+.|...+. .+.+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh----CCCeEEEEe
Confidence 888776 567889999999999998875 6889999999999876543321 223334444444 467889999
Q ss_pred ccccc----cccccccCCCCccccccCCCCCchhhhhhhhcccccc----CCCCchhHHHHHhhhhhcccc-----hhHH
Q 000974 527 TNRVD----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----KQPPSRELKSELAASCVGYCG-----ADLK 593 (1205)
Q Consensus 527 tn~~~----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----~~~~~~~~l~~LA~~t~G~sg-----adI~ 593 (1205)
||.++ .++++|.+ ||.. |.|+.|+.+++.+||+.++..+ +..++++.+..++..+.+|.. ....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 98765 37999999 9975 9999999999999998776543 556677888888887776543 3455
Q ss_pred HHhHHHHHHH
Q 000974 594 ALCTEAAIRA 603 (1205)
Q Consensus 594 ~L~~eA~~~a 603 (1205)
.++.+|+..+
T Consensus 383 ~lldea~a~~ 392 (854)
T 1qvr_A 383 DLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=3.1e-28 Score=276.44 Aligned_cols=258 Identities=34% Similarity=0.546 Sum_probs=215.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.++..|.+++..|+.++++|..++ .++.++||+||||||||++|+++|+.++ .+|+.+++..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 89 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAAS 89 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHH
Confidence 678999999999999999999999999999998776 5678999999999999999999999985 6788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccC---CcEEEEcccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR---GQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~---~~viVI~atn~~ 530 (1205)
+...+.|.....++.+|..+....|+||||||+|.+++.+..........++..|+..+++.... ..++||++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99888999999999999999999999999999999988765544444566778888888876543 579999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.+++++++ ||...+++++|+.+++..|++.++...+..++...+..|+..+.|+++++|..+|+.|+..++++....
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999887777788888999999999999999999999999998875322
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCccc
Q 000974 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAA 643 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~ 643 (1205)
.... ........|+.+||..++..+.|+.
T Consensus 248 ~~~~----~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 248 QVKC----LDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp ----------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred hccc----ccccccCCcCHHHHHHHHHHcCCCC
Confidence 1110 0111234689999999999888763
No 31
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=5.4e-28 Score=268.86 Aligned_cols=244 Identities=36% Similarity=0.599 Sum_probs=205.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+..+|++|+|++.+++.|.+++.+ +.++..|..++...+.++||+||||||||++|+++|+.++ .+|+.+++.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~ 80 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSD 80 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHH
Confidence 678999999999999999998876 7788999999999999999999999999999999999884 4678889998
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
+...+.|.....++.+|..+....|+||||||+|.|.+.+... .......++..++..|+++....+++||++||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 8888888888889999999998889999999999998765432 1222346788899999988777889999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.+++++.+++||+..+.|+.|+.++|.+|++.++.......+.. +..++..+.||++++|.++|..|+..|..+..
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~-~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~-- 237 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID-AAIIARGTPGFSGADLANLVNEAALFAARGNK-- 237 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999988765443332 46789999999999999999999998887542
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccC
Q 000974 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
..|+.+||..++..+.
T Consensus 238 --------------~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 238 --------------RVVSMVEFEKAKDKIM 253 (257)
T ss_dssp --------------SSBCHHHHHHHHHHHT
T ss_pred --------------CcccHHHHHHHHHHHh
Confidence 2488899988887654
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=282.57 Aligned_cols=258 Identities=34% Similarity=0.563 Sum_probs=210.0
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.+++.|.+++..|+.++++|..++ .++++|||+||||||||++|++||..++ .+|+.+++.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~ 182 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAA 182 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSC
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHH
Confidence 3678999999999999999999999999999999877 5678999999999999999999999985 689999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc--CCcEEEEcccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS--RGQVVLIGATNRV 530 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~--~~~viVI~atn~~ 530 (1205)
.+...|+|.....++.+|..+....|+||||||||.|+..+..........++..|+..|+++.. ..+++||++||.+
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998876655455567888899999987654 4679999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.|++++++ ||...|+|+.|+.++|..||+.++...+..+..+.+..|+..+.||++++|..||..|+..++++....
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 999899999999999999999999888888888888999999999999999999999999999875432
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCcc
Q 000974 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps 642 (1205)
..... .......|+.+||..++..+.+.
T Consensus 341 ~~~~~----~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 341 QVKNM----SASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp ---CC----SSSCCCCCCHHHHHHHHHHCCCS
T ss_pred hhhcc----chhhcCCcCHHHHHHHHHHcCCC
Confidence 22111 11123358889999998877654
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=1.4e-27 Score=287.34 Aligned_cols=248 Identities=38% Similarity=0.579 Sum_probs=214.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|+++++..|++++.+ +..+..|..+++..++++||+||||||||+||++||..+. ..|+.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 678999999999999999999876 7788899999999999999999999999999999999884 6788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
+...++|.....++.+|+.+....|+||||||||.+...+... .......++.+|+..|++......++||++||.|
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p 179 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCG
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCCh
Confidence 9888889988999999999888889999999999998765421 1233457788999999988777789999999999
Q ss_pred ccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 531 DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 531 ~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
+.||++|+|+|||+..|.|+.|+.++|.+||+.++....+..+.+ +..+|..+.|++|+||.++|++|+..+.++..
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~-l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~-- 256 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR-- 256 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST-THHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC--
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999988765443333 47899999999999999999999988776421
Q ss_pred eeccCCceEEeccceeeeehhhhhhhcccCcccc
Q 000974 611 VYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAH 644 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~ 644 (1205)
..|+.+||..++..+.+...
T Consensus 257 --------------~~It~~dl~~al~~v~~~~~ 276 (499)
T 2dhr_A 257 --------------RKITMKDLEEAADRVMMLPA 276 (499)
T ss_dssp --------------SSCCSHHHHHHHHHHTTCSS
T ss_pred --------------CccCHHHHHHHHHHHhcccc
Confidence 24889999999988776543
No 34
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=1.2e-28 Score=314.85 Aligned_cols=264 Identities=35% Similarity=0.619 Sum_probs=213.2
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.+++.|.+++.+|+.+++.|..+++.++.++||+||||||||+||++||..++ ..|+.+++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~ 545 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGP 545 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCCS
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEech
Confidence 478999999999999999999999999999999999999999999999999999999999999985 567888999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++.+.|+|+.+..++.+|..+....||||||||||.|++.+... ......+++++||..|+++....+++||+|||+
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBS
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCC
Confidence 99999999999999999999999999999999999998877542 234567899999999999888889999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000974 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
++.||++++|||||+..|+|++|+.+++..||+.++.......+.+ +..|+..+.||++++|.++|++|+..|+++...
T Consensus 626 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~ 704 (806)
T 1ypw_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCC-CSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC--
T ss_pred cccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccC-HHHHHHhccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876544433 367899999999999999999999999987643
Q ss_pred ceeccCCce---------EEeccceeeeehhhhhhhcccCcc
Q 000974 610 QVYTSDDKF---------LIDVDSVTVEKYHFIEAMSTITPA 642 (1205)
Q Consensus 610 ~i~~~~~~~---------~~d~~~~~It~~df~~al~~i~ps 642 (1205)
......... ........|+.+||..++..+.|+
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 746 (806)
T 1ypw_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp ----------------------CCTTTTTTSSCCCCCC----
T ss_pred HHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCC
Confidence 211100000 001112358888898888777654
No 35
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=2.8e-26 Score=254.59 Aligned_cols=241 Identities=39% Similarity=0.597 Sum_probs=199.9
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|++.++..+++++.. +..+..+..+++..++|++|+||||||||+|++++|..+. ..++.+++.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~ 83 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 83 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 3789999999999999999998765 5567788888888899999999999999999999999875 457788888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++...+.+.....+..+|+.+....|+++||||||.+...+... .......++.+++..|++......++++++||.
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCC
Confidence 88877788888889999999887789999999999987654321 122345678889999998777778999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000974 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
|+.+|++++|++||+..|+|+.|+.++|.+||+.++.......+.+ +..++..+.|++++||.++|.+|+..+..+..
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~- 241 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLENLLNEAALLAAREGR- 241 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999998887654433322 57899999999999999999999988876532
Q ss_pred ceeccCCceEEeccceeeeehhhhhhh
Q 000974 610 QVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (1205)
Q Consensus 610 ~i~~~~~~~~~d~~~~~It~~df~~al 636 (1205)
..|+.+||..++
T Consensus 242 ---------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 ---------------RKITMKDLEEAA 253 (254)
T ss_dssp ---------------SSBCHHHHHHHT
T ss_pred ---------------CCcCHHHHHHHh
Confidence 137788887765
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=1.5e-27 Score=266.70 Aligned_cols=249 Identities=38% Similarity=0.595 Sum_probs=201.6
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+.++|++|+|++.++..|.+++.+ +.+++.|..++...+.++||+||||||||++|+++|+.++ .+|+.+++..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~ 79 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGSS 79 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechHH
Confidence 578999999999999999998876 7889999999999999999999999999999999999985 4677788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhh----hHHHHHHHHHHHHHhhCccc-CCcEEEEcccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQ----EQIHNSIVSTLLALMDGLDS-RGQVVLIGATN 528 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~----~~~~~~v~~~Ll~~ld~~~~-~~~viVI~atn 528 (1205)
+...+.|.....++.+|..+....|+||||||+|.|.+.+...+ ......++..|+..+++... ...++||++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 80 FIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp TTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred HHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 88777777777778899999888899999999999987653221 11122355667777776543 34589999999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhC
Q 000974 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKY 608 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~ 608 (1205)
.++.+++++++++||+..|+|+.|+.++|.+||+.++.......+.+ +..++..+.|++|++|.++|+.|+..|..+.
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~- 237 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN-LQEVAKLTAGLAGADLANIINEAALLAGRNN- 237 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC-TTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999999999999988765443322 4678999999999999999999987765432
Q ss_pred CceeccCCceEEeccceeeeehhhhhhhcccCccccc
Q 000974 609 PQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHR 645 (1205)
Q Consensus 609 ~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r 645 (1205)
...|+.++|..++..+.+...+
T Consensus 238 ---------------~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 238 ---------------QKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp ---------------CCSCCHHHHHTSCTTCCCCCC-
T ss_pred ---------------cCCcCHHHHHHHHHHHhhcchh
Confidence 1248889999999888776543
No 37
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=4.8e-25 Score=248.15 Aligned_cols=241 Identities=39% Similarity=0.588 Sum_probs=198.9
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.+.++|++|+|+++++..|+.++.. +..+..+..+++..+.+++|+||||||||+|+++||..+. ..++.+++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~ 107 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 107 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH
Confidence 3789999999999999999998765 4567778888888889999999999999999999999884 457788888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchh---hhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 453 DVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSK---QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++...+.+.....+..+|+.+....|+++||||||.+...+... ........+..++..|++......++++++||.
T Consensus 108 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 108 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCC
Confidence 88777778888888999999987789999999999887654321 112345677888888988777777999999999
Q ss_pred cccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCC
Q 000974 530 VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYP 609 (1205)
Q Consensus 530 ~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~ 609 (1205)
|+.||++++|++||+..|+|+.|+.++|.+||+.++.......+. .+..++..+.|++++||.++|..|+..+..+..
T Consensus 188 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~- 265 (278)
T 1iy2_A 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV-DLALLAKRTPGFVGADLENLLNEAALLAAREGR- 265 (278)
T ss_dssp TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC-CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999999999999999888765443332 257899999999999999999999988876431
Q ss_pred ceeccCCceEEeccceeeeehhhhhhh
Q 000974 610 QVYTSDDKFLIDVDSVTVEKYHFIEAM 636 (1205)
Q Consensus 610 ~i~~~~~~~~~d~~~~~It~~df~~al 636 (1205)
..|+.+||..++
T Consensus 266 ---------------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 266 ---------------RKITMKDLEEAA 277 (278)
T ss_dssp ---------------CSBCHHHHHHHT
T ss_pred ---------------CCcCHHHHHHHh
Confidence 137788887765
No 38
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=5.6e-24 Score=256.11 Aligned_cols=203 Identities=22% Similarity=0.272 Sum_probs=144.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+...|++|+|++++++.+.+++..- ..+..+++++||+||||||||++|+++|+.++. .++|+.+++++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~ 100 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSE 100 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGG
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHH
Confidence 5677999999999999998877541 234567789999999999999999999999853 37889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH---hhcCCceEEEeccCCcccccchhhhHHHH-------------------HHHHHHHHH
Q 000974 454 VLSKWVGEAERQLKLLFEEA---QRNQPSIIFFDEIDGLAPVRSSKQEQIHN-------------------SIVSTLLAL 511 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a---~~~~p~VL~IDEid~L~~~r~~~~~~~~~-------------------~v~~~Ll~~ 511 (1205)
+.++++|+++. ++.+|..+ ....|+||||||||.|++.+......... .+...++..
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 99999999987 89999999 77789999999999999887554221111 122335555
Q ss_pred hh--CcccCCcEEEEccccccccccccccCCCCccc--cccCCCC--CchhhhhhhhccccccCCCCchhHHHHHhhhhh
Q 000974 512 MD--GLDSRGQVVLIGATNRVDAIDGALRRPGRFDR--EFNFPLP--GCEARAEILDIHTRKWKQPPSRELKSELAASCV 585 (1205)
Q Consensus 512 ld--~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~--~I~~~~P--~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~ 585 (1205)
|+ +....+.++|+++||.++.+|+++.|++||+. .++++.| +.++|.+|++.++.. .++.++..+.
T Consensus 180 l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~--------dl~~~a~~t~ 251 (456)
T 2c9o_A 180 LQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH--------DLDVANARPQ 251 (456)
T ss_dssp HHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH--------HHHHTC----
T ss_pred HhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH--------HHHHHHHhCC
Confidence 54 23333446666999999999999999999998 5666777 458899999877732 4688899999
Q ss_pred cccchhHHHHhHH
Q 000974 586 GYCGADLKALCTE 598 (1205)
Q Consensus 586 G~sgadI~~L~~e 598 (1205)
| |+||.++|..
T Consensus 252 g--gadl~~l~~~ 262 (456)
T 2c9o_A 252 G--GQDILSMMGQ 262 (456)
T ss_dssp -------------
T ss_pred C--hhHHHHHHhh
Confidence 9 9999888853
No 39
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.88 E-value=9.3e-24 Score=209.37 Aligned_cols=126 Identities=34% Similarity=0.681 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcc
Q 000974 890 EAEQHALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTN 969 (1205)
Q Consensus 890 ea~~~alrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 969 (1205)
++.+..++.|+.+|+.++..+..++.+++|..||++..+|+||+||++||||+||++||++|.|.++++|..||+|||+|
T Consensus 2 ~~ee~~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 81 (130)
T 3dai_A 2 MQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSN 81 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCc-ceeeechhhhhhhHhhhhh-ccChhHHHHHHHhhhc
Q 000974 970 AKAYNGNDYNG-TRIVSRGYELRDAVHGMLS-QMDPALVSYCDKIAAQ 1015 (1205)
Q Consensus 970 a~~yN~~~~~~-s~i~~~A~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 1015 (1205)
|++||+++++. +.++.+|..|++.+..+++ .++++|...|+.+++.
T Consensus 82 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~~~~ce~i~~~ 129 (130)
T 3dai_A 82 ALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQES 129 (130)
T ss_dssp HHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 99999995431 2458999999999999996 9999999999998753
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.87 E-value=2.7e-23 Score=236.64 Aligned_cols=224 Identities=19% Similarity=0.283 Sum_probs=174.5
Q ss_pred ccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhh
Q 000974 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala 724 (1205)
|......+.+.|.++.|+...++.+.+.+.. ++..+..+..+++ ..+.++||+||||||||++|++||
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~---------~~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGM---------TPSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCC---------CCCSEEEEECSSSSSHHHHHHHHH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCC---------CCCceEEEECCCCcCHHHHHHHHH
Confidence 4455567788999998888777777666432 2233444544432 123579999999999999999999
Q ss_pred hhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH----------HHHHHHHHHHHHHh
Q 000974 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA----------HEQLRAVLLTLLEE 794 (1205)
Q Consensus 725 ~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~----------~~~~~~~ll~lL~~ 794 (1205)
+++ +.+++.++++.+++.| .|.++..++.+|..|....||||||||||.+.... ..++.+.|+..|++
T Consensus 71 ~~~-~~~~i~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 71 NEC-QANFISIKGPELLTMW-FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HHT-TCEEEEECHHHHHHHH-HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred HHh-CCCEEEEEhHHHHhhh-cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 998 7899999999888776 68888999999999999999999999999998542 24567889999998
Q ss_pred cCCCCCeEEeccCCcCCccccCCCccccCC--CceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 000974 795 LPSHLPILLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPK 872 (1205)
Q Consensus 795 ~~~~~~v~vIattn~~~~~Ld~~~~~~f~~--r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~ 872 (1205)
+....+|+||+|||.+ +.|++ +.++++ ..+++|++|+.++|..||+.++... .....+++..|+.
T Consensus 149 ~~~~~~v~vi~atn~~-~~ld~--al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~----------~~~~~~~~~~la~ 215 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRP-DIIDP--AILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----------PVAKDVDLEFLAK 215 (301)
T ss_dssp SCTTSSEEEEEEESCG-GGSCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----------CBCSSCCHHHHHH
T ss_pred ccCCCCEEEEEecCCc-cccCh--HHhcCCccceEEecCCcCHHHHHHHHHHHHccC----------CCCccchHHHHHH
Confidence 8877899999999998 88888 555533 3788999999999999999888641 1223455556665
Q ss_pred CCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 873 VPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 873 ~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
. +.|+++++|+++| .+...++++
T Consensus 216 ~---~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 216 M---TNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp T---CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred H---cCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 7799999999999 676666654
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=5e-23 Score=236.61 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=171.6
Q ss_pred ecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcc
Q 000974 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (1205)
Q Consensus 649 ~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~ 728 (1205)
...+.+.|.+++|+...++.+.+.+.. ++..+..+. |. ..++.++||+||||||||++|+++|+++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~-------~~---~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFT-------GK---RTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHH---HHHCGGGSC-------TT---CCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHH---HHhCHHHHh-------CC---CCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 345678999999888777777665421 122222222 11 12246899999999999999999999987
Q ss_pred cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcC-CCCC
Q 000974 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP-SHLP 800 (1205)
Q Consensus 729 ~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~-~~~~ 800 (1205)
+.+|+.++.++++++| .|+++..++.+|..|+...||||||||||.+... ...++.+.|+..|+++. ...+
T Consensus 71 ~~~~~~i~~~~l~~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCEEEEEECCSSCCSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred CCcEEEEEhHHHHhhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 7899999999999887 7999999999999999999999999999999632 45678888999999885 3678
Q ss_pred eEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCC
Q 000974 801 ILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~ 880 (1205)
|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++... .....+.++..|+.. +.|+
T Consensus 150 v~vI~atn~~-~~ld~--al~rRf~~~i~i~~P~~~~r~~il~~~l~~~---------~~~l~~~~l~~la~~---t~G~ 214 (322)
T 1xwi_A 150 ILVLGATNIP-WVLDS--AIRRRFEKRIYIPLPEPHARAAMFKLHLGTT---------QNSLTEADFRELGRK---TDGY 214 (322)
T ss_dssp EEEEEEESCT-TTSCH--HHHHTCCEEEECCCCCHHHHHHHHHHHHTTC---------CBCCCHHHHHHHHHT---CTTC
T ss_pred EEEEEecCCc-ccCCH--HHHhhcCeEEEeCCcCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHH---cCCC
Confidence 9999999998 88988 5544544788999999999999999988531 011123445555555 7899
Q ss_pred chhhhhHhH-HHHHHHHHH
Q 000974 881 KASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 881 S~aELk~~~-ea~~~alre 898 (1205)
++++|.++| ++.+.++|+
T Consensus 215 sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 215 SGADISIIVRDALMQPVRK 233 (322)
T ss_dssp CHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 999999999 777777766
No 42
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.86 E-value=6.6e-23 Score=198.11 Aligned_cols=104 Identities=24% Similarity=0.369 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000974 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
..|+..|..||..+..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 85 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPP 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCC
Confidence 35777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhhhccCh
Q 000974 977 DYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
++.|+.+|..|++.|++.|++++.
T Consensus 86 ---~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 86 ---DSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHCCC
Confidence 778999999999999999987653
No 43
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.85 E-value=6.1e-23 Score=202.38 Aligned_cols=104 Identities=26% Similarity=0.417 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.|+.+|+.||..|..++.+++|..||++. .+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||+
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 100 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56778888999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
+ +|.|+.+|..|++.|++.|++++.+
T Consensus 101 ~---~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 101 P---GDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 8 7889999999999999999998863
No 44
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=3.8e-22 Score=226.24 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=135.5
Q ss_pred cccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHH----hhcCCceEEE
Q 000974 408 YHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEA----QRNQPSIIFF 483 (1205)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a----~~~~p~VL~I 483 (1205)
.+..+|.++|||||||||||++|++||+.++ .+|+.++++++.+.|+|.....++.+|..+ +...|+||||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4567889999999999999999999999995 678889999999999999999999999988 5678999999
Q ss_pred eccCCcccccchhh--hHHHHHHHHHHHHHhhCcc-----------cCCcEEEEccccccccccccccCCCCccccccCC
Q 000974 484 DEIDGLAPVRSSKQ--EQIHNSIVSTLLALMDGLD-----------SRGQVVLIGATNRVDAIDGALRRPGRFDREFNFP 550 (1205)
Q Consensus 484 DEid~L~~~r~~~~--~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~ 550 (1205)
||||.+++.+.... ......++..|+.+|++.. ...+++||+|||.++.||++|+|+|||+..|+
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--
Confidence 99999987543221 1234567788999988443 44679999999999999999999999998887
Q ss_pred CCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHH
Q 000974 551 LPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKA 594 (1205)
Q Consensus 551 ~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~ 594 (1205)
.|+.++|.+|++.++...... .+.++..+.||++++|..
T Consensus 184 ~P~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 184 APTREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCCHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred CcCHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 469999999999888754332 367888999999999874
No 45
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.3e-22 Score=227.81 Aligned_cols=223 Identities=19% Similarity=0.264 Sum_probs=165.0
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000974 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+.+.|.+++|+.+..+++.+.+. -++..+..+..+++ . .+.|+||+||||||||+||++||.++ +.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l-----~----~~~GvlL~Gp~GtGKTtLakala~~~-~~ 70 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGL-----V----TPAGVLLAGPPGCGKTLLAKAVANES-GL 70 (274)
T ss_dssp --------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTC-----C----CCSEEEEESSTTSCHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCC-----C----CCCeEEEECCCCCcHHHHHHHHHHHc-CC
Confidence 467889999999888777766531 12333445555442 2 24679999999999999999999998 67
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH-------HHHHHHHHHHHHHhcCCCCCeEE
Q 000974 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-------HEQLRAVLLTLLEELPSHLPILL 803 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~-------~~~~~~~ll~lL~~~~~~~~v~v 803 (1205)
+++.++..++...| .|+.+..++.+|+.++...|||+||||++.++... ..++.+.++..|++......+++
T Consensus 71 ~~i~i~g~~l~~~~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 71 NFISVKGPELLNMY-VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp EEEEEETTTTCSST-THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred CEEEEEcHHHHhhh-hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 89999988888766 68888999999999988899999999999976321 12456778888888888889999
Q ss_pred eccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCc
Q 000974 804 LGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPK 881 (1205)
Q Consensus 804 Iattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S 881 (1205)
+|+||+| +.||+ +.++++| ..++|++|+.++|.+||+.++... .......++++..|+... .+.||+
T Consensus 150 ia~tn~p-~~LD~--al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~-------~~~~~~~~~~~~~la~~~-~~~g~s 218 (274)
T 2x8a_A 150 MAATNRP-DIIDP--AILRPGRLDKTLFVGLPPPADRLAILKTITKNG-------TKPPLDADVNLEAIAGDL-RCDCYT 218 (274)
T ss_dssp EEEESCG-GGSCH--HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT-------BTTBBCTTCCHHHHHTCS-GGGSCC
T ss_pred EeecCCh-hhCCH--hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc-------cCCCCccccCHHHHHHhh-ccCCcC
Confidence 9999998 89998 6666443 888899999999999999887531 111223456666676552 245999
Q ss_pred hhhhhHhH-HHHHHHHHH
Q 000974 882 ASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 882 ~aELk~~~-ea~~~alre 898 (1205)
++||.++| +|...++++
T Consensus 219 gadl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 219 GADLSALVREASICALRQ 236 (274)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 787777765
No 46
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.85 E-value=1e-22 Score=207.20 Aligned_cols=104 Identities=25% Similarity=0.375 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.|+.+|+.||..|..++.+++|..||++. ++|+||+||++||||+||++||+++.|.++++|.+||+|||+||++||+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 111 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 67788899999999999999999999988 7999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
+ ++.|+.+|..|++.|++.|++++.+
T Consensus 112 ~---~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 112 P---TDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp T---TSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHCCch
Confidence 9 7789999999999999999999875
No 47
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-22 Score=199.10 Aligned_cols=104 Identities=26% Similarity=0.402 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.|+..|+.||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~- 85 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK- 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT-
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC-
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeechhhhhhhHhhhhhccChh
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
++.++.+|..|++.|+.+|.++...
T Consensus 86 --~s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 86 --DTIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp --TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999998866553
No 48
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-22 Score=198.41 Aligned_cols=120 Identities=38% Similarity=0.744 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccccc
Q 000974 893 QHALRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKA 972 (1205)
Q Consensus 893 ~~alrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 972 (1205)
...+++|+..|+.||..|..++.+++|..| +|+||+||++||||+||++||++|.|.|+.+|..||+|||+||++
T Consensus 7 ~~~~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 7 GNTLRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp THHHHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCc-ceeeechhhhhhhHhhhh-hccChhHHHHHHHhhhcCC
Q 000974 973 YNGNDYNG-TRIVSRGYELRDAVHGML-SQMDPALVSYCDKIAAQGG 1017 (1205)
Q Consensus 973 yN~~~~~~-s~i~~~A~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1017 (1205)
||+++++. ..|+.+|..|++.|...+ ..+.+.|...|+.+++...
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~~f~~~~~~i~~~~~ 128 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKESGP 128 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTTSC
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995442 246799999999999999 5999999999999987643
No 49
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-22 Score=196.21 Aligned_cols=103 Identities=27% Similarity=0.401 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 896 LRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 896 lrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
...|+..|..||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||+
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhcc
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
+ +|.|+.+|..|++.|.+++...
T Consensus 86 ~---~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 86 P---ETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp S---SSSHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHH
Confidence 9 7789999999999999998744
No 50
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-22 Score=198.05 Aligned_cols=103 Identities=18% Similarity=0.336 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhhhccc------cccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccc
Q 000974 898 RLRMCLRDVCNRMLYDK------RFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAK 971 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k------~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 971 (1205)
.|...|..||+.+..++ .+++|..||+...+|+||+||++||||+||++||+++.|.++.+|.+||+|||+||+
T Consensus 13 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 92 (123)
T 2dat_A 13 KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQ 92 (123)
T ss_dssp HHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34555677777777765 689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceeeechhhhhhhHhhhhhccCh
Q 000974 972 AYNGNDYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 972 ~yN~~~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
+||++ ++.|+.+|..|++.|+..++++|.
T Consensus 93 ~yN~~---~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 93 TFNLE---GSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHSCT---TSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHCCC---CCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999 778999999999999999998885
No 51
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.84 E-value=1.4e-22 Score=199.06 Aligned_cols=107 Identities=27% Similarity=0.463 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.|+..|..||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|..||+|||+||+.||++.
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNK 89 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhHH
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQMDPALV 1006 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 1006 (1205)
++.|+.+|..|++.|++.|+++.+++.
T Consensus 90 --~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 90 --RSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp --TSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998887753
No 52
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.84 E-value=2.1e-22 Score=196.94 Aligned_cols=100 Identities=23% Similarity=0.463 Sum_probs=95.2
Q ss_pred HHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCc
Q 000974 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNG 980 (1205)
Q Consensus 901 ~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~ 980 (1205)
..|..||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.|+.+|.+||+|||+||++||++ +
T Consensus 16 ~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~---~ 92 (121)
T 1e6i_A 16 AAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE---N 92 (121)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT---T
T ss_pred HHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---C
Confidence 3567888999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred ceeeechhhhhhhHhhhhhccCh
Q 000974 981 TRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 981 s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
+.|+.+|..|++.|++.+++++.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHHHHHHccc
Confidence 78999999999999999999864
No 53
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=2.3e-22 Score=231.18 Aligned_cols=223 Identities=17% Similarity=0.226 Sum_probs=170.9
Q ss_pred ceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhh
Q 000974 647 ATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 647 ~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~ 726 (1205)
.....+.+.|.++.|+...++.+.+.+.. ++..+..+.. ....+.++||+||||||||++|++||++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~---~~~~~~~~~~----------~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKG----------NRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHH---HHHCGGGCCT----------TCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHH---HHhCHHHHhc----------CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34456778899998888777777665421 1111222211 1122468999999999999999999999
Q ss_pred cccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH-------HHHHHHHHHHHHHhcC-CC
Q 000974 727 LEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-------HEQLRAVLLTLLEELP-SH 798 (1205)
Q Consensus 727 l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~-------~~~~~~~ll~lL~~~~-~~ 798 (1205)
+ +.+|+.++++.+++.| .|+++..++.+|..|+...||||||||||.+.... ..++.+.|+..|+++. ..
T Consensus 75 ~-~~~~~~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 75 A-NSTFFSVSSSDLVSKW-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp H-TCEEEEEEHHHHHTTT-GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred H-CCCEEEEchHHHhhcc-cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 8 8899999999999887 79999999999999999999999999999997432 3467788899999884 56
Q ss_pred CCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000974 799 LPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 799 ~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
.+|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++... .......++..|+.. +.
T Consensus 153 ~~v~vi~atn~~-~~ld~--al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~---------~~~~~~~~l~~la~~---t~ 217 (322)
T 3eie_A 153 QGVLVLGATNIP-WQLDS--AIRRRFERRIYIPLPDLAARTTMFEINVGDT---------PCVLTKEDYRTLGAM---TE 217 (322)
T ss_dssp CCEEEEEEESCG-GGSCH--HHHHHCCEEEECCCCCHHHHHHHHHHHHTTC---------CCCCCHHHHHHHHHT---TT
T ss_pred CceEEEEecCCh-hhCCH--HHHcccCeEEEeCCCCHHHHHHHHHHHhccC---------CCCCCHHHHHHHHHH---cC
Confidence 789999999998 88988 4444444788999999999999999988531 011123345555555 78
Q ss_pred CCchhhhhHhH-HHHHHHHHHH
Q 000974 879 GPKASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alrel 899 (1205)
|+++++|.++| ++...+++++
T Consensus 218 g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 218 GYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp TCCHHHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 7777777764
No 54
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.84 E-value=2.7e-22 Score=200.35 Aligned_cols=109 Identities=28% Similarity=0.402 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.|+..|..||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++++|.+||+|||+||+.||+++
T Consensus 21 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 100 (135)
T 3mb3_A 21 AWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSK 100 (135)
T ss_dssp THHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 47778889999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhHHHH
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQMDPALVSY 1008 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ 1008 (1205)
++.|+.+|..|++.|+..|..+.+++...
T Consensus 101 --~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 129 (135)
T 3mb3_A 101 --RSRIYSMSLRLSAFFEEHISSVLSDYKSA 129 (135)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999887776543
No 55
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.83 E-value=3.7e-22 Score=194.47 Aligned_cols=98 Identities=23% Similarity=0.414 Sum_probs=93.0
Q ss_pred HHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCc
Q 000974 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNG 980 (1205)
Q Consensus 901 ~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~ 980 (1205)
..|..||..|..++.+++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||+|||+||+.||++ +
T Consensus 16 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~---~ 92 (117)
T 3g0l_A 16 ALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNED---D 92 (117)
T ss_dssp HHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCS---S
T ss_pred HHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC---C
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred ceeeechhhhhhhHhhhhhcc
Q 000974 981 TRIVSRGYELRDAVHGMLSQM 1001 (1205)
Q Consensus 981 s~i~~~A~~l~~~~~~~~~~~ 1001 (1205)
+.|+.+|..|++.|++.|+++
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~ 113 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDT 113 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998754
No 56
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.83 E-value=5.8e-22 Score=196.21 Aligned_cols=99 Identities=26% Similarity=0.450 Sum_probs=92.1
Q ss_pred HHHHHhhhhhcccc---ccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000974 902 CLRDVCNRMLYDKR---FSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 902 ~lr~il~~l~~~k~---~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
.|..||..|..++. +++|..||++. ++|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++
T Consensus 26 ~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 105 (130)
T 2ouo_A 26 CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105 (130)
T ss_dssp HHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 35678888887764 79999999986 59999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeechhhhhhhHhhhhhccCh
Q 000974 977 DYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
++.|+.+|..|++.|+..|++++.
T Consensus 106 ---~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 106 ---DHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHCCC
Confidence 778999999999999999999986
No 57
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.83 E-value=5.1e-22 Score=193.17 Aligned_cols=100 Identities=25% Similarity=0.434 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.+...|..+|..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++++|..||+|||+||..||++
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~- 94 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGE- 94 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC-
Confidence 4556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhhhc
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~ 1000 (1205)
++.|+.+|..|++.|++.|.+
T Consensus 95 --~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 95 --SSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHHHHhh
Confidence 778999999999999998864
No 58
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.83 E-value=8.1e-22 Score=201.16 Aligned_cols=117 Identities=26% Similarity=0.452 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhhh-hhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 897 RRLRMCLRDVCNR-MLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 897 relr~~lr~il~~-l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
..|...|..++.+ +..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|..||+|||+||++||+
T Consensus 28 ~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 28 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3556666666654 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccChhHHHHHHHhhhcC
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMDPALVSYCDKIAAQG 1016 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1016 (1205)
+ ++.|+.+|..|++.|...|.+++..+...+..+....
T Consensus 108 ~---~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~~~ 145 (158)
T 3uv4_A 108 P---ESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAK 145 (158)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHC
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7789999999999999999999999888887765543
No 59
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.83 E-value=6e-22 Score=194.81 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhhhhc------cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccc
Q 000974 898 RLRMCLRDVCNRMLY------DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAK 971 (1205)
Q Consensus 898 elr~~lr~il~~l~~------~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 971 (1205)
.|+..|..|+..+.. ++.+++|..||+...+|+||+||++||||+||++||++|.|.++++|..||+|||+||+
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 94 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNAC 94 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 355566677777766 56679999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceeeechhhhhhhHhhhhhccCh
Q 000974 972 AYNGNDYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 972 ~yN~~~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
+||++ ++.|+.+|..|++.|++.|+++..
T Consensus 95 ~yN~~---~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 95 TYNEP---ESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHSCT---TSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCC---CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998 788999999999999999988764
No 60
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.83 E-value=8e-22 Score=193.45 Aligned_cols=100 Identities=27% Similarity=0.439 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.++.+|..+|..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++++|..||+|||+||..||++
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~- 91 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP- 91 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT-
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCC-
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhhhc
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~ 1000 (1205)
++.|+.+|..|++.|.+.|.+
T Consensus 92 --~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 92 --DTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp --TSHHHHHHHHHHHHHHHHTCH
T ss_pred --CCHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999873
No 61
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=6.8e-22 Score=230.22 Aligned_cols=220 Identities=17% Similarity=0.240 Sum_probs=162.3
Q ss_pred ecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcc
Q 000974 649 VHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELE 728 (1205)
Q Consensus 649 ~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~ 728 (1205)
...+.+.|.++.|+...++.+.+.+.. ++..+..+.. + ...+.++||+||||||||++|++||+++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~------~----~~~~~~iLL~GppGtGKT~la~ala~~~- 108 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKG------N----RKPTSGILLYGPPGTGKSYLAKAVATEA- 108 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHH---HHHCGGGGCS------S----CCCCCCEEEECSTTSCHHHHHHHHHHHH-
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHH---HHhCHHHHhc------C----CCCCceEEEECCCCCcHHHHHHHHHHHh-
Confidence 345677899988887776666665321 1122222221 1 1224589999999999999999999999
Q ss_pred cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcCC-CCC
Q 000974 729 KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS-HLP 800 (1205)
Q Consensus 729 ~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~~-~~~ 800 (1205)
+.+|+.++++.++..| .|.++..++.+|..|+...||||||||||.+... ...++.+.|+.+|+++.. ..+
T Consensus 109 ~~~~~~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKW-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp TCEEEEEEHHHHHSCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred CCCEEEeeHHHHhhhh-cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 8999999999999887 7899999999999999999999999999999743 345678889999998854 578
Q ss_pred eEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCC
Q 000974 801 ILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~ 880 (1205)
|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++... .......++..|+.. +.|+
T Consensus 188 v~vI~atn~~-~~ld~--al~rRf~~~i~i~~P~~~~r~~il~~~l~~~---------~~~~~~~~l~~la~~---t~G~ 252 (355)
T 2qp9_X 188 VLVLGATNIP-WQLDS--AIRRRFERRIYIPLPDLAARTTMFEINVGDT---------PSVLTKEDYRTLGAM---TEGY 252 (355)
T ss_dssp EEEEEEESCG-GGSCH--HHHHTCCEEEECCCCCHHHHHHHHHHHHTTS---------CBCCCHHHHHHHHHH---TTTC
T ss_pred eEEEeecCCc-ccCCH--HHHcccCEEEEeCCcCHHHHHHHHHHHHhhC---------CCCCCHHHHHHHHHH---cCCC
Confidence 9999999998 88888 4444445788899999999999999988531 001123345555554 7899
Q ss_pred chhhhhHhH-HHHHHHHHH
Q 000974 881 KASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 881 S~aELk~~~-ea~~~alre 898 (1205)
++++|.++| ++.+.++++
T Consensus 253 sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 253 SGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 999999999 777777766
No 62
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.82 E-value=9.7e-22 Score=196.39 Aligned_cols=107 Identities=30% Similarity=0.458 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 896 LRRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 896 lrelr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
+..|+..|+.+|..+..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||+.||+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccChhH
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMDPAL 1005 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 1005 (1205)
+ ++.|+.+|..|++.|.+.|++....+
T Consensus 91 ~---~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 91 R---DTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp T---TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 77899999999999999999775543
No 63
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.82 E-value=6.6e-22 Score=195.69 Aligned_cols=103 Identities=18% Similarity=0.363 Sum_probs=93.0
Q ss_pred HHHHHHHHhhhhhccc-------cccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccc
Q 000974 899 LRMCLRDVCNRMLYDK-------RFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAK 971 (1205)
Q Consensus 899 lr~~lr~il~~l~~~k-------~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 971 (1205)
|+..|..||..++.++ .+++|..||+...+|+||+||++||||+||++||++|.|.|+.+|.+||+|||+||+
T Consensus 12 l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 91 (129)
T 2grc_A 12 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQ 91 (129)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4445666777776554 689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 972 AYNGNDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 972 ~yN~~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
+||++ +|.|+.+|..|++.|+..|++++..
T Consensus 92 ~yN~~---~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 92 TFNLE---GSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHSCT---TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCC---CCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999 7889999999999999999877654
No 64
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.82 E-value=1.1e-21 Score=202.07 Aligned_cols=105 Identities=21% Similarity=0.365 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccccccc
Q 000974 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYN 974 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN 974 (1205)
+.|+..|..||..|+.++.+++|..||++. .+|+||+||++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 99 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 478888999999999999999999999976 699999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 975 GNDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 975 ~~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
++ ++.|+.+|..|++.|++.|.+++..
T Consensus 100 ~~---~s~i~~~A~~L~~~f~~~l~~~~~~ 126 (166)
T 3fkm_X 100 TS---NSVVAITGKNIETYFNNQLIVMGYN 126 (166)
T ss_dssp CT---TSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHHcccc
Confidence 99 7789999999999999999988843
No 65
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.82 E-value=7.5e-22 Score=194.79 Aligned_cols=109 Identities=21% Similarity=0.329 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhhhhccc------cccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccc
Q 000974 897 RRLRMCLRDVCNRMLYDK------RFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNA 970 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k------~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na 970 (1205)
..|+..|+.+++.+..++ .+++|..||++..+|+||+||++||||+||++||++|.|.++++|.+||+|||+||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356667777777777654 48999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeechhhhhhhHhhhhhccChhHHHH
Q 000974 971 KAYNGNDYNGTRIVSRGYELRDAVHGMLSQMDPALVSY 1008 (1205)
Q Consensus 971 ~~yN~~~~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ 1008 (1205)
+.||++ +|.|+.+|..|++.|++.++++.+.+...
T Consensus 88 ~~yN~~---~s~~~~~A~~L~~~f~~~~~~~~~~l~~i 122 (126)
T 3mqm_A 88 EKYYGR---KSPVGRDVCRLRKAYYNARHEASAQIDEI 122 (126)
T ss_dssp HHHHCT---TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 77899999999999999999887765543
No 66
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.82 E-value=6.2e-22 Score=193.80 Aligned_cols=101 Identities=27% Similarity=0.439 Sum_probs=93.5
Q ss_pred HHHHHHhhhhhcccc---ccccccccCCCC--CccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 901 MCLRDVCNRMLYDKR---FSAFHYPVTDED--APNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 901 ~~lr~il~~l~~~k~---~~~F~~Pv~~~~--~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
..|..||..+..++. +|+|..||++.. +|+||+||++||||+||++||++|.|.++++|..||+|||+||++||+
T Consensus 12 ~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (120)
T 3jvl_A 12 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNP 91 (120)
T ss_dssp HHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 345678888887776 899999999986 999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
+ ++.|+.+|..|++.|++.|++++.+
T Consensus 92 ~---~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 92 P---DHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp T---TSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 9 7789999999999999999999875
No 67
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.82 E-value=7.6e-22 Score=192.96 Aligned_cols=104 Identities=24% Similarity=0.452 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhhhcccc------ccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccc
Q 000974 898 RLRMCLRDVCNRMLYDKR------FSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAK 971 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~------~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 971 (1205)
.|+..|+.++..+...+. +++|..||+...+|+||+||++||||+||++||++|.|.++.+|..||+|||+||+
T Consensus 8 ~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 87 (120)
T 3ljw_A 8 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 87 (120)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 455666777777776665 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 972 AYNGNDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 972 ~yN~~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
.||++ ++.|+.+|..|++.|++.|++++..
T Consensus 88 ~yN~~---~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 88 TYNEP---GSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHSCT---TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCC---CCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999 7889999999999999999987653
No 68
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.82 E-value=7.8e-22 Score=192.77 Aligned_cols=103 Identities=27% Similarity=0.441 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhhhhc-cccccccccccCCC--CCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhccccccc
Q 000974 898 RLRMCLRDVCNRMLY-DKRFSAFHYPVTDE--DAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYN 974 (1205)
Q Consensus 898 elr~~lr~il~~l~~-~k~~~~F~~Pv~~~--~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN 974 (1205)
+++..|..+|..+.. ++.+++|..||++. ++|+||++|++||||+||++||++|.|.++.+|..||+|||+||.+||
T Consensus 11 el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (119)
T 3p1f_A 11 ELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYN 90 (119)
T ss_dssp HHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 566677788888776 67999999999998 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeechhhhhhhHhhhhhccCh
Q 000974 975 GNDYNGTRIVSRGYELRDAVHGMLSQMDP 1003 (1205)
Q Consensus 975 ~~~~~~s~i~~~A~~l~~~~~~~~~~~~~ 1003 (1205)
++ +|.|+.+|..|++.|++.|..+..
T Consensus 91 ~~---~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 91 RK---TSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp CT---TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 778999999999999999886543
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.82 E-value=5e-21 Score=229.16 Aligned_cols=215 Identities=19% Similarity=0.251 Sum_probs=163.3
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000974 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
+.+.|.++.|+...++++.+.+..+ ..+..+.+++ .. .+.++||+||||||||++|++|+.++ +.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l----~~~~~~~~~g-----~~----~p~gvLL~GppGtGKT~Laraia~~~-~~~ 76 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFL----KDPSKFNRIG-----AR----MPKGILLVGPPGTGKTLLARAVAGEA-NVP 76 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHH----HCTHHHHTTT-----CC----CCSEEEEECCTTSSHHHHHHHHHHHH-TCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHh----hChHHHhhcC-----CC----CCCeEEEECCCCCCHHHHHHHHHHHc-CCC
Confidence 3467778877777666666554322 1233444443 22 24689999999999999999999998 899
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCCe
Q 000974 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~v 801 (1205)
|+.++++++...+ .|..+..++.+|..|+...||||||||||.+... ....+++.|+..|+++....+|
T Consensus 77 f~~is~~~~~~~~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 77 FFHISGSDFVELF-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp EEEEEGGGTTTCC-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred eeeCCHHHHHHHH-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 9999999988765 7888889999999999999999999999998642 1235677788888887777799
Q ss_pred EEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000974 802 LLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+||+|||.+ +.||+ +.++++| .++.|++|+.++|..||+.++... +...++++..|+.. ++|
T Consensus 156 iVIaaTn~~-~~Ld~--allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~----------~l~~~v~l~~la~~---t~G 219 (476)
T 2ce7_A 156 IVMAATNRP-DILDP--ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK----------PLAEDVNLEIIAKR---TPG 219 (476)
T ss_dssp EEEEEESCG-GGSCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----------CBCTTCCHHHHHHT---CTT
T ss_pred EEEEecCCh-hhhch--hhcccCcceeEeecCCCCHHHHHHHHHHHHHhC----------CCcchhhHHHHHHh---cCC
Confidence 999999998 88888 5555333 688899999999999999887531 22334455555544 889
Q ss_pred CchhhhhHhH-HHHHHHHH
Q 000974 880 PKASELKAKV-EAEQHALR 897 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~alr 897 (1205)
+++++|.++| ++...+.+
T Consensus 220 ~sgadL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 220 FVGADLENLVNEAALLAAR 238 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9999999999 66665543
No 70
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=8.4e-22 Score=236.09 Aligned_cols=222 Identities=17% Similarity=0.259 Sum_probs=160.5
Q ss_pred eecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhc
Q 000974 648 TVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 648 ~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
....+.+.|.++.|+....+.+.+.+.. ++..+..|... ..++.++||+||||||||++|++||+++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~~~----------~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGK----------RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTH---HHHCTTTTSGG----------GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHhhcc----------CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3446678899998888777777665421 11112222110 1124689999999999999999999998
Q ss_pred ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcC-CCC
Q 000974 728 EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP-SHL 799 (1205)
Q Consensus 728 ~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~-~~~ 799 (1205)
.+.+|+.++++.+++.| .|.++..++.+|..|+...||||||||||.++.. ...++.+.|+..|+++. ...
T Consensus 192 ~~~~~~~v~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 192 NNSTFFSISSSDLVSKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp CSSEEEEECCC----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred CCCCEEEEeHHHHHhhh-cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 77899999999999887 7888999999999999999999999999999632 34567777777777764 357
Q ss_pred CeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000974 800 PILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 800 ~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++... .......++..|+.. +.|
T Consensus 271 ~v~vI~atn~~-~~ld~--al~rRf~~~i~i~~P~~~~r~~il~~~l~~~---------~~~l~~~~l~~la~~---t~G 335 (444)
T 2zan_A 271 GILVLGATNIP-WVLDS--AIRRRFEKRIYIPLPEAHARAAMFRLHLGST---------QNSLTEADFQELGRK---TDG 335 (444)
T ss_dssp SCEEEEEESCG-GGSCH--HHHTTCCEEEECCCCCHHHHHHHHHHHHTTS---------CEECCHHHHHHHHHH---TTT
T ss_pred CEEEEecCCCc-cccCH--HHHhhcceEEEeCCcCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHH---cCC
Confidence 89999999998 88988 4444444788999999999999999988531 001123345555544 789
Q ss_pred CchhhhhHhH-HHHHHHHHH
Q 000974 880 PKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~alre 898 (1205)
+++++|.++| ++.+.++|+
T Consensus 336 ~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 336 YSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CCHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 777777766
No 71
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.2e-21 Score=193.30 Aligned_cols=100 Identities=26% Similarity=0.437 Sum_probs=93.5
Q ss_pred HHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccC--CceeeeccccccchhhhcccccccCCCC
Q 000974 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS--GHYVTCSAFLQDVDLIVTNAKAYNGNDY 978 (1205)
Q Consensus 901 ~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~--~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~ 978 (1205)
..|..||..|+.++.+++|..||+. .+|+||+||++||||+||++||++ +.|.++.+|.+||+|||+||++||++
T Consensus 23 ~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~-- 99 (135)
T 2yyn_A 23 RKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP-- 99 (135)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT--
T ss_pred HHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC--
Confidence 4567899999999999999999998 799999999999999999999998 59999999999999999999999999
Q ss_pred CcceeeechhhhhhhHhhhhhccChh
Q 000974 979 NGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 979 ~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
++.|+.+|..|++.|++.|+++.++
T Consensus 100 -~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 100 -DSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhccc
Confidence 7789999999999999999887664
No 72
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.81 E-value=2.3e-21 Score=191.72 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=83.3
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhh
Q 000974 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRD 992 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~ 992 (1205)
++.+++|..||+...+|+||+||++||||+||++||+++.|.|+++|..||+|||+||++||++ +|.|+.+|..|++
T Consensus 38 ~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~---~s~i~~~A~~L~~ 114 (130)
T 3k2j_A 38 QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVP---NSAIYKRVLKLQQ 114 (130)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT---TSHHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHH
Confidence 4459999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred hHhhhhhccCh
Q 000974 993 AVHGMLSQMDP 1003 (1205)
Q Consensus 993 ~~~~~~~~~~~ 1003 (1205)
.|++.|+++..
T Consensus 115 ~f~~~~~~l~~ 125 (130)
T 3k2j_A 115 VMQAKKKELAR 125 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 73
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.80 E-value=8.7e-21 Score=228.88 Aligned_cols=219 Identities=18% Similarity=0.266 Sum_probs=170.4
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000974 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
..+.|.++.|+...++.+.+.+... +..+..|..++. . .+.++||+||||||||++|++|++.+ +.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~---l~~~~~~~~~g~-----~----~~~~vLL~GppGtGKT~lAraia~~~-~~~ 265 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELP---LRHPALFKAIGV-----K----PPRGILLYGPPGTGKTLIARAVANET-GAF 265 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHH---HHCHHHHHHHTC-----C----CCCEEEEECSTTSSHHHHHHHHHHHC-SSE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHH---hhCHHHHHhcCC-----C----CCCcEEEECcCCCCHHHHHHHHHHHh-CCC
Confidence 3467888888887877777765432 233445554432 2 23589999999999999999999998 899
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHH-------hHHHHHHHHHHHHHHhcCCCCCeEEe
Q 000974 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE-------NAHEQLRAVLLTLLEELPSHLPILLL 804 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~-------~~~~~~~~~ll~lL~~~~~~~~v~vI 804 (1205)
|+.++++.+.+.+ .|+.+..++.+|..|....||||||||||.+.. .....+.+.|+.+|+.+....+++||
T Consensus 266 fv~vn~~~l~~~~-~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 266 FFLINGPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp EEEEEHHHHHTSC-TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred EEEEEchHhhhhh-cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 9999999999887 689999999999999999999999999999974 24567888899999999888899999
Q ss_pred ccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhh
Q 000974 805 GSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASE 884 (1205)
Q Consensus 805 attn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aE 884 (1205)
+|||.+ +.|++.+....+++.+++|++|+.++|..||+.++... ......++..++.. +.|+++++
T Consensus 345 aaTn~~-~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----------~l~~~~~l~~la~~---t~g~s~~d 410 (489)
T 3hu3_A 345 AATNRP-NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----------KLADDVDLEQVANE---THGHVGAD 410 (489)
T ss_dssp EEESCG-GGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----------CBCTTCCHHHHHHT---CTTCCHHH
T ss_pred EecCCc-cccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----------CCcchhhHHHHHHH---ccCCcHHH
Confidence 999998 88888333211333789999999999999999887532 22334445555554 78999999
Q ss_pred hhHhH-HHHHHHHHH
Q 000974 885 LKAKV-EAEQHALRR 898 (1205)
Q Consensus 885 Lk~~~-ea~~~alre 898 (1205)
|..+| ++...++++
T Consensus 411 L~~L~~~A~~~a~r~ 425 (489)
T 3hu3_A 411 LAALCSEAALQAIRK 425 (489)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 99998 666666554
No 74
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.80 E-value=3.2e-21 Score=187.47 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=89.2
Q ss_pred HHHHHhhhhhcc------ccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccC
Q 000974 902 CLRDVCNRMLYD------KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 902 ~lr~il~~l~~~------k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.|..|+..+..+ +.+++|..||+...+|+||+||++||||+||++||++|.|.++++|..||+|||+||+.||+
T Consensus 9 ~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 88 (116)
T 3iu5_A 9 VCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYK 88 (116)
T ss_dssp HHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 345676777665 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccC
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMD 1002 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~ 1002 (1205)
+ +|.|+.+|..|++.|++.++++.
T Consensus 89 ~---~s~~~~~A~~L~~~f~~~~~~l~ 112 (116)
T 3iu5_A 89 P---DSPEYKAACKLWDLYLRTRNEFV 112 (116)
T ss_dssp T---TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 77899999999999999988653
No 75
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=5e-20 Score=209.78 Aligned_cols=218 Identities=20% Similarity=0.221 Sum_probs=174.0
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCC---CcceeeecCCCChhHHHHHHHHhhhhhcCC--eEEEEEecchhh
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITP---PRGVLLCGPPGTGKTLIARALACAASKAGQ--KVSFYMRKGADV 454 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l~~~~~--~~~~~~i~~~~l 454 (1205)
+|+|++.+++.|.+++..+. .+..+..+|+.. ..++||+||||||||++|+++|+.+...+. ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988743 455565555543 457999999999999999999999876542 346888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc---
Q 000974 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--- 531 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~--- 531 (1205)
.+.++|.....+..+|..+. ++||||||+|.|+..+.. ......++..|+..|+. ...+++||+++|...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHH
Confidence 99899988888888888873 569999999999865432 22345678889998884 345678888887653
Q ss_pred --cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhh-------cccchhHHHHhHHHHHH
Q 000974 532 --AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCV-------GYCGADLKALCTEAAIR 602 (1205)
Q Consensus 532 --~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~-------G~sgadI~~L~~eA~~~ 602 (1205)
.++++|++ ||+..|.|+.|+.+++..|++.++...+..++.+.+..++.... ..+++++.+++..|+..
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 25799998 99999999999999999999999998888888888888877633 23578999999999887
Q ss_pred HHHHh
Q 000974 603 AFREK 607 (1205)
Q Consensus 603 a~rr~ 607 (1205)
+..+.
T Consensus 262 ~~~r~ 266 (309)
T 3syl_A 262 QANRL 266 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 76
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=4.2e-20 Score=208.06 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=161.4
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000974 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+.+.|.++.|+...++.+...+.. ++..+..+..+++ . .+.++||+||||||||++|+++|+.+ +.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~-----~----~~~~~ll~G~~GtGKT~la~~la~~~-~~ 77 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGI-----E----PPKGILLYGPPGTGKTLLAKAVATET-NA 77 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCC-----C----CCSEEEEESSSSSSHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCC-----C----CCCeEEEECCCCCcHHHHHHHHHHHh-CC
Confidence 4567788888888887777766432 1222334444332 2 23579999999999999999999998 88
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHH----------hHHHHHHHHHHHHHHhcCCCCC
Q 000974 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE----------NAHEQLRAVLLTLLEELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~----------~~~~~~~~~ll~lL~~~~~~~~ 800 (1205)
+++.++...++..+ .|..+..+..+|..+....|+||||||||.+.. ......+..++..++.+....+
T Consensus 78 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 78 TFIRVVGSELVKKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp EEEEEEGGGGCCCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred CEEEEehHHHHHhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999988876 788899999999999999999999999999962 2223444445555565666778
Q ss_pred eEEeccCCcCCccccCCCccccCCC--ceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000974 801 ILLLGSSSVPLAEVEGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
++||+|||.+ +.|++ +.++++| .+++|++|+.++|..||+.++... ......++..|+.. +.
T Consensus 157 ~~vI~ttn~~-~~l~~--~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----------~~~~~~~~~~l~~~---~~ 220 (285)
T 3h4m_A 157 VKIIGATNRP-DILDP--AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----------NLAEDVNLEEIAKM---TE 220 (285)
T ss_dssp EEEEEECSCG-GGBCH--HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----------CBCTTCCHHHHHHH---CT
T ss_pred EEEEEeCCCc-hhcCH--HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----------CCCCcCCHHHHHHH---cC
Confidence 9999999998 88887 4444323 688999999999999999887531 12233444455444 77
Q ss_pred CCchhhhhHhH-HHHHHHHHH
Q 000974 879 GPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~alre 898 (1205)
|+++++|..++ .+...+++.
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 89999999998 666666544
No 77
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.78 E-value=2.1e-20 Score=190.17 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=85.3
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000974 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.+..+++|..||+...+|+||+||++||||+||++||++|.|.++++|..||+|||+||++||++ ++.|+.+|..|+
T Consensus 45 ~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~---~s~i~~~A~~L~ 121 (150)
T 3tlp_A 45 GRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEE---GSQVYNDAHILE 121 (150)
T ss_dssp CCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT---TSHHHHHHHHHH
T ss_pred CCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999 788999999999
Q ss_pred hhHhhhhhccChh
Q 000974 992 DAVHGMLSQMDPA 1004 (1205)
Q Consensus 992 ~~~~~~~~~~~~~ 1004 (1205)
+.|++.|+++.+.
T Consensus 122 ~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 122 KLLKEKRKELGPL 134 (150)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHccCC
Confidence 9999999987754
No 78
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=7.5e-20 Score=203.09 Aligned_cols=214 Identities=16% Similarity=0.223 Sum_probs=153.3
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000974 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
+...|.++.|+....+.+...+..+ ..+..+.+++ .. .+.++||+||||||||++|++|++.+ +.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~----~~~~~~~~~~-----~~----~~~~vll~G~~GtGKT~la~~la~~~-~~~ 72 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYL----REPSRFQKLG-----GK----IPKGVLMVGPPGTGKTLLAKAIAGEA-KVP 72 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHH----HCGGGC----------C----CCCEEEEECCTTSCHHHHHHHHHHHH-TCC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHH----hCHHHHHHcC-----CC----CCCeEEEECcCCCCHHHHHHHHHHHc-CCC
Confidence 4456777776666555554433221 1122233322 22 24579999999999999999999998 788
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCCe
Q 000974 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~v 801 (1205)
++.++.+.+...+ .|..+..++.+|..|....||||||||||.+... .....++.++..|+.+....++
T Consensus 73 ~~~i~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 73 FFTISGSDFVEMF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp EEEECSCSSTTSC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred EEEEeHHHHHHHh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 9999998887765 6888899999999999889999999999998742 1235677788888888777889
Q ss_pred EEeccCCcCCccccCCCccccCC--CceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000974 802 LLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~--r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+||+|||.+ +.|++ +.++++ ..+++|++|+.++|..||+.++... ....+.++..++ ..++|
T Consensus 152 ~vI~~tn~~-~~l~~--~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~----------~l~~~~~~~~la---~~~~G 215 (257)
T 1lv7_A 152 IVIAATNRP-DVLDP--ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV----------PLAPDIDAAIIA---RGTPG 215 (257)
T ss_dssp EEEEEESCT-TTSCG--GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----------CBCTTCCHHHHH---HTCTT
T ss_pred EEEEeeCCc-hhCCH--HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC----------CCCccccHHHHH---HHcCC
Confidence 999999998 78887 443322 2688899999999999998887531 112222233333 33778
Q ss_pred CchhhhhHhH-HHHHHHH
Q 000974 880 PKASELKAKV-EAEQHAL 896 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~al 896 (1205)
+++++|.+++ .+...+.
T Consensus 216 ~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAA 233 (257)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 9999999988 5555554
No 79
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.78 E-value=2.1e-20 Score=195.35 Aligned_cols=99 Identities=28% Similarity=0.391 Sum_probs=93.7
Q ss_pred HHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCc
Q 000974 901 MCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNG 980 (1205)
Q Consensus 901 ~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~ 980 (1205)
..|+.+|..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++ +
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~---~ 151 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPS---D 151 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCT---T
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC---C
Confidence 3456788889999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred ceeeechhhhhhhHhhhhhccC
Q 000974 981 TRIVSRGYELRDAVHGMLSQMD 1002 (1205)
Q Consensus 981 s~i~~~A~~l~~~~~~~~~~~~ 1002 (1205)
+.|+.+|..|++.|++.|++++
T Consensus 152 s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 152 SPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999998775
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=6.6e-20 Score=216.42 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=83.2
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccC-CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-H
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHIT-PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~-~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-~ 457 (1205)
+|+|++++|..|..++..|+..+.++..+... +++++||+||||||||++|++||..++ .+|+.++++.+.. .
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~-----~~~~~v~~~~~~~~g 90 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC---
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC-----CCceeecchhhcccc
Confidence 58999999999999998877777766655433 568999999999999999999999985 6788899988887 5
Q ss_pred HHHH-HHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc-ccccccccc
Q 000974 458 WVGE-AERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA-TNRVDAIDG 535 (1205)
Q Consensus 458 ~~g~-~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a-tn~~~~ld~ 535 (1205)
|+|. .+..++.+|..+... +++||++.+... .......+++.+|+.+|+++.....+ +++ ||+++.||+
T Consensus 91 ~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 91 YVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp -CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----------------------------------------------
T ss_pred eeeccHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 8884 789999999988764 568998877533 23345678999999999998766554 444 999999999
Q ss_pred cccCCCCccccccCCCCCch-hhhhhhh
Q 000974 536 ALRRPGRFDREFNFPLPGCE-ARAEILD 562 (1205)
Q Consensus 536 aL~r~gRf~~~I~~~~P~~e-er~~Il~ 562 (1205)
+|+|+|||++.|+|++|+.. .+.+||.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999876 6677764
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.77 E-value=2.3e-19 Score=216.01 Aligned_cols=214 Identities=18% Similarity=0.247 Sum_probs=157.4
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000974 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
+.+.|.++.++...+.++.+.+..+ ..+..+..++ +. .+.++||+||||||||+||++|++++ +.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l----~~~~~~~~lg-----~~----ip~GvLL~GppGtGKTtLaraIa~~~-~~~ 91 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMG-----AR----IPKGVLLVGPPGVGKTHLARAVAGEA-RVP 91 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHH----HCGGGTTTTS-----CC----CCSEEEEECSSSSSHHHHHHHHHHHT-TCC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHh----hchhhhhhcc-----CC----CCceEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence 4567777777666655555443221 1122333332 22 24689999999999999999999998 789
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCCe
Q 000974 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~v 801 (1205)
++.++.+++...+ .|.....++.+|+.|....||||||||||.+... .....++.|+..|++......+
T Consensus 92 ~i~i~g~~~~~~~-~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 92 FITASGSDFVEMF-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 170 (499)
T ss_dssp EEEEEGGGGTSSC-TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC
T ss_pred EEEEehhHHHHhh-hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE
Confidence 9999998887665 7888888999999999889999999999998631 2234556666667766667789
Q ss_pred EEeccCCcCCccccCCCccccCC--CceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000974 802 LLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~--r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+||++||.| +.||+ +.++++ ..+++|++|+.++|.+||+.++.. .....++++..|+.. ++|
T Consensus 171 iviAatn~p-~~LD~--aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~----------~~l~~dv~l~~lA~~---t~G 234 (499)
T 2dhr_A 171 VVMAATNRP-DILDP--ALLRPGRFDRQIAIDAPDVKGREQILRIHARG----------KPLAEDVDLALLAKR---TPG 234 (499)
T ss_dssp EEEECCSCG-GGSCT--TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS----------SCCCCSSTTHHHHTT---SCS
T ss_pred EEEEecCCh-hhcCc--ccccccccceEEecCCCCHHHHHHHHHHHHhc----------CCCChHHHHHHHHHh---cCC
Confidence 999999998 78998 444433 378899999999999999876632 123344556666555 889
Q ss_pred CchhhhhHhH-HHHHHHH
Q 000974 880 PKASELKAKV-EAEQHAL 896 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~al 896 (1205)
+++++|++++ ++...+.
T Consensus 235 ~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAA 252 (499)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 9999999999 6666554
No 82
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.76 E-value=1.4e-19 Score=200.75 Aligned_cols=176 Identities=20% Similarity=0.286 Sum_probs=128.6
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH--
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA-- 780 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~-- 780 (1205)
+.++||+||||||||++|+++++++ +.+++.++++.+...+ .|.++..+..+|..|....|+||||||||.+....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~ 116 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA-QVPFLAMAGAEFVEVI-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRST 116 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-TCCEEEEETTTTSSSS-TTHHHHHHHHHHHHHHHTCSEEEEEECC---------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHHHhhc-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccc
Confidence 4689999999999999999999998 7899999998887765 78888899999999998889999999999996432
Q ss_pred ---------HHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCcccc--CCCceeeecCCCccchhhhHHHHHHHH
Q 000974 781 ---------HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVF--PLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 781 ---------~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f--~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
....+..|+..++.+....+++||+|||.+ ..|++ +.++ ++...++|++|+.++|..||+.++...
T Consensus 117 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~-~~ld~--~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 117 TMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA-DILDG--ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp ----------CHHHHHHHHHHHTCCTTCCEEEEEEESCG-GGGGS--GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT
T ss_pred cccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh-hhcCH--HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC
Confidence 123445566666666666789999999998 78888 4444 223788899999999999999998752
Q ss_pred HHHhhccCCCCCCCC--CCCCCCCCCCCccCCCchhhhhHhH-HHHHHHH
Q 000974 850 VSVVLEGRSKKPQES--VSLPELPKVPTVESGPKASELKAKV-EAEQHAL 896 (1205)
Q Consensus 850 ~~~~~~~~~~~~~~~--~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~al 896 (1205)
..... ..+..|+.. +.|+++++|.+++ .+...+.
T Consensus 194 ----------~~~~~~~~~~~~l~~~---~~g~~~~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 194 ----------KLTQSSTFYSQRLAEL---TPGFSGADIANICNEAALHAA 230 (262)
T ss_dssp ----------TCCBTHHHHHHHHHHT---CTTCCHHHHHHHHHHHHTC--
T ss_pred ----------CCCcchhhHHHHHHHH---CCCCCHHHHHHHHHHHHHHHH
Confidence 11111 111233333 6788999998887 4444443
No 83
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.74 E-value=3.5e-19 Score=210.08 Aligned_cols=224 Identities=21% Similarity=0.251 Sum_probs=154.1
Q ss_pred ccceecccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhh
Q 000974 645 RGATVHSRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 645 r~~~~~~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala 724 (1205)
+......+++.|.++.|....++.+...+... ......+..++ ..+.++||+||||||||++|++||
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~---~~~~~~~~~~~----------~~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILP---SLRPELFTGLR----------APARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHH---HHCTTTSCGGG----------CCCSEEEEESSTTSCHHHHHHHHH
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHh---ccCHHHhcccC----------CCCceEEEECCCCCCHHHHHHHHH
Confidence 34444566778998888877777776664211 11111111111 113589999999999999999999
Q ss_pred hhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcCC
Q 000974 725 HELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS 797 (1205)
Q Consensus 725 ~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~~ 797 (1205)
+.+ +.+|+.++++.+...| .|..+..+..+|..|+...|+||||||||.++.. ...++.+.|+..|+++..
T Consensus 170 ~~~-~~~~~~v~~~~l~~~~-~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 170 AES-NATFFNISAASLTSKY-VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp HHT-TCEEEEECSCCC--------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred Hhh-cCcEEEeeHHHhhccc-cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 998 8999999999999876 7888999999999999999999999999999633 245677778888887754
Q ss_pred --CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Q 000974 798 --HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPT 875 (1205)
Q Consensus 798 --~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~ 875 (1205)
...|+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++... ........+..|+.
T Consensus 248 ~~~~~v~vI~atn~~-~~l~~--~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~~~~la~--- 312 (389)
T 3vfd_A 248 AGDDRVLVMGATNRP-QELDE--AVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ---------GSPLTQKELAQLAR--- 312 (389)
T ss_dssp ----CEEEEEEESCG-GGCCH--HHHTTCCEEEECCCCCHHHHHHHHHHHHTTS---------CCCSCHHHHHHHHH---
T ss_pred cCCCCEEEEEecCCc-hhcCH--HHHcCcceEEEcCCcCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHH---
Confidence 5689999999997 78887 4444444678899999999999999887531 01111112223333
Q ss_pred ccCCCchhhhhHhH-HHHHHHHHH
Q 000974 876 VESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 876 ~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.+.|+++++|..++ .+...++++
T Consensus 313 ~~~g~~~~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 313 MTDGYSGSDLTALAKDAALGPIRE 336 (389)
T ss_dssp HTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHh
Confidence 36788888888877 555555544
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.74 E-value=1.5e-19 Score=190.32 Aligned_cols=101 Identities=25% Similarity=0.395 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccC--CceeeeccccccchhhhcccccccC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS--GHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~--~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
.++..|+.||..|..++.+++|..||+. .+|+||+||++||||+||++||++ +.|.++.+|.+||+|||+||++||+
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 159 (184)
T 3o36_A 81 IDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNE 159 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4456678899999999999999999996 589999999999999999999998 7999999999999999999999999
Q ss_pred CCCCcceeeechhhhhhhHhhhhhccC
Q 000974 976 NDYNGTRIVSRGYELRDAVHGMLSQMD 1002 (1205)
Q Consensus 976 ~~~~~s~i~~~A~~l~~~~~~~~~~~~ 1002 (1205)
+ ++.|+.+|..|++.|++.|+++.
T Consensus 160 ~---~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 160 P---DSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHHHHC
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHhC
Confidence 8 77899999999999999998664
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.74 E-value=1.3e-19 Score=205.33 Aligned_cols=163 Identities=13% Similarity=0.150 Sum_probs=120.7
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccc----cccCCceeeeccchhhHH
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEA----RRTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A----~~~~p~ILfiDEid~l~~ 778 (1205)
+.++||+||||||||++|++||+++ +.+|+.++++.+.++| +|.++..++++|..| +...||||||||||+++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELESGN-AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHCC----HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhhcc-CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 4689999999999999999999999 8999999999999887 799999999999998 677899999999999986
Q ss_pred hHH---------HHHHHHHHHHHHhcC-----------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccch
Q 000974 779 NAH---------EQLRAVLLTLLEELP-----------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDR 838 (1205)
Q Consensus 779 ~~~---------~~~~~~ll~lL~~~~-----------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR 838 (1205)
... ..+.+.|+++|+++. ...+|+||+|||.+ +.||+ +.++++|.-..|..|+.++|
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-~~ld~--al~R~~R~d~~i~~P~~~~r 190 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-STLYA--PLIRDGRMEKFYWAPTREDR 190 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC-CC--C--HHHHHHHEEEEEECCCHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc-ccCCH--HHhCCCCCceeEeCcCHHHH
Confidence 321 256788999998543 45689999999998 88998 66665553333347899999
Q ss_pred hhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhH
Q 000974 839 SLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKA 887 (1205)
Q Consensus 839 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~ 887 (1205)
..||+.++.. ...++..+... +.++++++|..
T Consensus 191 ~~Il~~~~~~--------------~~~~~~~l~~~---~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRT--------------DNVPAEDVVKI---VDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGG--------------GCCCHHHHHHH---HHHSCSCCHHH
T ss_pred HHHHHHhccC--------------CCCCHHHHHHH---hCCCCcccHHH
Confidence 9999977742 12334444444 66777777754
No 86
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.74 E-value=2.9e-19 Score=198.72 Aligned_cols=107 Identities=28% Similarity=0.398 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.|+..|..||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|..||+|||+||++||++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~- 92 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP- 92 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCC-
Confidence 6788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhHHH
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQMDPALVS 1007 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 1007 (1205)
++.|+.+|..|++.|.+.|+++...+..
T Consensus 93 --~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 120 (265)
T 3uv5_A 93 --KHSLTQISQSMLDLCDEKLKEKEDKLAR 120 (265)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 7789999999999999999988766543
No 87
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.74 E-value=4.2e-19 Score=206.92 Aligned_cols=220 Identities=17% Similarity=0.231 Sum_probs=160.4
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000974 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.++..|.++.|+...++.+.+.+.. ++..+..+.+++ ..+.++||+||||||||++|++||+.+ +.
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~----------~~~~~vLl~GppGtGKT~la~aia~~~-~~ 143 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVW---PMLRPDIFTGLR----------GPPKGILLFGPPGTGKTLIGKCIASQS-GA 143 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGG----------SCCSEEEEESSTTSSHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH---HhhChHhHhhcc----------CCCceEEEECCCCCCHHHHHHHHHHHc-CC
Confidence 4567888888877777777665432 111122222111 124579999999999999999999998 88
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcC--CCCCe
Q 000974 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELP--SHLPI 801 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~--~~~~v 801 (1205)
+|+.++++.++..| .|..+..++.+|..|....|+||||||||.+... ...++.+.|+..|+++. ...+|
T Consensus 144 ~~~~i~~~~l~~~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 144 TFFSISASSLTSKW-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp EEEEEEGGGGCCSS-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred eEEEEehHHhhccc-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 99999999999876 7888999999999999999999999999999642 34466777888888764 35689
Q ss_pred EEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCc
Q 000974 802 LLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPK 881 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S 881 (1205)
+||+|||.+ +.|++ +.++++..+++|++|+.++|..||+.++... .......++..|+. .+.|++
T Consensus 223 ~vI~atn~~-~~l~~--~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~l~~la~---~t~G~s 287 (357)
T 3d8b_A 223 LVVGATNRP-QEIDE--AARRRLVKRLYIPLPEASARKQIVINLMSKE---------QCCLSEEEIEQIVQ---QSDAFS 287 (357)
T ss_dssp EEEEEESCG-GGBCH--HHHTTCCEEEECCCCCHHHHHHHHHHHHHTS---------CBCCCHHHHHHHHH---HTTTCC
T ss_pred EEEEecCCh-hhCCH--HHHhhCceEEEeCCcCHHHHHHHHHHHHhhc---------CCCccHHHHHHHHH---HcCCCC
Confidence 999999997 78888 4444444788899999999999999988641 00011122333433 377999
Q ss_pred hhhhhHhH-HHHHHHHHHHH
Q 000974 882 ASELKAKV-EAEQHALRRLR 900 (1205)
Q Consensus 882 ~aELk~~~-ea~~~alrelr 900 (1205)
+++|..+| .+...++|++.
T Consensus 288 ~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 288 GADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp HHHHHHHHHHHHTHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999 66666666543
No 88
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=3e-19 Score=202.40 Aligned_cols=219 Identities=23% Similarity=0.315 Sum_probs=158.6
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000974 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.++..|.++.|....++.+.+.+.. +...+..+..++ . .+.++||+||||||||++|+++++.+ +.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~---~~~~~~~~~~~~-------~---~~~~vll~Gp~GtGKT~la~~la~~~-~~ 80 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVIL---PSVRPELFTGLR-------A---PAKGLLLFGPPGNGKTLLARAVATEC-SA 80 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHH---HHHCGGGSCGGG-------C---CCSEEEEESSSSSCHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHh---hhhCHHHHhcCC-------C---CCCeEEEECcCCCCHHHHHHHHHHHh-CC
Confidence 4567788887777776666665321 011122222111 1 13579999999999999999999998 78
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh-------HHHHHHHHHHHHHHhcCC---CCC
Q 000974 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN-------AHEQLRAVLLTLLEELPS---HLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~-------~~~~~~~~ll~lL~~~~~---~~~ 800 (1205)
+|+.++++.+...+ .|..+..++.+|..+....|+||||||+|.+... ....+.+.|+..|+++.. ...
T Consensus 81 ~~~~i~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 81 TFLNISAASLTSKY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp EEEEEESTTTSSSS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred CeEEeeHHHHhhcc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 99999999998876 7888999999999999999999999999999743 124567778888888764 367
Q ss_pred eEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCC
Q 000974 801 ILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGP 880 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~ 880 (1205)
++||+|||.+ +.|++ +.++++..++++++|+.++|..||+.++... ........+..|+.. +.|+
T Consensus 160 v~vi~~tn~~-~~l~~--~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~~la~~---~~g~ 224 (297)
T 3b9p_A 160 IVVLAATNRP-QELDE--AALRRFTKRVYVSLPDEQTRELLLNRLLQKQ---------GSPLDTEALRRLAKI---TDGY 224 (297)
T ss_dssp EEEEEEESCG-GGBCH--HHHHHCCEEEECCCCCHHHHHHHHHHHHGGG---------SCCSCHHHHHHHHHH---TTTC
T ss_pred EEEEeecCCh-hhCCH--HHHhhCCeEEEeCCcCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHH---cCCC
Confidence 9999999998 78887 4333444788899999999999999887542 011111223334333 6799
Q ss_pred chhhhhHhH-HHHHHHHHHH
Q 000974 881 KASELKAKV-EAEQHALRRL 899 (1205)
Q Consensus 881 S~aELk~~~-ea~~~alrel 899 (1205)
++++|..++ .+...++|++
T Consensus 225 ~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 225 SGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp CHHHHHHHHHHHTTHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 999999988 6666666654
No 89
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.73 E-value=5.7e-19 Score=196.35 Aligned_cols=111 Identities=28% Similarity=0.488 Sum_probs=99.5
Q ss_pred HHHHHHHHhh-hhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 899 LRMCLRDVCN-RMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 899 lr~~lr~il~-~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
|...|..++. .+..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|..||+|||+||++||++
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~- 215 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP- 215 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC-
Confidence 4445555554 47789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhHHHHHHHh
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQMDPALVSYCDKI 1012 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 1012 (1205)
+|.|+.+|..|+..|...|.++...+......+
T Consensus 216 --~s~~~~~A~~l~~~~~~~~~~~~~~~~~~e~~i 248 (265)
T 3uv5_A 216 --ESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 248 (265)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999988776655544
No 90
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.73 E-value=4.1e-19 Score=198.21 Aligned_cols=169 Identities=23% Similarity=0.358 Sum_probs=128.8
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHH
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~ 782 (1205)
+.++||+||||||||++|++|++.+ +.+++.++++.+...+ .|..+..++.+|..|....|+||||||+|.+......
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 121 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA-HVPFFSMGGSSFIEMF-VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH-TCCCCCCCSCTTTTSC-SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCCEEEechHHHHHhh-cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccc
Confidence 3579999999999999999999998 7899999998888765 6777778889999999889999999999999753211
Q ss_pred -----------HHHHHHHHHHHhcCC-CCCeEEeccCCcCCccccCCCccccCC--CceeeecCCCccchhhhHHHHHHH
Q 000974 783 -----------QLRAVLLTLLEELPS-HLPILLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 783 -----------~~~~~ll~lL~~~~~-~~~v~vIattn~~~~~Ld~~~~~~f~~--r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.+++.|+..|++... ..+|+||+|||.+ +.|++ +.++++ ..+++|++|+.++|..||+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-~~ld~--~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 122 GGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP-EILDP--ALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp ------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC-TTSCG--GGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred cccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc-hhcCH--hHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 123344444444432 3469999999998 77887 444422 377889999999999999887753
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH
Q 000974 849 AVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV 889 (1205)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~ 889 (1205)
. ....+.++..|+.. +.|+++++|.+++
T Consensus 199 ~----------~~~~~~~~~~la~~---~~g~~g~dl~~l~ 226 (268)
T 2r62_A 199 V----------KLANDVNLQEVAKL---TAGLAGADLANII 226 (268)
T ss_dssp S----------CCCSSCCTTTTTSS---SCSSCHHHHHHHH
T ss_pred C----------CCCCccCHHHHHHH---cCCCCHHHHHHHH
Confidence 1 22345567777766 6789999998877
No 91
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.72 E-value=7.9e-19 Score=197.51 Aligned_cols=111 Identities=28% Similarity=0.487 Sum_probs=101.1
Q ss_pred HHHHHHh-hhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCC
Q 000974 901 MCLRDVC-NRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYN 979 (1205)
Q Consensus 901 ~~lr~il-~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~ 979 (1205)
..+..++ ..+..++.+++|..||++..+|+||+||++||||+||++||++|.|.|+.+|.+||+|||+||++||++
T Consensus 172 ~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~--- 248 (292)
T 3aad_A 172 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP--- 248 (292)
T ss_dssp HHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---
Confidence 3444444 457788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeeechhhhhhhHhhhhhccChhHHHHHHHhhh
Q 000974 980 GTRIVSRGYELRDAVHGMLSQMDPALVSYCDKIAA 1014 (1205)
Q Consensus 980 ~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1205)
+|.|+.+|..|++.|...+..++..+...|..+..
T Consensus 249 ~s~i~~~A~~L~~~~~~~~~~~~~~l~~le~~i~~ 283 (292)
T 3aad_A 249 ESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT 283 (292)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999998888887653
No 92
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=1.7e-17 Score=193.72 Aligned_cols=224 Identities=19% Similarity=0.159 Sum_probs=160.2
Q ss_pred cccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 373 DESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 373 ~~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
.|..+|++|+|++.++..+..++..- ..+..+++++||+||||||||++|+++|+.+... .+|+.+++.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~~~~~~ 106 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFTAIAGS 106 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEEEEEGG
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCcccccch
Confidence 35667999999999998876655431 1133446799999999999999999999998632 455555554
Q ss_pred hhHHH-------------------------------------------------HHHHHHHHHHHHHHHHhh-----c--
Q 000974 453 DVLSK-------------------------------------------------WVGEAERQLKLLFEEAQR-----N-- 476 (1205)
Q Consensus 453 ~l~~~-------------------------------------------------~~g~~e~~l~~lf~~a~~-----~-- 476 (1205)
.+... +.|.....++..|..+.. .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 42211 112223344444443322 1
Q ss_pred --CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc-----------cccccccccccCCCCc
Q 000974 477 --QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT-----------NRVDAIDGALRRPGRF 543 (1205)
Q Consensus 477 --~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at-----------n~~~~ld~aL~r~gRf 543 (1205)
.|+||||||+|.|. ...+..|+..++... ..+++|++. |.+..++++|++ ||
T Consensus 187 ~~~~~vl~IDEi~~l~-----------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLD-----------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp --CBCEEEEESGGGSB-----------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred cccCceEEEhhccccC-----------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 16799999999884 345666777776432 245544443 356779999999 99
Q ss_pred cccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEecc
Q 000974 544 DREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVD 623 (1205)
Q Consensus 544 ~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~ 623 (1205)
.. |.|++|+.+++.+||+..+...+..++.+.+..|+..+.+.+.+++.++|..|+..|..+..
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~--------------- 315 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG--------------- 315 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---------------
Confidence 65 89999999999999999988878888999999999999867899999999999988866532
Q ss_pred ceeeeehhhhhhhccc
Q 000974 624 SVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 624 ~~~It~~df~~al~~i 639 (1205)
..|+.+++..++..+
T Consensus 316 -~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 316 -TEVQVDDIKRVYSLF 330 (368)
T ss_dssp -SSBCHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHh
Confidence 247888888877653
No 93
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.71 E-value=3.9e-18 Score=188.95 Aligned_cols=215 Identities=18% Similarity=0.247 Sum_probs=150.6
Q ss_pred ccccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccC
Q 000974 651 SRPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKF 730 (1205)
Q Consensus 651 ~~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~ 730 (1205)
.+.+.|.++.++.....++...+..+ .....+..++ +. .++|++|+||||||||+|+++|++.+ +.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~----~~~~~~~~~~-----~~----~~~g~ll~G~~G~GKTtl~~~i~~~~-~~ 75 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMG-----AR----IPKGVLLVGPPGVGKTHLARAVAGEA-RV 75 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHH----HCHHHHHHTT-----CC----CCSEEEEECCTTSSHHHHHHHHHHHT-TC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHH----HCHHHHHHcC-----CC----CCCeEEEECCCCCCHHHHHHHHHHHh-CC
Confidence 45667777766655544444332111 1122233332 22 23579999999999999999999998 67
Q ss_pred ccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----------HHHHHHHHHHHHHHhcCCCCC
Q 000974 731 PVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN----------AHEQLRAVLLTLLEELPSHLP 800 (1205)
Q Consensus 731 ~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~----------~~~~~~~~ll~lL~~~~~~~~ 800 (1205)
+++.++...+...+ .|.....+..+|+.+....|+++||||+|.+... .....++.++..|++......
T Consensus 76 ~~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 76 PFITASGSDFVEMF-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp CEEEEEHHHHHHSC-TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred CEEEeeHHHHHHHH-hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 88888777666544 5777778899999998888999999999988632 123445666777777776778
Q ss_pred eEEeccCCcCCccccCCCccccCC--CceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccC
Q 000974 801 ILLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVES 878 (1205)
Q Consensus 801 v~vIattn~~~~~Ld~~~~~~f~~--r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~ 878 (1205)
++++++||.| +.||+ +.++++ ..+++|++|+.++|.+||+.++.. .....+.++..|+.. +.
T Consensus 155 ~i~~a~t~~p-~~ld~--~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~----------~~~~~~~~~~~la~~---~~ 218 (254)
T 1ixz_A 155 IVVMAATNRP-DILDP--ALLRPGRFDRQIAIDAPDVKGREQILRIHARG----------KPLAEDVDLALLAKR---TP 218 (254)
T ss_dssp EEEEEEESCG-GGSCG--GGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT----------SCBCTTCCHHHHHHT---CT
T ss_pred EEEEEccCCc-hhCCH--HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC----------CCCCcccCHHHHHHH---cC
Confidence 9999999998 88998 444433 378899999999999999877642 122233444445444 78
Q ss_pred CCchhhhhHhH-HHHHHHH
Q 000974 879 GPKASELKAKV-EAEQHAL 896 (1205)
Q Consensus 879 g~S~aELk~~~-ea~~~al 896 (1205)
|+++++|++++ ++...+.
T Consensus 219 G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 219 GFVGADLENLLNEAALLAA 237 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 99999999998 5554444
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.71 E-value=9.1e-19 Score=187.72 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccC---CceeeeccccccchhhhcccccccC
Q 000974 899 LRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDS---GHYVTCSAFLQDVDLIVTNAKAYNG 975 (1205)
Q Consensus 899 lr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~---~~Y~s~~ef~~Dv~Li~~Na~~yN~ 975 (1205)
++..|..||..|..++.+++|..||+. .+|+||+||++||||+||++||++ |.|.++.+|.+||+|||+||++||+
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 160 (207)
T 3u5n_A 82 DQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNE 160 (207)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 445678899999999999999999987 899999999999999999999997 7999999999999999999999999
Q ss_pred -----------------CCCCcceeeechhhhhhhHhhhhhccChh
Q 000974 976 -----------------NDYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 976 -----------------~~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
+ ++.|+.+|..|+..|+..|+++.++
T Consensus 161 ~~s~v~~~A~~l~~~~~~---~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 161 MMKVVQVYADTQEINLKA---DSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHC----------CC---CCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcchHHHHHHHHHhcccc---cCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 6778999999999999999877664
No 95
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-19 Score=184.51 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=87.1
Q ss_pred HHHHHhhhhhccccccccccccCCCCCccchhhcc--CcchHHHHHhhccCC---ceeeeccccccchhhhcccccccCC
Q 000974 902 CLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQ--NPMDLATLLQRVDSG---HYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 902 ~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk--~PMDL~tI~~kl~~~---~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
.|..||..|..++.+|+|..||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+||++||+
T Consensus 80 ~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~- 154 (189)
T 2ro1_A 80 KCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTE- 154 (189)
T ss_dssp HHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCC-
Confidence 46778889999999999999998 67999998 899999999999999 999999999999999999999994
Q ss_pred CCCcceeeechhhhhhhHhhhhhccChh
Q 000974 977 DYNGTRIVSRGYELRDAVHGMLSQMDPA 1004 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~~~ 1004 (1205)
++.|+.+|..|++.|++.|+++.++
T Consensus 155 ---~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 155 ---DKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp ---SSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3468899999999999999987764
No 96
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.70 E-value=1.7e-18 Score=194.78 Aligned_cols=105 Identities=29% Similarity=0.406 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCC
Q 000974 898 RLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGND 977 (1205)
Q Consensus 898 elr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 977 (1205)
.+...|..||..|..++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|..||+|||+||.+||++
T Consensus 47 ~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~- 125 (292)
T 3aad_A 47 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP- 125 (292)
T ss_dssp HHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC-
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeechhhhhhhHhhhhhccChhH
Q 000974 978 YNGTRIVSRGYELRDAVHGMLSQMDPAL 1005 (1205)
Q Consensus 978 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 1005 (1205)
++.|+.+|..|++.|.+.|+++...+
T Consensus 126 --~s~i~~~A~~L~~~~~~~~~~~~~~~ 151 (292)
T 3aad_A 126 --KHSLTQISQSMLDLCDEKLKEKEDKL 151 (292)
T ss_dssp --SSHHHHHHTHHHHTTTTTGGGSHHHH
T ss_pred --chHHHHHHHHHHHHHHhhhhcchhhh
Confidence 67899999999999999999876543
No 97
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.69 E-value=3.7e-17 Score=185.61 Aligned_cols=245 Identities=18% Similarity=0.233 Sum_probs=167.9
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccc-cCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYH-ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS- 456 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~- 456 (1205)
++|+|++.++..|..++..++....+...+. ...+.++||+||||||||++|+++|+.++ .+++.+++..+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccC
Confidence 3589999999999988866443333332221 23567999999999999999999999984 4677788877654
Q ss_pred HHHHH-HHHHHHHHHHHHh-----hcCCceEEEeccCCcccccchhh-hHHHHHHHHHHHHHhhCcc--------cCCcE
Q 000974 457 KWVGE-AERQLKLLFEEAQ-----RNQPSIIFFDEIDGLAPVRSSKQ-EQIHNSIVSTLLALMDGLD--------SRGQV 521 (1205)
Q Consensus 457 ~~~g~-~e~~l~~lf~~a~-----~~~p~VL~IDEid~L~~~r~~~~-~~~~~~v~~~Ll~~ld~~~--------~~~~v 521 (1205)
.|+|. ....++.++..+. ...++||||||+|.|.+...... ......++..|+..|++.. ...++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 169 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcE
Confidence 44443 2234555554321 12357999999999987653222 2223446778888888531 23467
Q ss_pred EEEcc----ccccccccccccCCCCccccccCCCCCchhhhhhhhccc-------------cccCCCCchhHHHHHhhhh
Q 000974 522 VLIGA----TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHT-------------RKWKQPPSRELKSELAASC 584 (1205)
Q Consensus 522 iVI~a----tn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l-------------~~~~~~~~~~~l~~LA~~t 584 (1205)
+||++ ++.+..++++|.+ ||+..|.|++|+.+++.+|++..+ ......++.+.++.|+..+
T Consensus 170 ~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 170 LFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp EEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHH
T ss_pred EEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHh
Confidence 88887 4567789999998 999889999999999999998422 1222356788888888877
Q ss_pred h-------cccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccC
Q 000974 585 V-------GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 585 ~-------G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
. +.+.+.+.++|..+...+..+... . ......|+.+++..++....
T Consensus 248 ~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~----~------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 248 FRVNEKTENIGARRLHTVMERLMDKISFSASD----M------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG----C------TTCEEEECHHHHHHHTCSSS
T ss_pred hhhcccccccCcHHHHHHHHHHHHhhhcCCcc----c------cCCEEEEeeHHHHHHHHhhh
Confidence 4 457888888888877655433211 0 01233588888888887653
No 98
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.68 E-value=5e-18 Score=226.04 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=81.7
Q ss_pred eeeecCCCCCCCccchhhhhhc--ccCc--cccCCC--cccc--------CCCCCCC----hhhHHHHhhccccccCCce
Q 000974 706 LLLCGSEGTGVDHLGPAILHEL--EKFP--VHSLGL--PALL--------SDPSAKT----PEEALVHIFGEARRTTPSI 767 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l--~~~~--~~~l~~--~~l~--------~~~~~g~----se~~~~~lf~~A~~~~p~I 767 (1205)
+|+|||||||||+||++++.+. ++-+ |+.+.. ++++ ++| .++ +|++++.+|..|+...||+
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~-~~~~~~~~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL-LCSQPDTGEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGC-EEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHH-hhccccchHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999999874 1223 444432 2222 444 466 8999999999999999999
Q ss_pred eeeccchhhHHh-------------HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc
Q 000974 768 LYIPQFNLWWEN-------------AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 768 LfiDEid~l~~~-------------~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld 815 (1205)
||||++++|++. ...++++++++.|+.+....+|+|| +||+..+.+.
T Consensus 1164 i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1164 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIG 1223 (1706)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTT
T ss_pred EEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccch
Confidence 999999988744 3445678888888887777788888 7887644443
No 99
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=6.5e-17 Score=198.25 Aligned_cols=232 Identities=19% Similarity=0.229 Sum_probs=150.1
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..-+++++|+++++..+.+.+......... +..++||+||||||||+||++||..+. ..|..+++..+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 445677999999999998876553222221 456899999999999999999999985 45555555433
Q ss_pred H---------HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccC-------
Q 000974 455 L---------SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR------- 518 (1205)
Q Consensus 455 ~---------~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~------- 518 (1205)
. ..|+|.....+...|..+....| ||||||||.+.+... ...+..|+..|+.....
T Consensus 145 ~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~ 216 (543)
T 3m6a_A 145 RDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYI 216 (543)
T ss_dssp -------------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSS
T ss_pred chhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccC
Confidence 2 25667777777778887766666 999999999975432 12455677777643211
Q ss_pred ------CcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccc-----c-----CCCCchhHHHHHhh
Q 000974 519 ------GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-----W-----KQPPSRELKSELAA 582 (1205)
Q Consensus 519 ------~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~-----~-----~~~~~~~~l~~LA~ 582 (1205)
.+++||+|||.++.++++|++ || .+|.|+.|+.+++..|++.++.. . .+.++.+.+..++.
T Consensus 217 ~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~ 293 (543)
T 3m6a_A 217 EETFDLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR 293 (543)
T ss_dssp CCCCBCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH
T ss_pred CeeecccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH
Confidence 568999999999999999999 99 47999999999999999887622 1 33456777777776
Q ss_pred hhhc-ccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 583 SCVG-YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 583 ~t~G-~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
...+ .+.++|++.+..++..+..+... . ......|+.+++..++...
T Consensus 294 ~~~~~~~vR~L~~~i~~~~~~aa~~~~~----~------~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 294 YYTREAGVRSLERQLAAICRKAAKAIVA----E------ERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHCCCSSSHHHHHHHHHHHHHHHHHHHT----T------CCSCCEECTTTTHHHHCSC
T ss_pred hCChhhchhHHHHHHHHHHHHHHHHHHh----c------CCcceecCHHHHHHHhCCc
Confidence 4443 34455555544444433332211 0 1123468888888877543
No 100
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.66 E-value=2.5e-17 Score=185.10 Aligned_cols=214 Identities=18% Similarity=0.246 Sum_probs=146.0
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhcCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCc
Q 000974 652 RPLSLVVAPCLQRHLQKAMNYISDIFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFP 731 (1205)
Q Consensus 652 ~~~~~~~i~~l~~~L~~~~~~l~~i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~ 731 (1205)
+.+.|.++.+......++...+..+ .....+..++ +. .+++++|+||||||||+|+++|++.+ ..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~----~~~~~l~~~~-----~~----~~~gvll~Gp~GtGKTtl~~~i~~~~-~~~ 100 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMG-----AR----IPKGVLLVGPPGVGKTHLARAVAGEA-RVP 100 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHH----HCHHHHHHTT-----CC----CCCEEEEECCTTSSHHHHHHHHHHHT-TCC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHH----HCHHHHHHcC-----CC----CCCeEEEECCCcChHHHHHHHHHHHc-CCC
Confidence 5667777766655555444432211 1122233322 22 23579999999999999999999998 578
Q ss_pred cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhH----------HHHHHHHHHHHHHhcCCCCCe
Q 000974 732 VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENA----------HEQLRAVLLTLLEELPSHLPI 801 (1205)
Q Consensus 732 ~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~----------~~~~~~~ll~lL~~~~~~~~v 801 (1205)
++.++...+...+ .+.....+..+|+.+....|+++||||++.+.... ....+..++..|++......+
T Consensus 101 ~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 101 FITASGSDFVEMF-VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp EEEEEHHHHHHST-TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred EEEecHHHHHHHH-hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 8888776665544 56677788899999988889999999999886321 123444555555555556678
Q ss_pred EEeccCCcCCccccCCCccccCC--CceeeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCC
Q 000974 802 LLLGSSSVPLAEVEGDPSTVFPL--RSVYQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESG 879 (1205)
Q Consensus 802 ~vIattn~~~~~Ld~~~~~~f~~--r~ii~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g 879 (1205)
+++++||.| +.||+ +.++++ ..+++|++|+.++|.+||+.++.. .....+.++..|+.. +.|
T Consensus 180 i~~a~t~~p-~~ld~--~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~----------~~~~~~~~~~~la~~---~~G 243 (278)
T 1iy2_A 180 VVMAATNRP-DILDP--ALLRPGRFDRQIAIDAPDVKGREQILRIHARG----------KPLAEDVDLALLAKR---TPG 243 (278)
T ss_dssp EEEEEESCT-TSSCH--HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT----------SCBCTTCCHHHHHHT---CTT
T ss_pred EEEEecCCc-hhCCH--hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc----------CCCCcccCHHHHHHH---cCC
Confidence 999999998 88988 444322 278899999999999999977642 122233344444443 789
Q ss_pred CchhhhhHhH-HHHHHHH
Q 000974 880 PKASELKAKV-EAEQHAL 896 (1205)
Q Consensus 880 ~S~aELk~~~-ea~~~al 896 (1205)
+++++|++++ .+...+.
T Consensus 244 ~~~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 244 FVGADLENLLNEAALLAA 261 (278)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 9999999988 4544443
No 101
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.65 E-value=1.8e-17 Score=187.40 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=83.6
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000974 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++ +|.|+.+|..|+
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~---~s~i~~~A~~L~ 253 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP---SALIYKDATTLT 253 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT---TSHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999998 788999999999
Q ss_pred hhHhhhhhcc
Q 000974 992 DAVHGMLSQM 1001 (1205)
Q Consensus 992 ~~~~~~~~~~ 1001 (1205)
+.|+..|++.
T Consensus 254 ~~f~~~~~~~ 263 (311)
T 2r0y_A 254 NYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 102
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.65 E-value=2e-16 Score=184.73 Aligned_cols=241 Identities=19% Similarity=0.237 Sum_probs=162.7
Q ss_pred cCChhHHHHHhhhhhccccccccccc--ccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-H
Q 000974 381 IGGLSEYIDALKEMVFFPLLYPDFFA--SYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-K 457 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~--~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-~ 457 (1205)
|+|++.++..|..++........... .....++.+|||+||||||||++|++||+.++ .+|+.+++..+.. .
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAG 91 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHTTCH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHHhcccc
Confidence 79999999999988853221111000 01113567999999999999999999999984 6788889888774 4
Q ss_pred HHHHH-HHHHHHHHHHH----hhcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhhCccc-----------C
Q 000974 458 WVGEA-ERQLKLLFEEA----QRNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMDGLDS-----------R 518 (1205)
Q Consensus 458 ~~g~~-e~~l~~lf~~a----~~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld~~~~-----------~ 518 (1205)
|+|.. ...+..+|..+ ....++||||||||.+.+.+.... ......++..|+..|++... .
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 78875 56677777765 334567999999999987654322 22234589999999984310 0
Q ss_pred CcEEEEccccc--------c----------------------------------------cc-----ccccccCCCCccc
Q 000974 519 GQVVLIGATNR--------V----------------------------------------DA-----IDGALRRPGRFDR 545 (1205)
Q Consensus 519 ~~viVI~atn~--------~----------------------------------------~~-----ld~aL~r~gRf~~ 545 (1205)
.++++|+|||. . .. +.++|.. ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 12334444443 1 01 5677777 9999
Q ss_pred cccCCCCCchhhhhhhhc----ccc---------ccCCCCchhHHHHHhhh--hhcccchhHHHHhHHHHHHHHHHhCCc
Q 000974 546 EFNFPLPGCEARAEILDI----HTR---------KWKQPPSRELKSELAAS--CVGYCGADLKALCTEAAIRAFREKYPQ 610 (1205)
Q Consensus 546 ~I~~~~P~~eer~~Il~~----~l~---------~~~~~~~~~~l~~LA~~--t~G~sgadI~~L~~eA~~~a~rr~~~~ 610 (1205)
++.|++|+.+++.+|+.. ++. .....++.++++.|+.. ...+..++|++++..++..++.+....
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999986 211 22234678888888864 345567899999999998888764321
Q ss_pred eeccCCceEEeccceeeeehhhhhhhc
Q 000974 611 VYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (1205)
Q Consensus 611 i~~~~~~~~~d~~~~~It~~df~~al~ 637 (1205)
. +...+.|+.+++...+.
T Consensus 330 ----~-----~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 330 ----E-----DVEKVVIDESVIDGQSE 347 (363)
T ss_dssp ----C-----CSEEEECHHHHTTCCSC
T ss_pred ----c-----CCceeEEcHHHHhCcCC
Confidence 0 11234577777665543
No 103
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=7.2e-16 Score=177.84 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=156.4
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..+|++|+|++.++..|..++..... ...+..+|||+||||||||++|+++|+.++ ..|+.+++..+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~ 91 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMI 91 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhc
Confidence 34899999999999999988765211 114556899999999999999999999875 45667776544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----------------C
Q 000974 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------R 518 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~----------------~ 518 (1205)
.. .+ .+..++.. ...+++|||||||.+. ..++..|+..|+.... .
T Consensus 92 ~~--~~----~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 92 EK--SG----DLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp CS--HH----HHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred cc--hh----HHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 21 11 22223322 2456799999999884 3455667777764321 1
Q ss_pred CcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000974 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 519 ~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
..++||++||....++++|++ ||+..+.|++|+.+++..|++.++...+..++.+.+..|+..+.| +.+.+.+++..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 229 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKR 229 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 148999999999999999999 999999999999999999999998888777888888889886665 55777888877
Q ss_pred HHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcc
Q 000974 599 AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST 638 (1205)
Q Consensus 599 A~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~ 638 (1205)
+...+..... ..|+.+++..++..
T Consensus 230 ~~~~a~~~~~----------------~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 230 VRDFADVNDE----------------EIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHTTC----------------SEECHHHHHHHHHH
T ss_pred HHHHHHhhcC----------------CccCHHHHHHHHHH
Confidence 7655543221 13666777666654
No 104
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.64 E-value=2.2e-17 Score=190.97 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=83.5
Q ss_pred ccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000974 912 YDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 912 ~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
.++.+++|..||++..+|+||+||++||||+||++||++|.|.++.+|.+||+|||+||++||++ +|.|+.+|..|+
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~---~s~i~~~A~~L~ 303 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP---SALIYKDATTLT 303 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT---TSHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999998 788999999999
Q ss_pred hhHhhhhhcc
Q 000974 992 DAVHGMLSQM 1001 (1205)
Q Consensus 992 ~~~~~~~~~~ 1001 (1205)
+.|+..|++.
T Consensus 304 ~~f~~~~~~~ 313 (361)
T 2r10_A 304 NYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 105
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.64 E-value=7.2e-16 Score=184.36 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=159.5
Q ss_pred ccccccccccC-ChhHH--HHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000974 372 VDESVSFDDIG-GLSEY--IDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 372 ~~~~~~~~~i~-Gl~~~--k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
..+..+|++++ |..+. +..+..+...| + . .++++|+||||||||+||+++|+.+........++.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 44677999976 64443 33444433321 1 2 568999999999999999999999865533456677
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000974 449 RKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 449 i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
+++..+...+.+.........|.......++||||||+|.+.+.. .....|+..++.+...+..+||++.+
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp EEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred eeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 888877666555444332233444333367899999999986431 12334555555444456677777666
Q ss_pred cccc---ccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHH
Q 000974 529 RVDA---IDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRA 603 (1205)
Q Consensus 529 ~~~~---ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a 603 (1205)
.+.. ++++|++ ||. .++.+++|+.+++.+||+..+...+..++.+++..|+..+.| +.+++.+++..+...+
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6665 7788888 885 789999999999999999988877777888888999988765 7788888888877665
Q ss_pred HHHhCCceeccCCceEEeccceeeeehhhhhhhcccC
Q 000974 604 FREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 604 ~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
.... ..|+.+++..++..+.
T Consensus 314 ~~~~-----------------~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTG-----------------KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSS-----------------SCCCHHHHHHHTSTTT
T ss_pred HHhC-----------------CCCCHHHHHHHHHHHh
Confidence 4321 1377788888887665
No 106
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.62 E-value=5.3e-16 Score=173.61 Aligned_cols=193 Identities=21% Similarity=0.277 Sum_probs=130.6
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh-hHHH
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD-VLSK 457 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~-l~~~ 457 (1205)
..++|....+..+...... ....+...+..++.++||+||||||||++|+++|+.++ .+|+.+++.+ +.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~~~i~~~~~~~g~ 104 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-----FPFIKICSPDKMIGF 104 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSEEEEECGGGCTTC
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeCHHHhcCC
Confidence 4567877776666553111 01112222345677999999999999999999999875 4566666654 2222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-cCCcEEEEccccccccccc-
Q 000974 458 WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-SRGQVVLIGATNRVDAIDG- 535 (1205)
Q Consensus 458 ~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-~~~~viVI~atn~~~~ld~- 535 (1205)
..+.....++.+|..+....++||||||||.|++.+... ......++..|+..++... ....++||++||.++.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 105 SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchh
Confidence 233445677888988887778999999999997654322 1223456677777777554 2346889999999998888
Q ss_pred cccCCCCccccccCCCCCc-hhhhhhhhccccccCCCCchhHHHHHhhhhhcc
Q 000974 536 ALRRPGRFDREFNFPLPGC-EARAEILDIHTRKWKQPPSRELKSELAASCVGY 587 (1205)
Q Consensus 536 aL~r~gRf~~~I~~~~P~~-eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~ 587 (1205)
.+.+ ||...|.+|.++. ++...|+.. . ..++.+.+..++..+.|+
T Consensus 184 ~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 184 EMLN--AFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp TCTT--TSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTS
T ss_pred hhhc--ccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCC
Confidence 5665 9988888876665 444444433 2 134667778899998886
No 107
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.61 E-value=4e-16 Score=207.92 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=117.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccc----------cccccc------cc------------cCCCcceeeecCCCCh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLY----------PDFFAS------YH------------ITPPRGVLLCGPPGTG 425 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~----------~~~~~~------~g------------~~~~~~vLL~GppGtG 425 (1205)
..++|++|+|++++|..+.+.+.+|+.+ ++.|.. .| ++..+.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999999844 667765 22 3334449999999999
Q ss_pred hHHHHHHHHhhhhhcCCeEEEEEecc--hhhH--------HHHHHH----HHHHHHHHHHHHhhcCCceEEEeccCCccc
Q 000974 426 KTLIARALACAASKAGQKVSFYMRKG--ADVL--------SKWVGE----AERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 426 KT~laralA~~l~~~~~~~~~~~i~~--~~l~--------~~~~g~----~e~~l~~lf~~a~~~~p~VL~IDEid~L~~ 491 (1205)
||+||+++|.+....+....|+.+.. .+++ .+|+++ +++.++.+|..|+...||+||+|++++|+|
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 99999999999887776777877765 3444 566677 899999999999999999999999999999
Q ss_pred ccchh---h---hHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000974 492 VRSSK---Q---EQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 492 ~r~~~---~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
.+... + .....++++++|..|+++....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 84321 1 145667899999999987777788888 77764
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.61 E-value=1.6e-15 Score=162.42 Aligned_cols=195 Identities=24% Similarity=0.177 Sum_probs=137.0
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
....|++++|.+..+..|..++.. ....++||+||+|||||++|+++++.+...+....++.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 456788999999999999888754 1233599999999999999999999886555455566666654
Q ss_pred hHHHHHHHHHHHHHHHHHH--HhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEE--AQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~--a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
.... ......+..+... .....+.||||||+|.+.+ .....|+..++.. ..++++|++||.+.
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp TTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred ccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 3221 1111112221111 1124578999999998852 2344566666642 35678888899988
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHH
Q 000974 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~ 600 (1205)
.+++++.+ ||. .+.|++|+.++...++..++...+..++.+.+..++..+.| +.+.+.+++..++
T Consensus 144 ~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 144 RIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp GSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred hcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 89999988 886 89999999999999999988777777788888888877655 3444444444443
No 109
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=9.7e-16 Score=184.75 Aligned_cols=194 Identities=25% Similarity=0.300 Sum_probs=142.2
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
..+|++|+|.+..+..+.+++.. ....++||+||||||||++|++||+.+.... ....|+.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688999999999999887754 3456899999999999999999999985422 24567777
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++. ..|.|+.+..++.+|..+....++||||| . ...+.+.|+..| ..+.+.||++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L----~~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL----ARGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh----cCCCEEEEecCCH
Confidence 776 67788888899999999998889999999 1 111223333333 3678999999998
Q ss_pred cc-----cccccccCCCCccccccCCCCCchhhhhhhhccccc----cCCCCchhHHHHHhhhhhcccch-----hHHHH
Q 000974 530 VD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK----WKQPPSRELKSELAASCVGYCGA-----DLKAL 595 (1205)
Q Consensus 530 ~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~----~~~~~~~~~l~~LA~~t~G~sga-----dI~~L 595 (1205)
.+ .++++|++ ||. .|.|+.|+.+++..||+.++.. .+..++++.+..++..+.+|... ....+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 76 58999999 996 5999999999999999987776 56678888889999888887654 66677
Q ss_pred hHHHHHHHHHH
Q 000974 596 CTEAAIRAFRE 606 (1205)
Q Consensus 596 ~~eA~~~a~rr 606 (1205)
+.+|+..+..+
T Consensus 378 l~~a~~~~~~~ 388 (468)
T 3pxg_A 378 IDEAGSKVRLR 388 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777555443
No 110
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=3.6e-15 Score=171.13 Aligned_cols=202 Identities=13% Similarity=0.189 Sum_probs=142.3
Q ss_pred cccccccccC-Ch--hHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000974 373 DESVSFDDIG-GL--SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 373 ~~~~~~~~i~-Gl--~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
.+..+|++++ |. ...+..+..++..| .....+++|+||||||||++|+++++.+...+ ..++.+
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~--~~~~~i 71 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG--YRVIYS 71 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEE
Confidence 3677899986 53 34455555554432 12456899999999999999999999985543 456777
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc
Q 000974 450 KGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR 529 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 529 (1205)
++.++...+.+.........|..... .++||||||+|.+.+.+ .....|+..++.....+..+||++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 72 SADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp EHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 88887766665554333333333332 36799999999986421 122334444444334556778877777
Q ss_pred cc---cccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHH
Q 000974 530 VD---AIDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 530 ~~---~ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
+. .++++|.+ ||. .++.|++ +.+++.+||+.++...+..++.++++.|+..+ | +.+++.+++..++..
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 76 57889988 885 5788999 99999999999998888888999999999988 4 567777777765543
No 111
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.58 E-value=5e-15 Score=169.50 Aligned_cols=192 Identities=23% Similarity=0.269 Sum_probs=140.8
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..+|++++|.+.++..|..++.... . ....+.++||+||||||||++|+++++.++ ..|+.+++..+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~ 74 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAI 74 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTC
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecccc
Confidence 3478999999999999988875421 0 113457899999999999999999999885 45666666544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc----------------cC
Q 000974 455 LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD----------------SR 518 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~----------------~~ 518 (1205)
.. ...+...|..+ ...+++|||||||.+.+ ..+..|+..++... ..
T Consensus 75 ~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 75 EK------PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp CS------HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred CC------hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 21 11122222221 24567999999998852 23445566665321 01
Q ss_pred CcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000974 519 GQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 519 ~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
.++++|++||.+..++++|.+ ||..++.|+.|+.+++..++..++...+..++.+.+..|+..+.| +.+.+.+++..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 357899999999999999988 998899999999999999999998888888888888999998866 44677777665
Q ss_pred HH
Q 000974 599 AA 600 (1205)
Q Consensus 599 A~ 600 (1205)
+.
T Consensus 214 ~~ 215 (324)
T 1hqc_A 214 VR 215 (324)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 112
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.57 E-value=3.5e-15 Score=155.87 Aligned_cols=165 Identities=24% Similarity=0.327 Sum_probs=119.4
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
...|++++|.++.+..+.+.+.. ..+.++||+||||||||++|+++++.+.... ....++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 35688999999999998887543 3456899999999999999999999985421 13566777
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000974 450 KGADVL--SKWVGEAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 450 ~~~~l~--~~~~g~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
++..+. ..+.+.....+..++..+.. ..++||||||+|.|.+.+.... ...+...|...++ .+++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~---~~~~~~~l~~~~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc---hHHHHHHHHHhhc----cCCeEEEEe
Confidence 777665 34567777778888876644 4577999999999975542211 1122333444443 356778888
Q ss_pred ccccc-----cccccccCCCCccccccCCCCCchhhhhhhh
Q 000974 527 TNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILD 562 (1205)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~ 562 (1205)
||.+. .+++++.+ ||. .|.|+.|+.+++.+||+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTCC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHhC
Confidence 88776 67899998 997 69999999999999874
No 113
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=4.3e-15 Score=174.17 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=151.3
Q ss_pred ccCChhHHHHHhhhhhccccccccccc-----------------ccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFA-----------------SYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~-----------------~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (1205)
.|+|++.+++.|..++..++....... .-...++.++||+||||||||++|+++|+.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 489999999999988743221111000 00113467899999999999999999999984
Q ss_pred eEEEEEecchhhH-HHHHHHH-HHHHHHHHHHHh----hcCCceEEEeccCCcccccchhh---hHHHHHHHHHHHHHhh
Q 000974 443 KVSFYMRKGADVL-SKWVGEA-ERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQ---EQIHNSIVSTLLALMD 513 (1205)
Q Consensus 443 ~~~~~~i~~~~l~-~~~~g~~-e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~---~~~~~~v~~~Ll~~ld 513 (1205)
.+|+.+++..+. ..++|.. ...+..++..+. ...++||||||||.+.+.+.... +.....++..|+..|+
T Consensus 98 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 98 -IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred -CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 467777776654 3455543 334455554432 23567999999999986532211 1112237888999988
Q ss_pred Ccc-------------------cCCcEEEEcccccc-----------------------------------------ccc
Q 000974 514 GLD-------------------SRGQVVLIGATNRV-----------------------------------------DAI 533 (1205)
Q Consensus 514 ~~~-------------------~~~~viVI~atn~~-----------------------------------------~~l 533 (1205)
+.. ...++++|+++|.. ..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTC
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCC
Confidence 531 12456777776620 123
Q ss_pred cccccCCCCccccccCCCCCchhhhhhhhc----cc---------cccCCCCchhHHHHHhhhhh--cccchhHHHHhHH
Q 000974 534 DGALRRPGRFDREFNFPLPGCEARAEILDI----HT---------RKWKQPPSRELKSELAASCV--GYCGADLKALCTE 598 (1205)
Q Consensus 534 d~aL~r~gRf~~~I~~~~P~~eer~~Il~~----~l---------~~~~~~~~~~~l~~LA~~t~--G~sgadI~~L~~e 598 (1205)
.+.|.+ ||+.++.|++++.++...|+.. ++ ......++.+++..|+.... ....+.|.+++..
T Consensus 257 ~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 257 IPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred ChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 455666 8888899999999999998863 21 12234567888888888765 3578999999999
Q ss_pred HHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 599 AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 599 A~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
++..++.+.... ....+.|+.+++..++..+
T Consensus 335 ~~~~~~~~~~~~----------~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 335 FCLDIMFDLPKL----------KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHHHHHTGGGG----------TTSEEEECHHHHTTSSCCE
T ss_pred HHHHHHhhccCC----------CCCEEEEeHHHhcCCCCce
Confidence 888877754321 1123467888877655443
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.57 E-value=3.9e-15 Score=162.04 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=140.9
Q ss_pred ccccccccCCh---hHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 374 ESVSFDDIGGL---SEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 374 ~~~~~~~i~Gl---~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
+..+|++++|. ..++..|..++.. ....+++|+||||||||++|+++++.+...+..+ +.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~--~~~~ 87 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRS--FYIP 87 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE--EEEE
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEE
Confidence 45788888862 4666666665543 2457899999999999999999999987665444 4455
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcE-EEEccccc
Q 000974 451 GADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIGATNR 529 (1205)
Q Consensus 451 ~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-iVI~atn~ 529 (1205)
+.++...+. .++.. ...+.||||||++.+.... .....|+..++.....+.+ +|++++..
T Consensus 88 ~~~~~~~~~--------~~~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 88 LGIHASIST--------ALLEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGGGGSCG--------GGGTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHHHH--------HHHHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 555443221 11111 1346799999999885321 1123344444433333444 55544444
Q ss_pred cc---cccccccCCCCcc--ccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHH
Q 000974 530 VD---AIDGALRRPGRFD--REFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAF 604 (1205)
Q Consensus 530 ~~---~ld~aL~r~gRf~--~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~ 604 (1205)
+. .+++.+.+ ||. ..+.|+.|+.+++.+|+..++...+..++.+.++.|+..+.| +.+++.+++..++..+.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 43 34577777 775 789999999999999999998877778888888999988765 67788888888777664
Q ss_pred HHhCCceeccCCceEEeccceeeeehhhhhhhc
Q 000974 605 REKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (1205)
Q Consensus 605 rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~ 637 (1205)
.... .|+.+++..++.
T Consensus 226 ~~~~-----------------~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQR-----------------KLTIPFVKEMLR 241 (242)
T ss_dssp HHTC-----------------CCCHHHHHHHHT
T ss_pred HhCC-----------------CCcHHHHHHHhh
Confidence 4321 367777766653
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=2.1e-14 Score=167.69 Aligned_cols=232 Identities=22% Similarity=0.185 Sum_probs=155.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc----CCeEEEEEe
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQKVSFYMR 449 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~~~~~~i 449 (1205)
+...+++++|.+..+..|..++...+ ....+.+++|+||||||||++|+++++.+... +....++.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 34455789999999999988775411 11446789999999999999999999988443 224677788
Q ss_pred cchhhH------HHHHH----------H-HHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000974 450 KGADVL------SKWVG----------E-AERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 450 ~~~~l~------~~~~g----------~-~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
++.... ..... . ....+..++..+.. ..++||||||+|.+...+ ....++..++.+
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRI 158 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHG
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhc
Confidence 875422 11111 0 22334445544433 347899999999885321 023455566665
Q ss_pred hhCcccCCcEEEEcccccc---ccccccccCCCCccc-cccCCCCCchhhhhhhhccccc--cCCCCchhHHHHHhhhhh
Q 000974 512 MDGLDSRGQVVLIGATNRV---DAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV 585 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn~~---~~ld~aL~r~gRf~~-~I~~~~P~~eer~~Il~~~l~~--~~~~~~~~~l~~LA~~t~ 585 (1205)
+.......+++||++||.+ ..+++.+.+ ||.. .|.|++|+.+++.+|++..+.. ....++.+.+..++..+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5533214577888888887 668888888 8875 8999999999999999988764 344566777788888777
Q ss_pred ---cccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 586 ---GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 586 ---G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
| ..+.+.++|..|+..+..... ..|+.+++..++..+
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~~----------------~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRRE----------------ERVRREHVYSARAEI 276 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTTC----------------SCBCHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHH
Confidence 4 455667788888766654321 247777887776654
No 116
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=5.9e-15 Score=176.32 Aligned_cols=208 Identities=19% Similarity=0.207 Sum_probs=143.0
Q ss_pred cccccccCChhHHH---HHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 375 SVSFDDIGGLSEYI---DALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k---~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
..+|++++|++.++ ..|..++.. ....++||+||||||||++|++||+.++ ..|+.+++
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~-----~~f~~l~a 83 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYAN-----ADVERISA 83 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEET
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEEe
Confidence 46789999999998 666666543 2225899999999999999999999985 55666665
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000974 452 ADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 452 ~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
..... ..++.+|..+. ...+.||||||||.|.. ..+..|+..|+. +.++||++|
T Consensus 84 ~~~~~-------~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 84 VTSGV-------KEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp TTCCH-------HHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEE
T ss_pred ccCCH-------HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc----CceEEEecC
Confidence 43221 12333333332 34578999999999842 234557777773 456777766
Q ss_pred --cccccccccccCCCCccccccCCCCCchhhhhhhhccccc-------cCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000974 528 --NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK-------WKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 528 --n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~-------~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
|....++++|++ ||. ++.|+.|+.+++..|+...+.. ....++.+.++.|+..+.| +.+.+.+++..
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 555678999999 884 7889999999999999988766 3455788888888888655 55666666666
Q ss_pred HHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccC
Q 000974 599 AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 599 A~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
++..+.... .....|+.+++..++....
T Consensus 218 a~~~a~~~~--------------~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 218 MADMAEVDD--------------SGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHSCBCT--------------TSCEECCHHHHHHHHTCCC
T ss_pred HHHhccccc--------------CCCCccCHHHHHHHHhhhh
Confidence 554321100 0123588888888876553
No 117
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.56 E-value=3.4e-16 Score=181.02 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhhhhc--cccccccccccCCCCCccchhhccCcchHHHHHhhccCCcee-eeccccccchhhhccccccc
Q 000974 898 RLRMCLRDVCNRMLY--DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYV-TCSAFLQDVDLIVTNAKAYN 974 (1205)
Q Consensus 898 elr~~lr~il~~l~~--~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~Li~~Na~~yN 974 (1205)
.|+..|..+|..+.. ...+++|..||+...+||||+||++||||+||++|| +.|. ++++|..||+|||+||++||
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 345566666666654 344799999999999999999999999999999999 4455 89999999999999999999
Q ss_pred CCCCCcceeeechhhhhhhHhhhhhc
Q 000974 975 GNDYNGTRIVSRGYELRDAVHGMLSQ 1000 (1205)
Q Consensus 975 ~~~~~~s~i~~~A~~l~~~~~~~~~~ 1000 (1205)
++ +|.|+.+|..|++.|++.|.+
T Consensus 156 ~~---~s~i~~~a~~l~~~~~~~~~k 178 (361)
T 2r10_A 156 EY---DSLIVKNSMQVVMLIEFEVLK 178 (361)
T ss_dssp CS---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHHHHhh
Confidence 99 788999999999999987763
No 118
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=9.5e-15 Score=158.21 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=137.9
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeE----------
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV---------- 444 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~---------- 444 (1205)
...|++++|.+..++.|..++... ..+..++|+||+|||||++|+++++.+.......
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 456888999999999998877541 2345799999999999999999999885432100
Q ss_pred ---------EEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000974 445 ---------SFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 445 ---------~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
.++.+.... ......++.++..+. ...+.||||||+|.+. ...+..|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHH
Confidence 112222211 011223444444432 2347899999999873 2345567777
Q ss_pred hhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchh
Q 000974 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgad 591 (1205)
++.. ...+++|++|+.+..+++.+.+ |+ ..+.|++++.++..+++..++...+..++.+.+..|+..+.| +.+.
T Consensus 150 l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~ 223 (250)
T 1njg_A 150 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 223 (250)
T ss_dssp HHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred HhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 7643 4568888889888888888888 75 689999999999999999988877777788888899999877 6777
Q ss_pred HHHHhHHHH
Q 000974 592 LKALCTEAA 600 (1205)
Q Consensus 592 I~~L~~eA~ 600 (1205)
+.+++..|+
T Consensus 224 ~~~~~~~~~ 232 (250)
T 1njg_A 224 ALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 878777664
No 119
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.54 E-value=5.1e-16 Score=175.58 Aligned_cols=83 Identities=27% Similarity=0.335 Sum_probs=76.7
Q ss_pred cccccccccccCCCCCccchhhccCcchHHHHHhhccCCcee-eeccccccchhhhcccccccCCCCCcceeeechhhhh
Q 000974 913 DKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYV-TCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELR 991 (1205)
Q Consensus 913 ~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~ 991 (1205)
+..+++|..||+...+|+||+||++||||+||++|| +.|. ++++|..||+|||+||++||++ +|.|+.+|..|+
T Consensus 45 r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~---~s~i~~~A~~l~ 119 (311)
T 2r0y_A 45 KDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY---DSLIVKNSMQVV 119 (311)
T ss_dssp HHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCT---TSHHHHHHHHHH
T ss_pred CchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCC---CCHHHHHHHHHH
Confidence 456789999999999999999999999999999999 4555 8999999999999999999999 788999999999
Q ss_pred hhHhhhhhc
Q 000974 992 DAVHGMLSQ 1000 (1205)
Q Consensus 992 ~~~~~~~~~ 1000 (1205)
+.|.+.|.+
T Consensus 120 ~~~~~~~~k 128 (311)
T 2r0y_A 120 MLIEFEVLK 128 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988764
No 120
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.54 E-value=5.2e-15 Score=168.31 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=144.3
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH---
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL--- 455 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~--- 455 (1205)
..|+|++.++..|...+...... .. ..-.+..++||+||||||||++|+++|+.+.... .+|+.+++..+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKH 90 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CS-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCCSTT
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CC-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC--cceEEeecccccccc
Confidence 45889999999998887652100 00 0112345799999999999999999999985433 235556665432
Q ss_pred --HHHHHHHH-----HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc---------CC
Q 000974 456 --SKWVGEAE-----RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---------RG 519 (1205)
Q Consensus 456 --~~~~g~~e-----~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---------~~ 519 (1205)
..++|... .....+.........+||||||+|.+. ..++..|+..|+.... ..
T Consensus 91 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 22222100 000122223333445799999999884 3566778887764321 13
Q ss_pred cEEEEccccc--------------------------cccccccccCCCCccccccCCCCCchhhhhhhhcccccc-----
Q 000974 520 QVVLIGATNR--------------------------VDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----- 568 (1205)
Q Consensus 520 ~viVI~atn~--------------------------~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----- 568 (1205)
+++||+|||. ...++++|.+ ||+..+.|++|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998 4567888887 999999999999999999998877653
Q ss_pred ----CCCCchhHHHHHhhhhh--cccchhHHHHhHHHHHHHHHHh
Q 000974 569 ----KQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 569 ----~~~~~~~~l~~LA~~t~--G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
...++.+++..|+.... ..+.++|.+++..++..++.+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 34567788888888665 5788999999998887766553
No 121
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.53 E-value=7.5e-15 Score=203.79 Aligned_cols=340 Identities=15% Similarity=0.139 Sum_probs=170.5
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHh---------------h
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ---------------R 475 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~---------------~ 475 (1205)
...++|||+||||||||++|+.++.... ...++.++.+...+. ..+...+.... .
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~----~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSS----LYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCS----SCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCC----CCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCC
Confidence 4457999999999999999965554431 234445554433221 12333333220 2
Q ss_pred cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccC--------CcEEEEccccccc-----cccccccCCCC
Q 000974 476 NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR--------GQVVLIGATNRVD-----AIDGALRRPGR 542 (1205)
Q Consensus 476 ~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~--------~~viVI~atn~~~-----~ld~aL~r~gR 542 (1205)
+.++|||||||+..... ..+.+....++.+++.. .++... .++++|||||++. .|+++|+| |
T Consensus 1335 gk~~VlFiDEinmp~~d--~yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--r 1409 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLD--KYGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--H 1409 (2695)
T ss_dssp SSCEEEEEETTTCSCCC--SSSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred CceEEEEeccccccccc--ccCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--e
Confidence 23579999999864332 22222333444444421 111111 2589999999995 79999999 8
Q ss_pred ccccccCCCCCchhhhhhhhccccccCCCC-c-----h-------hHHHHHhhh-------hhcccchhHHHHhHH----
Q 000974 543 FDREFNFPLPGCEARAEILDIHTRKWKQPP-S-----R-------ELKSELAAS-------CVGYCGADLKALCTE---- 598 (1205)
Q Consensus 543 f~~~I~~~~P~~eer~~Il~~~l~~~~~~~-~-----~-------~~l~~LA~~-------t~G~sgadI~~L~~e---- 598 (1205)
| .+|.++.|+.+++..|+..++..+-... + . ++...+... -.-|+.+||.++++-
T Consensus 1410 f-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~ 1488 (2695)
T 4akg_A 1410 A-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTA 1488 (2695)
T ss_dssp E-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred e-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhc
Confidence 8 7899999999999999988775432110 0 0 111111110 112455665555443
Q ss_pred ---------------HHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcccCccccccc-eecccccchhhh--h
Q 000974 599 ---------------AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTITPAAHRGA-TVHSRPLSLVVA--P 660 (1205)
Q Consensus 599 ---------------A~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i~ps~~r~~-~~~~~~~~~~~i--~ 660 (1205)
.++.+.|-..+++....++.....--..+...+|..... .....+.. ...--...+..+ .
T Consensus 1489 ~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~--~~~~~~~~~f~df~~~~Y~~v~~~ 1566 (2695)
T 4akg_A 1489 INTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDL--GNISSTSLLFSGLLSLDFKEVNKT 1566 (2695)
T ss_dssp HHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCC--CCCSTTTCCEESSSSSSCEECCHH
T ss_pred CchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccch--hhhccCCceeeecCCCcceecCHH
Confidence 333344433333322221110000000001111110000 00000000 000000001111 2
Q ss_pred HHHHHHHHHhhhhhhc---CCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCC
Q 000974 661 CLQRHLQKAMNYISDI---FPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGL 737 (1205)
Q Consensus 661 ~l~~~L~~~~~~l~~i---~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~ 737 (1205)
.+...+++.+..-... ...+-....+..+.-...-+..| +.++||+|.+||||+.|++..|+.. ++.++.+..
T Consensus 1567 ~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p---~G~~LLvGvgGsGkqSltrLaa~i~-~~~~fqi~~ 1642 (2695)
T 4akg_A 1567 DLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQV---QGHMMLIGASRTGKTILTRFVAWLN-GLKIVQPKI 1642 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSS---SEEEEEECTTTSCHHHHHHHHHHHT-TCEEECCCC
T ss_pred HHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCC---CCCEEEECCCCCcHHHHHHHHHHHh-CCeeEEEEe
Confidence 2334444333321111 11111222222221000001112 4579999999999999999999987 888888863
Q ss_pred ccccCCCCCCChhhHHHHhhccccc-cCCceeeeccchh
Q 000974 738 PALLSDPSAKTPEEALVHIFGEARR-TTPSILYIPQFNL 775 (1205)
Q Consensus 738 ~~l~~~~~~g~se~~~~~lf~~A~~-~~p~ILfiDEid~ 775 (1205)
..+|...+..+.++.++..|.. ..|.|++|++.+-
T Consensus 1643 ---~~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1678 (2695)
T 4akg_A 1643 ---HRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNI 1678 (2695)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTC
T ss_pred ---eCCCCHHHHHHHHHHHHHHcCCCCCceEEEEecccc
Confidence 3345444556778899988854 4566777777654
No 122
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=164.43 Aligned_cols=202 Identities=6% Similarity=0.084 Sum_probs=142.7
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEecchhhH
Q 000974 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMRKGADVL 455 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i~~~~l~ 455 (1205)
|.|+++.+..|..++... +.-..+.++||+||||||||++++++++++.... ..+.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 788999888887766442 2235678999999999999999999999996432 24778888886532
Q ss_pred H----------HHH------HHHHHHHHHHHHHH--hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc
Q 000974 456 S----------KWV------GEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (1205)
Q Consensus 456 ~----------~~~------g~~e~~l~~lf~~a--~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~ 517 (1205)
+ .+. +.....+..+|..+ ....++||||||||.|. .+.++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--cc
Confidence 2 111 22345677778775 34567899999999997 1346666777654 34
Q ss_pred CCcEEEEcccccccc----ccccccCCCCcc-ccccCCCCCchhhhhhhhccccccCC----------------------
Q 000974 518 RGQVVLIGATNRVDA----IDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKWKQ---------------------- 570 (1205)
Q Consensus 518 ~~~viVI~atn~~~~----ld~aL~r~gRf~-~~I~~~~P~~eer~~Il~~~l~~~~~---------------------- 570 (1205)
..+++||+++|..+. +++++++ ||. .+|.|++++.++..+|++..+.....
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~ 238 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQ 238 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC----
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 567899999888653 5667777 886 67999999999999999877765321
Q ss_pred -------------CCchhHHHHHhhhhhcccchhHH---HHhHHHHHHHHHH
Q 000974 571 -------------PPSRELKSELAASCVGYCGADLK---ALCTEAAIRAFRE 606 (1205)
Q Consensus 571 -------------~~~~~~l~~LA~~t~G~sgadI~---~L~~eA~~~a~rr 606 (1205)
.++++.++.+|..+..-+ +|++ .+|+.|+..|-.+
T Consensus 239 ~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~-GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 239 NQKIPDNVIVINHKINNKITQLIAKNVANVS-GSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp ----CTTEEEECEECCHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCHHHHHHHHHHHHhhC-ChHHHHHHHHHHHHHHHHHH
Confidence 246778887877544322 3433 4577777666554
No 123
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=1.5e-14 Score=176.52 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=137.0
Q ss_pred ccccccccCChhHHHHHhhhhhccc-ccccccccccccC---CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFP-LLYPDFFASYHIT---PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~p-l~~~~~~~~~g~~---~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
...+|++|+|++.+++.|.+++... ...+..|...|.. +++++||+||||||||++|+++|++++ ..++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEE
Confidence 4568999999999999999988642 1223444444433 567999999999999999999999984 677888
Q ss_pred cchhhHHHHHHHHHH-------HHHHHHHHH-----hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc
Q 000974 450 KGADVLSKWVGEAER-------QLKLLFEEA-----QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS 517 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~-------~l~~lf~~a-----~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~ 517 (1205)
+++++.......... .+..+|..+ ....++||||||+|.|..... ..+..|+..++. .
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~--~ 178 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRK--T 178 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHH--C
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHh--c
Confidence 887765443322110 022233332 224578999999999975321 224456666653 2
Q ss_pred CCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhH
Q 000974 518 RGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (1205)
Q Consensus 518 ~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~ 597 (1205)
...+++|+++.....+. .+++ +...|.|+.|+.+++.++|...+...+..++.+.+..|+..+.| +++.+++
T Consensus 179 ~~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~i~ 250 (516)
T 1sxj_A 179 STPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVIN 250 (516)
T ss_dssp SSCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHH
T ss_pred CCCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHH
Confidence 33466665554433444 3444 55689999999999999998888777777888888888887654 5555554
Q ss_pred HH
Q 000974 598 EA 599 (1205)
Q Consensus 598 eA 599 (1205)
..
T Consensus 251 ~L 252 (516)
T 1sxj_A 251 LL 252 (516)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 124
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.52 E-value=5.1e-16 Score=186.74 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=105.5
Q ss_pred cceeeeecCCCCCCCccchhhhhhccc--CccccCCCccccCCCCCCChhhHHHHhhccc---cccCCceeeeccchhhH
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPALLSDPSAKTPEEALVHIFGEA---RRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A---~~~~p~ILfiDEid~l~ 777 (1205)
+.++||+||||||||++|+++|+++ + .+|+.++++.++++| .|+++. ++++|..| +...||||||||||.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~ 139 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYSTE-IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELT 139 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCCSS-SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHHHh-hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcc
Confidence 3589999999999999999999998 6 899999999999887 788887 99999999 78889999999999998
Q ss_pred HhHHHH--------------------------HHHHHHHHHH--hcCCCCCeEEeccCCcCCccccC--CCccccCCCce
Q 000974 778 ENAHEQ--------------------------LRAVLLTLLE--ELPSHLPILLLGSSSVPLAEVEG--DPSTVFPLRSV 827 (1205)
Q Consensus 778 ~~~~~~--------------------------~~~~ll~lL~--~~~~~~~v~vIattn~~~~~Ld~--~~~~~f~~r~i 827 (1205)
...... +.+.++..|+ .+.....|+|++|||++ +.+|+ .+..+|.....
T Consensus 140 ~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~-~~ld~a~~r~~rfd~~~~ 218 (456)
T 2c9o_A 140 PCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAV-KRQGRCDTYATEFDLEAE 218 (456)
T ss_dssp EC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCE-EEEEEETTSCCTTSCSSS
T ss_pred cccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCc-ccCChhhcCCcccCccee
Confidence 442211 1112333443 23455677888999998 88888 22334442125
Q ss_pred eeecCCC--ccchhhhHHHHHH
Q 000974 828 YQVEKPS--TEDRSLFLGRLIE 847 (1205)
Q Consensus 828 i~~~~P~--~~eR~~i~~~~l~ 847 (1205)
++++.|+ .++|.+||+.+..
T Consensus 219 ~~v~~p~~~~~~R~~il~~~~~ 240 (456)
T 2c9o_A 219 EYVPLPKGDVHKKKEIIQDVTL 240 (456)
T ss_dssp SEECCCCSCSEEEEEEEEEEEH
T ss_pred EecCCCchhHHHHHHHHHHHHH
Confidence 6678884 5889999886653
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.51 E-value=3.5e-14 Score=162.82 Aligned_cols=174 Identities=19% Similarity=0.221 Sum_probs=126.4
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++|+|++.++..|..++.. ...+..+||+||||||||++|+++|+.++ ..++.++++.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~ 83 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD 83 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc
Confidence 346899999999999999988763 13455678889999999999999999984 6788888765
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQR-----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATN 528 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~~-----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 528 (1205)
.. ...++..+..... ..+.||||||+|.|.+ ......|+..++.. ..++.||++||
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n 144 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITAN 144 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEES
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeC
Confidence 32 2223333333222 2467999999999841 23455677777643 34678888999
Q ss_pred ccccccccccCCCCccccccCCCCCchhhhhhhhcc-------ccccCCCCch-hHHHHHhhhhhc
Q 000974 529 RVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIH-------TRKWKQPPSR-ELKSELAASCVG 586 (1205)
Q Consensus 529 ~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~-------l~~~~~~~~~-~~l~~LA~~t~G 586 (1205)
.+..++++|++ || .++.|+.|+.+++.+|+..+ +...+..++. +.+..++..+.|
T Consensus 145 ~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 145 NIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp SGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred CccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 99999999999 88 47999999998876665433 3444566666 777888877654
No 126
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.49 E-value=2.7e-14 Score=162.53 Aligned_cols=182 Identities=25% Similarity=0.213 Sum_probs=130.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++++|++.++..|..++.. ....++||+||||||||++|+++|+.+........++.+++.+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 346789999999999999887653 1223599999999999999999999975444344556666654
Q ss_pred hHHHHHHHHHHHHHHHHHHHh--hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQ--RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~--~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
..+. ......+..+..... ...+.||||||+|.|.. .....|+..++. ...++++|++||.+.
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~--~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM--YSKSCRFILSCNYVS 143 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSS--SSSSEEEEEEESCGG
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHh--cCCCCeEEEEeCChh
Confidence 3221 111111111111111 24477999999998842 234556666664 245688888899999
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000974 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
.+.+++.+ ||. .+.|++|+.+++..++...+...+..++.+.+..|+..+.|
T Consensus 144 ~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 144 RIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp GSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred hcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999988 884 89999999999999999998888888888888888876655
No 127
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=5.4e-14 Score=160.61 Aligned_cols=192 Identities=22% Similarity=0.190 Sum_probs=134.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++++|++.++..|..++.. ....++||+||||||||++|+++|+.+........++.+++.+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 456789999999999999887754 1223599999999999999999999975443334566666654
Q ss_pred hHHHHHHHHHHHHHHHHHHH--hhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc
Q 000974 454 VLSKWVGEAERQLKLLFEEA--QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD 531 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a--~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 531 (1205)
..+. ......+....... ....+.||||||+|.+. ......|+..++.. ..++.+|+++|.+.
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSCNYSS 151 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCCcc
Confidence 3221 11111111111111 11447799999999884 23455677777642 35677888899888
Q ss_pred cccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhH
Q 000974 532 AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (1205)
Q Consensus 532 ~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~ 597 (1205)
.+.+++.+ ||. .+.|++++.++...++...+...+..++.+.+..|+..+.| +.+.+.+++.
T Consensus 152 ~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 152 KIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp GSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 89999988 775 78999999999999999888877777888888888887755 3333334443
No 128
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.49 E-value=1.3e-14 Score=185.29 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=146.1
Q ss_pred ccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHH
Q 000974 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~ 457 (1205)
...|+|++.++..|...+...... .. ..-.+..++||+||||||||++|+++|+.+... ..+|+.++++.+...
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~---~~-~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAG---LK-DPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEK 563 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTT---CS-CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSS
T ss_pred hCcCcChHHHHHHHHHHHHHHHcc---cC-CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccc
Confidence 356999999999998887652100 00 001222379999999999999999999998543 356788898887765
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc---------cCCcEEEEcccc
Q 000974 458 WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SRGQVVLIGATN 528 (1205)
Q Consensus 458 ~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~viVI~atn 528 (1205)
+... ...++..+....++|||||||+.+ ...++..|+..|+... ...+++||+|||
T Consensus 564 ~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 HSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred cccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 4433 122333444456789999999877 3467788888887522 124678999999
Q ss_pred cccc------------ccccccCCCCccccccCCCCCchhhhhhhhcccccc---------CCCCchhHHHHHhhh--hh
Q 000974 529 RVDA------------IDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW---------KQPPSRELKSELAAS--CV 585 (1205)
Q Consensus 529 ~~~~------------ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~---------~~~~~~~~l~~LA~~--t~ 585 (1205)
.+.. +.++|.+ ||+.+|.|++|+.+++..|++.++..+ ...++.++++.|+.. ..
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 6432 6788887 999999999999999999998776542 345678888888774 34
Q ss_pred cccchhHHHHhHHHHHHHHHH
Q 000974 586 GYCGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 586 G~sgadI~~L~~eA~~~a~rr 606 (1205)
.++.++|++++..+....+.+
T Consensus 707 ~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 707 EYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TTTTTTHHHHHHHHTHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHH
Confidence 567889999988877766654
No 129
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.49 E-value=5.1e-14 Score=162.80 Aligned_cols=223 Identities=22% Similarity=0.241 Sum_probs=139.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc----CCe------
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA----GQK------ 443 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----~~~------ 443 (1205)
+..+|++|+|++.++..+...+.. ....++||+||||||||++|+++|+.+... +..
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 567899999999987765443322 123469999999999999999999987531 000
Q ss_pred ------------------EEEEEecchhhHHHHHHHHHHHHHHHHHHH---------hhcCCceEEEeccCCcccccchh
Q 000974 444 ------------------VSFYMRKGADVLSKWVGEAERQLKLLFEEA---------QRNQPSIIFFDEIDGLAPVRSSK 496 (1205)
Q Consensus 444 ------------------~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a---------~~~~p~VL~IDEid~L~~~r~~~ 496 (1205)
..++.+........++|... +...+... ....++||||||||.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 01111111110111222100 01111111 11135699999999884
Q ss_pred hhHHHHHHHHHHHHHhhCc----cc-------CCcEEEEccccccc-cccccccCCCCccccccCCCC-Cchhhhhhhhc
Q 000974 497 QEQIHNSIVSTLLALMDGL----DS-------RGQVVLIGATNRVD-AIDGALRRPGRFDREFNFPLP-GCEARAEILDI 563 (1205)
Q Consensus 497 ~~~~~~~v~~~Ll~~ld~~----~~-------~~~viVI~atn~~~-~ld~aL~r~gRf~~~I~~~~P-~~eer~~Il~~ 563 (1205)
..++..|+..|+.. .. ..+++||+++|... .++++|++ ||+..+.++.| +.+++.+|++.
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 23455677766631 11 13689999999744 79999999 99888999999 55666688765
Q ss_pred cc-----------------------------cccCCCCchhHHHHHhhhhhcccc---hhHHHHhHHHHHHHHHHhCCce
Q 000974 564 HT-----------------------------RKWKQPPSRELKSELAASCVGYCG---ADLKALCTEAAIRAFREKYPQV 611 (1205)
Q Consensus 564 ~l-----------------------------~~~~~~~~~~~l~~LA~~t~G~sg---adI~~L~~eA~~~a~rr~~~~i 611 (1205)
.+ ......++.+++..|+..+.+... +.+.++++.|...|..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~--- 307 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA--- 307 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC---
Confidence 21 112346778888888888776544 7788888877776655432
Q ss_pred eccCCceEEeccceeeeehhhhhhhcccC
Q 000974 612 YTSDDKFLIDVDSVTVEKYHFIEAMSTIT 640 (1205)
Q Consensus 612 ~~~~~~~~~d~~~~~It~~df~~al~~i~ 640 (1205)
..|+.+|+..++..+.
T Consensus 308 -------------~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 308 -------------TAVGRDHLKRVATMAL 323 (350)
T ss_dssp -------------SBCCHHHHHHHHHHHH
T ss_pred -------------CcCCHHHHHHHHHHHH
Confidence 1377888887776543
No 130
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=3.9e-14 Score=181.09 Aligned_cols=200 Identities=20% Similarity=0.267 Sum_probs=147.1
Q ss_pred cccCChhHHHHHhhhhhccccccccccccccc----CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 454 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l 454 (1205)
..|+|++.++..|..++... ..|+ .+..++||+||||||||++|+++|+.++ .+|+.++++++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~ 524 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY 524 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhh
Confidence 46899999999988877541 1222 2334799999999999999999999984 56788888776
Q ss_pred HHH------------HHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-----
Q 000974 455 LSK------------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----- 517 (1205)
Q Consensus 455 ~~~------------~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~----- 517 (1205)
... |+|..+. ..+...+....++|||||||+.+. ..+++.|+..|+...-
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g 591 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNG 591 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTT
T ss_pred cchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCC
Confidence 432 5553322 223344444557899999999773 4578888888874211
Q ss_pred ----CCcEEEEccccccc-------------------------cccccccCCCCccccccCCCCCchhhhhhhhcccccc
Q 000974 518 ----RGQVVLIGATNRVD-------------------------AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW 568 (1205)
Q Consensus 518 ----~~~viVI~atn~~~-------------------------~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~ 568 (1205)
..+++||+|||... .++++|++ ||+.+|.|++|+.+++..|+..++..+
T Consensus 592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 14688999999743 56788888 999999999999999999999877632
Q ss_pred ---------CCCCchhHHHHHhhhh--hcccchhHHHHhHHHHHHHHHH
Q 000974 569 ---------KQPPSRELKSELAASC--VGYCGADLKALCTEAAIRAFRE 606 (1205)
Q Consensus 569 ---------~~~~~~~~l~~LA~~t--~G~sgadI~~L~~eA~~~a~rr 606 (1205)
...++.+.++.|+... ..+..+.+.+++..++..++.+
T Consensus 670 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 670 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 3456788888888755 3456889999988888765554
No 131
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=5.7e-14 Score=162.46 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=133.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecch
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~ 452 (1205)
...+|++|+|++.+++.|..++.. ....++||+||||||||++|+++|+.+... .....++.+++.
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 456899999999999999887654 122359999999999999999999997532 112345555655
Q ss_pred hhHHHHHHHHHHHHHHHHH------------HHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCc
Q 000974 453 DVLSKWVGEAERQLKLLFE------------EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ 520 (1205)
Q Consensus 453 ~l~~~~~g~~e~~l~~lf~------------~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 520 (1205)
+..+ .+.....+..+.. ......+.||||||+|.+.+ .....|+..|+.. ...
T Consensus 99 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~--~~~ 163 (353)
T 1sxj_D 99 DERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETY--SGV 163 (353)
T ss_dssp SCCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--TTT
T ss_pred cccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhc--CCC
Confidence 4211 1111111111111 01112356999999998852 2345677777743 334
Q ss_pred EEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHH
Q 000974 521 VVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAA 600 (1205)
Q Consensus 521 viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~ 600 (1205)
+.+|.++|.+..+.+++++ ||. .+.|++|+.++...++...+...+..++.+.+..|+..+.|. .+.+.+++..++
T Consensus 164 ~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~ 239 (353)
T 1sxj_D 164 TRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSAS 239 (353)
T ss_dssp EEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTH
T ss_pred ceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 6666788888889999988 885 789999999999999999888777788888889999887763 334444444444
Q ss_pred H
Q 000974 601 I 601 (1205)
Q Consensus 601 ~ 601 (1205)
.
T Consensus 240 ~ 240 (353)
T 1sxj_D 240 K 240 (353)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=8.7e-14 Score=158.61 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=130.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++++|++.++..|..++.. ....++||+||+|||||++|+++|+.+........++.+++.+
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 345788999999999999888653 1223499999999999999999999975433334566666654
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-------hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQ-------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~-------~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
..+ ...++.++.... ...+.||||||+|.+.. .....|+..++. ...++++|++
T Consensus 83 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~--~~~~~~~il~ 143 (323)
T 1sxj_B 83 DRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMEL--YSNSTRFAFA 143 (323)
T ss_dssp CCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHH--TTTTEEEEEE
T ss_pred ccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhc--cCCCceEEEE
Confidence 321 122333343332 23377999999998842 234456666663 2356777888
Q ss_pred ccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000974 527 TNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 527 tn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
||.+..+.+.+.+ |+. .+.|++|+.++..+++...+...+..++.+.+..|+..+.|
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888899999988 774 89999999999999999888777777788888888888765
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.46 E-value=4.4e-14 Score=147.15 Aligned_cols=157 Identities=24% Similarity=0.351 Sum_probs=112.5
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----CeEEEEEe
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----QKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~~~~~~~i 449 (1205)
..+|++++|.+..+..+.+.+.. ....++||+||||||||++|+++++.+.... ....++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 34688999999999888876643 3356899999999999999999999885421 13566677
Q ss_pred cchhhHH--HHHHHHHHHHHHHHHHHhhc-CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcc
Q 000974 450 KGADVLS--KWVGEAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGA 526 (1205)
Q Consensus 450 ~~~~l~~--~~~g~~e~~l~~lf~~a~~~-~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 526 (1205)
++..+.. .+.+.....+..++..+... .++||||||+|.+.+.+..... ...+...|+..++ .+.++||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEe
Confidence 7766653 35566777788888777655 6789999999999755431110 1223344444444 356788888
Q ss_pred ccccc-----cccccccCCCCccccccCCCCC
Q 000974 527 TNRVD-----AIDGALRRPGRFDREFNFPLPG 553 (1205)
Q Consensus 527 tn~~~-----~ld~aL~r~gRf~~~I~~~~P~ 553 (1205)
+|.+. .++++|++ ||. .|.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 88765 58899999 997 48888885
No 134
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.45 E-value=1.1e-13 Score=159.25 Aligned_cols=213 Identities=21% Similarity=0.163 Sum_probs=137.0
Q ss_pred cccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch-hh-
Q 000974 377 SFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA-DV- 454 (1205)
Q Consensus 377 ~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~-~l- 454 (1205)
.+.+|+|++.++..+...+.. ..++||+||||||||++|+++|+.++. .++.+.+. ..
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~-----~~~~i~~~~~~~ 84 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDL-----DFHRIQFTPDLL 84 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTCC
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEecCCCCC
Confidence 456789999999888776532 258999999999999999999998853 34444432 11
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhcC---CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCc---------ccCCcE
Q 000974 455 LSKWVGEAER-QLKLLFEEAQRNQ---PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL---------DSRGQV 521 (1205)
Q Consensus 455 ~~~~~g~~e~-~l~~lf~~a~~~~---p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~---------~~~~~v 521 (1205)
.....|.... .....| ....+ .+||||||++.+. ..++..|+..|+.. .....+
T Consensus 85 ~~~l~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 85 PSDLIGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp HHHHHEEEEEETTTTEE--EEEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred hhhcCCceeecCCCCce--EeccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 1111111000 000000 00112 2699999999874 34556677766632 123467
Q ss_pred EEEccccccc-----cccccccCCCCccccccCCCCCchhhhhhhhcccccc----------------------CCCCch
Q 000974 522 VLIGATNRVD-----AIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKW----------------------KQPPSR 574 (1205)
Q Consensus 522 iVI~atn~~~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~----------------------~~~~~~ 574 (1205)
+||+|+|+.+ .++++|++ ||...+.|+.|+.+++.+||+.++... +..++.
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 229 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISE 229 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCH
T ss_pred EEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCH
Confidence 8888888654 28899999 998889999999999999998876542 334566
Q ss_pred hHHHHHhhhhh-------------------cccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhh
Q 000974 575 ELKSELAASCV-------------------GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEA 635 (1205)
Q Consensus 575 ~~l~~LA~~t~-------------------G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~a 635 (1205)
++++.++..+. |.+.+.+..+++.|...|..... ..|+.+|+..+
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~----------------~~v~~~dv~~~ 293 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR----------------DYVLPEDIKEV 293 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC----------------SBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC----------------CCCCHHHHHHH
Confidence 66666655331 34667777777776665554321 13778888877
Q ss_pred hcccC
Q 000974 636 MSTIT 640 (1205)
Q Consensus 636 l~~i~ 640 (1205)
+..+.
T Consensus 294 ~~~vl 298 (331)
T 2r44_A 294 AYDIL 298 (331)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76553
No 135
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=5.5e-13 Score=153.78 Aligned_cols=213 Identities=18% Similarity=0.222 Sum_probs=146.2
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH
Q 000974 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~ 455 (1205)
.+|++++|.+.++..|...+.... ..-.++.+++|+||||||||||++++|+.++. .+...++..+.
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~--------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~sg~~~~ 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAK--------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPVLV 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHH--------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTTCC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEechHhc
Confidence 478888999988888877654310 01134568999999999999999999999852 33334443321
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----------------CC
Q 000974 456 SKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS----------------RG 519 (1205)
Q Consensus 456 ~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~ 519 (1205)
. + ..+..++.. ....+|+||||+|.|.+ .+...|+..++.... -.
T Consensus 89 ~---~---~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 K---Q---GDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp S---H---HHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------C
T ss_pred C---H---HHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1 0 112222222 12456999999998863 122233333432210 02
Q ss_pred cEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHH
Q 000974 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEA 599 (1205)
Q Consensus 520 ~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA 599 (1205)
.+.+|++|+.+..|++++++ ||...+.|++|+.+++.+||+..+...+..++.+.+..|+..+.| +.+.+.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 36777899999999999999 998889999999999999999888877778888888999998887 446777888777
Q ss_pred HHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 600 AIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 600 ~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
...|..... ..|+.+++..++..+
T Consensus 227 ~~~a~~~~~----------------~~It~~~v~~al~~~ 250 (334)
T 1in4_A 227 RDMLTVVKA----------------DRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHTC----------------SSBCHHHHHHHHHHH
T ss_pred HHHHHHcCC----------------CCcCHHHHHHHHHHh
Confidence 665554321 136677777776654
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=6.3e-13 Score=155.01 Aligned_cols=230 Identities=19% Similarity=0.206 Sum_probs=152.1
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-eEEEEEecch
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KVSFYMRKGA 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~~~~~i~~~ 452 (1205)
+...+++++|.+..++.|.+++...+. ...+..++|+||+|||||+|++++++.+..... ...++.+++.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 445568899999999999887654111 144568999999999999999999998854311 2456666654
Q ss_pred hhH------HHHH----------H-HHHHHHHHHHHHHhhc-CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC
Q 000974 453 DVL------SKWV----------G-EAERQLKLLFEEAQRN-QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (1205)
Q Consensus 453 ~l~------~~~~----------g-~~e~~l~~lf~~a~~~-~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~ 514 (1205)
... .... + .....+..++..+... .|+||||||++.+.... ...++..|+..++.
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~l~~l~~~~~~ 158 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDILYKLSRINSE 158 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHHHHHHhhchhh
Confidence 321 1110 1 0223344444444443 38899999999885321 13456677777765
Q ss_pred cccCCcEEEEcccccc---ccccccccCCCCcc-ccccCCCCCchhhhhhhhcccccc--CCCCchhHHHHHhhhhh---
Q 000974 515 LDSRGQVVLIGATNRV---DAIDGALRRPGRFD-REFNFPLPGCEARAEILDIHTRKW--KQPPSRELKSELAASCV--- 585 (1205)
Q Consensus 515 ~~~~~~viVI~atn~~---~~ld~aL~r~gRf~-~~I~~~~P~~eer~~Il~~~l~~~--~~~~~~~~l~~LA~~t~--- 585 (1205)
+ ...++.||++|+.+ ..+++.+.+ ||. ..|.|++++.++..+||...+... ...++.+++..++..+.
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 4 34578888888876 356777777 675 489999999999999998876532 24567777788888776
Q ss_pred cccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 586 GYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 586 G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
| +.+.+.++|..|+..+..... ..|+.+++..++..+
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~~~----------------~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERMKD----------------TKVKEEYVYMAKEEI 272 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHTTC----------------SSCCHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhcCC----------------CccCHHHHHHHHHHH
Confidence 4 445566678877766554321 237777777776554
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.6e-13 Score=160.64 Aligned_cols=223 Identities=19% Similarity=0.143 Sum_probs=146.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-----C-eEEEE
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-----Q-KVSFY 447 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-----~-~~~~~ 447 (1205)
+....++++|++..++.|..++...+. ...+.+++|+||||||||++|+++++.+.... . ...++
T Consensus 15 ~~~~p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 15 PLSVFKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp HHHHCSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 344558899999999999887754211 13456899999999999999999999874431 1 35677
Q ss_pred EecchhhH-------HHHHHHH------------HHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHH-HHH
Q 000974 448 MRKGADVL-------SKWVGEA------------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSI-VST 507 (1205)
Q Consensus 448 ~i~~~~l~-------~~~~g~~------------e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v-~~~ 507 (1205)
.+++.... ....... ...+..++..+....+ ||||||+|.|.... ...+ +..
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~-------~~~~~l~~ 157 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR-------GGDIVLYQ 157 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST-------TSHHHHHH
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC-------CCceeHHH
Confidence 77765432 1111111 2234444444444434 99999999885321 0122 333
Q ss_pred HHHHhhCcccCCcEEEEcccccc---ccccccccCCCCccccccCCCCCchhhhhhhhccccc--cCCCCchhHHHHHhh
Q 000974 508 LLALMDGLDSRGQVVLIGATNRV---DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAA 582 (1205)
Q Consensus 508 Ll~~ld~~~~~~~viVI~atn~~---~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~--~~~~~~~~~l~~LA~ 582 (1205)
|+... .++.||++||.+ ..+++.+.+ ||...|.|++|+.++..+||..++.. ....++.+.+..++.
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 43322 678899999886 568888887 88779999999999999999987753 234566777788888
Q ss_pred hhhcc--cchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 583 SCVGY--CGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 583 ~t~G~--sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
.+.+. +.+.+.++|..|+..+. . ...|+.+++..++...
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~--~----------------~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLAS--G----------------GGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT--S----------------SSCCCHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhc--C----------------CCccCHHHHHHHHHHH
Confidence 77632 23345556666654432 0 1246777777766554
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=6.6e-13 Score=153.85 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=127.2
Q ss_pred ccccccccCChhHHHHHhhhhh-cccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC-eE-------
Q 000974 374 ESVSFDDIGGLSEYIDALKEMV-FFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ-KV------- 444 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v-~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~------- 444 (1205)
...+|++++|++.++..|+.++ .. + ..+ +++|+||+|||||++++++|+.+..... .+
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQP-----------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 4567999999999999998876 32 1 223 3999999999999999999996532211 00
Q ss_pred ----------------EEEEecchhhHHHHHHHHHHHHHHHHHHHh--------------hcCCceEEEeccCCcccccc
Q 000974 445 ----------------SFYMRKGADVLSKWVGEAERQLKLLFEEAQ--------------RNQPSIIFFDEIDGLAPVRS 494 (1205)
Q Consensus 445 ----------------~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~--------------~~~p~VL~IDEid~L~~~r~ 494 (1205)
.++.+++...... . ...++.++..+. ...+.||||||++.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---- 147 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMGNN---D-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---- 147 (354)
T ss_dssp ----------CCEECSSEEEECCC----C---C-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC----
T ss_pred cccccccceeeeecccceEEecHhhcCCc---c-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC----
Confidence 1222332221100 0 012333333321 2356799999999863
Q ss_pred hhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCc-
Q 000974 495 SKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPS- 573 (1205)
Q Consensus 495 ~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~- 573 (1205)
......|+..|+.. ..++.+|.+|+.+..+.+.+++ || ..+.|++|+.+++..+++..+...+..++
T Consensus 148 -------~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 -------KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp -------HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred -------HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 23345566777644 2357788888888889999988 88 78999999999999999998887777777
Q ss_pred hhHHHHHhhhhhcccchhHHHHhHH
Q 000974 574 RELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 574 ~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
.+.+..|+..+.| +.+++.+++..
T Consensus 216 ~~~l~~i~~~~~G-~~r~a~~~l~~ 239 (354)
T 1sxj_E 216 KDILKRIAQASNG-NLRVSLLMLES 239 (354)
T ss_dssp SHHHHHHHHHHTT-CHHHHHHHHTH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 7788888877755 33334444443
No 139
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.38 E-value=4.9e-13 Score=155.78 Aligned_cols=191 Identities=20% Similarity=0.202 Sum_probs=136.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeE----------
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKV---------- 444 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~---------- 444 (1205)
..+|++++|++.+++.|..++.. + ..+..+||+||+|||||++|+++|+.+.......
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 45788999999999999887753 1 2345689999999999999999999885422100
Q ss_pred ---------EEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHH
Q 000974 445 ---------SFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLAL 511 (1205)
Q Consensus 445 ---------~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ 511 (1205)
.++.+++... .....++.++..+. ...+.||||||+|.|. ......|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~ 142 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHHH
Confidence 1122222110 01122444555543 2346799999999884 2345667777
Q ss_pred hhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchh
Q 000974 512 MDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGAD 591 (1205)
Q Consensus 512 ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgad 591 (1205)
++. ...++++|++|+.+..+.+.+.+ |+ ..+.|++|+.++...++..++...+..++.+.+..|+..+.| +.+.
T Consensus 143 le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~ 216 (373)
T 1jr3_A 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 216 (373)
T ss_dssp HHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHH
T ss_pred Hhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHH
Confidence 774 34568888888888888888888 77 689999999999999999988877777888888888888866 5566
Q ss_pred HHHHhHHHH
Q 000974 592 LKALCTEAA 600 (1205)
Q Consensus 592 I~~L~~eA~ 600 (1205)
+.+++..+.
T Consensus 217 ~~~~l~~~~ 225 (373)
T 1jr3_A 217 ALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 140
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.38 E-value=6.7e-14 Score=156.49 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=101.6
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHH----
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE---- 778 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~---- 778 (1205)
+.++||+||||||||++|+++++.+ +.+|+.++.++.+.++..+.....++.+|..+....++||||||||.++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 142 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES-NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 142 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh-CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC
Confidence 3579999999999999999999997 78888887776543332222335678889988878899999999999842
Q ss_pred --hHHHHHHHHHHHHHHhcC-CCCCeEEeccCCcCCccccC-CCccccCCCceeeecCCCccchhhhHHHHH
Q 000974 779 --NAHEQLRAVLLTLLEELP-SHLPILLLGSSSVPLAEVEG-DPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (1205)
Q Consensus 779 --~~~~~~~~~ll~lL~~~~-~~~~v~vIattn~~~~~Ld~-~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l 846 (1205)
..+..++++|..+++... ...+++||+|||.+ +.|++ .+..+| ...|..|...+|..|.+.+.
T Consensus 143 ~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~-~~l~~~~l~~rf----~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 143 GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK-DVLQEMEMLNAF----STTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH-HHHHHTTCTTTS----SEEEECCCEEEHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh-hhcchhhhhccc----ceEEcCCCccHHHHHHHHHH
Confidence 234566777777777654 35678899999987 66765 233333 34466788888877766554
No 141
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.37 E-value=5e-13 Score=172.68 Aligned_cols=205 Identities=22% Similarity=0.258 Sum_probs=144.5
Q ss_pred ccccCChhHHHHHhhhhhccccccccccccccc----CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI----TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+..|+|++.++..|...+... ..|+ .+..++||+||||||||++|++||..+...+ .+|+.++++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 467899999999998887541 1121 2235899999999999999999999985432 4567777765
Q ss_pred hHH-----H-------HHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc----
Q 000974 454 VLS-----K-------WVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS---- 517 (1205)
Q Consensus 454 l~~-----~-------~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~---- 517 (1205)
+.. . |+|... ...+...+....++|||||||+.+ ...+++.|+..|+...-
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~ 693 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSH 693 (854)
T ss_dssp CCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSS
T ss_pred ccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCC
Confidence 432 2 223222 122333344455689999999877 34678889999884321
Q ss_pred -----CCcEEEEcccccc--------------------------ccccccccCCCCccccccCCCCCchhhhhhhhcccc
Q 000974 518 -----RGQVVLIGATNRV--------------------------DAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (1205)
Q Consensus 518 -----~~~viVI~atn~~--------------------------~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~ 566 (1205)
..+++||+|||.. ..+.++|.. ||+.++.|.+|+.+++..|+..++.
T Consensus 694 g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 694 GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 1368899999962 124566666 8988999999999999999987776
Q ss_pred c---------cCCCCchhHHHHHhhhhh--cccchhHHHHhHHHHHHHHHHh
Q 000974 567 K---------WKQPPSRELKSELAASCV--GYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 567 ~---------~~~~~~~~~l~~LA~~t~--G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
. ....++.++++.|+.... .++.++|.+++..+...++.+.
T Consensus 772 ~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 772 YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3 234577888888988766 6788999999998887776653
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=3.3e-12 Score=149.41 Aligned_cols=227 Identities=17% Similarity=0.112 Sum_probs=149.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCc--ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPR--GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~--~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
+...+++++|.+..+..|..++...+. + ..+. +++|+||+|||||++++++++.+.... ...++.+++
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~ 81 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYING 81 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEET
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeC
Confidence 444557899999999999887754211 1 2233 799999999999999999999885441 245566665
Q ss_pred hhhH------HHHHH-----------HHHHHHHHHHHHHh-hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhh
Q 000974 452 ADVL------SKWVG-----------EAERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (1205)
Q Consensus 452 ~~l~------~~~~g-----------~~e~~l~~lf~~a~-~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld 513 (1205)
.... ..... ........+..... ...|.||||||+|.+. ..++..|+.+++
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQ 150 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHH
Confidence 4321 11110 01122222222222 2457899999999881 345666777776
Q ss_pred Cccc--CCcEEEEcccccc---ccccccccCCCCccc-cccCCCCCchhhhhhhhccccc--cCCCCchhHHHHHhhhhh
Q 000974 514 GLDS--RGQVVLIGATNRV---DAIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTRK--WKQPPSRELKSELAASCV 585 (1205)
Q Consensus 514 ~~~~--~~~viVI~atn~~---~~ld~aL~r~gRf~~-~I~~~~P~~eer~~Il~~~l~~--~~~~~~~~~l~~LA~~t~ 585 (1205)
.+.. ..++.||+++|.+ ..+++.+.+ ||.. .|.|++++.++..+|+...+.. ....++.+.+..++..+.
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 4432 1478888888876 457777766 7764 7999999999999999887754 123567788888988884
Q ss_pred cc--------cchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 586 GY--------CGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 586 G~--------sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
+. ..+.+.++|..|+..+..+.. ..|+.+++..++..+
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~----------------~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGR----------------KHIAPEDVRKSSKEV 274 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTC----------------SSCCHHHHHHHHHHH
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCC----------------CCcCHHHHHHHHHHH
Confidence 22 445677788887776655421 136667777666554
No 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.36 E-value=1.2e-12 Score=157.88 Aligned_cols=196 Identities=20% Similarity=0.142 Sum_probs=122.3
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc-----hhh
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG-----ADV 454 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~-----~~l 454 (1205)
.|+|++.++..+..++.. ..+|||+||||||||++|++||..++.. ..|..+.+ .++
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~---~~f~~~~~~~~t~~dL 84 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNA---RAFEYLMTRFSTPEEV 84 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSC---CEEEEECCTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhh---hHHHHHHHhcCCHHHh
Confidence 478999999887665432 3589999999999999999999988532 22333332 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc--------cCCcEEE
Q 000974 455 LSKWVGEAERQLKLLFEEAQRN---QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD--------SRGQVVL 523 (1205)
Q Consensus 455 ~~~~~g~~e~~l~~lf~~a~~~---~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~viV 523 (1205)
++.+.+..... ...|..+..+ .++|||||||+.+ ...++..|+..|+... .....++
T Consensus 85 ~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 85 FGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp HCCBC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred cCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 33222111111 1222222221 3679999999866 3456777888886321 1112245
Q ss_pred Ecccccccc---ccccccCCCCccccccCCCCCc-hhhhhhhhcccccc-----------------------CCCCchhH
Q 000974 524 IGATNRVDA---IDGALRRPGRFDREFNFPLPGC-EARAEILDIHTRKW-----------------------KQPPSREL 576 (1205)
Q Consensus 524 I~atn~~~~---ld~aL~r~gRf~~~I~~~~P~~-eer~~Il~~~l~~~-----------------------~~~~~~~~ 576 (1205)
|+|||++.. ..+++.+ ||...+.+++|+. +++..|+..+.... ...+++++
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 677775322 3348888 9988899999988 77889998765321 33455666
Q ss_pred HHHHhhhh---------hcccchhHHHHhHHHHHHHHHHh
Q 000974 577 KSELAASC---------VGYCGADLKALCTEAAIRAFREK 607 (1205)
Q Consensus 577 l~~LA~~t---------~G~sgadI~~L~~eA~~~a~rr~ 607 (1205)
++.++... .|.+.+.+..+++.|...|..+.
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 66666554 36778888888887776666654
No 144
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.36 E-value=1.2e-13 Score=136.51 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=74.0
Q ss_pred ccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCCCCCcceeeechhhhhhh
Q 000974 914 KRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGNDYNGTRIVSRGYELRDA 993 (1205)
Q Consensus 914 k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~~~~s~i~~~A~~l~~~ 993 (1205)
..+.+|...++.. |+||. ++||+|.+|++||++|.|.++++|..||.|||+||++||.+ ||+||.+|..|+..
T Consensus 29 ~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e---~S~IyeDAv~Lq~~ 101 (147)
T 3iu6_A 29 CYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRT---DSEIYEDAVELQQF 101 (147)
T ss_dssp BGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCT---TSHHHHHHHHHHHH
T ss_pred cchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHH
Confidence 3456788877766 89998 99999999999999999999999999999999999999999 88999999999999
Q ss_pred HhhhhhccC
Q 000974 994 VHGMLSQMD 1002 (1205)
Q Consensus 994 ~~~~~~~~~ 1002 (1205)
|.....++.
T Consensus 102 f~~~r~eL~ 110 (147)
T 3iu6_A 102 FIKIRDELC 110 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988876543
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.36 E-value=1.7e-13 Score=155.78 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=106.9
Q ss_pred cceeeeecCCCCCCCccchhhhhhccc------CccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhh
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~------~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l 776 (1205)
..++||+||||||||++|+++++.+.. .+++.++...+...+ .|.++..+..+|..+ .++||||||+|.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l 142 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYL 142 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhh
Confidence 346999999999999999999998622 278888888888776 688888888888876 4689999999998
Q ss_pred HHh-----HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC----ccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 777 WEN-----AHEQLRAVLLTLLEELPSHLPILLLGSSSVPL----AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 777 ~~~-----~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~----~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
... ....+.+.|+.+|+... .+++||+|||.+. ..+++.+..+|. .+++|++|+.+++..|++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 143 YRPDNERDYGQEAIEILLQVMENNR--DDLVVILAGYADRMENFFQSNPGFRSRIA--HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CCCC---CCTHHHHHHHHHHHHHCT--TTCEEEEEECHHHHHHHHHHSTTHHHHEE--EEEEECCCCHHHHHHHHHHHHH
T ss_pred ccCCCcccccHHHHHHHHHHHhcCC--CCEEEEEeCChHHHHHHHhhCHHHHHhCC--eEEEcCCcCHHHHHHHHHHHHH
Confidence 532 24566777888887643 4678888887541 123454555554 7899999999999999999987
Q ss_pred H
Q 000974 848 A 848 (1205)
Q Consensus 848 ~ 848 (1205)
.
T Consensus 219 ~ 219 (309)
T 3syl_A 219 D 219 (309)
T ss_dssp H
T ss_pred H
Confidence 5
No 146
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.35 E-value=6e-13 Score=148.05 Aligned_cols=197 Identities=21% Similarity=0.161 Sum_probs=116.6
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhH
Q 000974 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVL 455 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~ 455 (1205)
.+|++|+|.+..+..+.+.+... .....+|||+||||||||++|+++++.+.... .+|+.++++.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCCCC
Confidence 47889999999998887766541 12346899999999999999999999875432 467778877653
Q ss_pred HHH-----HHHHHH-------HHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-------
Q 000974 456 SKW-----VGEAER-------QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD------- 516 (1205)
Q Consensus 456 ~~~-----~g~~e~-------~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~------- 516 (1205)
... +|.... ....+|..+ ..++||||||+.|. ..++..|+..|+...
T Consensus 70 ~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 70 ENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC-
T ss_pred hhHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCc
Confidence 221 111000 011123332 34699999999884 234556777776321
Q ss_pred --cCCcEEEEcccccc-c------cccccccCCCCccccccCCCCCchhh----hhhhhcccc----ccCC----CCchh
Q 000974 517 --SRGQVVLIGATNRV-D------AIDGALRRPGRFDREFNFPLPGCEAR----AEILDIHTR----KWKQ----PPSRE 575 (1205)
Q Consensus 517 --~~~~viVI~atn~~-~------~ld~aL~r~gRf~~~I~~~~P~~eer----~~Il~~~l~----~~~~----~~~~~ 575 (1205)
...++.||++||.. . .+.+.|.. ||.. +.+..|...+| ..+++.++. ..+. .++.+
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 12357888888873 2 24566766 7743 34444544444 334333332 2222 56777
Q ss_pred HHHHHhhhhhcccchhHHHHhHHHHHH
Q 000974 576 LKSELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 576 ~l~~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
.+..|....-..+.++|.+++..++..
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 777776654334667888888877653
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=1.4e-12 Score=150.58 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=126.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
...+|++++|++.++..|...+.. | .. .++||+||||||||++|+++|+.+........+..+++++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 456789999999999999887653 1 12 2499999999999999999999986444344556666554
Q ss_pred hHHHHHHHHHHHHHHHHHHHh------hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccc
Q 000974 454 VLSKWVGEAERQLKLLFEEAQ------RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGAT 527 (1205)
Q Consensus 454 l~~~~~g~~e~~l~~lf~~a~------~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 527 (1205)
..+ . ..++..+.... ...+.|++|||+|.|. ......|+..|+.. ...+.+|++|
T Consensus 87 ~~~--~----~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~~ 147 (340)
T 1sxj_C 87 DRG--I----DVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVLA 147 (340)
T ss_dssp CCS--H----HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred ccc--H----HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC--CCCeEEEEEe
Confidence 211 1 12222222211 1236799999999884 22345677777743 3456777788
Q ss_pred cccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhc
Q 000974 528 NRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVG 586 (1205)
Q Consensus 528 n~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G 586 (1205)
|.+..+.+++++ ||. .+.|..++.++..+++...+...+..++.+.+..++..+.|
T Consensus 148 n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 148 NYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred cCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 998899999998 874 78899999999999998888666667777777777766544
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.28 E-value=7.6e-12 Score=168.62 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=74.0
Q ss_pred cceeeeecCCCCCCCccchhhhhhcc--cCc--cccCCCc--------------cccCCCCCCChhhHHHHhhccccccC
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELE--KFP--VHSLGLP--------------ALLSDPSAKTPEEALVHIFGEARRTT 764 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~--~~~--~~~l~~~--------------~l~~~~~~g~se~~~~~lf~~A~~~~ 764 (1205)
+..+||+||||||||+||.+++.+.- +.. |+..... .+... .....|+.+..++..++...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~-~~~~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCS-QPDTGEQALEICDALARSGA 1505 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEE-CCSSHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceee-cCChHHHHHHHHHHHHhcCC
Confidence 45799999999999999999987641 112 3333211 11110 12356778888888888899
Q ss_pred CceeeeccchhhHHhH-------------HHHHHHHHHHHHHhcCCCCCeEEeccCCcC
Q 000974 765 PSILYIPQFNLWWENA-------------HEQLRAVLLTLLEELPSHLPILLLGSSSVP 810 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~-------------~~~~~~~ll~lL~~~~~~~~v~vIattn~~ 810 (1205)
|++||||+++.+.+.. +.+++..++..|..+....+++|| +||..
T Consensus 1506 ~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1506 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1563 (2050)
T ss_dssp CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE-EEECE
T ss_pred CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEE-EEccc
Confidence 9999999999877531 467777777778777666777776 46655
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.27 E-value=3.1e-12 Score=145.52 Aligned_cols=192 Identities=22% Similarity=0.250 Sum_probs=120.4
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHH-
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW- 458 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~- 458 (1205)
+|+|.+..+..+.+.+... .....+|||+||||||||++|++|+...... ..+|+.++|..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNESLL 69 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCChHHH
Confidence 5789999988888876541 1345689999999999999999999976433 2456777776543321
Q ss_pred ----HHHH-------HHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc---------cC
Q 000974 459 ----VGEA-------ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD---------SR 518 (1205)
Q Consensus 459 ----~g~~-------e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~---------~~ 518 (1205)
+|.. .......|..+. .++||||||+.|. ..++..|+..|+... ..
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCccccc
Confidence 1110 001123444443 3599999999984 235566777777432 12
Q ss_pred CcEEEEcccccc--c-----cccccccCCCCccccccCCCCCchhhhh----hhhccccc----c---CCCCchhHHHHH
Q 000974 519 GQVVLIGATNRV--D-----AIDGALRRPGRFDREFNFPLPGCEARAE----ILDIHTRK----W---KQPPSRELKSEL 580 (1205)
Q Consensus 519 ~~viVI~atn~~--~-----~ld~aL~r~gRf~~~I~~~~P~~eer~~----Il~~~l~~----~---~~~~~~~~l~~L 580 (1205)
.++.||++||.. . .+.+.|.. ||. .+.+..|...+|.+ ++..++.. . ...++.+.+..|
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 357889999874 1 13344444 553 44555555555443 55444332 1 235677888888
Q ss_pred hhhhhcccchhHHHHhHHHHH
Q 000974 581 AASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 581 A~~t~G~sgadI~~L~~eA~~ 601 (1205)
....-.-+.++|.+++..++.
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHH
Confidence 776633366788888887765
No 150
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.25 E-value=5.6e-13 Score=163.39 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=96.4
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC---------CCCCCChhhHHHHhhccccccCCceeeeccc
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS---------DPSAKTPEEALVHIFGEARRTTPSILYIPQF 773 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~---------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEi 773 (1205)
.+.+||+||||||||++|++|+..+ +.+++.+++..+.. .| +|.....+.++|..|....| |||||||
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~~~~~~~~~g~~~~~-ig~~~~~~~~~~~~a~~~~~-vl~lDEi 184 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGGVRDESEIRGHRRTY-VGAMPGRIIQGMKKAGKLNP-VFLLDEI 184 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC---------------------CHHHHHHTTCSSSE-EEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecccchhhhhhhHHHHH-hccCchHHHHHHHHhhccCC-EEEEhhh
Confidence 3579999999999999999999998 67777777654322 33 57777778889998887766 9999999
Q ss_pred hhhHHhHHHHHHHHHHHHHHhcCC-------------CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhh
Q 000974 774 NLWWENAHEQLRAVLLTLLEELPS-------------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 774 d~l~~~~~~~~~~~ll~lL~~~~~-------------~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
|.+.........+.|+..|+.... ..+++||+|||.+ ..|++ +.+.++ .+++|+.|+.+++..
T Consensus 185 d~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~-~~l~~--aL~~R~-~vi~~~~~~~~e~~~ 260 (543)
T 3m6a_A 185 DKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL-ATIPG--PLRDRM-EIINIAGYTEIEKLE 260 (543)
T ss_dssp SSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST-TTSCH--HHHHHE-EEEECCCCCHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc-ccCCH--HHHhhc-ceeeeCCCCHHHHHH
Confidence 999876555556667777764321 1578999999997 78887 444433 478999999999999
Q ss_pred hHHHHHHH
Q 000974 841 FLGRLIEA 848 (1205)
Q Consensus 841 i~~~~l~~ 848 (1205)
|++.++..
T Consensus 261 Il~~~l~~ 268 (543)
T 3m6a_A 261 IVKDHLLP 268 (543)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 151
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=4.3e-12 Score=156.93 Aligned_cols=168 Identities=21% Similarity=0.193 Sum_probs=99.5
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHH
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW 458 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~ 458 (1205)
..|+|++.++..|..++..- .+..+....+....+|||+||||||||+||+++|+.+....+... ...++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~-~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG-KGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT-TCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC-Ccccccccccee
Confidence 45899999988885544321 111111122344558999999999999999999998753211000 001222222111
Q ss_pred HHHH---H-HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCccc-----------CCcEEE
Q 000974 459 VGEA---E-RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDS-----------RGQVVL 523 (1205)
Q Consensus 459 ~g~~---e-~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~-----------~~~viV 523 (1205)
.... . ......+..| ..+||||||||.+. ..++..|+..|+...- ..++.|
T Consensus 372 ~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eeccccccccccCCeeEec---CCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1000 0 0000122223 23599999999884 2355667888874221 235789
Q ss_pred Eccccccc-------------cccccccCCCCccc-cccCCCCCchhhhhhhhcccc
Q 000974 524 IGATNRVD-------------AIDGALRRPGRFDR-EFNFPLPGCEARAEILDIHTR 566 (1205)
Q Consensus 524 I~atn~~~-------------~ld~aL~r~gRf~~-~I~~~~P~~eer~~Il~~~l~ 566 (1205)
|+|||+++ .++++|++ ||+. .+.++.|+.+ ...|++..+.
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 99999986 78999999 9974 4555667766 6666665444
No 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.20 E-value=5.6e-12 Score=175.87 Aligned_cols=339 Identities=15% Similarity=0.160 Sum_probs=162.0
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHH---------------Hh-
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEE---------------AQ- 474 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~---------------a~- 474 (1205)
...++|||+||||||||+++..+...+. ...++.++.+..... ..+...++. +.
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~ 1371 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQ 1371 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESS
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCc
Confidence 3457899999999999988766554442 234555665433221 122222221 00
Q ss_pred hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-------cCCcEEEEccccccc-----cccccccCCCC
Q 000974 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------SRGQVVLIGATNRVD-----AIDGALRRPGR 542 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-------~~~~viVI~atn~~~-----~ld~aL~r~gR 542 (1205)
.+...|||||||+.- .....+.+..-.++.+++..-..+. .-.++.+|+|+|++. .|+++|.| |
T Consensus 1372 ~Gk~~VlFiDDiNmp--~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1372 LGKWLVVFCDEINLP--STDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp TTCEEEEEETTTTCC--CCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred CCceEEEEecccCCC--CccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 122369999999853 2222333223344444443211111 113678999999884 48999999 8
Q ss_pred ccccccCCCCCchhhhhhhhccccccCC------CCchhHHHHHh-------hh-------hhcccchhHHHHhHH----
Q 000974 543 FDREFNFPLPGCEARAEILDIHTRKWKQ------PPSRELKSELA-------AS-------CVGYCGADLKALCTE---- 598 (1205)
Q Consensus 543 f~~~I~~~~P~~eer~~Il~~~l~~~~~------~~~~~~l~~LA-------~~-------t~G~sgadI~~L~~e---- 598 (1205)
| .+|+++.|+.++...|+..++..+.. .+...+..... .. -.-|+.+||..+++-
T Consensus 1448 F-~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1448 A-PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp C-CEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred c-eEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 8 56999999999999997654433211 01111111111 10 112456666655443
Q ss_pred ---------------HHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhcc--cCcccccccee-cccccchhhhh
Q 000974 599 ---------------AAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMST--ITPAAHRGATV-HSRPLSLVVAP 660 (1205)
Q Consensus 599 ---------------A~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~--i~ps~~r~~~~-~~~~~~~~~i~ 660 (1205)
.++.+.|-..+++....++......-..+...+|...-.. ..|...-.... ....+ +..
T Consensus 1527 ~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v---~~~ 1603 (3245)
T 3vkg_A 1527 IQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV---NRS 1603 (3245)
T ss_dssp HHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CC---CHH
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccC---CHH
Confidence 2333333333333222211100000000111112110000 00000000000 00111 112
Q ss_pred HHHHHHHHHhhhhhh---cCCCCccchhhhhhhhcccCCcccccccceeeeecCCCCCCCccchhhhhhcccCccccCCC
Q 000974 661 CLQRHLQKAMNYISD---IFPPLGMSSELTKLCMLSHGSAIPLVYRPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGL 737 (1205)
Q Consensus 661 ~l~~~L~~~~~~l~~---i~p~~~~~~~~~~l~~~~~G~~~P~~~~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~ 737 (1205)
.+.+.+++.+..-.. -.+.+-....+..+.-...-+..| +.++||+|..|+||+.|++..|+.. ++.++.+.
T Consensus 1604 ~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp---~GhaLLVGvgGSGkqSLtrLAa~i~-~~~vfqi~- 1678 (3245)
T 3vkg_A 1604 DLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQP---QGHALLIGVSGGGKSVLSRFVAWMN-GLSIYTIK- 1678 (3245)
T ss_dssp HHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTST---TCCEEEEESTTSSHHHHHHHHHHHT-TCEEECCC-
T ss_pred HHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccC---CCCeEEecCCCCcHHHHHHHHHHHh-CCeeEEEe-
Confidence 233333333222110 011111122222221100001112 4579999999999999999999987 88888876
Q ss_pred ccccCCCCCCChhhHHHHhhccccc-cCCceeeeccch
Q 000974 738 PALLSDPSAKTPEEALVHIFGEARR-TTPSILYIPQFN 774 (1205)
Q Consensus 738 ~~l~~~~~~g~se~~~~~lf~~A~~-~~p~ILfiDEid 774 (1205)
+..+|...+..+.++.++..|.. ..|.|++|++.+
T Consensus 1679 --i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1679 --VNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred --eeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 34456455666778888888853 456666665543
No 153
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.18 E-value=3.4e-12 Score=144.60 Aligned_cols=138 Identities=16% Similarity=0.229 Sum_probs=99.5
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-CCCCCChhhHHHHhhcccc-----ccCCceeeeccchhh
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAKTPEEALVHIFGEAR-----RTTPSILYIPQFNLW 776 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~-~~~~g~se~~~~~lf~~A~-----~~~p~ILfiDEid~l 776 (1205)
+.++||+||||||||++|+++++.+ +.+++.++++.+.. +|.....+..+..+|..+. ...++||||||||.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 3579999999999999999999998 78899998888765 4432233455777776441 124789999999999
Q ss_pred HHhH--------HHHHHHHHHHHHHhcC--------CCCCeEEeccC----CcCCccccCCCccccCCCceeeecCCCcc
Q 000974 777 WENA--------HEQLRAVLLTLLEELP--------SHLPILLLGSS----SVPLAEVEGDPSTVFPLRSVYQVEKPSTE 836 (1205)
Q Consensus 777 ~~~~--------~~~~~~~ll~lL~~~~--------~~~~v~vIatt----n~~~~~Ld~~~~~~f~~r~ii~~~~P~~~ 836 (1205)
.... ...+.+.|+.+|++.. ...+++||+++ +.+ ..+++.+..+|. .+++|++|+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~l~~R~~--~~i~~~~~~~~ 205 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP-SDLIPELQGRLP--IRVELTALSAA 205 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCG-GGSCHHHHHTCC--EEEECCCCCHH
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCc-ccCCHHHHhhCC--ceEEcCCcCHH
Confidence 7432 2234667778887531 23467788874 444 567764445554 67899999999
Q ss_pred chhhhHHH
Q 000974 837 DRSLFLGR 844 (1205)
Q Consensus 837 eR~~i~~~ 844 (1205)
++..|++.
T Consensus 206 ~~~~il~~ 213 (310)
T 1ofh_A 206 DFERILTE 213 (310)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99999983
No 154
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.17 E-value=1.3e-12 Score=152.27 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=71.6
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCCh-hhHHHHhhccc----cccCCceeeeccchhhH
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTP-EEALVHIFGEA----RRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~s-e~~~~~lf~~A----~~~~p~ILfiDEid~l~ 777 (1205)
+.++||+||||||||++|++||+.+ +.+|+.++++.+....+.|.. +..+..+|..+ ....+|||||||||.+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 4579999999999999999999999 899999998887754234554 55677777766 44568999999999987
Q ss_pred Hh----------HHHHHHHHHHHHHHh
Q 000974 778 EN----------AHEQLRAVLLTLLEE 794 (1205)
Q Consensus 778 ~~----------~~~~~~~~ll~lL~~ 794 (1205)
.. ....+.+.|+.+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccchHHHHHHHHHHhcC
Confidence 43 223478889999984
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.13 E-value=3.3e-11 Score=162.45 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=79.3
Q ss_pred hhhcccCccccccceecccccchhhhhHHHHHHHHHhhh--------hhhcCC--CCccc---hhhhhhhhcccCCcccc
Q 000974 634 EAMSTITPAAHRGATVHSRPLSLVVAPCLQRHLQKAMNY--------ISDIFP--PLGMS---SELTKLCMLSHGSAIPL 700 (1205)
Q Consensus 634 ~al~~i~ps~~r~~~~~~~~~~~~~i~~l~~~L~~~~~~--------l~~i~p--~~~~~---~~~~~l~~~~~G~~~P~ 700 (1205)
.++....|+..+......+.++|.....+...+..+-.. +..+.. ....+ ..+.++- ..| .+
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~ll--ggG---Gl 729 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIAL--GAG---GL 729 (2050)
T ss_dssp CCC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHH--SSS---SE
T ss_pred hhcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHh--ccC---Cc
Confidence 455666777788888888899998544444444444221 011100 00000 0111110 000 12
Q ss_pred cccceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC---CCC--------ChhhHHHHhhccccc----c
Q 000974 701 VYRPRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP---SAK--------TPEEALVHIFGEARR----T 763 (1205)
Q Consensus 701 ~~~~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~---~~g--------~se~~~~~lf~~A~~----~ 763 (1205)
....-+||+|+||+|||+||..+|..+. +.+++.++....+... ..| ..+.++.+++..+++ .
T Consensus 730 ~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~ 809 (2050)
T 3cmu_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhcc
Confidence 2234589999999999999999988652 2345555544322211 001 122345556665554 6
Q ss_pred CCceeeeccchhhHH-h------------HHHHHHHHHHHHHHhcCCCCCeEEecc
Q 000974 764 TPSILYIPQFNLWWE-N------------AHEQLRAVLLTLLEELPSHLPILLLGS 806 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~-~------------~~~~~~~~ll~lL~~~~~~~~v~vIat 806 (1205)
.|++||||.+..+.. . ...+.++.++..|..+....+|.||++
T Consensus 810 ~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l 865 (2050)
T 3cmu_A 810 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 865 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 799999999999874 1 113345666667777655555555543
No 156
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.13 E-value=4.4e-12 Score=131.60 Aligned_cols=97 Identities=20% Similarity=0.313 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCccchhhccCcchHHHHHhhccCCceeeeccccccchhhhcccccccCC
Q 000974 897 RRLRMCLRDVCNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDLATLLQRVDSGHYVTCSAFLQDVDLIVTNAKAYNGN 976 (1205)
Q Consensus 897 relr~~lr~il~~l~~~k~~~~F~~Pv~~~~~p~Y~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 976 (1205)
.+++..+..||..|..++.+++|... .++.||||+||++||+.|.|.|+.+|+.||.|||+||..||.+
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~ 142 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGG 142 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 45666678899999999999999873 2599999999999999999999999999999999999999998
Q ss_pred CCCcceeeechhhhhhhHhhhhhccChhHHH
Q 000974 977 DYNGTRIVSRGYELRDAVHGMLSQMDPALVS 1007 (1205)
Q Consensus 977 ~~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 1007 (1205)
.+.+.+++..|+..|.+.++++-+.|..
T Consensus 143 ---~~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 143 ---QPEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred ---ChhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 5568999999999999999988887643
No 157
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.13 E-value=4.1e-12 Score=150.06 Aligned_cols=129 Identities=10% Similarity=0.055 Sum_probs=57.9
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccC-CCCCC-ChhhHHHHhhccccccCCceeeeccchhhHHh-
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLS-DPSAK-TPEEALVHIFGEARRTTPSILYIPQFNLWWEN- 779 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~-~~~~g-~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~- 779 (1205)
+.++||+||||||||++|++||..+ +.+|+.++.+.+.. +| +| ..+..++.+|..|... +++||++.+...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~~~~~~~g~-vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~ 123 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGY-VGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA 123 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGGC-----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC---
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc-CCCceeecchhhcccce-eeccHHHHHHHHHHHHHhc----chhhhhhhhhccc
Confidence 4589999999999999999999999 89999999988887 46 56 5889999999988764 578998887532
Q ss_pred ---HHHHHHHHHHHHHHhcCCCCCeEEecc-CCcCCccccCCCccccCCC--ceeeecCCCcc-chhhhH
Q 000974 780 ---AHEQLRAVLLTLLEELPSHLPILLLGS-SSVPLAEVEGDPSTVFPLR--SVYQVEKPSTE-DRSLFL 842 (1205)
Q Consensus 780 ---~~~~~~~~ll~lL~~~~~~~~v~vIat-tn~~~~~Ld~~~~~~f~~r--~ii~~~~P~~~-eR~~i~ 842 (1205)
..++++++|+..|+++.+...| +++ ||++ +.||+ +.++++| ..|+|++|+.. .|..||
T Consensus 124 ~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~-~~ld~--aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 124 EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTR-QAFRK--KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHhhcccccccc--ccccccCH-HHHHH--HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 5678899999999998765554 455 9998 99999 5566554 88889999987 788876
No 158
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.11 E-value=3e-11 Score=121.69 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=79.5
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHH
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~ 459 (1205)
+++|.+..+..+.+.+... .....+|||+||||||||++|+++++... +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~~~- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLIDM- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHHHC-
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCChHh-
Confidence 4789999999888877541 13456899999999999999999998763 78888988765543
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000974 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 460 g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
...+|..+. .++|||||||.+.+ ..+..|+..|+... ..++.||++||.+
T Consensus 67 ------~~~~~~~a~---~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 ------PMELLQKAE---GGVLYVGDIAQYSR-----------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp ------HHHHHHHTT---TSEEEEEECTTCCH-----------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred ------hhhHHHhCC---CCeEEEeChHHCCH-----------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 345565554 45999999999842 34455666666432 3457788888864
No 159
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.11 E-value=1.2e-10 Score=134.12 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=118.3
Q ss_pred ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCe-------------------
Q 000974 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQK------------------- 443 (1205)
Q Consensus 383 Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~------------------- 443 (1205)
-+.++++.|...+.. | ..+..+||+||+|+|||++|+++|+.+......
T Consensus 6 w~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 345666666665543 1 345579999999999999999999988543210
Q ss_pred EEEEEecchhhHHHHHHHHHHHHHHHHHHHhh----cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCC
Q 000974 444 VSFYMRKGADVLSKWVGEAERQLKLLFEEAQR----NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRG 519 (1205)
Q Consensus 444 ~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~----~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~ 519 (1205)
..++.+.+..- +. ......++.+++.+.. ....|+||||+|.|. ....+.|+..|+. ...
T Consensus 74 ~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe--p~~ 137 (334)
T 1a5t_A 74 PDYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE--PPA 137 (334)
T ss_dssp TTEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS--CCT
T ss_pred CCEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC--CCC
Confidence 12333332200 00 0112345566665542 346799999999884 2345678888884 345
Q ss_pred cEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhH
Q 000974 520 QVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCT 597 (1205)
Q Consensus 520 ~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~ 597 (1205)
++++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..++|...+ ..+.+.+..++..+.| +.+.+.+++.
T Consensus 138 ~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 68888888889999999998 87 579999999999999988765 3456666777777665 3333334443
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.09 E-value=1.7e-12 Score=135.33 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=87.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhc---------ccCccccCCCccccCC-CCCCChhhHHHHhhcccc-ccCCceeeecc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPALLSD-PSAKTPEEALVHIFGEAR-RTTPSILYIPQ 772 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l---------~~~~~~~l~~~~l~~~-~~~g~se~~~~~lf~~A~-~~~p~ILfiDE 772 (1205)
.++||+||||||||++|+++++.+ .+.+++.+++..++.. ...|..+..+..++..+. ...++||||||
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe 123 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 123 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEET
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 469999999999999999999986 2466677776665532 123445566777776553 34578999999
Q ss_pred chhhHHhHH----HHHHHHHHHHHHhcCCCCCeEEeccCCcCCc-----cccCCCccccCCCceeeecCCCccchhhhHH
Q 000974 773 FNLWWENAH----EQLRAVLLTLLEELPSHLPILLLGSSSVPLA-----EVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 773 id~l~~~~~----~~~~~~ll~lL~~~~~~~~v~vIattn~~~~-----~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
++.+..... ..+.+.|..++. ..++.+|++||.+ . .+++.+..+|. .++|++|+.+++.+||+
T Consensus 124 ~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~l~~r~~---~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 124 LHTMVGAGKADGAMDAGNMLKPALA----RGELHCVGATTLD-EYRQYIEKDAALERRFQ---KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp GGGGTT------CCCCHHHHHHHHH----TTSCCEEEEECHH-HHHHHTTTCHHHHTTEE---EEECCCCCHHHHHTTCC
T ss_pred HHHHhccCcccchHHHHHHHHHhhc----cCCeEEEEeCCHH-HHHHHHhcCHHHHHHhc---eeecCCCCHHHHHHHhC
Confidence 999874321 122334444443 3466777888866 3 34552333332 68899999999998863
No 161
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.09 E-value=7e-11 Score=119.21 Aligned_cols=115 Identities=23% Similarity=0.217 Sum_probs=77.9
Q ss_pred ccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHH
Q 000974 380 DIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (1205)
Q Consensus 380 ~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~ 459 (1205)
+|+|.+..+..+.+.+... .....+|||+||||||||++|++|++.....+ .+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~-- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNA-- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTS--
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcc--
Confidence 5789999888888776541 13456899999999999999999999875433 3455 677655432
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccc
Q 000974 460 GEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRV 530 (1205)
Q Consensus 460 g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 530 (1205)
.....+|..+. .++|||||||.|. ..++..|+..|... ..++.||++||.+
T Consensus 66 ----~~~~~~~~~a~---~g~l~ldei~~l~-----------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----PQLNDFIALAQ---GGTLVLSHPEHLT-----------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp ----SCHHHHHHHHT---TSCEEEECGGGSC-----------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred ----hhhhcHHHHcC---CcEEEEcChHHCC-----------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 22334555554 3599999999884 23455677777533 3456778888863
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.08 E-value=9.3e-11 Score=134.98 Aligned_cols=128 Identities=17% Similarity=0.249 Sum_probs=92.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
.++||+||||||||++|+++++.+ +.+|+.++++.+. ....+..++.. ...++|||||||+.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~-- 123 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM-SANIKTTAAPMIE-------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIE-- 123 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC-------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHH--
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-CCCeEEecchhcc-------chhHHHHHHHh--ccCCCEEEEechhhcCHHHH--
Confidence 469999999999999999999998 7788887765442 12344555543 24578999999999875444
Q ss_pred HHHHHHHHHHhcCC----------------CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 784 LRAVLLTLLEELPS----------------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 784 ~~~~ll~lL~~~~~----------------~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
..|+..|+.-.- ..+++||++||.. ..+++.+..+| ..+++|++|+.+++..|++.++.
T Consensus 124 --~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~-~~l~~~L~~R~--~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 124 --EVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA-GMLSNPLRDRF--GMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp --HHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG-GGSCHHHHTTC--SEEEECCCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc-cccCHHHHhhc--CEEeeCCCcCHHHHHHHHHHHHH
Confidence 445556654320 1148899999987 66776333333 37899999999999999998776
Q ss_pred H
Q 000974 848 A 848 (1205)
Q Consensus 848 ~ 848 (1205)
.
T Consensus 199 ~ 199 (338)
T 3pfi_A 199 K 199 (338)
T ss_dssp H
T ss_pred h
Confidence 4
No 163
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.07 E-value=2.4e-10 Score=159.25 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=83.3
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCcccc
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPV 492 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~ 492 (1205)
..++++.||+|||||.+|+++|+.++. .++.++|.+-+.. ..+..+|..+...+ ++++||||+.+-+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~-----~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~~e 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGR-----VVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLDEK 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTC-----CCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCC-----cEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcChH
Confidence 357889999999999999999999974 4556666643321 22344555555443 59999999987421
Q ss_pred cchhhhHHHHHHHHHHHHHhhC-----------cccCCcEEEEccccc----cccccccccCCCCccccccCCCCCchhh
Q 000974 493 RSSKQEQIHNSIVSTLLALMDG-----------LDSRGQVVLIGATNR----VDAIDGALRRPGRFDREFNFPLPGCEAR 557 (1205)
Q Consensus 493 r~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~viVI~atn~----~~~ld~aL~r~gRf~~~I~~~~P~~eer 557 (1205)
- -......+..++..+.. +.....+.|++|.|+ ...|+++|++ || +.|.+..|+.+..
T Consensus 713 v----Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i 785 (2695)
T 4akg_A 713 V----LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTI 785 (2695)
T ss_dssp H----HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHH
T ss_pred H----HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHH
Confidence 0 01111112222233311 111234667888885 3358899988 78 6799999998888
Q ss_pred hhhh
Q 000974 558 AEIL 561 (1205)
Q Consensus 558 ~~Il 561 (1205)
.+|+
T Consensus 786 ~ei~ 789 (2695)
T 4akg_A 786 AEMI 789 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.06 E-value=1.3e-10 Score=144.31 Aligned_cols=220 Identities=24% Similarity=0.295 Sum_probs=131.7
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD 453 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~ 453 (1205)
+...|++++|++.++..|...+.. ..+++|+||||||||+||++||..+........++.....+
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred cccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 456789999999999888776542 35899999999999999999999875432111111110000
Q ss_pred ----------------hHHHHHHHH--------------------------------------HHHHHHHHH--------
Q 000974 454 ----------------VLSKWVGEA--------------------------------------ERQLKLLFE-------- 471 (1205)
Q Consensus 454 ----------------l~~~~~g~~--------------------------------------e~~l~~lf~-------- 471 (1205)
+........ ......+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 000000000 000011111
Q ss_pred ---------------HHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-------------------c
Q 000974 472 ---------------EAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-------------------S 517 (1205)
Q Consensus 472 ---------------~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-------------------~ 517 (1205)
.+....+.+|||||++.|. ..++..|+..|+... .
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 0111235699999999873 345556777765211 1
Q ss_pred CCcEEEEcccccc--ccccccccCCCCcc---ccccCCCCC---chhhhhhhhccccc-----cCCCCchhHHHHHhhhh
Q 000974 518 RGQVVLIGATNRV--DAIDGALRRPGRFD---REFNFPLPG---CEARAEILDIHTRK-----WKQPPSRELKSELAASC 584 (1205)
Q Consensus 518 ~~~viVI~atn~~--~~ld~aL~r~gRf~---~~I~~~~P~---~eer~~Il~~~l~~-----~~~~~~~~~l~~LA~~t 584 (1205)
..++.||++||+. ..++++|++ ||. ..+.|+... .+....+++.+... ....++.+.+..|+...
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 1367899999986 579999998 885 344544322 22344454433332 22467788888887755
Q ss_pred ---hc------ccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhc
Q 000974 585 ---VG------YCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMS 637 (1205)
Q Consensus 585 ---~G------~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~ 637 (1205)
.| .+.+++.++++.|...|..+.. ..|+.+|+..++.
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~----------------~~I~~edv~~A~~ 373 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK----------------KYVEREDVIEAVK 373 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTC----------------SSBCHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCc----------------ccccHHHHHHHHH
Confidence 34 2568899999988766654322 2478888888874
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.03 E-value=9.9e-10 Score=129.46 Aligned_cols=216 Identities=16% Similarity=0.086 Sum_probs=132.6
Q ss_pred cccccccCChhHHHHHhhhhh-cccccccccccccccCCCcceee--ecCCCChhHHHHHHHHhhhhhc----CCeEEEE
Q 000974 375 SVSFDDIGGLSEYIDALKEMV-FFPLLYPDFFASYHITPPRGVLL--CGPPGTGKTLIARALACAASKA----GQKVSFY 447 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v-~~pl~~~~~~~~~g~~~~~~vLL--~GppGtGKT~laralA~~l~~~----~~~~~~~ 447 (1205)
....+.++|.+..++.|.+++ ...+.. . ...+..++| +||+|||||+|++++++.+... +....++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~------~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSG------A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTS------S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcC------C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 344577999999999998876 431110 0 023457899 9999999999999999887542 1124555
Q ss_pred Eecchh------hHHHHHHH-----------HHHHHHHHHHHHh-hcCCceEEEeccCCcccccchhhhHHHHHHHHHHH
Q 000974 448 MRKGAD------VLSKWVGE-----------AERQLKLLFEEAQ-RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLL 509 (1205)
Q Consensus 448 ~i~~~~------l~~~~~g~-----------~e~~l~~lf~~a~-~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll 509 (1205)
.+++.. ++...... ....+..+..... ...+.||||||+|.|...... ...++..|+
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~ 165 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLL 165 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHH
Confidence 555422 22211110 1112222222222 245789999999988532100 123455555
Q ss_pred HHhhCccc-C--CcEEEEccccccc---ccc---ccccCCCCccccccCCCCCchhhhhhhhcccccc--CCCCchhHHH
Q 000974 510 ALMDGLDS-R--GQVVLIGATNRVD---AID---GALRRPGRFDREFNFPLPGCEARAEILDIHTRKW--KQPPSRELKS 578 (1205)
Q Consensus 510 ~~ld~~~~-~--~~viVI~atn~~~---~ld---~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~--~~~~~~~~l~ 578 (1205)
..+..... . .++.||++++.++ .++ +.+.+ +|...+.|++++.++..+||...+... ...++.+.+.
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 55554321 2 5788888887654 244 55555 565559999999999999997665432 2245667778
Q ss_pred HHhhhhh------cccchhHHHHhHHHHHHHHH
Q 000974 579 ELAASCV------GYCGADLKALCTEAAIRAFR 605 (1205)
Q Consensus 579 ~LA~~t~------G~sgadI~~L~~eA~~~a~r 605 (1205)
.++..+. | ....+..+|..|+..+..
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 8888877 5 445677777777665544
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.03 E-value=8.1e-11 Score=133.73 Aligned_cols=139 Identities=9% Similarity=0.084 Sum_probs=95.6
Q ss_pred cceeeeecCCCCCCCccchhhhhhcc---------cCccccCCCccccCC---------------CCCCChhhHHHHhhc
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELE---------KFPVHSLGLPALLSD---------------PSAKTPEEALVHIFG 758 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~---------~~~~~~l~~~~l~~~---------------~~~g~se~~~~~lf~ 758 (1205)
+++++|+||||||||++++++++++. .+.++.+++..+.+. ...|.+...+..+|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 35799999999999999999999873 345666765543321 113455677888888
Q ss_pred cc--cccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCc----cccCCCccccCCCceeeecC
Q 000974 759 EA--RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLA----EVEGDPSTVFPLRSVYQVEK 832 (1205)
Q Consensus 759 ~A--~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~----~Ld~~~~~~f~~r~ii~~~~ 832 (1205)
.+ ....++||||||||.+. ...++..|+.+.. .....++||+++|.. + .|++.+.+++. ..+|.|++
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~---~q~~L~~l~~~~~--~~~s~~~vI~i~n~~-d~~~~~L~~~v~SR~~-~~~i~F~p 197 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL---SEKILQYFEKWIS--SKNSKLSIICVGGHN-VTIREQINIMPSLKAH-FTEIKLNK 197 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC---CTHHHHHHHHHHH--CSSCCEEEEEECCSS-CCCHHHHHTCHHHHTT-EEEEECCC
T ss_pred HhhhccCCceEEEEecHHHhh---cchHHHHHHhccc--ccCCcEEEEEEecCc-ccchhhcchhhhccCC-ceEEEeCC
Confidence 75 34568999999999998 2333333333221 234578899999876 2 23443333443 25788999
Q ss_pred CCccchhhhHHHHHHH
Q 000974 833 PSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 833 P~~~eR~~i~~~~l~~ 848 (1205)
++.++...|++.-+..
T Consensus 198 Yt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 198 VDKNELQQMIITRLKS 213 (318)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998875
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=3.9e-10 Score=128.72 Aligned_cols=128 Identities=23% Similarity=0.283 Sum_probs=90.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
..+||+||||||||++|+++++.+ +.+++.++++.+. ....+..+|..+ ...+++||||||+.+......
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~-~~~~~~~~~~~~~-------~~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~- 108 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAIE-------KPGDLAAILANS-LEEGDILFIDEIHRLSRQAEE- 108 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH-TCCEEEECTTTCC-------SHHHHHHHHTTT-CCTTCEEEETTTTSCCHHHHH-
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeccccC-------ChHHHHHHHHHh-ccCCCEEEEECCcccccchHH-
Confidence 469999999999999999999998 6777776654432 123444455442 135789999999998754443
Q ss_pred HHHHHHHHHHhcC----------------CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 784 LRAVLLTLLEELP----------------SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 784 ~~~~ll~lL~~~~----------------~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.|+.+|+... ...++++|+|||.+ ..+++.+..+| ..++.|++|+.+++..|++.++.
T Consensus 109 ---~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-~~~~~~l~~R~--~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 109 ---HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-GLITAPLLSRF--GIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp ---HHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC-SSCSCSTTTTC--SCEEECCCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc-ccCCHHHHhcc--cEEEecCCCCHHHHHHHHHHHHH
Confidence 4555665531 01357899999987 67777444444 36889999999998888887764
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.98 E-value=1.1e-10 Score=135.96 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=85.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc-CccccCCCccccCCC--------------------------------------
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLSDP-------------------------------------- 744 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~-~~~~~l~~~~l~~~~-------------------------------------- 744 (1205)
.++||+||||||||++|+++++.+.. .+++.+....++..+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~ 150 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSR 150 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcc
Confidence 47999999999999999999998742 366555544433221
Q ss_pred ----------CCCChhhHHHHhhccccc---------cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEec
Q 000974 745 ----------SAKTPEEALVHIFGEARR---------TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLG 805 (1205)
Q Consensus 745 ----------~~g~se~~~~~lf~~A~~---------~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIa 805 (1205)
..|.....++.+|..+.. ..|+||||||||.+... ..+.|+.+++... .++++|+
T Consensus 151 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~----~~~~L~~~le~~~--~~~~ii~ 224 (368)
T 3uk6_A 151 TQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIE----SFSFLNRALESDM--APVLIMA 224 (368)
T ss_dssp ---CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHH----HHHHHHHHTTCTT--CCEEEEE
T ss_pred cccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChH----HHHHHHHHhhCcC--CCeeeee
Confidence 012333445555544332 22789999999998643 3445555554432 2455555
Q ss_pred cCC----------cCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 806 SSS----------VPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 806 ttn----------~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
|.+ .++..|++.+..+|. ++.|++|+.+++..|++..+..
T Consensus 225 t~~~~~~i~~t~~~~~~~l~~~l~sR~~---~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 225 TNRGITRIRGTSYQSPHGIPIDLLDRLL---IVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESCSEEECBTSSCEEETTCCHHHHTTEE---EEEECCCCHHHHHHHHHHHHHH
T ss_pred cccceeeeeccCCCCcccCCHHHHhhcc---EEEecCCCHHHHHHHHHHHHHH
Confidence 441 222556663333443 4789999999999999987753
No 169
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.98 E-value=1.4e-10 Score=131.67 Aligned_cols=138 Identities=11% Similarity=0.124 Sum_probs=89.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCC-----------CCCChhhHHHHhhccccccCCceeee
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDP-----------SAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~-----------~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
..+||+||||||||++|++|++.+. +.+++.++++.+.... +.|... ...+........++||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~l 125 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILF 125 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEE
Confidence 4699999999999999999999863 3457766665543211 011111 011222223344589999
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHhcC---------CCCCeEEeccCCcC-------------------------CccccC
Q 000974 771 PQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVP-------------------------LAEVEG 816 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~lL~~~~---------~~~~v~vIattn~~-------------------------~~~Ld~ 816 (1205)
||||.+... +.+.|+.+|+.-. ...+++||+|||.. ...+++
T Consensus 126 DEi~~l~~~----~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (311)
T 4fcw_A 126 DAIEKAHPD----VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRP 201 (311)
T ss_dssp ETGGGSCHH----HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCH
T ss_pred eChhhcCHH----HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCH
Confidence 999998653 4455777776532 12477899999972 123333
Q ss_pred CCccccCCCceeeecCCCccchhhhHHHHHHHH
Q 000974 817 DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 817 ~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.+..+|. .++.|.+|+.+++..|++.++...
T Consensus 202 ~l~~R~~--~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 202 EFLNRLD--EIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp HHHTTCS--EEEECCCCCHHHHHHHHHHHTHHH
T ss_pred HHHhcCC--eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2223332 677899999999999999988764
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.97 E-value=2.5e-10 Score=130.64 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=90.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccc-----cCCceeeeccchhhH-H
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR-----TTPSILYIPQFNLWW-E 778 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~-----~~p~ILfiDEid~l~-~ 778 (1205)
.+||+||||||||++|+++++.+ +.+++.++.+.. + ...++.++..+.. ..++||||||+|.+. .
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~~~~~------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~ 120 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV-NADMMFVNGSDC------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA 120 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT-TEEEEEEETTTC------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEccccc------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH
Confidence 47888999999999999999998 777887774331 1 3344443332211 257899999999987 4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHHH
Q 000974 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEAA 849 (1205)
Q Consensus 779 ~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~~ 849 (1205)
.. .+.|+.+|+.... .+.||+|||.+ ..+++.+..++ .++.|++|+.++|..|++.++...
T Consensus 121 ~~----~~~L~~~le~~~~--~~~iI~~~n~~-~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 121 ES----QRHLRSFMEAYSS--NCSIIITANNI-DGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp HH----HHHHHHHHHHHGG--GCEEEEEESSG-GGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhCCC--CcEEEEEeCCc-cccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 33 4456666766543 56777789987 67777455544 478999999999999988877653
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=6.1e-10 Score=126.45 Aligned_cols=147 Identities=9% Similarity=0.099 Sum_probs=103.1
Q ss_pred ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcC-CeEEEEEecchhhHHHHHHH
Q 000974 383 GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAG-QKVSFYMRKGADVLSKWVGE 461 (1205)
Q Consensus 383 Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-~~~~~~~i~~~~l~~~~~g~ 461 (1205)
|++++++.|+.++.. + . ..++|||||||+|||++|+++|+.++... ....++.+++..- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 667788888887654 1 2 45899999999999999999998753110 1123455554320 01
Q ss_pred HHHHHHHHHHHHhhc----CCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccc
Q 000974 462 AERQLKLLFEEAQRN----QPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGAL 537 (1205)
Q Consensus 462 ~e~~l~~lf~~a~~~----~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL 537 (1205)
.-..++.+++.+... ...|+||||+|.|. ....+.|+..|+. ...++++|.+|+.+..|.+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHH
Confidence 223456666666432 24699999999984 3346678898984 345677888888889999999
Q ss_pred cCCCCccccccCCCCCchhhhhhhhccc
Q 000974 538 RRPGRFDREFNFPLPGCEARAEILDIHT 565 (1205)
Q Consensus 538 ~r~gRf~~~I~~~~P~~eer~~Il~~~l 565 (1205)
++ | .+.|++|+.++..+++...+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99 7 89999999999999988766
No 172
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.95 E-value=1.9e-10 Score=134.60 Aligned_cols=89 Identities=18% Similarity=0.351 Sum_probs=62.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCcccc-CCCCCCCh-hhHHHHhhcccc----ccCCceeeeccchhhH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALL-SDPSAKTP-EEALVHIFGEAR----RTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~-~~~~~g~s-e~~~~~lf~~A~----~~~p~ILfiDEid~l~ 777 (1205)
.++||+||||||||++|++||+.+ +.+|+.+++..+. .+| .|.. +..+..+|..+. ...++|||||||+.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL-DIPIAISDATSLTEAGY-VGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh-CCCEEEecchhhhhcCc-CCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 469999999999999999999998 7899988887765 344 3443 455666665443 3467999999999987
Q ss_pred HhHH----------HHHHHHHHHHHHh
Q 000974 778 ENAH----------EQLRAVLLTLLEE 794 (1205)
Q Consensus 778 ~~~~----------~~~~~~ll~lL~~ 794 (1205)
.... ..+.+.|+.+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp -------------CHHHHHHHHHHHHC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhc
Confidence 5411 1267778888885
No 173
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.93 E-value=2e-10 Score=115.52 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=68.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
..+||+|+||||||++|++|++.+. +|+.+++..+...+ ...+|..|. +++||||||+.+....+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~~~~~~--------~~~~~~~a~---~~~l~lDei~~l~~~~q~~ 94 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVEYLIDM--------PMELLQKAE---GGVLYVGDIAQYSRNIQTG 94 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTTHHHHC--------HHHHHHHTT---TSEEEEEECTTCCHHHHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC--CeEEechhhCChHh--------hhhHHHhCC---CCeEEEeChHHCCHHHHHH
Confidence 3599999999999999999999873 88888876654322 455666554 5799999999997655544
Q ss_pred HHHHHHHHHHhcCCCCCeEEeccCCcCCccc
Q 000974 784 LRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 784 ~~~~ll~lL~~~~~~~~v~vIattn~~~~~L 814 (1205)
|+.+|+... ..++.||+|||.++..+
T Consensus 95 ----Ll~~l~~~~-~~~~~iI~~tn~~~~~~ 120 (143)
T 3co5_A 95 ----ITFIIGKAE-RCRVRVIASCSYAAGSD 120 (143)
T ss_dssp ----HHHHHHHHT-TTTCEEEEEEEECTTTC
T ss_pred ----HHHHHHhCC-CCCEEEEEecCCCHHHH
Confidence 455555543 34678889999875555
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.92 E-value=3.3e-11 Score=125.24 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=81.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhc---------ccCccccCCCccccCC-CCCCChhhHHHHhhcccccc-CCceeeecc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPALLSD-PSAKTPEEALVHIFGEARRT-TPSILYIPQ 772 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l---------~~~~~~~l~~~~l~~~-~~~g~se~~~~~lf~~A~~~-~p~ILfiDE 772 (1205)
.++||+||||||||++|+++++.+ .+.+++.+++..++.. .+.|..+..+..++..+... .|+||||||
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe 123 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDE 123 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 468999999999999999999986 2456666665555421 12344555677777766554 678999999
Q ss_pred chhhHH-----hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC----ccccCCCccccCCCceeeecCCC
Q 000974 773 FNLWWE-----NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL----AEVEGDPSTVFPLRSVYQVEKPS 834 (1205)
Q Consensus 773 id~l~~-----~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~----~~Ld~~~~~~f~~r~ii~~~~P~ 834 (1205)
++.+.. .....+.+.|..+++ ...++||++||.+. ..+++.+..+|. .++|++|+
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~---~i~i~~p~ 187 (187)
T 2p65_A 124 IHTVVGAGAVAEGALDAGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKALERRFQ---QILVEQPS 187 (187)
T ss_dssp GGGGSSSSSSCTTSCCTHHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHHHHHHEE---EEECCSCC
T ss_pred HHHhcccccccccchHHHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHHHHHhcC---cccCCCCC
Confidence 999862 212334445555554 34677888888762 135553444443 47788775
No 175
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.91 E-value=2.5e-10 Score=137.47 Aligned_cols=126 Identities=19% Similarity=0.286 Sum_probs=84.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhc---------ccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccch
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHEL---------EKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l---------~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
.++||+||||||||++|++||+.+ .+.+|+.++++ .. +.|+.+..+..+|..+....|+|||||
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~-~~g~~e~~~~~~~~~~~~~~~~iLfiD--- 274 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TK-YRGEFEDRLKKVMDEIRQAGNIILFID--- 274 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------CTTHHHHHHHHHTCCCCEEEEC---
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---cc-ccchHHHHHHHHHHHHHhcCCeEEEEe---
Confidence 468999999999999999999986 35667777766 33 378888899999999998889999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC----ccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 775 LWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL----AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~----~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
+ .....+.|+.. +. ...+.||++||.+. ..+++.+..+|. ++.|+.|+.+++..||+.++..
T Consensus 275 ----~-~~~a~~~L~~~---L~-~g~v~vI~at~~~e~~~~~~~~~al~~Rf~---~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 275 ----A-AIDASNILKPS---LA-RGELQCIGATTLDEYRKYIEKDAALERRFQ---PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ----C---------CCC---TT-SSSCEEEEECCTTTTHHHHTTCSHHHHSEE---EEECCCCCHHHHHHHHHHTTTT
T ss_pred ----C-chhHHHHHHHh---hc-CCCEEEEecCCHHHHHHHhhcCHHHHHhCc---cceeCCCCHHHHHHHHHHHHHH
Confidence 1 11222223222 23 45788899999772 146663333443 6889999999999999977643
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.90 E-value=1.1e-10 Score=139.58 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=85.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHH-
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE- 778 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~- 778 (1205)
..+||+||||||||+||++|++.+. +.+++.++...+...+ .+.........|.......++||||||++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4699999999999999999999762 4556666554443211 000000001122222223689999999999885
Q ss_pred -hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcc---ccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 779 -NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 779 -~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~---Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
..+..++..|..+. .....+||+ |+.++.. +++.+..+|....++.|++|+.++|..|++..+..
T Consensus 210 ~~~q~~l~~~l~~l~----~~~~~iIit-t~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 TGVQTELFHTFNELH----DSGKQIVIC-SDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp HHHHHHHHHHHHHHH----TTTCEEEEE-ESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HCCCeEEEE-ECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 34444444443333 233445554 5544355 44444444543468899999999999999988764
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=7.5e-10 Score=135.05 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=89.9
Q ss_pred cceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCC------hhhHHHHhhccc-----cccCCceeeec
Q 000974 703 RPRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT------PEEALVHIFGEA-----RRTTPSILYIP 771 (1205)
Q Consensus 703 ~~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~------se~~~~~lf~~A-----~~~~p~ILfiD 771 (1205)
.+.+||+||||||||++|+++|+++ +.+++.++.+.+...+.... ....+..+|..+ ....++|||||
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l-~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 3579999999999999999999998 88899888776543210000 000123344444 23568999999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 772 QFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
|+|.+..... ..++.|+.+++.. ..+|++|+++... ..|++ +.+...++.|++|+.+++..++..++..
T Consensus 156 Eid~l~~~~~-~~l~~L~~~l~~~--~~~iIli~~~~~~-~~l~~----l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 156 EVDGMSGGDR-GGVGQLAQFCRKT--STPLILICNERNL-PKMRP----FDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp SGGGCCTTST-THHHHHHHHHHHC--SSCEEEEESCTTS-STTGG----GTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCccchhhH-HHHHHHHHHHHhc--CCCEEEEEcCCCC-ccchh----hHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999875432 2345566666653 3356666554432 33432 2332367889999999999999877754
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.89 E-value=3e-10 Score=135.64 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=84.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccc----cCCceeeeccchhhHHh
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARR----TTPSILYIPQFNLWWEN 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~----~~p~ILfiDEid~l~~~ 779 (1205)
+.+||+||||||||++|++|++.+ +.+|+.++.. +.....++.+|..+.. ..++||||||||.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~-~~~f~~l~a~--------~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA-NADVERISAV--------TSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEETT--------TCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh-CCCeEEEEec--------cCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH
Confidence 469999999999999999999998 6777766521 2234456667666553 35789999999998654
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.++ .|+..|+. ...++|.+||..+...+++.+.+++ .++.|.+|+.+++..|++..+..
T Consensus 122 ~q~----~LL~~le~---~~v~lI~att~n~~~~l~~aL~sR~---~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 122 QQD----AFLPHIED---GTITFIGATTENPSFELNSALLSRA---RVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp -------CCHHHHHT---TSCEEEEEESSCGGGSSCHHHHTTE---EEEECCCCCHHHHHHHHHHHHHC
T ss_pred HHH----HHHHHHhc---CceEEEecCCCCcccccCHHHhCce---eEEeeCCcCHHHHHHHHHHHHHH
Confidence 333 35555554 3444555555554345655222222 47789999999999999888863
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.89 E-value=1.4e-10 Score=132.75 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=85.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHH--h
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWE--N 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~--~ 779 (1205)
.++||+||||||||++|+++++.+. +.+++.++...+...+ .+.........|..+. ..++|||||||+.+.. .
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~ 115 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM-VEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER 115 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH-HHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH
Confidence 4699999999999999999999863 4667777655543221 1111111111222222 2378999999999875 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCcc---ccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 780 AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAE---VEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 780 ~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~---Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.+..++.. ++.+.....++||++++.+ .. +++.+..+|....+++|++ +.+++..|++.++..
T Consensus 116 ~~~~l~~~----l~~~~~~~~~iii~~~~~~-~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 116 TQIEFFHI----FNTLYLLEKQIILASDRHP-QKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp HHHHHHHH----HHHHHHTTCEEEEEESSCG-GGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHCCCeEEEEecCCh-HHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 44444443 3333223345666666654 53 4444444554336788999 999999999988853
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.88 E-value=2.9e-10 Score=114.68 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=65.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHH
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~ 782 (1205)
.+||+|+||||||++|++|++.+. +.+|+ ++++.+... .....+|..| ..++|||||||.+....+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------~~~~~~~~~a---~~g~l~ldei~~l~~~~q~ 94 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------PQLNDFIALA---QGGTLVLSHPEHLTREQQY 94 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-------SCHHHHHHHH---TTSCEEEECGGGSCHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-------hhhhcHHHHc---CCcEEEEcChHHCCHHHHH
Confidence 599999999999999999998752 46788 877665432 2344555555 3479999999999876555
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeccCCcCCccc
Q 000974 783 QLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 783 ~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L 814 (1205)
. |+.+|... ...+.||+|||.++..+
T Consensus 95 ~----Ll~~l~~~--~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 95 H----LVQLQSQE--HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp H----HHHHHHSS--SCSSCEEEEESSCHHHH
T ss_pred H----HHHHHhhc--CCCEEEEEECCcCHHHH
Confidence 4 44445333 33567888999875444
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.87 E-value=8.1e-10 Score=128.74 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=88.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--------cCccccCCCccccCC---------------CCCCC-hhhHHHHhhcc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALLSD---------------PSAKT-PEEALVHIFGE 759 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--------~~~~~~l~~~~l~~~---------------~~~g~-se~~~~~lf~~ 759 (1205)
..++|+||||||||++|+++++.+. +.+++.+++....+. ...|. ....+..++..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 4699999999999999999998762 456666665432110 01222 22334445544
Q ss_pred ccc-cCCceeeeccchhhHHhH-HHHHHHHHHHHHHhcCC---CCCeEEeccCCcCC--ccccCCCccccCCCceeeecC
Q 000974 760 ARR-TTPSILYIPQFNLWWENA-HEQLRAVLLTLLEELPS---HLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEK 832 (1205)
Q Consensus 760 A~~-~~p~ILfiDEid~l~~~~-~~~~~~~ll~lL~~~~~---~~~v~vIattn~~~--~~Ld~~~~~~f~~r~ii~~~~ 832 (1205)
+.. ..|+||||||++.+.... .. ..|..++..+.. ..++.||++||.+. ..+++.+..+|. ..+++|++
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~~~~---~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~ 200 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRPGGQ---DLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPP 200 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHSTTHH---HHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCC
T ss_pred HhccCCeEEEEEccHhhhcccCCCC---hHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCC
Confidence 433 348899999999987541 22 234445554432 45778888888762 234332223332 14788999
Q ss_pred CCccchhhhHHHHHHH
Q 000974 833 PSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 833 P~~~eR~~i~~~~l~~ 848 (1205)
|+.+++..||+..+..
T Consensus 201 l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 201 YTAPQLRDILETRAEE 216 (387)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988864
No 182
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.81 E-value=3.6e-09 Score=112.67 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=82.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhcc--ccccCCceeeeccchhhHH
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGE--ARRTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~--A~~~~p~ILfiDEid~l~~ 778 (1205)
++||+||||||||++|+++++.+. ...++.++...... .......+...... .....++||||||++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC---HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC---hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence 599999999999999999998752 22344443222110 00011112222221 1125678999999999875
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 779 ~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
.. .+.|+.+++... .++.+|+|||.+ ..+++.+..++ .+++|++|+.++...+++.++..
T Consensus 117 ~~----~~~l~~~l~~~~--~~~~~i~~~~~~-~~~~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 117 DA----QAALRRTMEMYS--KSCRFILSCNYV-SRIIEPIQSRC---AVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp HH----HHHHHHHHHHTT--TTEEEEEEESCG-GGSCHHHHTTS---EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhcC--CCCeEEEEeCCh-hhcCHHHHHhC---ceeecCCCCHHHHHHHHHHHHHH
Confidence 43 345666676644 356677788876 55555222222 37889999999999999887754
No 183
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.80 E-value=1.3e-09 Score=123.87 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=83.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccC--------CC----CCCChhhHHHHhhccccccCCceee
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DP----SAKTPEEALVHIFGEARRTTPSILY 769 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~--------~~----~~g~se~~~~~lf~~A~~~~p~ILf 769 (1205)
..+||+|+||||||++|++|++.+. +.+|+.++++.+.. ++ +.|... .....|..| ..++||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~ 101 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA---DGGTLF 101 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH---TTSEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc---CCCEEE
Confidence 3599999999999999999999753 46788887665421 11 111111 111233333 357999
Q ss_pred eccchhhHHhHHHHHHHHHHHHHHhcC---------CCCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCc
Q 000974 770 IPQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPST 835 (1205)
Q Consensus 770 iDEid~l~~~~~~~~~~~ll~lL~~~~---------~~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~ 835 (1205)
||||+.+....+. .|+.+|+... ...++.||+|||.++..+-. ...|+. | .++.|.+|..
T Consensus 102 LDEi~~l~~~~q~----~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~--~g~fr~~L~~Rl~~~~i~lPpL 175 (304)
T 1ojl_A 102 LDEIGDISPLMQV----RLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS--AGRFRQDLYYRLNVVAIEMPSL 175 (304)
T ss_dssp EESCTTCCHHHHH----HHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH--HTSSCHHHHHHHSSEEEECCCS
T ss_pred EeccccCCHHHHH----HHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH--hCCcHHHHHhhcCeeEEeccCH
Confidence 9999998765444 4556666532 12357889999976333221 222321 2 3777889999
Q ss_pred cchhhhHHHHHHH
Q 000974 836 EDRSLFLGRLIEA 848 (1205)
Q Consensus 836 ~eR~~i~~~~l~~ 848 (1205)
.+|...+..++..
T Consensus 176 ~eR~edi~~l~~~ 188 (304)
T 1ojl_A 176 RQRREDIPLLADH 188 (304)
T ss_dssp GGGGGGHHHHHHH
T ss_pred HHhHhhHHHHHHH
Confidence 9888755555543
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.77 E-value=1.3e-09 Score=118.10 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=81.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
..+||+||||||||++|+++++.+. +.+++.++...+.... ..++... ..++||||||++.+.....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~vliiDe~~~~~~~~~ 121 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS---------TALLEGL--EQFDLICIDDVDAVAGHPL 121 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC---------GGGGTTG--GGSSEEEEETGGGGTTCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH---------HHHHHhc--cCCCEEEEeccccccCCHH
Confidence 4699999999999999999999863 2455556555544321 1222222 3478999999999875431
Q ss_pred HHHHHHHHHHHHhcCCCCCe-EEeccCCcCCccccC---CCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 782 EQLRAVLLTLLEELPSHLPI-LLLGSSSVPLAEVEG---DPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v-~vIattn~~~~~Ld~---~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
....|..+++.......+ +|++ |+..+..+.. .+..+|....+++|++|+.+++..|++.++..
T Consensus 122 --~~~~l~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 122 --WEEAIFDLYNRVAEQKRGSLIVS-ASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp --HHHHHHHHHHHHHHHCSCEEEEE-ESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCCeEEEE-cCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 123344444444322333 4444 4433343332 22223322268899999999999999988863
No 185
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.74 E-value=2.2e-09 Score=119.12 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=80.5
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCC--------C----CCCChhhHHHHhhccccccCCceee
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD--------P----SAKTPEEALVHIFGEARRTTPSILY 769 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~--------~----~~g~se~~~~~lf~~A~~~~p~ILf 769 (1205)
..+||+|+||||||++|++|++.+. +.+|+.++++.+... . +.|... ....+|.. ..+++||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~-~~~~~l~~---a~~~~l~ 105 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQK-RHPGRFER---ADGGTLF 105 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHH---TTTSEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccc-cccchhhh---cCCcEEE
Confidence 3599999999999999999999864 357888876654210 0 011100 00112222 2357999
Q ss_pred eccchhhHHhHHHHHHHHHHHHHHhcC---------CCCCeEEeccCCcCCccccC---CCccccCCC-ceeeecCCCcc
Q 000974 770 IPQFNLWWENAHEQLRAVLLTLLEELP---------SHLPILLLGSSSVPLAEVEG---DPSTVFPLR-SVYQVEKPSTE 836 (1205)
Q Consensus 770 iDEid~l~~~~~~~~~~~ll~lL~~~~---------~~~~v~vIattn~~~~~Ld~---~~~~~f~~r-~ii~~~~P~~~ 836 (1205)
||||+.+....+. .|+.+|+.-. ...++.||+|||.++..+-. ....++. | .++.|.+|...
T Consensus 106 lDEi~~l~~~~q~----~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~-Rl~~~~i~lp~L~ 180 (265)
T 2bjv_A 106 LDELATAPMMVQE----KLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD-ALAFDVVQLPPLR 180 (265)
T ss_dssp EESGGGSCHHHHH----HHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH-HHCSEEEECCCGG
T ss_pred EechHhcCHHHHH----HHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH-hhcCcEEeCCChh
Confidence 9999998765444 4556666421 12367888999975333210 0111221 2 24678899998
Q ss_pred chhhhHHHHHHH
Q 000974 837 DRSLFLGRLIEA 848 (1205)
Q Consensus 837 eR~~i~~~~l~~ 848 (1205)
+|...+..++..
T Consensus 181 ~R~~di~~l~~~ 192 (265)
T 2bjv_A 181 ERESDIMLMAEY 192 (265)
T ss_dssp GCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 887655554443
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=2.1e-08 Score=104.45 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=60.3
Q ss_pred cccccccCC----hhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhh-hcCCeEEEEEe
Q 000974 375 SVSFDDIGG----LSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYMR 449 (1205)
Q Consensus 375 ~~~~~~i~G----l~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~i 449 (1205)
..+|+++++ +..++..+++++.. +.+....+++|+||+|||||+|+++++..+. ..+..+. .+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~--~~ 73 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY--FF 73 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC--EE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE--EE
Confidence 457788765 34444444444332 3334567899999999999999999999985 4443333 34
Q ss_pred cchhhHHHHHHHHHHH-HHHHHHHHhhcCCceEEEeccCCc
Q 000974 450 KGADVLSKWVGEAERQ-LKLLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 450 ~~~~l~~~~~g~~e~~-l~~lf~~a~~~~p~VL~IDEid~L 489 (1205)
+..+++..+....... ...++... ..+.||||||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 5555554433221110 11122222 35679999999854
No 187
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.71 E-value=1.1e-08 Score=117.81 Aligned_cols=138 Identities=21% Similarity=0.249 Sum_probs=80.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc------CccccCCCc-cccC----------------CCCCCChhhHH------H
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEK------FPVHSLGLP-ALLS----------------DPSAKTPEEAL------V 754 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~------~~~~~l~~~-~l~~----------------~~~~g~se~~~------~ 754 (1205)
.++||+||||||||++|+++++.+.. .+|...... .+.. ....+.++..+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 35999999999999999999998742 222111000 0000 00012222211 1
Q ss_pred Hhhccc---------cccCCceeeeccchhhHHhHHHHHHHHHHHHHHh----cCC-------CCCeEEeccCCcCCccc
Q 000974 755 HIFGEA---------RRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEE----LPS-------HLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 755 ~lf~~A---------~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~----~~~-------~~~v~vIattn~~~~~L 814 (1205)
..|..+ ....++|||||||+.+...... .|+.+|+. +.. ..+++||+|||.....|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~----~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l 201 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVD----LLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDL 201 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHH----HHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCC
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHH----HHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCC
Confidence 111111 1123689999999998765443 45566654 211 13789999999643467
Q ss_pred cCCCccccCCCceeeecCC-CccchhhhHHHHHH
Q 000974 815 EGDPSTVFPLRSVYQVEKP-STEDRSLFLGRLIE 847 (1205)
Q Consensus 815 d~~~~~~f~~r~ii~~~~P-~~~eR~~i~~~~l~ 847 (1205)
++.+..+| ..+++|++| +.+++..|++..+.
T Consensus 202 ~~~L~~R~--~~~~~l~~~~~~~~~~~il~~~~~ 233 (350)
T 1g8p_A 202 RPQLLDRF--GLSVEVLSPRDVETRVEVIRRRDT 233 (350)
T ss_dssp CHHHHTTC--SEEEECCCCCSHHHHHHHHHHHHH
T ss_pred CHHHHhhc--ceEEEcCCCCcHHHHHHHHHHHHh
Confidence 76333334 356889888 56677789887653
No 188
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.70 E-value=1.3e-09 Score=125.21 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=82.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCcc------ccCCCCCCChhhHHHHhhcccc-ccCCceeeeccchhh
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPA------LLSDPSAKTPEEALVHIFGEAR-RTTPSILYIPQFNLW 776 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~------l~~~~~~g~se~~~~~lf~~A~-~~~p~ILfiDEid~l 776 (1205)
.++||+||||||||++|+++++.+ +.+++.+.... ++.....+. ....|.... ....+|||||||+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~-~~~~~~i~~~~~~~~~~l~g~~~~~~----~~~~~~~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM-DLDFHRIQFTPDLLPSDLIGTMIYNQ----HKGNFEVKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCCHHHHHEEEEEET----TTTEEEEEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh-CCCeEEEecCCCCChhhcCCceeecC----CCCceEeccCcccccEEEEEccccC
Confidence 369999999999999999999988 66776655321 111000000 000011000 011379999999997
Q ss_pred HHhHHHHHHHHHHHHHHhc---------CCCCCeEEeccCCcCCc-----cccCCCccccCCCceeeecCCCccchhhhH
Q 000974 777 WENAHEQLRAVLLTLLEEL---------PSHLPILLLGSSSVPLA-----EVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~---------~~~~~v~vIattn~~~~-----~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
.... .+.|+..|++- ....+++||+|+|.. . .|++.+..+| ..++.|+.|+.+++.+|+
T Consensus 122 ~~~~----~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~-~~~~~~~l~~~l~~Rf--~~~i~i~~p~~~~~~~il 194 (331)
T 2r44_A 122 PAKV----QSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV-EQEGTYPLPEAQVDRF--MMKIHLTYLDKESELEVM 194 (331)
T ss_dssp CHHH----HHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT-CCSCCCCCCHHHHTTS--SEEEECCCCCHHHHHHHH
T ss_pred CHHH----HHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC-cccCcccCCHHHHhhe--eEEEEcCCCCHHHHHHHH
Confidence 6543 44566666642 123467888888843 2 1555333333 356889999999999999
Q ss_pred HHHHH
Q 000974 843 GRLIE 847 (1205)
Q Consensus 843 ~~~l~ 847 (1205)
+..+.
T Consensus 195 ~~~~~ 199 (331)
T 2r44_A 195 RRVSN 199 (331)
T ss_dssp HHHHC
T ss_pred Hhccc
Confidence 87763
No 189
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.68 E-value=3.5e-09 Score=123.57 Aligned_cols=136 Identities=17% Similarity=0.145 Sum_probs=86.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc----------cCccccCCCcccc-C-------------CC---CCCCh-hhHHHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE----------KFPVHSLGLPALL-S-------------DP---SAKTP-EEALVH 755 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~----------~~~~~~l~~~~l~-~-------------~~---~~g~s-e~~~~~ 755 (1205)
..+||+||||||||++|+++++.+. +.+++.+++.... + +. ..|.+ ...+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 125 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDK 125 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 4699999999999999999998751 4556666543321 0 00 01222 233555
Q ss_pred hhccccccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC--ccccCCCccccCCCceeeecCC
Q 000974 756 IFGEARRTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEKP 833 (1205)
Q Consensus 756 lf~~A~~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~--~~Ld~~~~~~f~~r~ii~~~~P 833 (1205)
++..+....+ ||||||+|.+.......+ .+..++... .++.||+|||.+. ..+++.+..+|. .+++|++|
T Consensus 126 l~~~l~~~~~-vlilDEi~~l~~~~~~~~--~l~~l~~~~---~~~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~l~~l 197 (384)
T 2qby_B 126 IKNGTRNIRA-IIYLDEVDTLVKRRGGDI--VLYQLLRSD---ANISVIMISNDINVRDYMEPRVLSSLG--PSVIFKPY 197 (384)
T ss_dssp HHHHHSSSCE-EEEEETTHHHHHSTTSHH--HHHHHHTSS---SCEEEEEECSSTTTTTTSCHHHHHTCC--CEEEECCC
T ss_pred HHHHhccCCC-EEEEECHHHhccCCCCce--eHHHHhcCC---cceEEEEEECCCchHhhhCHHHHhcCC--CeEEECCC
Confidence 5555544444 999999999875321121 022333333 6788888888762 334442233333 48899999
Q ss_pred CccchhhhHHHHHH
Q 000974 834 STEDRSLFLGRLIE 847 (1205)
Q Consensus 834 ~~~eR~~i~~~~l~ 847 (1205)
+.++...||+..+.
T Consensus 198 ~~~~~~~il~~~~~ 211 (384)
T 2qby_B 198 DAEQLKFILSKYAE 211 (384)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 190
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.68 E-value=7.8e-09 Score=124.68 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=71.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc-Ccc--ccC---CCccccCCCCCCChhhHHHHhhcccccc---CCceeeeccch
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPV--HSL---GLPALLSDPSAKTPEEALVHIFGEARRT---TPSILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~-~~~--~~l---~~~~l~~~~~~g~se~~~~~lf~~A~~~---~p~ILfiDEid 774 (1205)
.++||+||||||||++|++|++.+.. .+| +.+ ...++++.+ .+..... ...|..+... .++|||||||+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~-~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL-SIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB-C-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc-cHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 46999999999999999999998732 122 222 123344322 2221111 2234333332 57899999998
Q ss_pred hhHHhHHHHHHHHHHHHHHhc----C----CCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCc-cchhhhHHH
Q 000974 775 LWWENAHEQLRAVLLTLLEEL----P----SHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPST-EDRSLFLGR 844 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~----~----~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~-~eR~~i~~~ 844 (1205)
.+.. .+.+.|+..|++- . .....++|+|||.++......-+.+.++-..+++++|+. +++..|++.
T Consensus 120 r~~~----~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 120 KAGP----AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp GCCH----HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTC
T ss_pred hhcH----HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhc
Confidence 8654 4445577777631 1 111224566777543311100022222225567888887 566766653
No 191
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.65 E-value=1.6e-08 Score=108.82 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=83.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC----------------CccccC-CCCCCChhhHHHHhhcccc----cc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG----------------LPALLS-DPSAKTPEEALVHIFGEAR----RT 763 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~----------------~~~l~~-~~~~g~se~~~~~lf~~A~----~~ 763 (1205)
.+||+||+|||||++|+++++.+.. ...... ...++. ..........+..++..+. ..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC-ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 125 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC-TTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC-CCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcC
Confidence 5899999999999999999987622 111100 001111 0001122334556665543 33
Q ss_pred CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHH
Q 000974 764 TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
.+.||||||++.+... ..+.|+.+|+... ..+.+|++||.+ ..+++ ..+.+ -.+++|++++.++...+++
T Consensus 126 ~~~vlviDe~~~l~~~----~~~~l~~~l~~~~--~~~~~i~~t~~~-~~~~~--~l~~r-~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH----SFNALLKTLEEPP--EHVKFLLATTDP-QKLPV--TILSR-CLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp SSEEEEEETGGGSCHH----HHHHHHHHHHSCC--TTEEEEEEESCG-GGSCH--HHHTT-SEEEECCCCCHHHHHHHHH
T ss_pred CceEEEEECcccccHH----HHHHHHHHHhcCC--CceEEEEEeCCh-HhCCH--HHHHH-hhhccCCCCCHHHHHHHHH
Confidence 5789999999997543 3445666666543 367777778776 45554 22222 2578899999999999998
Q ss_pred HHHHH
Q 000974 844 RLIEA 848 (1205)
Q Consensus 844 ~~l~~ 848 (1205)
.++..
T Consensus 196 ~~~~~ 200 (250)
T 1njg_A 196 HILNE 200 (250)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87753
No 192
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.65 E-value=2.1e-07 Score=106.62 Aligned_cols=193 Identities=17% Similarity=0.086 Sum_probs=112.3
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch-
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA- 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~- 452 (1205)
+......++|.+..++.|.+++.. + ..++|+||+|+|||+|++.+++.++ +.++.....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~ 66 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELY 66 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeeccc
Confidence 444556789999999999887642 1 5799999999999999999998762 223322211
Q ss_pred ---------hhHHHHHH----------------------------HHHHHHHHHHHHHhhcCCceEEEeccCCcccccch
Q 000974 453 ---------DVLSKWVG----------------------------EAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 495 (1205)
Q Consensus 453 ---------~l~~~~~g----------------------------~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~ 495 (1205)
.++..+.. .....+..+...+....|.||||||+|.+......
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~ 146 (350)
T 2qen_A 67 AERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR 146 (350)
T ss_dssp HTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc
Confidence 11111100 01111222222222224889999999988531000
Q ss_pred hhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccccccc---------ccccCCCCccccccCCCCCchhhhhhhhcccc
Q 000974 496 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID---------GALRRPGRFDREFNFPLPGCEARAEILDIHTR 566 (1205)
Q Consensus 496 ~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld---------~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~ 566 (1205)
....++..|...++.. .++.+|.++.....+. ..+. +|+...+.+++.+.++..+++...+.
T Consensus 147 ----~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 147 ----GGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp ----TTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred ----chhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHH
Confidence 0122333343444422 2455555544321111 1222 35666889999999999999987766
Q ss_pred ccCCCCchhHHHHHhhhhhcccchhHHHHh
Q 000974 567 KWKQPPSRELKSELAASCVGYCGADLKALC 596 (1205)
Q Consensus 567 ~~~~~~~~~~l~~LA~~t~G~sgadI~~L~ 596 (1205)
..+...+.+.+..+...+.|+. .-+..++
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 5555667777788888888854 3344443
No 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.65 E-value=7.1e-09 Score=120.56 Aligned_cols=143 Identities=12% Similarity=0.147 Sum_probs=89.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc-----cCccccCCCccc----------cCCC-----CCCC-hhhHHHHhhccccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE-----KFPVHSLGLPAL----------LSDP-----SAKT-PEEALVHIFGEARR 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~-----~~~~~~l~~~~l----------~~~~-----~~g~-se~~~~~lf~~A~~ 762 (1205)
..++|+||+|||||++++++++.+. +.+++.+++... +... ..|. ....+..++..+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 125 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD 125 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 4699999999999999999998763 345555553321 1000 0122 22334445544443
Q ss_pred c-CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC--ccccCCCccccCCCceeeecCCCccchh
Q 000974 763 T-TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 763 ~-~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~--~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
. .|+||||||++.+.......++..|+.+++.+ ...++.||++|+.+. ..+++.+..+|.. .+++|++++.++..
T Consensus 126 ~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~-~~i~l~~l~~~~~~ 203 (386)
T 2qby_A 126 YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKSSLSE-EEIIFPPYNAEELE 203 (386)
T ss_dssp CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHHTTTT-EEEEECCCCHHHHH
T ss_pred cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhccCCC-eeEEeCCCCHHHHH
Confidence 3 38999999999987543234455566666655 345777888888652 2344422233321 47889999999999
Q ss_pred hhHHHHHHH
Q 000974 840 LFLGRLIEA 848 (1205)
Q Consensus 840 ~i~~~~l~~ 848 (1205)
.||+..+..
T Consensus 204 ~il~~~~~~ 212 (386)
T 2qby_A 204 DILTKRAQM 212 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987754
No 194
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.61 E-value=1.4e-07 Score=132.52 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=79.7
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCccccc
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVR 493 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r 493 (1205)
.+..+.||+|||||.+++.+|+.++ ..++.++|.+-+.- ..+..+|.-+... .+..+||||+.+-..-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg-----r~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG-----RFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC-----CeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHHH
Confidence 4567899999999999999999997 34556666543321 1223444444443 3599999999874210
Q ss_pred chhhhHHHHHHHHHHHHHhh----------C--cccCCcEEEEccccc----cccccccccCCCCccccccCCCCCchhh
Q 000974 494 SSKQEQIHNSIVSTLLALMD----------G--LDSRGQVVLIGATNR----VDAIDGALRRPGRFDREFNFPLPGCEAR 557 (1205)
Q Consensus 494 ~~~~~~~~~~v~~~Ll~~ld----------~--~~~~~~viVI~atn~----~~~ld~aL~r~gRf~~~I~~~~P~~eer 557 (1205)
-......+..+...+. + +.-...+.||+|.|+ ...|+.+|+. || +.|.+..|+.+..
T Consensus 673 ----LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 673 ----LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMI 745 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHH
Confidence 0000011111111111 1 112235677888885 2468999988 78 6699999999887
Q ss_pred hhhh
Q 000974 558 AEIL 561 (1205)
Q Consensus 558 ~~Il 561 (1205)
.+|+
T Consensus 746 ~ei~ 749 (3245)
T 3vkg_A 746 AQVM 749 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 195
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=1.4e-08 Score=115.23 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=81.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhcc--ccccCCceeeeccchhhHH
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGE--ARRTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~--A~~~~p~ILfiDEid~l~~ 778 (1205)
++||+||||||||++|+++++.+. ..+++.++.+.... .......+..+... .....+.||||||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC---TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC---hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 599999999999999999999852 23455555544321 11212222322211 1124578999999999865
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 779 NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 779 ~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.. .+.|+.+|+... ..+.||++||.+ ..+.+.+..++ .++.|++|+.+++..++..++.
T Consensus 117 ~~----~~~L~~~le~~~--~~~~~i~~~~~~-~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 117 DA----QAALRRTMEMYS--KSCRFILSCNYV-SRIIEPIQSRC---AVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp HH----HHTTGGGTSSSS--SSEEEEEEESCG-GGSCHHHHTTC---EEEECCCCCHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhcC--CCCeEEEEeCCh-hhcchHHHhhC---eEEEecCCCHHHHHHHHHHHHH
Confidence 33 333444444432 466777778876 55555222332 4788999999999888887764
No 196
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=2.5e-08 Score=113.27 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=83.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcc----cCccccCCCccccCCCCCCChhhHHHHhhcccc-------ccCCceeeeccc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEAR-------RTTPSILYIPQF 773 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~-------~~~p~ILfiDEi 773 (1205)
++||+||+|||||++|+++++.+. ..+++.++.+... + ...++.++..+. ...+.||||||+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~ 116 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR-----G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEA 116 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC-----S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc-----C--hHHHHHHHHHHHhccccCCCCCceEEEEECc
Confidence 499999999999999999999852 2345555543321 1 233444443222 223789999999
Q ss_pred hhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHHH
Q 000974 774 NLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 774 d~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
|.+.... .+.|+.+|+.... .+.+|.+||.+ ..+.+.+..++ .++.|++|+.++...+++.++..
T Consensus 117 ~~l~~~~----~~~L~~~le~~~~--~~~~il~~~~~-~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 117 DSMTAGA----QQALRRTMELYSN--STRFAFACNQS-NKIIEPLQSQC---AILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp GGSCHHH----HHTTHHHHHHTTT--TEEEEEEESCG-GGSCHHHHTTS---EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHH----HHHHHHHHhccCC--CceEEEEeCCh-hhchhHHHhhc---eEEeecCCCHHHHHHHHHHHHHH
Confidence 9986543 3456667766543 45556666765 45554222222 47889999999999999887754
No 197
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=4.1e-08 Score=111.71 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=79.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc----CccccCCCccccCCCCCCChhhHHHHhhcc--ccccCCceeeeccchhhH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEK----FPVHSLGLPALLSDPSAKTPEEALVHIFGE--ARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~----~~~~~l~~~~l~~~~~~g~se~~~~~lf~~--A~~~~p~ILfiDEid~l~ 777 (1205)
+++||+||||||||++|+++++.+.+ ..++.++.+..... ......+...... .....++||||||+|.+.
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI---NVIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH---HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch---HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 35999999999999999999998522 22444433221100 0001112221111 111457899999999986
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 778 ENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 778 ~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
... .+.|+.+|+.... .+.+|++||.+ ..+.+.+..++ .++.|++|+.++...+++.++.
T Consensus 124 ~~~----~~~L~~~le~~~~--~~~~i~~~~~~-~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 124 QDA----QQALRRTMEMFSS--NVRFILSCNYS-SKIIEPIQSRC---AIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHH----HHHHHHHHHHTTT--TEEEEEEESCG-GGSCHHHHHTE---EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHhcCC--CCeEEEEeCCc-cccCHHHHhhC---cEEEecCCCHHHHHHHHHHHHH
Confidence 543 4456667766543 55666677776 45554222333 3778999998888888877664
No 198
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.51 E-value=1e-07 Score=111.97 Aligned_cols=195 Identities=20% Similarity=0.235 Sum_probs=115.5
Q ss_pred ccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHH
Q 000974 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~ 457 (1205)
+..++|.......+.+.+.. + .....+|||+|++|||||++|++++...... ..+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~~~ 202 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIPRD 202 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSCHH
T ss_pred chhhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCCHH
Confidence 44577777776666665543 1 1334579999999999999999999876543 356888888765432
Q ss_pred H-----HHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c---
Q 000974 458 W-----VGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S--- 517 (1205)
Q Consensus 458 ~-----~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~--- 517 (1205)
. +|... .....+|..|.. .+||||||+.|. ..++..|+..|+... .
T Consensus 203 ~~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 203 IFEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSB
T ss_pred HHHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 2 22100 011234555544 499999999884 456667777776321 1
Q ss_pred -CCcEEEEccccccccccccccCCCCcc-------ccccCCCCCchhhh----hhhhcccc----ccCC---CCchhHHH
Q 000974 518 -RGQVVLIGATNRVDAIDGALRRPGRFD-------REFNFPLPGCEARA----EILDIHTR----KWKQ---PPSRELKS 578 (1205)
Q Consensus 518 -~~~viVI~atn~~~~ld~aL~r~gRf~-------~~I~~~~P~~eer~----~Il~~~l~----~~~~---~~~~~~l~ 578 (1205)
..++.||+|||.. +...+ ..|+|. ..+.+..|...+|. .++..++. .++. .++.+.+.
T Consensus 269 ~~~~~rii~at~~~--l~~~~-~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 269 IEVNVRILAATNRN--IKELV-KEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp EECCCEEEEEESSC--HHHHH-HTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeccEEEEEeCCCC--HHHHH-HcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1257789999862 22111 123332 23345556665553 33333332 2222 35677777
Q ss_pred HHhhhhhcccchhHHHHhHHHHHH
Q 000974 579 ELAASCVGYCGADLKALCTEAAIR 602 (1205)
Q Consensus 579 ~LA~~t~G~sgadI~~L~~eA~~~ 602 (1205)
.|..+.--.+.++|++++..|+..
T Consensus 346 ~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 346 LLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHh
Confidence 776554333567899988887753
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.50 E-value=5.1e-08 Score=98.77 Aligned_cols=106 Identities=17% Similarity=0.277 Sum_probs=63.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCCccc
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~L~~ 491 (1205)
+...++|+||+|+|||+|+++++..+...+..+ +.+++.++... +....+.||+|||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~--~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA--AYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE--EEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE--EEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 345799999999999999999999886544333 34455544332 1123467999999988653
Q ss_pred ccchhhhHHHHHHHHHHHHHhhCcccCCcE-EEEcccccccccc--ccccCCCCccccc
Q 000974 492 VRSSKQEQIHNSIVSTLLALMDGLDSRGQV-VLIGATNRVDAID--GALRRPGRFDREF 547 (1205)
Q Consensus 492 ~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-iVI~atn~~~~ld--~aL~r~gRf~~~I 547 (1205)
.. ...|+..++.+...+.. +||++...|..+. +.|.+ |+...+
T Consensus 98 ~~-----------~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 98 EE-----------QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp HH-----------HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred HH-----------HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 21 22344444433333343 5554433454332 56666 664433
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.50 E-value=5.3e-08 Score=112.03 Aligned_cols=127 Identities=18% Similarity=0.320 Sum_probs=82.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
..++|+||||||||+||++|++.+ +.++...+.+.+. ....+..++... ...+|+||||++.+.....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l-~~~~~~~sg~~~~-------~~~~l~~~~~~~--~~~~v~~iDE~~~l~~~~~e- 120 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL-QTNIHVTSGPVLV-------KQGDMAAILTSL--ERGDVLFIDEIHRLNKAVEE- 120 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH-TCCEEEEETTTCC-------SHHHHHHHHHHC--CTTCEEEEETGGGCCHHHHH-
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEechHhc-------CHHHHHHHHHHc--cCCCEEEEcchhhcCHHHHH-
Confidence 469999999999999999999998 5555433322221 112344444322 24579999999998764333
Q ss_pred HHHHHHHHHHhcC-------C---------CCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 784 LRAVLLTLLEELP-------S---------HLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 784 ~~~~ll~lL~~~~-------~---------~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.|...|.... . -..+.++++|+.+ ..|++.+..+|. .++.+++|+.+++..|++.+..
T Consensus 121 ---~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~-~~Ls~~l~sR~~--l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 121 ---LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS-GLLSSPLRSRFG--IILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---HHHHHHHTSCCCC---------------CCCEEEEEESCG-GGSCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc-ccCCHHHHHhcC--ceeeCCCCCHHHHHHHHHHHHH
Confidence 3333343211 0 1245667778877 678774444443 5688999999999999988765
No 201
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=5e-08 Score=112.37 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=79.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc-----CccccCCCccccCCCCCCChhhHHHHhhcc----------------ccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEK-----FPVHSLGLPALLSDPSAKTPEEALVHIFGE----------------ARR 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~-----~~~~~l~~~~l~~~~~~g~se~~~~~lf~~----------------A~~ 762 (1205)
+++||+||||||||++|+++++.+.. ..++.++.+... | ...+++.+.. ...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER-----G--ISIVREKVKNFARLTVSKPSKHDLENYPC 131 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC-----C--HHHHTTHHHHHHHSCCCCCCTTHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc-----c--hHHHHHHHHHHhhhcccccchhhcccCCC
Confidence 35999999999999999999998621 234444443321 1 1112211111 112
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhH
Q 000974 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
..+.||||||++.+..... +.|+.+|+.... .+.+|.+||.+ ..+++.+..++ .++.|.+|+.++...++
T Consensus 132 ~~~~vliiDE~~~l~~~~~----~~Ll~~le~~~~--~~~~il~~~~~-~~l~~~l~sR~---~~i~~~~~~~~~~~~~l 201 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQ----SALRRTMETYSG--VTRFCLICNYV-TRIIDPLASQC---SKFRFKALDASNAIDRL 201 (353)
T ss_dssp CSCEEEEETTGGGSCHHHH----HHHHHHHHHTTT--TEEEEEEESCG-GGSCHHHHHHS---EEEECCCCCHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHH----HHHHHHHHhcCC--CceEEEEeCch-hhCcchhhccC---ceEEeCCCCHHHHHHHH
Confidence 3456999999999876443 456677777654 34444566766 45555233332 47789999999988888
Q ss_pred HHHHH
Q 000974 843 GRLIE 847 (1205)
Q Consensus 843 ~~~l~ 847 (1205)
+..+.
T Consensus 202 ~~~~~ 206 (353)
T 1sxj_D 202 RFISE 206 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 202
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.47 E-value=3.7e-08 Score=110.97 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=68.1
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHHHHHHHHHHHHHHHHhhcCCceEEEeccCC
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDG 488 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid~ 488 (1205)
|+.+.+.++|+||||||||+||.++|... +..+.|+.+...+.+..+....+..+..+++.+.... +||||+|+.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~a 193 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEAL---GGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKN 193 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHH---HTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccc
Confidence 45566678999999999999999999873 2234455552111122122334555555666555543 999999999
Q ss_pred cccccchh-hhHHHHHHHHHHHHHhhCcccCCcEEEEcccccccccccc
Q 000974 489 LAPVRSSK-QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGA 536 (1205)
Q Consensus 489 L~~~r~~~-~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~a 536 (1205)
+.+..... ........+.+++..|..+....++.+|+++|. ...+++
T Consensus 194 L~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 194 VIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp TC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 86543221 000112334455555544433445677777773 344443
No 203
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.47 E-value=4.5e-08 Score=120.98 Aligned_cols=132 Identities=10% Similarity=0.086 Sum_probs=78.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC----CCccccCCCC----CCChhhHHHHhhccccccCCceeeeccchhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL----GLPALLSDPS----AKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l----~~~~l~~~~~----~g~se~~~~~lf~~A~~~~p~ILfiDEid~l 776 (1205)
++||+||||||||++|++|++.+ ...++.. ....+..... .|.... ....+.. ...+|||||||+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~-~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~-~~G~l~~---A~~gil~IDEid~l 403 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA-PRAVYTTGKGSTAAGLTAAVVREKGTGEYYL-EAGALVL---ADGGIAVIDEIDKM 403 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC-SCEECCCTTCSTTTTSEEECSSGGGTSSCSE-EECHHHH---HSSSEECCTTTTCC
T ss_pred ceEEECCCchHHHHHHHHHHHhC-CCceecCCCccccccccceeeeccccccccc-cCCeeEe---cCCCcEEeehhhhC
Confidence 69999999999999999999987 3333332 1222221110 010000 0001111 23589999999998
Q ss_pred HHhHHHHHHHHHHHHHHhcC-----------CCCCeEEeccCCcCCc------------cccCCCccccCCCceeeecCC
Q 000974 777 WENAHEQLRAVLLTLLEELP-----------SHLPILLLGSSSVPLA------------EVEGDPSTVFPLRSVYQVEKP 833 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~~-----------~~~~v~vIattn~~~~------------~Ld~~~~~~f~~r~ii~~~~P 833 (1205)
.... .+.|+..|++-. -..++.||||||.+.. .|++.+..+|+ -..+.++.|
T Consensus 404 ~~~~----q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFD-l~~~~~~~~ 478 (595)
T 3f9v_A 404 RDED----RVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFD-LIFILKDQP 478 (595)
T ss_dssp CSHH----HHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCS-CCEEECCTT
T ss_pred CHhH----hhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCe-EEEEeCCCC
Confidence 6544 345666776421 1347889999997621 67774444553 134446777
Q ss_pred CccchhhhHHHHHH
Q 000974 834 STEDRSLFLGRLIE 847 (1205)
Q Consensus 834 ~~~eR~~i~~~~l~ 847 (1205)
+.+ ...|.++++.
T Consensus 479 ~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 479 GEQ-DRELANYILD 491 (595)
T ss_dssp HHH-HHHHHHHHHT
T ss_pred CHH-HHHHHHHHHH
Confidence 777 7777777764
No 204
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.46 E-value=1.4e-07 Score=109.80 Aligned_cols=192 Identities=24% Similarity=0.314 Sum_probs=113.8
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH--
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-- 456 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-- 456 (1205)
..++|.......+.+.+..- ......+||+|++||||+++|+++....++... |+.++|+.+-.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~---fv~vnc~~~~~~~ 194 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGA---FVDLNCASIPQEL 194 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC---EEEEESSSSCTTT
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCC---cEEEEcccCChHH
Confidence 35778887777776655431 123456999999999999999999987765432 88888875432
Q ss_pred ---HHHHHHH-------HHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcc-----c----
Q 000974 457 ---KWVGEAE-------RQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLD-----S---- 517 (1205)
Q Consensus 457 ---~~~g~~e-------~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~-----~---- 517 (1205)
..+|... ......|+.|.. .+||||||+.|. ..++..|+..|+.-. .
T Consensus 195 ~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 195 AESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBE
T ss_pred HHHHhcCccccccCCcccccCChHhhcCC---CeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcce
Confidence 2222110 011234555544 399999999883 456677888776321 1
Q ss_pred CCcEEEEccccccccccccccCCCCccc-------cccCCCCCchhh----hhhhhccccc----cC---CCCchhHHHH
Q 000974 518 RGQVVLIGATNRVDAIDGALRRPGRFDR-------EFNFPLPGCEAR----AEILDIHTRK----WK---QPPSRELKSE 579 (1205)
Q Consensus 518 ~~~viVI~atn~~~~ld~aL~r~gRf~~-------~I~~~~P~~eer----~~Il~~~l~~----~~---~~~~~~~l~~ 579 (1205)
.-++.||++||.. +...+ ..|+|.. ++.+..|...+| ..++..++.. .+ ..++.+.+..
T Consensus 261 ~~~~rii~at~~~--l~~~v-~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 337 (368)
T 3dzd_A 261 EVDIRVISATNKN--LEEEI-KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEY 337 (368)
T ss_dssp ECCCEEEEEESSC--HHHHH-HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred eeeeEEEEecCCC--HHHHH-HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 1246788888852 22211 1233322 333444444443 4444444432 22 3467788777
Q ss_pred HhhhhhcccchhHHHHhHHHHH
Q 000974 580 LAASCVGYCGADLKALCTEAAI 601 (1205)
Q Consensus 580 LA~~t~G~sgadI~~L~~eA~~ 601 (1205)
|..+.---+.++|.+++..|+.
T Consensus 338 L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 338 LMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHH
Confidence 7766522355888888887764
No 205
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.45 E-value=4.6e-08 Score=114.10 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=84.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcc---cCccccCCCccccC------------CC---CCC-ChhhHHHHhhcccc-ccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLS------------DP---SAK-TPEEALVHIFGEAR-RTT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~---~~~~~~l~~~~l~~------------~~---~~g-~se~~~~~lf~~A~-~~~ 764 (1205)
.++|+||||||||++++++++.+. +.+++.+++..... +. ..| .....+..+...+. ...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 699999999999999999998864 24556655433211 00 011 11222222222222 234
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCC--CCCeEEeccCCcCC--ccccCCCccccCCCceeeecCCCccchhh
Q 000974 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPS--HLPILLLGSSSVPL--AEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~--~~~v~vIattn~~~--~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
|.||||||++.+. ......|..++..+.. ..++.||++||.+. ..+.+.+..+|. ..+++|++++.++...
T Consensus 126 ~~vlilDE~~~l~----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~-~~~i~~~pl~~~~~~~ 200 (389)
T 1fnn_A 126 YMFLVLDDAFNLA----PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG-KYVIRFSPYTKDQIFD 200 (389)
T ss_dssp CEEEEEETGGGSC----HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHT-TCEEECCCCBHHHHHH
T ss_pred eEEEEEECccccc----hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCC-CceEEeCCCCHHHHHH
Confidence 7899999999983 3445556566654432 14777888888751 122221222232 1368899999999999
Q ss_pred hHHHHHHH
Q 000974 841 FLGRLIEA 848 (1205)
Q Consensus 841 i~~~~l~~ 848 (1205)
|++..+..
T Consensus 201 ~l~~~~~~ 208 (389)
T 1fnn_A 201 ILLDRAKA 208 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888764
No 206
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.45 E-value=1.5e-07 Score=110.51 Aligned_cols=213 Identities=16% Similarity=0.060 Sum_probs=117.0
Q ss_pred cCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHH-HhhhhhcCCeEEEEEecchh---hHH
Q 000974 381 IGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARAL-ACAASKAGQKVSFYMRKGAD---VLS 456 (1205)
Q Consensus 381 i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laral-A~~l~~~~~~~~~~~i~~~~---l~~ 456 (1205)
|.|++.+|..|.-++.-. +.. +...-||||.|+||| ||+||+++ ++.+. ...|....++. +..
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----R~~ft~g~~ss~~gLt~ 281 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAP----RGVYVDLRRTELTDLTA 281 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCS----SEEEEEGGGCCHHHHSE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCC----CeEEecCCCCCccCceE
Confidence 899999887776554321 111 223348999999999 99999999 76653 23343322221 111
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCc-------ccCCcEEEEcccc
Q 000974 457 KWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGL-------DSRGQVVLIGATN 528 (1205)
Q Consensus 457 ~~~g~~-e~~l~~lf~~a~~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~-------~~~~~viVI~atn 528 (1205)
...+.+ ...-...+..|.. .|||||||+.+ ...++..|+..|+.- .-...+.||||+|
T Consensus 282 s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 282 VLKEDRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp EEEESSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred EEEcCCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 000000 0000112233333 39999999887 345677788888732 1124689999999
Q ss_pred ccc-----------cccccccCCCCcccc-ccCCCCCchh-------------hhhhhhcccc--ccCCCCchhHHHHHh
Q 000974 529 RVD-----------AIDGALRRPGRFDRE-FNFPLPGCEA-------------RAEILDIHTR--KWKQPPSRELKSELA 581 (1205)
Q Consensus 529 ~~~-----------~ld~aL~r~gRf~~~-I~~~~P~~ee-------------r~~Il~~~l~--~~~~~~~~~~l~~LA 581 (1205)
+.+ .|+++++. ||+.. +.++.|+.+. .++++ .+++ .....+++++.+.|.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi-~~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYL-LYAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHH-HHHHHHCSCCEECHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHH-HHHHhcCCCceeCHHHHHHHH
Confidence 865 67888888 99754 4455565433 11111 1222 223344444433332
Q ss_pred hh-----------------hhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhhhhccc
Q 000974 582 AS-----------------CVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIEAMSTI 639 (1205)
Q Consensus 582 ~~-----------------t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~al~~i 639 (1205)
.. ..|.+.+.+..|++-|...|..+... .++.+|+..|+.-+
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~----------------~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD----------------DVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS----------------EECHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC----------------CCCHHHHHHHHHHH
Confidence 11 22456677777877777666665432 36777777665533
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.43 E-value=1.1e-07 Score=100.63 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=59.8
Q ss_pred cccccccCChhH----HHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 375 SVSFDDIGGLSE----YIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 375 ~~~~~~i~Gl~~----~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
..+|+++++... ++..+..++.. .+. ...+.+++|+||+|||||+||+++++.+...+..+ +.++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~--~~~~ 89 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAE---YEP------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSS--LIVY 89 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHH---CCS------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCE--EEEE
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHH---hhh------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEE
Confidence 457888776542 33444444332 110 01237899999999999999999999987655444 4455
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHhhcCCceEEEeccCCcc
Q 000974 451 GADVLSKWVGEAE-RQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 451 ~~~l~~~~~g~~e-~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
+..++..+..... ..+..++..... +.+|||||++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 5555544322111 011223333322 3599999997653
No 208
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.43 E-value=1.6e-07 Score=108.99 Aligned_cols=134 Identities=16% Similarity=0.253 Sum_probs=81.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc-cccCC--------------CccccC-CCCCCChhhHHHHhhcccc----ccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFP-VHSLG--------------LPALLS-DPSAKTPEEALVHIFGEAR----RTT 764 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~-~~~l~--------------~~~l~~-~~~~g~se~~~~~lf~~A~----~~~ 764 (1205)
.+||+||+|||||++|+++++.+.... ..... .++++. ..........++.++..+. ...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 489999999999999999999763211 00000 001110 0000011223555555543 334
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHH
Q 000974 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGR 844 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~ 844 (1205)
+.||||||+|.+... ..+.|+.+|+.... .+++|++|+.+ ..+.+. ++..-.++.|++|+.++...+++.
T Consensus 120 ~~vliiDe~~~l~~~----~~~~Ll~~le~~~~--~~~~Il~~~~~-~~l~~~---l~sr~~~i~~~~l~~~~~~~~l~~ 189 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRH----SFNALLKTLEEPPE--HVKFLLATTDP-QKLPVT---ILSRCLQFHLKALDVEQIRHQLEH 189 (373)
T ss_dssp SEEEEEECGGGSCHH----HHHHHHHHHHSCCS--SEEEEEEESCG-GGSCHH---HHTTSEEEECCCCCHHHHHHHHHH
T ss_pred eEEEEEECcchhcHH----HHHHHHHHHhcCCC--ceEEEEEeCCh-HhCcHH---HHhheeEeeCCCCCHHHHHHHHHH
Confidence 689999999998643 34556677766443 56666666665 445442 222125788999999999999988
Q ss_pred HHHH
Q 000974 845 LIEA 848 (1205)
Q Consensus 845 ~l~~ 848 (1205)
++..
T Consensus 190 ~~~~ 193 (373)
T 1jr3_A 190 ILNE 193 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 209
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.42 E-value=7.9e-08 Score=87.77 Aligned_cols=78 Identities=33% Similarity=0.486 Sum_probs=67.0
Q ss_pred cCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceee
Q 000974 548 NFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTV 627 (1205)
Q Consensus 548 ~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~I 627 (1205)
.-.+|+.++|.+||+.+++++....+.+ +..||..|.||||+||.++|++|++.++++.. ..|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvd-l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~----------------~~I 69 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMYALRERR----------------VHV 69 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCC-CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC----------------SEE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC----------------CCC
Confidence 4578999999999999999987654444 47899999999999999999999999998752 359
Q ss_pred eehhhhhhhcccCcc
Q 000974 628 EKYHFIEAMSTITPA 642 (1205)
Q Consensus 628 t~~df~~al~~i~ps 642 (1205)
+.+||..|+..+.|.
T Consensus 70 ~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 70 TQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHccC
Confidence 999999999888764
No 210
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=1.2e-06 Score=100.36 Aligned_cols=188 Identities=18% Similarity=0.107 Sum_probs=106.5
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch-
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA- 452 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~- 452 (1205)
+......++|.+..++.|.+ +.. ..++|+||+|+|||+|++.+++.+.. .+.++...+.
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~ 67 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFE 67 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGT
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhc
Confidence 33455678999999998877 431 37999999999999999999988742 2333333221
Q ss_pred --------hhHHHHHHHH-----------------------------------HHHHHHHHHHHhhc--CCceEEEeccC
Q 000974 453 --------DVLSKWVGEA-----------------------------------ERQLKLLFEEAQRN--QPSIIFFDEID 487 (1205)
Q Consensus 453 --------~l~~~~~g~~-----------------------------------e~~l~~lf~~a~~~--~p~VL~IDEid 487 (1205)
.++....... ...+..++...... .|.||||||+|
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~ 147 (357)
T 2fna_A 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 147 (357)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGG
T ss_pred cccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHH
Confidence 1111110000 01223344433332 38899999999
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEcccccccccc---------ccccCCCCccccccCCCCCchhhh
Q 000974 488 GLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAID---------GALRRPGRFDREFNFPLPGCEARA 558 (1205)
Q Consensus 488 ~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld---------~aL~r~gRf~~~I~~~~P~~eer~ 558 (1205)
.+.... ...++..|...++.. .++.||.++.....+. ..+. +|+...+.+++.+.++..
T Consensus 148 ~~~~~~-------~~~~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 148 ELVKLR-------GVNLLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GGGGCT-------TCCCHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHH
T ss_pred HhhccC-------chhHHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHH
Confidence 885310 011222232233321 2455555554322111 1122 356578899999999999
Q ss_pred hhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHh
Q 000974 559 EILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALC 596 (1205)
Q Consensus 559 ~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~ 596 (1205)
+++...+...+...... ..+...+.|+.. -+..++
T Consensus 216 ~~l~~~~~~~~~~~~~~--~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 216 EFLRRGFQEADIDFKDY--EVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp HHHHHHHHHHTCCCCCH--HHHHHHHCSCHH-HHHHHH
T ss_pred HHHHHHHHHcCCCCCcH--HHHHHHhCCCHH-HHHHHH
Confidence 99987665433333332 567777777543 344443
No 211
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.40 E-value=1.2e-07 Score=109.17 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=80.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCcccc---------------CCCcccc--CCC--CCCChhhHHHHhhccccc--
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS---------------LGLPALL--SDP--SAKTPEEALVHIFGEARR-- 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~---------------l~~~~l~--~~~--~~g~se~~~~~lf~~A~~-- 762 (1205)
..+||+||+|+|||++|+++|+.+....... -..++++ ... ........++.++..+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 3599999999999999999999863211000 0001111 000 001123446666666543
Q ss_pred --cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhh
Q 000974 763 --TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSL 840 (1205)
Q Consensus 763 --~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~ 840 (1205)
....|++|||+|.+.... .+.|+..|++.+ ..+++|.+||.+ ..|.+.+.++. .++.|++|+.++...
T Consensus 105 ~~~~~kvviIdead~l~~~a----~naLLk~lEep~--~~~~~Il~t~~~-~~l~~ti~SRc---~~~~~~~~~~~~~~~ 174 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLTDAA----ANALLKTLEEPP--AETWFFLATREP-ERLLATLRSRC---RLHYLAPPPEQYAVT 174 (334)
T ss_dssp TTSSCEEEEESCGGGBCHHH----HHHHHHHHTSCC--TTEEEEEEESCG-GGSCHHHHTTS---EEEECCCCCHHHHHH
T ss_pred ccCCcEEEEECchhhcCHHH----HHHHHHHhcCCC--CCeEEEEEeCCh-HhCcHHHhhcc---eeeeCCCCCHHHHHH
Confidence 346899999999986543 345666666543 355556666666 56665333322 478899999988877
Q ss_pred hHHHH
Q 000974 841 FLGRL 845 (1205)
Q Consensus 841 i~~~~ 845 (1205)
+++..
T Consensus 175 ~L~~~ 179 (334)
T 1a5t_A 175 WLSRE 179 (334)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76643
No 212
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=84.60 Aligned_cols=74 Identities=36% Similarity=0.541 Sum_probs=63.6
Q ss_pred CCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeee
Q 000974 550 PLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEK 629 (1205)
Q Consensus 550 ~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~ 629 (1205)
|+|+.++|.+||+.+++++....+.+ +..||..|.||||+||.++|++|++.++++.. ..|+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~d-l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMYALRERR----------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCC-HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC----------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC----------------CCCCH
Confidence 68999999999999999887654444 58999999999999999999999999998742 35899
Q ss_pred hhhhhhhcccC
Q 000974 630 YHFIEAMSTIT 640 (1205)
Q Consensus 630 ~df~~al~~i~ 640 (1205)
+||..|+..+.
T Consensus 64 ~d~~~Al~~v~ 74 (78)
T 3kw6_A 64 EDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.7e-07 Score=106.39 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=82.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc-----cCccccCCCccccCCCCCCChhhHHHHhhccccccC----Cceeeeccch
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE-----KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTT----PSILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~-----~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~----p~ILfiDEid 774 (1205)
+.+||+||||+|||++|.++++.+. +..++.++... . ...-..++.++..+...+ ..|+||||+|
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~---~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E---NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S---CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C---CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4799999999999999999998641 22344443221 0 112335677777765432 3699999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHH
Q 000974 775 LWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLI 846 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l 846 (1205)
.+.... .+.|+..|.+.++ ..+||++ |+.+ ..|.+ .+.. | ++.|.+|+.++...+++..+
T Consensus 93 ~lt~~a----~naLLk~LEep~~-~t~fIl~-t~~~-~kl~~---tI~S-R-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMTQQA----ANAFLKALEEPPE-YAVIVLN-TRRW-HYLLP---TIKS-R-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBCHHH----HHHTHHHHHSCCT-TEEEEEE-ESCG-GGSCH---HHHT-T-SEEEECCCCHHHHHHHHHHH
T ss_pred HhCHHH----HHHHHHHHhCCCC-CeEEEEE-ECCh-HhChH---HHHc-e-eEeCCCCCHHHHHHHHHHHh
Confidence 986543 4557777776543 3344444 4555 44444 2333 3 89999999999888887654
No 214
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=3.8e-07 Score=105.26 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=77.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc--cccCCC------------------cc-c-cCCCCCCC-hhhHHHHhhcccc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFP--VHSLGL------------------PA-L-LSDPSAKT-PEEALVHIFGEAR 761 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~--~~~l~~------------------~~-l-~~~~~~g~-se~~~~~lf~~A~ 761 (1205)
++||+||+|||||++++++++.+.+-. -+.++. .. + +.....+. ....+++++..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 117 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHH
Confidence 499999999999999999999541111 000000 00 0 00000011 1112333333221
Q ss_pred --------------ccCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCce
Q 000974 762 --------------RTTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSV 827 (1205)
Q Consensus 762 --------------~~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~i 827 (1205)
...|.||+|||++.+.... .+.|+..|..... ++.||.+|+.+ ..+.+.+.+++ .+
T Consensus 118 ~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~----~~~L~~~le~~~~--~~~~Il~t~~~-~~l~~~l~sR~---~~ 187 (354)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA----QAALRRTMEKYSK--NIRLIMVCDSM-SPIIAPIKSQC---LL 187 (354)
T ss_dssp TTTC------------CCEEEEEECTTSSCHHH----HHHHHHHHHHSTT--TEEEEEEESCS-CSSCHHHHTTS---EE
T ss_pred HhccccccccccccCCCCeEEEEeCccccCHHH----HHHHHHHHHhhcC--CCEEEEEeCCH-HHHHHHHHhhc---eE
Confidence 2256799999999965433 4456667776654 45556667766 44444222222 57
Q ss_pred eeecCCCccchhhhHHHHHHH
Q 000974 828 YQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 828 i~~~~P~~~eR~~i~~~~l~~ 848 (1205)
+.|++|+.++...+++.++..
T Consensus 188 ~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 188 IRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp EECCCCCHHHHHHHHHHHHHH
T ss_pred EecCCcCHHHHHHHHHHHHHH
Confidence 889999999999999888754
No 215
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.8e-07 Score=106.08 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=76.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcccC----ccccCCCccccCCCCCCChhhHHHHhhccc------cccCCceeeeccch
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKF----PVHSLGLPALLSDPSAKTPEEALVHIFGEA------RRTTPSILYIPQFN 774 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~----~~~~l~~~~l~~~~~~g~se~~~~~lf~~A------~~~~p~ILfiDEid 774 (1205)
++||+||||||||++|+++++.+.+- .++.++.+.. .| ...++.++... ....+.|++|||+|
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~-----~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~ 120 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD-----RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEAD 120 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-----CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-----cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCC
Confidence 59999999999999999999986321 2333333221 11 12233222111 11236899999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchhhhHHHHHH
Q 000974 775 LWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 775 ~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
.+.... .+.|+..|+.... .+.+|.+||.+ ..+.+.+.+++ .++.|..++.++...++..++.
T Consensus 121 ~l~~~~----~~~L~~~le~~~~--~~~~il~~n~~-~~i~~~i~sR~---~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 121 AMTNAA----QNALRRVIERYTK--NTRFCVLANYA-HKLTPALLSQC---TRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp GSCHHH----HHHHHHHHHHTTT--TEEEEEEESCG-GGSCHHHHTTS---EEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCHHH----HHHHHHHHhcCCC--CeEEEEEecCc-cccchhHHhhc---eeEeccCCCHHHHHHHHHHHHH
Confidence 986543 3456777776654 33444556766 45544233332 3677888888887777776663
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.31 E-value=1.5e-07 Score=95.27 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAH 781 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~ 781 (1205)
..++|+||+|+|||+|+++++..+. +..++.++...+... +....|.||+|||++.+.....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------------DAAFEAEYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------GGGGGCSEEEEESTTCCCSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------HHHhCCCEEEEeCccccChHHH
Confidence 4689999999999999999999763 222444443333221 1123578999999998765444
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeccCCcCCcccc
Q 000974 782 EQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVE 815 (1205)
Q Consensus 782 ~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld 815 (1205)
..++..|..+.+. ...++|| |||.++..+.
T Consensus 101 ~~l~~li~~~~~~---g~~~iii-ts~~~p~~l~ 130 (149)
T 2kjq_A 101 ALLFSIFNRFRNS---GKGFLLL-GSEYTPQQLV 130 (149)
T ss_dssp HHHHHHHHHHHHH---TCCEEEE-EESSCTTTSS
T ss_pred HHHHHHHHHHHHc---CCcEEEE-ECCCCHHHcc
Confidence 4444433333321 2222444 6676556554
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.24 E-value=3e-07 Score=104.49 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=58.0
Q ss_pred ccccccCChh----HHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhh-hcCCeEEEEEec
Q 000974 376 VSFDDIGGLS----EYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS-KAGQKVSFYMRK 450 (1205)
Q Consensus 376 ~~~~~i~Gl~----~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-~~~~~~~~~~i~ 450 (1205)
.+|+++.+-. .++..+..++.. + +-....+++|+||||||||+||+++|+.+. ..+..+.+ +.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~---~-------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~--~~ 188 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQ---Y-------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL--LH 188 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHH---C-------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE--EE
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHh---c-------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE--EE
Confidence 5788876533 233444444432 1 111357899999999999999999999998 77655544 44
Q ss_pred chhhHHHHHHHH-HHHHHHHHHHHhhcCCceEEEeccCCc
Q 000974 451 GADVLSKWVGEA-ERQLKLLFEEAQRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 451 ~~~l~~~~~g~~-e~~l~~lf~~a~~~~p~VL~IDEid~L 489 (1205)
+.+++..+.... ...+..++.... ...|||||||+..
T Consensus 189 ~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 189 FPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 455544332210 001112222222 3459999999754
No 218
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.24 E-value=5.2e-07 Score=82.77 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=62.7
Q ss_pred CchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhh
Q 000974 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHF 632 (1205)
Q Consensus 553 ~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df 632 (1205)
+.++|.+||+.+++++....+.+ +..||..|.||||+||.++|++|++.++++.. ..|+.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvd-l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIR-WELISRLCPNSTGAELRSVCTEAGMFAIRARR----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCC-HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccC-HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc----------------ccCCHHHH
Confidence 57899999999999987765554 48999999999999999999999999999853 24899999
Q ss_pred hhhhcccCccccc
Q 000974 633 IEAMSTITPAAHR 645 (1205)
Q Consensus 633 ~~al~~i~ps~~r 645 (1205)
..|+..+.+...+
T Consensus 65 ~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 65 LKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHhcCccc
Confidence 9999998876443
No 219
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=1.7e-07 Score=97.51 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=56.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc---cCccccCCCccccCCC----CCCChhhHHHHhhccccccCCceeeeccchhh
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLSDP----SAKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~---~~~~~~l~~~~l~~~~----~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l 776 (1205)
..++|+||||||||+|+++|++.+. +..++.++..+++..+ ..+... .++.. -..|.||+|||++..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT----KFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS----HHHHH--HHTCSEEEEETCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH----HHHHH--hcCCCEEEEeCCCCC
Confidence 4699999999999999999999863 3444444443333110 000101 11111 125789999999853
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccc
Q 000974 777 WENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 777 ~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L 814 (1205)
... ......|..+++.... .+..+|.|||.++..+
T Consensus 113 ~~~--~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 113 RLS--DWQRELISYIITYRYN-NLKSTIITTNYSLQRE 147 (180)
T ss_dssp CCC--HHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC-
T ss_pred cCC--HHHHHHHHHHHHHHHH-cCCCEEEEcCCChhHh
Confidence 211 1222234444444322 2345666888875553
No 220
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.05 E-value=1.4e-06 Score=98.32 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=66.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCc--cccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHH
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFP--VHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHE 782 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~--~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~ 782 (1205)
.+||+||||||||+||.+++.. .+.+ |+.+...+.+..+ ....+..+..++..+.+.. +||||+++.+......
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~~-~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSGY-NTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTTC-BCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhhh-hcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 4799999999999999999987 3444 4444223333333 2445666666666665544 9999999998643222
Q ss_pred --------HHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000974 783 --------QLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 783 --------~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
+....++..|..+-...++.+|+++|. ..+++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp--~s~de 240 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP--TSNDD 240 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECCC--SSCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC--cccch
Confidence 334455555555444446778888883 35555
No 221
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.04 E-value=8.4e-07 Score=94.19 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=75.6
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh-----hcC-CeEEEEEecchhhHHHHH----------HHHHH--HHHHHHHHH--h
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS-----KAG-QKVSFYMRKGADVLSKWV----------GEAER--QLKLLFEEA--Q 474 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~-----~~~-~~~~~~~i~~~~l~~~~~----------g~~e~--~l~~lf~~a--~ 474 (1205)
.+|++|+||+|||++|.+++.... ..+ ..+-+..+++ +..... ..... ....++.-+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~g--L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKG--LKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTT--BCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCC--ccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 578999999999999988654432 223 2222222221 111000 00000 011222221 2
Q ss_pred hcCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCCCCc
Q 000974 475 RNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGC 554 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~ 554 (1205)
....+||||||++.+.+.+....+. . .++..+.... ...+.||.+|+.+..|+.+++. |+...+++..|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh--H----HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 3446799999999997655322111 1 2445555322 3345667777778999999988 9998899887655
Q ss_pred hhh
Q 000974 555 EAR 557 (1205)
Q Consensus 555 eer 557 (1205)
..+
T Consensus 156 ~~~ 158 (199)
T 2r2a_A 156 GMR 158 (199)
T ss_dssp CCE
T ss_pred Ccc
Confidence 444
No 222
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.03 E-value=2.4e-06 Score=99.42 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=73.9
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh-HHHHHHHHHHHHHHHHHHHhhcCCceEEEeccC
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-LSKWVGEAERQLKLLFEEAQRNQPSIIFFDEID 487 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l-~~~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid 487 (1205)
+++++..++|+||||+|||||+++|+..++ ..++.+....- ...+ +. ...+..++|+||++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~-----g~~~~~~~~~~~~~~~-------lg------~~~q~~~~l~dd~~ 226 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG-----GKALNVNLPLDRLNFE-------LG------VAIDQFLVVFEDVK 226 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC-----CEEECCSSCTTTHHHH-------HG------GGTTCSCEEETTCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC-----CcEEEEeccchhHHHH-------HH------HhcchhHHHHHHHH
Confidence 567778999999999999999999998763 22333332211 0111 11 11234578999999
Q ss_pred Cccc-ccchh-hhHHHHHHHHHHHHHhhCcccCCcEEEEccccccccccccccCCCCccccccCCC
Q 000974 488 GLAP-VRSSK-QEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL 551 (1205)
Q Consensus 488 ~L~~-~r~~~-~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~ 551 (1205)
.+.. .+.-. +... .....+...+++ .+.|++++|+++.+ +++.++++++..+++..
T Consensus 227 ~~~~~~r~l~~~~~~--~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 227 GTGGESRDLPSGQGI--NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CSTTTTTTCCCCSHH--HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhhccccCcc--hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 8875 22110 0110 022344555553 35677789999999 78999999988777655
No 223
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.03 E-value=4.9e-07 Score=106.09 Aligned_cols=134 Identities=18% Similarity=0.243 Sum_probs=84.9
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccC--------CC----CCCChhhHHHHhhccccccCCceeee
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS--------DP----SAKTPEEALVHIFGEARRTTPSILYI 770 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~--------~~----~~g~se~~~~~lf~~A~~~~p~ILfi 770 (1205)
.+||+|++||||+++|++|..... ..+|+.++++.+-. ++ +.|... ....+|..| ..++|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a---~~gtlfl 237 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELA---DGGTLFL 237 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHT---TTSEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeC---CCcEEEE
Confidence 489999999999999999988753 35788888765421 01 112111 111233333 3479999
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHh-----cCC----CCCeEEeccCCcCCccccCCCccccCCC-----ceeeecCCCcc
Q 000974 771 PQFNLWWENAHEQLRAVLLTLLEE-----LPS----HLPILLLGSSSVPLAEVEGDPSTVFPLR-----SVYQVEKPSTE 836 (1205)
Q Consensus 771 DEid~l~~~~~~~~~~~ll~lL~~-----~~~----~~~v~vIattn~~~~~Ld~~~~~~f~~r-----~ii~~~~P~~~ 836 (1205)
|||+.+....+.. |+..|+. +.+ ..++.||+|||.....+-. .+.|+.. .++.|..|...
T Consensus 238 dei~~l~~~~q~~----Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~--~g~fr~dl~~rl~~~~i~lPpLr 311 (387)
T 1ny5_A 238 DEIGELSLEAQAK----LLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK--EGKFREDLYYRLGVIEIEIPPLR 311 (387)
T ss_dssp ESGGGCCHHHHHH----HHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH--TTSSCHHHHHHHTTEEEECCCGG
T ss_pred cChhhCCHHHHHH----HHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH--cCCccHHHHHhhcCCeecCCcch
Confidence 9999998766665 5555554 211 2367799999986444332 4445421 57778999999
Q ss_pred chhhhHHHHHHH
Q 000974 837 DRSLFLGRLIEA 848 (1205)
Q Consensus 837 eR~~i~~~~l~~ 848 (1205)
+|..=+..++..
T Consensus 312 eR~~Di~~l~~~ 323 (387)
T 1ny5_A 312 ERKEDIIPLANH 323 (387)
T ss_dssp GCHHHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 987544444433
No 224
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.01 E-value=1.1e-06 Score=79.58 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=61.9
Q ss_pred CchhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhh
Q 000974 553 GCEARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHF 632 (1205)
Q Consensus 553 ~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df 632 (1205)
+.++|.+||+.+++++....+.+ +..||..|.||||+||.++|++|++.++++.. ..|+.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vd-l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~----------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVD-LEDYVARPDKISGADINSICQESGMLAVRENR----------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCC-THHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHHHH
Confidence 56899999999999887654444 48899999999999999999999999988642 35899999
Q ss_pred hhhhcccCcccc
Q 000974 633 IEAMSTITPAAH 644 (1205)
Q Consensus 633 ~~al~~i~ps~~ 644 (1205)
..++..+.|+..
T Consensus 65 ~~Al~~~~ps~~ 76 (83)
T 3aji_B 65 EKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHccCch
Confidence 999999988744
No 225
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.97 E-value=2.2e-05 Score=90.32 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=103.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCC-eEEEEEecchhhHHHHHHHHHHHHHHHHHHHh----hcCCceEEEecc
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQ-KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQ----RNQPSIIFFDEI 486 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~-~~~~~~i~~~~l~~~~~g~~e~~l~~lf~~a~----~~~p~VL~IDEi 486 (1205)
.+..+|||||+|+||++.++++++.+...+. ....+.+++. ..++.+++.+. .....|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 3457899999999999999999998754432 2233334432 11222332222 233569999999
Q ss_pred CC-cccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccc-----cccccccccCCCCccccccCCCCCchhhhhh
Q 000974 487 DG-LAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNR-----VDAIDGALRRPGRFDREFNFPLPGCEARAEI 560 (1205)
Q Consensus 487 d~-L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~-----~~~ld~aL~r~gRf~~~I~~~~P~~eer~~I 560 (1205)
|. +. ....+.|+..++... .+.++||++++. ...+.+++.+ |+ .++.|..++..+....
T Consensus 86 ~~kl~-----------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 86 ENGPN-----------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp SSCCC-----------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred CCCCC-----------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 98 63 234556777777432 233444444332 2346777777 65 5789999999999999
Q ss_pred hhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHH
Q 000974 561 LDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTE 598 (1205)
Q Consensus 561 l~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~e 598 (1205)
++..+...+..++.+.+..|+..+.| ++..+.++
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g----dl~~~~~e 184 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG----NLLALAQA 184 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT----CHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch----HHHHHHHH
Confidence 99999888888888888888877655 44444443
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=3.4e-06 Score=88.95 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=25.4
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
++..+++||+||||||||++|.+||+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456899999999999999999999984
No 227
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.96 E-value=1.4e-06 Score=102.39 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=83.7
Q ss_pred ceeee--ecCCCCCCCccchhhhhhcc--------cCccccCCCcccc-------------CCC--CCCCh-hhHHHHhh
Q 000974 704 PRLLL--CGSEGTGVDHLGPAILHELE--------KFPVHSLGLPALL-------------SDP--SAKTP-EEALVHIF 757 (1205)
Q Consensus 704 ~~lLl--~GppGtGKT~lA~ala~~l~--------~~~~~~l~~~~l~-------------~~~--~~g~s-e~~~~~lf 757 (1205)
..++| +|++|||||+|++++++.+. ++.++.+++.... ... ..|.+ ...+..+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 130 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALV 130 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 35888 99999999999999998753 2344554432110 000 01211 12222222
Q ss_pred cccc-ccCCceeeeccchhhHHh--HHHHHHHHHHHHHHhcCC-C--CCeEEeccCCcCCcc---cc---CCCccccCCC
Q 000974 758 GEAR-RTTPSILYIPQFNLWWEN--AHEQLRAVLLTLLEELPS-H--LPILLLGSSSVPLAE---VE---GDPSTVFPLR 825 (1205)
Q Consensus 758 ~~A~-~~~p~ILfiDEid~l~~~--~~~~~~~~ll~lL~~~~~-~--~~v~vIattn~~~~~---Ld---~~~~~~f~~r 825 (1205)
.... ...|.||+|||++.+... ....++..|+.++..+.. . .++.||+||+.+ .. ++ +.....+.
T Consensus 131 ~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~-~~~~~l~~~~~~~~~~~~-- 207 (412)
T 1w5s_A 131 DNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDV-RALSYMREKIPQVESQIG-- 207 (412)
T ss_dssp HHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEET-HHHHHHHHHCHHHHTTCS--
T ss_pred HHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccc-cHHHHHhhhcchhhhhcC--
Confidence 2222 235789999999988642 123444555566666541 3 678888888765 32 22 21112233
Q ss_pred ceeeecCCCccchhhhHHHHHHH
Q 000974 826 SVYQVEKPSTEDRSLFLGRLIEA 848 (1205)
Q Consensus 826 ~ii~~~~P~~~eR~~i~~~~l~~ 848 (1205)
..+.+++++.++...||+..+..
T Consensus 208 ~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 208 FKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeeeeCCCCHHHHHHHHHHHHHh
Confidence 23889999999999999887754
No 228
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.96 E-value=3.1e-06 Score=98.59 Aligned_cols=134 Identities=19% Similarity=0.181 Sum_probs=82.6
Q ss_pred eeeeecCCCCCCCccchhhhhhccc-CccccCCCccccCCC------------CCCChhhHHHHhhccccccCCceeeec
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLSDP------------SAKTPEEALVHIFGEARRTTPSILYIP 771 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~-~~~~~l~~~~l~~~~------------~~g~se~~~~~lf~~A~~~~p~ILfiD 771 (1205)
.+||.|++||||+++|++|...... -+|+.+++..+-... +.|... .-...|..| ..++||||
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a---~~gtlfld 229 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA---DQGTLFLD 229 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT---TTSEEEEE
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc---CCCeEEec
Confidence 4899999999999999999886522 237888776542110 111110 011233333 34689999
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhc-----CC----CCCeEEeccCCcCCccccCCCccccCC----C-ceeeecCCCccc
Q 000974 772 QFNLWWENAHEQLRAVLLTLLEEL-----PS----HLPILLLGSSSVPLAEVEGDPSTVFPL----R-SVYQVEKPSTED 837 (1205)
Q Consensus 772 Eid~l~~~~~~~~~~~ll~lL~~~-----~~----~~~v~vIattn~~~~~Ld~~~~~~f~~----r-~ii~~~~P~~~e 837 (1205)
||+.+....+.. |+..|+.- .+ ..++-||+|||..+..+-. .+.|+. | .++.|.+|...+
T Consensus 230 ei~~l~~~~Q~~----Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~--~g~fr~dL~~rl~~~~i~lPpLre 303 (368)
T 3dzd_A 230 EVGELDQRVQAK----LLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK--KGNFREDLYYRLSVFQIYLPPLRE 303 (368)
T ss_dssp TGGGSCHHHHHH----HHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH--TTSSCHHHHHHHTSEEEECCCGGG
T ss_pred ChhhCCHHHHHH----HHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH--cCCccHHHHHHhCCeEEeCCChhh
Confidence 999998766666 55555542 11 1256788999976444322 444442 2 677889999999
Q ss_pred hhhhHHHHHHH
Q 000974 838 RSLFLGRLIEA 848 (1205)
Q Consensus 838 R~~i~~~~l~~ 848 (1205)
|..=+..++..
T Consensus 304 R~~Di~~l~~~ 314 (368)
T 3dzd_A 304 RGKDVILLAEY 314 (368)
T ss_dssp STTHHHHHHHH
T ss_pred chhhHHHHHHH
Confidence 87554444443
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.89 E-value=5.2e-07 Score=102.54 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=55.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc---cCccccCCCccccC----CCCCCChhhHHHHhhccccccCCceeeeccchhh
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE---KFPVHSLGLPALLS----DPSAKTPEEALVHIFGEARRTTPSILYIPQFNLW 776 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~---~~~~~~l~~~~l~~----~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l 776 (1205)
.+++|+||||||||+||.+|++.+. +.+++.+..+.++. .+..|. +..++.... .+.||||||++..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGS----VKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC--------CCTTHHHH--TSSEEEEETCCC-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccch----HHHHHHHhc--CCCEEEEcCCCCC
Confidence 4799999999999999999999763 24555455444432 111111 112222222 3469999999664
Q ss_pred HHh--HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000974 777 WEN--AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 777 ~~~--~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
... ....++.. +|+..-. ....+|.|||.++..|..
T Consensus 227 ~~~~~~~~~ll~~---ll~~r~~-~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 227 QATSWVRDEVLQV---ILQYRML-EELPTFFTSNYSFADLER 264 (308)
T ss_dssp -----CTTTTHHH---HHHHHHH-HTCCEEEEESSCHHHHHT
T ss_pred CCCHHHHHHHHHH---HHHHHHH-CCCcEEEECCCCHHHHHH
Confidence 321 11122221 3322110 123467788988677665
No 230
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.89 E-value=3.9e-07 Score=96.51 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=55.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccCC----CCCCChhhHHHHhhccccccCCceeeeccchhhH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLSD----PSAKTPEEALVHIFGEARRTTPSILYIPQFNLWW 777 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~~----~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~ 777 (1205)
.+++|+||||||||++|+++++.+. +.+++.++.+.++.. +..+. +..++.... .+.+|||||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQT----MNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CC----CHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccch----HHHHHHHhc--CCCEEEEcCCCCCc
Confidence 4799999999999999999999763 344544544443221 10111 122222222 24699999997643
Q ss_pred Hh--HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccC
Q 000974 778 EN--AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEG 816 (1205)
Q Consensus 778 ~~--~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~ 816 (1205)
.. ....++. .+++.... ....+|+|||.++..|..
T Consensus 129 ~~~~~~~~ll~---~~l~~~~~-~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 129 MSSWVRDDVFG---PILQYRMF-ENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp --CCGGGTTHH---HHHHHHHH-TTCCEEEEESSCHHHHHH
T ss_pred CCHHHHHHHHH---HHHHHHHh-CCCCEEEEcCCCHHHHHH
Confidence 21 1222322 22322211 123466778876555543
No 231
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.76 E-value=5.5e-06 Score=74.86 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=46.7
Q ss_pred hhhhhhhhccccccCCCCchhHHHHHhhhhhcccchhHHHHhHHHHHHHHHHhCCceeccCCceEEeccceeeeehhhhh
Q 000974 555 EARAEILDIHTRKWKQPPSRELKSELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVTVEKYHFIE 634 (1205)
Q Consensus 555 eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~sgadI~~L~~eA~~~a~rr~~~~i~~~~~~~~~d~~~~~It~~df~~ 634 (1205)
++|.+||+.+++++....+.+ +..||..|.||||+||.++|++|++.++++.. ..|+.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vd-l~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEAD-LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCC-STTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------CCcCHHHHHH
Confidence 468899999999876544444 47899999999999999999999999999742 2589999999
Q ss_pred hhcccC
Q 000974 635 AMSTIT 640 (1205)
Q Consensus 635 al~~i~ 640 (1205)
++..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 999875
No 232
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.68 E-value=7.2e-06 Score=101.80 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.8
Q ss_pred eeeeecCCCCCCCccchhhhhhc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l 727 (1205)
.+||+||||||||++|++|+..+
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 69999999999999999999976
No 233
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.65 E-value=3.7e-05 Score=81.08 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=22.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE 728 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~ 728 (1205)
.++||+||||||||++|.+|++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999999874
No 234
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.64 E-value=0.00022 Score=74.20 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.8
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+.|+||+|+|||||++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998874
No 235
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=0.00014 Score=77.83 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.2
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
|+.+...++|+||+|+|||+|++.++..+...+..+.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 35566778999999999999999999776544445555543
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.51 E-value=0.00012 Score=84.46 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=53.0
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchh--hHHHHHH------------HHHHHHHHHHHHHh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGAD--VLSKWVG------------EAERQLKLLFEEAQ 474 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~--l~~~~~g------------~~e~~l~~lf~~a~ 474 (1205)
|+.+..-++|+||||+|||+|+..+|..+...+..+.|+...... .....+| ..+..+..+...+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 566777899999999999999999999887666556555433210 0101011 12222322222333
Q ss_pred hcCCceEEEeccCCccc
Q 000974 475 RNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~ 491 (1205)
...+.+++||.+..+++
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46788999999998886
No 237
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.51 E-value=3.9e-05 Score=84.48 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+.++|+||||||||||++|.+||+.+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 356899999999999999999999753
No 238
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.49 E-value=0.00054 Score=83.98 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=96.2
Q ss_pred CChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHh----hhhhcCCeEEEEEecch-----
Q 000974 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALAC----AASKAGQKVSFYMRKGA----- 452 (1205)
Q Consensus 382 ~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~----~l~~~~~~~~~~~i~~~----- 452 (1205)
+|.+..++.|.+++... +-...+.|.|+|+.|+|||+||+.+++ ........+.|+.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999998887431 012345788999999999999999996 34433344555555542
Q ss_pred -hhHHHHH---HHH-------------HHHHHHHHHHHhhcC-CceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhC
Q 000974 453 -DVLSKWV---GEA-------------ERQLKLLFEEAQRNQ-PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDG 514 (1205)
Q Consensus 453 -~l~~~~~---g~~-------------e~~l~~lf~~a~~~~-p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~ 514 (1205)
.++.... +.. ...+...+....... ..+|+||+++... .+ .+.. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~~-~-- 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWAQ-E-- 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHHH-H--
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--cccc-c--
Confidence 1111111 100 111233334443443 7899999997531 11 1111 1
Q ss_pred cccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCC-CCchhHHHHHhhhhhccc
Q 000974 515 LDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQ-PPSRELKSELAASCVGYC 588 (1205)
Q Consensus 515 ~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~-~~~~~~l~~LA~~t~G~s 588 (1205)
.+ ..||.||... .+...+. -....+.++..+.++-.++|..++..... ....++...|+..|.|+-
T Consensus 264 ---~g-s~ilvTTR~~-~v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ---LR-LRCLVTTRDV-EISNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ---TT-CEEEEEESBG-GGGGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ---CC-CEEEEEcCCH-HHHHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 22 3444455432 2211111 12245888889999999999887543321 111234466777777753
No 239
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.49 E-value=0.00012 Score=84.51 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=54.7
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch--hhHHHHHH------------HHHHHHHHHHHHHh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG------------EAERQLKLLFEEAQ 474 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~l~~~~~g------------~~e~~l~~lf~~a~ 474 (1205)
|+++..-++|+||||+|||+||..+|..+...+..+.|+..... ......+| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56677789999999999999999999887766666766654431 11111111 12222332333344
Q ss_pred hcCCceEEEeccCCccc
Q 000974 475 RNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~ 491 (1205)
...+.+||||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56689999999999874
No 240
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.45 E-value=0.00076 Score=83.21 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=92.0
Q ss_pred cccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhh---hhcC-CeEEEEEecch--
Q 000974 379 DDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAA---SKAG-QKVSFYMRKGA-- 452 (1205)
Q Consensus 379 ~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~-~~~~~~~i~~~-- 452 (1205)
..++|.+..++.|.+.+... -...+-|+|+||+|+|||+||..+++.. .... ..+.++.+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 45899999999999887531 0224568999999999999999998753 2222 13455554432
Q ss_pred -hhHHHHH------H-----------HHHHHHHHHHHHHhh-cCCceEEEeccCCcccccchhhhHHHHHHHHHHHHHhh
Q 000974 453 -DVLSKWV------G-----------EAERQLKLLFEEAQR-NQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMD 513 (1205)
Q Consensus 453 -~l~~~~~------g-----------~~e~~l~~lf~~a~~-~~p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld 513 (1205)
.++..+. + ........+...... ..+.+|+||+++... .+..
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----------------~l~~-- 253 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----------------VLKA-- 253 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----------------HHHT--
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----------------HHHH--
Confidence 1121111 0 001111122222222 257899999997420 1222
Q ss_pred CcccCCcEEEEccccccccccccccCCCCccccccCCCCCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000974 514 GLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 514 ~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
+. .++.||.||...... ..+. +....+..+...+.++..++|...+...... .......|+..|.|+.
T Consensus 254 -l~--~~~~ilvTsR~~~~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 254 -FD--SQCQILLTTRDKSVT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGSP 321 (591)
T ss_dssp -TC--SSCEEEEEESCGGGG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTCH
T ss_pred -hc--CCCeEEEECCCcHHH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCCc
Confidence 22 233455455443211 1111 1111111123568888888888766431111 1344577888888854
No 241
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.43 E-value=0.00022 Score=82.55 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=54.4
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch--hhHHHHHH------------HHHHHHHHHHHHHh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVG------------EAERQLKLLFEEAQ 474 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~l~~~~~g------------~~e~~l~~lf~~a~ 474 (1205)
|+++..-++|+||||+|||+||..+|..+...+..+.|+..... .+.....| ..+..+..+...+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56677789999999999999999999888766666777665432 11111111 12222222222333
Q ss_pred hcCCceEEEeccCCccc
Q 000974 475 RNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~ 491 (1205)
...+.+||||.+..|.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45688999999999985
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00035 Score=75.43 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=25.0
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
|+.+..-++|+||||+|||+|++.+|..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45667789999999999999999999853
No 243
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.35 E-value=1.8e-05 Score=83.95 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=66.1
Q ss_pred eeeeecCCCCCCCccchhhhhhc-------cc-CccccCCCccccCCCC------------CCC--hhhHHHHhhccccc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL-------EK-FPVHSLGLPALLSDPS------------AKT--PEEALVHIFGEARR 762 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l-------~~-~~~~~l~~~~l~~~~~------------~g~--se~~~~~lf~~A~~ 762 (1205)
-.||+|+||||||++|.+++... .+ .+++..+...|..+.. .++ ....+...+..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 57899999999999987764332 13 4444344443432221 111 0112222222222
Q ss_pred cCCceeeeccchhhHHhH--HHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCCCceeeecCCCccchh
Q 000974 763 TTPSILYIPQFNLWWENA--HEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPLRSVYQVEKPSTEDRS 839 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~--~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~r~ii~~~~P~~~eR~ 839 (1205)
..++||+|||++.+++.. ...... ++..|.... ...+-||.+|+.+ ..|+..+..+.. ..+++..|....+.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~r-ll~~l~~~r-~~~~~iil~tq~~-~~l~~~lr~ri~--~~~~l~~~~~~~~~ 159 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPE-NVQWLNTHR-HQGIDIFVLTQGP-KLLDQNLRTLVR--KHYHIASNKMGMRT 159 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCH-HHHGGGGTT-TTTCEEEEEESCG-GGBCHHHHTTEE--EEEEEEECSSCCEE
T ss_pred cCceEEEEEChhhhccCccccchhHH-HHHHHHhcC-cCCeEEEEECCCH-HHHhHHHHHHhh--eEEEEcCcccCcce
Confidence 347899999999996421 111111 333333322 3344445556655 777763222222 66667776665554
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.31 E-value=0.00033 Score=80.90 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=53.5
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch--hhHHHHHHH-----------HHHHHHHHHH-HHh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSKWVGE-----------AERQLKLLFE-EAQ 474 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~l~~~~~g~-----------~e~~l~~lf~-~a~ 474 (1205)
|+++...++|+|+||+|||+||..+|..+...+..+.|+..... ......+|. ....+..++. .+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46777789999999999999999999888766666666655321 111111110 1122222332 223
Q ss_pred hcCCceEEEeccCCccc
Q 000974 475 RNQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 475 ~~~p~VL~IDEid~L~~ 491 (1205)
...+.+|+||.+..|.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46688999999998875
No 245
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.23 E-value=0.00029 Score=84.42 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=37.0
Q ss_pred cccccccC-ChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhhhcCC
Q 000974 375 SVSFDDIG-GLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (1205)
Q Consensus 375 ~~~~~~i~-Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (1205)
..+|++|- ++..++..+...+.. ....++|.|+||||||+++.+++..+...+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 35666664 555555555443322 1237999999999999999999999876664
No 246
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.17 E-value=0.00084 Score=72.74 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.1
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACA 436 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~ 436 (1205)
|+.+..-++|+||+|+|||||++.++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566778999999999999999999843
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.13 E-value=0.0006 Score=77.78 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=51.9
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhc------CCeEEEEEecch---hhHHHH---HH----------------
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA------GQKVSFYMRKGA---DVLSKW---VG---------------- 460 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~------~~~~~~~~i~~~---~l~~~~---~g---------------- 460 (1205)
|+++..-++|+||||+|||++|..+|..+... +..+.|+..... .-+..+ +|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56777789999999999999999999876433 445556554432 111111 00
Q ss_pred HHH---HHHHHHHHHHhh-cCCceEEEeccCCccc
Q 000974 461 EAE---RQLKLLFEEAQR-NQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 461 ~~e---~~l~~lf~~a~~-~~p~VL~IDEid~L~~ 491 (1205)
..+ ..+..+...+.. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 122333344444 6688999999998863
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.12 E-value=0.00069 Score=71.93 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=29.6
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
|+.+..-++|+||||+|||+|+..+|. ..+..+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 456677899999999999999999998 234455555443
No 249
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.10 E-value=0.00029 Score=80.44 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=74.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccc--------------------------------cCCCC------C
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPAL--------------------------------LSDPS------A 746 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l--------------------------------~~~~~------~ 746 (1205)
.++|+|++|+|||+|++.+++.+ ...++.+++... +.... .
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL-NLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred cEEEECCCCCCHHHHHHHHHHhc-CCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 58999999999999999999875 223333332211 00000 0
Q ss_pred C-C------hhhHHHHhhcccccc--CCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC--ccc-
Q 000974 747 K-T------PEEALVHIFGEARRT--TPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEV- 814 (1205)
Q Consensus 747 g-~------se~~~~~lf~~A~~~--~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~--~~L- 814 (1205)
+ . ....+..++...... .|.||+|||++.+.......+...|..+++... ++.||.|+.... ..+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~g~~~~~l~~~l 187 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK---RIKFIMSGSEMGLLYDYL 187 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT---TEEEEEEESSHHHHHHHT
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCC---CeEEEEEcCchHHHHHHH
Confidence 0 0 011233333332221 389999999998764212233444444455432 455555554320 111
Q ss_pred --cCCCccccCCC--ceeeecCCCccchhhhHHHHHH
Q 000974 815 --EGDPSTVFPLR--SVYQVEKPSTEDRSLFLGRLIE 847 (1205)
Q Consensus 815 --d~~~~~~f~~r--~ii~~~~P~~~eR~~i~~~~l~ 847 (1205)
......++ ++ ..+.+.+.+.++..+++...+.
T Consensus 188 ~~~~~~~~l~-~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 188 RVEDPESPLF-GRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TTTCTTSTTT-TCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred hccCCCCccc-cCccceeecCCCCHHHHHHHHHHHHH
Confidence 11111222 22 5678899999999888887664
No 250
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.10 E-value=0.0022 Score=85.75 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=96.3
Q ss_pred ccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhhhh---h-cCCeEEEEEecchh
Q 000974 378 FDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAAS---K-AGQKVSFYMRKGAD 453 (1205)
Q Consensus 378 ~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~-~~~~~~~~~i~~~~ 453 (1205)
...++|++..++.|.+.+... -...+-|.|+|+.|+|||+||+.+++... . ....+-++.+....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 345899999999999887431 02245688999999999999999987742 1 11234455544411
Q ss_pred ---hHHHH------HH----------HHHHHHHHHHHHHhhcC--CceEEEeccCCcccccchhhhHHHHHHHHHHHHHh
Q 000974 454 ---VLSKW------VG----------EAERQLKLLFEEAQRNQ--PSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALM 512 (1205)
Q Consensus 454 ---l~~~~------~g----------~~e~~l~~lf~~a~~~~--p~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~l 512 (1205)
+.... ++ .....+...+....... +.+|+||+++... .+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HH
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HH
Confidence 11000 00 01122222333333333 7899999997431 12
Q ss_pred hCcccCCcEEEEccccccccccccccCCCCccccccCCC-CCchhhhhhhhccccccCCCCchhHHHHHhhhhhccc
Q 000974 513 DGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPL-PGCEARAEILDIHTRKWKQPPSRELKSELAASCVGYC 588 (1205)
Q Consensus 513 d~~~~~~~viVI~atn~~~~ld~aL~r~gRf~~~I~~~~-P~~eer~~Il~~~l~~~~~~~~~~~l~~LA~~t~G~s 588 (1205)
..+. .+..||.||....... .+. .....+.++. .+.++-.++|..++....... .+...+|++.+.|+-
T Consensus 252 ~~~~--~~~~ilvTtR~~~~~~-~~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~-~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 252 KAFD--NQCQILLTTRDKSVTD-SVM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDL-PAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTTC--SSCEEEEEESSTTTTT-TCC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTC-CTHHHHHHHHTTTCH
T ss_pred Hhhc--CCCEEEEEcCCHHHHH-hhc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhC-cHHHHHHHHHhCCCH
Confidence 2222 2234555665432211 111 1234566775 788888888887664332222 334577888888864
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.00085 Score=77.17 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=50.4
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhh------cCCeEEEEEecch---hhHHHHH--------------------
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASK------AGQKVSFYMRKGA---DVLSKWV-------------------- 459 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~------~~~~~~~~~i~~~---~l~~~~~-------------------- 459 (1205)
|+++..-++|+||||+|||+||..+|..+.. .+..+.|+..... .-+..+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 4566677899999999999999999987533 2345555554432 1111110
Q ss_pred --HHHHHHHHHHHHHHhh--cCCceEEEeccCCccc
Q 000974 460 --GEAERQLKLLFEEAQR--NQPSIIFFDEIDGLAP 491 (1205)
Q Consensus 460 --g~~e~~l~~lf~~a~~--~~p~VL~IDEid~L~~ 491 (1205)
.+....+..+...+.. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 0111122223333444 5678999999998863
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.002 Score=69.59 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=31.9
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
|+.+..-++|+||||+|||+++..+|..+...+..+.++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 556677899999999999999998887765555556555443
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.03 E-value=0.00023 Score=74.05 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.9
Q ss_pred eeeeecCCCCCCCccchhhhhhc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l 727 (1205)
.+.|+||+|+|||+|+++|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.98 E-value=0.0011 Score=74.62 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=48.8
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhc--CCeEEEEEecchh--hHHHHHH------------HHHHHHHHHHHH
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA--GQKVSFYMRKGAD--VLSKWVG------------EAERQLKLLFEE 472 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~--~~~~~~~~i~~~~--l~~~~~g------------~~e~~l~~lf~~ 472 (1205)
|+++. -++|+||||+|||+|+-.++..+... +..+.|+....+- ....-+| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999988887776654 4445444322210 0011111 122220122222
Q ss_pred ---HhhcCCceEEEeccCCcccc
Q 000974 473 ---AQRNQPSIIFFDEIDGLAPV 492 (1205)
Q Consensus 473 ---a~~~~p~VL~IDEid~L~~~ 492 (1205)
+....|.+|+||-|..|.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 34567999999999999853
No 255
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.91 E-value=0.00055 Score=84.15 Aligned_cols=36 Identities=39% Similarity=0.529 Sum_probs=29.8
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEe
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMR 449 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i 449 (1205)
..++|+||||||||+++.+++..+...+..+.+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 568999999999999999999988777766655443
No 256
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.91 E-value=0.0014 Score=70.03 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=24.9
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
|+.+..-+.|+||+|+|||||++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666779999999999999999999754
No 257
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.90 E-value=0.00051 Score=78.25 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=45.0
Q ss_pred CCceeeeccchhhHH---hHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC--ccc---cCCCccccCC-CceeeecCCC
Q 000974 764 TPSILYIPQFNLWWE---NAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL--AEV---EGDPSTVFPL-RSVYQVEKPS 834 (1205)
Q Consensus 764 ~p~ILfiDEid~l~~---~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~--~~L---d~~~~~~f~~-r~ii~~~~P~ 834 (1205)
.|.||+|||++.+.. .....+...|..+++... ++.||.|+.... ..+ ......++.. ...+.+.+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~---~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~ 204 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLP---NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFD 204 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCT---TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCC
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcC---CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCC
Confidence 489999999998764 122344555555665542 454444443220 111 1111122211 1467788888
Q ss_pred ccchhhhHHHHHH
Q 000974 835 TEDRSLFLGRLIE 847 (1205)
Q Consensus 835 ~~eR~~i~~~~l~ 847 (1205)
.++-.+++...+.
T Consensus 205 ~~e~~~~l~~~~~ 217 (350)
T 2qen_A 205 KDTSVEFLKRGFR 217 (350)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876553
No 258
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.83 E-value=0.0013 Score=76.91 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=23.8
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACA 436 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~ 436 (1205)
|+.+..-++|+||||||||+|++.+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5677778999999999999999977643
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.81 E-value=0.0032 Score=74.33 Aligned_cols=78 Identities=24% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh-----HHHH-------------HHHHHHHHHHHHHHH
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKW-------------VGEAERQLKLLFEEA 473 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l-----~~~~-------------~g~~e~~l~~lf~~a 473 (1205)
++.-|+|+|++|+||||++..||..+...+.++.++..+.... +..| .......+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4677899999999999999999999988887777665443110 0000 012334455667777
Q ss_pred hhcCCceEEEeccCCc
Q 000974 474 QRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 474 ~~~~p~VL~IDEid~L 489 (1205)
......++|||-.-.+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7766789999987443
No 260
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.79 E-value=0.0055 Score=64.27 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=32.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
..|++|+++|.|||++|-++|..+...|.++-|+...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 4689999999999999999999998888888887543
No 261
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.76 E-value=0.0025 Score=76.14 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=33.8
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhh-cCCeEEEEEec
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~ 450 (1205)
|+.+..-++|.|+||+|||+++..+|..+.. .+..+.|+...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 5677778999999999999999999988764 35567676544
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.75 E-value=0.0013 Score=68.57 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
.-++++||+|+|||+++..++..+...+..+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3478999999999999977776665555554443
No 263
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.65 E-value=0.0076 Score=66.87 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.2
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASK 439 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~ 439 (1205)
|+....-++|+||+|+|||+|+..++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4566678999999999999999999986643
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.62 E-value=0.011 Score=69.68 Aligned_cols=78 Identities=27% Similarity=0.247 Sum_probs=51.6
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh-----HHHH---HH----------HHHHHHHHHHHHH
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKW---VG----------EAERQLKLLFEEA 473 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l-----~~~~---~g----------~~e~~l~~lf~~a 473 (1205)
++.-++|+||+|+||||++..||..+...+.++.++..+.... +..+ .| .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4567899999999999999999999988887777766553211 1100 00 1122233445555
Q ss_pred hhcCCceEEEeccCCc
Q 000974 474 QRNQPSIIFFDEIDGL 489 (1205)
Q Consensus 474 ~~~~p~VL~IDEid~L 489 (1205)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5556789999988543
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.56 E-value=0.0042 Score=71.51 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=26.7
Q ss_pred cccCCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 408 YHITPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+++..-+.|+||+|+|||+|++.++..+.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567777899999999999999999998763
No 266
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.53 E-value=0.0027 Score=72.19 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.1
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
|+++..-++|+||||+|||++|..+|..+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999999998764
No 267
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.52 E-value=0.0046 Score=74.93 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=47.1
Q ss_pred ceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc--cccccccCCCCccccccCCCCCchh
Q 000974 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--AIDGALRRPGRFDREFNFPLPGCEA 556 (1205)
Q Consensus 479 ~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~--~ld~aL~r~gRf~~~I~~~~P~~ee 556 (1205)
.||+|||++.|+.... ..+...|..++.. ...-++.+|.+|.+|. .|+..++. -|...|.|...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~-GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQK-ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHH-CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHH-HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 5899999998864211 1122222222222 2344677888888876 67777766 577777788777777
Q ss_pred hhhhhh
Q 000974 557 RAEILD 562 (1205)
Q Consensus 557 r~~Il~ 562 (1205)
...||.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 777764
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.51 E-value=0.00074 Score=74.60 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=44.9
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecchh-------hHH-HHHHHHHHHHHHHHHHHhhcCCceE
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGAD-------VLS-KWVGEAERQLKLLFEEAQRNQPSII 481 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~-------l~~-~~~g~~e~~l~~lf~~a~~~~p~VL 481 (1205)
.+...++|+||+|+||||++++++..+... ...+.+....... ++. ..+|.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 445578999999999999999999887543 2233332211100 000 0001001123455566666689999
Q ss_pred EEecc
Q 000974 482 FFDEI 486 (1205)
Q Consensus 482 ~IDEi 486 (1205)
++||.
T Consensus 103 llDEp 107 (261)
T 2eyu_A 103 FVGEM 107 (261)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 99998
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.51 E-value=0.0029 Score=64.79 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.0
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..|+|+|+||+||||++++|+..++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999885
No 270
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.50 E-value=0.00028 Score=62.85 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=45.7
Q ss_pred cCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 831 EKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 831 ~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
++|+.++|.+||+.++.+. +...++++..|+.. +.||||+||.++| ++.+.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~----------~~~~~~dl~~la~~---t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM----------NLTRGINLRKIAEL---MPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS----------EECTTCCHHHHHHT---CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCC----------CCCCccCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999998652 22356778888877 8899999999999 888888766
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.49 E-value=0.0084 Score=67.03 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.4
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEE
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYM 448 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~ 448 (1205)
++.+..-++|.||||+|||+|++.+|..+... +..+.++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45667789999999999999999999887644 44555554
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.47 E-value=0.002 Score=74.40 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=44.3
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecchhh--------HH-HHHHHHHHHHHHHHHHHhhcCCceEE
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADV--------LS-KWVGEAERQLKLLFEEAQRNQPSIIF 482 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~l--------~~-~~~g~~e~~l~~lf~~a~~~~p~VL~ 482 (1205)
...++|+||+|+||||++++++..+... +..+..+. +..++ +. ..++.....+...+..+....|.||+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 3468999999999999999999988654 22222211 11110 00 00111111223366677778899999
Q ss_pred Eecc
Q 000974 483 FDEI 486 (1205)
Q Consensus 483 IDEi 486 (1205)
+||+
T Consensus 202 lDEp 205 (356)
T 3jvv_A 202 VGEM 205 (356)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 9998
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.41 E-value=0.00074 Score=71.67 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=19.4
Q ss_pred eeeeecCCCCCCCccchhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILH 725 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~ 725 (1205)
-++|+|+||+|||+++..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 274
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.40 E-value=0.00041 Score=63.08 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=48.0
Q ss_pred eeecCCCccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 828 YQVEKPSTEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 828 i~~~~P~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
.+-.+|+.++|.+||+.++.+. +...++++..|+.. +.||||+||.++| +|.+.++++
T Consensus 6 ~~~~~Pd~~~R~~IL~~~l~~~----------~l~~dvdl~~LA~~---T~G~SGADL~~l~~eAa~~alr~ 64 (86)
T 2krk_A 6 HHHSHPNEEARLDILKIHSRKM----------NLTRGINLRKIAEL---MPGASGAEVKGVCTEAGMYALRE 64 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTS----------EECTTCCCHHHHHT---CSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHcCC----------CCCcccCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999652 23456888888877 8899999999999 888888876
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.40 E-value=0.011 Score=66.74 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=48.8
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh-----HHHHHH-------------HHHHHHHHHHHH
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKWVG-------------EAERQLKLLFEE 472 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l-----~~~~~g-------------~~e~~l~~lf~~ 472 (1205)
.++.-++|+||+|+||||++..||..+...+..+.++..+.... +..|.. +....+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 45667899999999999999999999877666676655443210 111110 111122223444
Q ss_pred HhhcCCceEEEeccC
Q 000974 473 AQRNQPSIIFFDEID 487 (1205)
Q Consensus 473 a~~~~p~VL~IDEid 487 (1205)
+....+.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 455677899999874
No 276
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.39 E-value=0.0031 Score=67.81 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=45.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc--h---hhHHHHHHHH-----HHHHHHHHHHHhh----cCCc
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG--A---DVLSKWVGEA-----ERQLKLLFEEAQR----NQPS 479 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~--~---~l~~~~~g~~-----e~~l~~lf~~a~~----~~p~ 479 (1205)
.-++++||+|+||||++..++..+...+..+-++.... . .+.+. .|-. -.....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 45778899999999999999988877776666552111 1 11111 1100 0011234444433 3478
Q ss_pred eEEEeccCCc
Q 000974 480 IIFFDEIDGL 489 (1205)
Q Consensus 480 VL~IDEid~L 489 (1205)
+|+|||+..|
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999866
No 277
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.39 E-value=0.0055 Score=73.66 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=44.0
Q ss_pred ceEEEeccCCcccccchhhhHHHHHHHHHHHHHhhCcccCCcEEEEccccccc--cccccccCCCCccccccCCCCCchh
Q 000974 479 SIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVD--AIDGALRRPGRFDREFNFPLPGCEA 556 (1205)
Q Consensus 479 ~VL~IDEid~L~~~r~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~--~ld~aL~r~gRf~~~I~~~~P~~ee 556 (1205)
.||+|||+..++... ...+. .++..+-.....-.+.+|.+|.+|. .++..++. .|...|.|...+..+
T Consensus 299 ivlvIDE~~~ll~~~-------~~~~~-~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-------GKKVE-ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEEETHHHHHHHH-------HHHHH-HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred EEEEEeCHHHHHhhh-------hHHHH-HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 389999998776310 11122 2222221112233567777787776 46666655 566777777777777
Q ss_pred hhhhhhc
Q 000974 557 RAEILDI 563 (1205)
Q Consensus 557 r~~Il~~ 563 (1205)
...|+..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 7777643
No 278
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.38 E-value=0.0045 Score=68.42 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4556678899999999999999999765
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.37 E-value=0.00095 Score=68.61 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.4
Q ss_pred cCCCcceeeecCCCChhHHHHHH
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~lara 432 (1205)
+..+.-+.|+||+|+|||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34556789999999999999994
No 280
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.37 E-value=0.0059 Score=72.67 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=33.5
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhh-cCCeEEEEEec
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~ 450 (1205)
|+.+..-++|+|+||+|||++|..+|..+.. .+..+-|+.+.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5677778999999999999999999988764 35566666554
No 281
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.33 E-value=0.0038 Score=66.90 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=33.8
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
.+|++.|+||||||+++-.+|..+...|..+.++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 46999999999999999999999988888888877764
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.32 E-value=0.026 Score=63.83 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=33.8
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
|+.+..-++|.|+||+|||+++..+|..+...+..+-|+.+.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 567777899999999999999999998776666566666543
No 283
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.25 E-value=0.0014 Score=74.36 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=55.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHH
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQ 783 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~ 783 (1205)
+.++|+||+|||||+||..||..+ +..++.+|.-.+..+..+|+....... ....|. .|||..+-........
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~qvy~~~~igTakp~~~e-----~~gvph-~lid~~~~~~~~~~~~ 78 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSALIYRGMDIGTAKPSREL-----LARYPH-RLIDIRDPAESYSAAE 78 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTTTBTTCCTTTTCCCHHH-----HHHSCE-ETSSCBCTTSCCCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchhhhcCCCcccCCCCHHH-----HcCCCE-EEeeccCcccccCHHH
Confidence 358899999999999999999998 677888776555555444442211111 122233 4555544332111123
Q ss_pred HHHHHHHHHHhcC-CCCCeEEeccCC
Q 000974 784 LRAVLLTLLEELP-SHLPILLLGSSS 808 (1205)
Q Consensus 784 ~~~~ll~lL~~~~-~~~~v~vIattn 808 (1205)
+.......+..+. .+..+++++.|.
T Consensus 79 F~~~a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 79 FRADALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCch
Confidence 3333344444442 344556666665
No 284
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.21 E-value=0.011 Score=63.62 Aligned_cols=41 Identities=32% Similarity=0.354 Sum_probs=30.1
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhh-hhhcCCeEEEEEe
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACA-ASKAGQKVSFYMR 449 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~-l~~~~~~~~~~~i 449 (1205)
|+++..-++|+|+||+|||++|..+|.. +...+..+.++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5677778999999999999999887654 3333445555543
No 285
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.19 E-value=0.00085 Score=72.38 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=19.9
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-++|+||||+|||+++..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999874
No 286
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.16 E-value=0.0099 Score=64.43 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.7
Q ss_pred ceeeecCCCChhHHHHHHHHhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (1205)
.++|+||+|+|||.++.+++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999999888776
No 287
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.12 E-value=0.0025 Score=74.01 Aligned_cols=91 Identities=12% Similarity=-0.023 Sum_probs=53.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHh----
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWEN---- 779 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~---- 779 (1205)
..++|+||||+|||+++++|+..+. ..++.+..+.. .....+..+| ..+++|+|+++.+...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~-g~~~~~~~~~~-------~~~~~lg~~~------q~~~~l~dd~~~~~~~~r~l 235 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCG-GKALNVNLPLD-------RLNFELGVAI------DQFLVVFEDVKGTGGESRDL 235 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC-CEEECCSSCTT-------THHHHHGGGT------TCSCEEETTCCCSTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC-CcEEEEeccch-------hHHHHHHHhc------chhHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999773 33333322110 0111233333 2367899999987641
Q ss_pred ---HHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccc
Q 000974 780 ---AHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEV 814 (1205)
Q Consensus 780 ---~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~L 814 (1205)
........+...|++ .+.|+++||++ +.+
T Consensus 236 ~~~~~~~~~~~l~~~ldG-----~v~v~~~tn~~-~~l 267 (377)
T 1svm_A 236 PSGQGINNLDNLRDYLDG-----SVKVNLEKKHL-NKR 267 (377)
T ss_dssp CCCSHHHHHHTTHHHHHC-----SSCEEECCSSS-CCE
T ss_pred cccCcchHHHHHHHHhcC-----CCeEeeccCch-hhH
Confidence 000012334444443 35577889988 666
No 288
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.12 E-value=0.0014 Score=76.25 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=45.6
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecch-------hhHHH-HHHHHHHHHHHHHHHHhhcCCce
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGA-------DVLSK-WVGEAERQLKLLFEEAQRNQPSI 480 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~-------~l~~~-~~g~~e~~l~~lf~~a~~~~p~V 480 (1205)
+.+...++|+||+|+||||++++|+..+... ...+.++.-... .++.. .+|.....+...+..+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 4555678999999999999999999987543 223322221100 00000 00101112244555666678999
Q ss_pred EEEecc
Q 000974 481 IFFDEI 486 (1205)
Q Consensus 481 L~IDEi 486 (1205)
|++||+
T Consensus 213 illdE~ 218 (372)
T 2ewv_A 213 IFVGEM 218 (372)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999998
No 289
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.12 E-value=0.018 Score=60.14 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.4
Q ss_pred CcceeeecCCCChhHHHHHH
Q 000974 413 PRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~lara 432 (1205)
.+++++++|+|+|||+++-.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999987443
No 290
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.06 E-value=0.0045 Score=64.80 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.7
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999998874
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.05 E-value=0.0026 Score=66.88 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+...|+|+||+||||||++++||..++
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4556899999999999999999999985
No 292
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.00 E-value=0.017 Score=73.53 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=34.5
Q ss_pred ccccccCChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhh
Q 000974 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 436 (1205)
..|++++-.....+.+...-.+|......--...+.....++++||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3466655445555555554444432111100011233457999999999999977777544
No 293
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.95 E-value=0.00066 Score=79.98 Aligned_cols=96 Identities=13% Similarity=-0.051 Sum_probs=53.7
Q ss_pred eeeeecCCCCCCCccchhh-hhhcccCccccCCCc---cccCCCC--CCChhhHHHHhhccccccCCceeeeccchhhHH
Q 000974 705 RLLLCGSEGTGVDHLGPAI-LHELEKFPVHSLGLP---ALLSDPS--AKTPEEALVHIFGEARRTTPSILYIPQFNLWWE 778 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~al-a~~l~~~~~~~l~~~---~l~~~~~--~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~ 778 (1205)
++||.|+||| ||++|+++ ++.++...|....++ .|..... .| ..- -...+..| ..+|||||||+.+..
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG-~~~-~~G~l~LA---dgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRG-WAL-RAGAAVLA---DGGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSS-EEE-EECHHHHT---TTSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCC-ccc-CCCeeEEc---CCCeeehHhhhhCCH
Confidence 6999999999 99999999 766533222111111 0110000 11 000 00111122 247999999999765
Q ss_pred hHHHHHHHHHHHHHHhc----C---CCCCeEEeccCCcC
Q 000974 779 NAHEQLRAVLLTLLEEL----P---SHLPILLLGSSSVP 810 (1205)
Q Consensus 779 ~~~~~~~~~ll~lL~~~----~---~~~~v~vIattn~~ 810 (1205)
... ..|+..|++- . -..++.||||+|..
T Consensus 315 ~~q----saLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 315 PHR----WALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp HHH----HHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred HHH----HHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 444 4466666641 1 12478899999965
No 294
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.93 E-value=0.0031 Score=72.54 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=57.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcc--cCccccCCCccccC------------C---CCCCChhhHHHHhhccccccCCce
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLPALLS------------D---PSAKTPEEALVHIFGEARRTTPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~~l~~------------~---~~~g~se~~~~~lf~~A~~~~p~I 767 (1205)
-++|+||||+|||+|+..++..+. +..++.++....+. . ......+..+..+...++...+.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 478999999999999999887641 22333333222110 0 001223333333333333467899
Q ss_pred eeeccchhhHHh-------------HHHHHHHHHHHHHHhcCCCCCeEEec
Q 000974 768 LYIPQFNLWWEN-------------AHEQLRAVLLTLLEELPSHLPILLLG 805 (1205)
Q Consensus 768 LfiDEid~l~~~-------------~~~~~~~~ll~lL~~~~~~~~v~vIa 805 (1205)
|+||.+..+.+. ...+.+..++..|..+....++.||.
T Consensus 143 vVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~ 193 (356)
T 3hr8_A 143 IVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIF 193 (356)
T ss_dssp EEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEE
T ss_pred EEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999988741 12345555666666664444555554
No 295
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.92 E-value=0.025 Score=63.48 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhh-cCCeEEEEEecc
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASK-AGQKVSFYMRKG 451 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~-~~~~~~~~~i~~ 451 (1205)
.+..++|+||+|+||||++..||..+.. .|..+.++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4567899999999999999999999874 676777766554
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.90 E-value=0.009 Score=68.83 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|+|||||+++|+..+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4555668899999999999999998765
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.89 E-value=0.0031 Score=65.10 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.8
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|++||||||+++.||..++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999885
No 298
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.87 E-value=0.0075 Score=64.53 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=30.7
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHH
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSK 457 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~ 457 (1205)
..++-|+|.||||+||+|.|+.||+.++ +..++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g-------~~hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH-------FNHLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC-------CEEECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC-------CceEcHHHHHHH
Confidence 4456788999999999999999999884 344555566543
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.86 E-value=0.0046 Score=63.84 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.3
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
..|+|+|+||+||||+++.|+..++..+....++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 4689999999999999999999987555334444
No 300
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.85 E-value=0.0097 Score=64.50 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=24.3
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.+.+...+.|.||+|+|||||+++|+..+
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34556678999999999999999998765
No 301
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.85 E-value=0.012 Score=65.24 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4455668899999999999999998765
No 302
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.83 E-value=0.018 Score=69.57 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=34.7
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecc
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKG 451 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~ 451 (1205)
|+.+..-++|.|+||+|||+++..+|..+... +..+.|+.+..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 56777789999999999999999999888765 66677766543
No 303
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.82 E-value=0.012 Score=65.83 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..+..|+|+||||+||||+++.|+..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999998773
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.82 E-value=0.0051 Score=63.52 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=27.5
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
.|+|.|+||+||||+++.|+..++..+..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 489999999999999999999997655545544
No 305
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.82 E-value=0.016 Score=63.56 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555678899999999999999999765
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.78 E-value=0.0042 Score=64.39 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=24.7
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..+..|+|+|+||+||||+++.|+..++
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456799999999999999999999884
No 307
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.77 E-value=0.026 Score=59.92 Aligned_cols=53 Identities=25% Similarity=0.198 Sum_probs=31.4
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHH
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIA 430 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~la 430 (1205)
..+|+++.=.+..++.|...-.. .+.-++... +-..+++++++|+|+|||.++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFE---EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCC---CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 35688876556666666654211 111122111 123467999999999999873
No 308
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.76 E-value=0.007 Score=70.12 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||+++||...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3455568899999999999999999875
No 309
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.76 E-value=0.054 Score=64.31 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=34.5
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
|+.+..-++|.|+||+|||++|-.+|..+...+..+-|+.+.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 577777899999999999999999998887666667776544
No 310
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.72 E-value=0.026 Score=64.37 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
|+.+..-++|.|+||+|||+++..+|..+...+..+.|+.+..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5677778999999999999999999988877676777776543
No 311
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.70 E-value=0.0032 Score=71.90 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=46.1
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh--HHH---HHHHHHHHHHHHHHHHhhcCCceEEEec
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV--LSK---WVGEAERQLKLLFEEAQRNQPSIIFFDE 485 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l--~~~---~~g~~e~~l~~lf~~a~~~~p~VL~IDE 485 (1205)
.+...++|+||+|+|||||+++|+..+......+.+-......+ ... ++.......+..+..+....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 34567999999999999999999988743322222211000000 000 1100122345556667778899999999
Q ss_pred cC
Q 000974 486 ID 487 (1205)
Q Consensus 486 id 487 (1205)
+-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 312
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.62 E-value=0.0066 Score=63.56 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred eeeeecCCCCCCCccchhhhhhc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l 727 (1205)
.+.|+|++|+|||++.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.60 E-value=0.018 Score=64.79 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=25.0
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.+.+...+.|+||+|+|||||+++|+..+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34666789999999999999999998765
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.59 E-value=0.0064 Score=62.51 Aligned_cols=26 Identities=38% Similarity=0.684 Sum_probs=23.7
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+||+||||++++|+..++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999884
No 315
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.069 Score=70.45 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=20.9
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcC
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAG 441 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~ 441 (1205)
..+|++||+|+|||+++-..+......+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g 227 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNK 227 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 5799999999999998765554443333
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.57 E-value=0.0074 Score=62.52 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=23.2
Q ss_pred CcceeeecCCCChhHHHHHHHHhh-hh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACA-AS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~-l~ 438 (1205)
+..|+|+|+|||||||+++.||.. ++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999998 54
No 317
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.57 E-value=0.0062 Score=70.45 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=42.5
Q ss_pred eeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccC-------CC--------CCCChhhHHHHhhccccccCCce
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS-------DP--------SAKTPEEALVHIFGEARRTTPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~-------~~--------~~g~se~~~~~lf~~A~~~~p~I 767 (1205)
-++|+|+||+|||++|..++..+ .+.+++.++...-+. +. .....+..+..+...++...+++
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 48899999999999998887653 122333333221110 00 01122333333333334467899
Q ss_pred eeeccchhhH
Q 000974 768 LYIPQFNLWW 777 (1205)
Q Consensus 768 LfiDEid~l~ 777 (1205)
|+||.+..|.
T Consensus 156 VVIDsl~~l~ 165 (366)
T 1xp8_A 156 VVVDSVAALT 165 (366)
T ss_dssp EEEECTTTCC
T ss_pred EEEeChHHhc
Confidence 9999999987
No 318
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.54 E-value=0.073 Score=57.23 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.1
Q ss_pred CcceeeecCCCChhHHHHHHHH
Q 000974 413 PRGVLLCGPPGTGKTLIARALA 434 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA 434 (1205)
...++++||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999998766554
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.52 E-value=0.0084 Score=65.70 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.1
Q ss_pred eeeecCCCCCCCccchhhhhhcccCccccCCC
Q 000974 706 LLLCGSEGTGVDHLGPAILHELEKFPVHSLGL 737 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~ 737 (1205)
++|+||||||||++|++||..+ +..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~-~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET-GWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-CCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcC-CCeEEeccH
Confidence 7899999999999999999988 677777664
No 320
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.52 E-value=0.034 Score=59.60 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=33.9
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHHH
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lara 432 (1205)
+..+|++++-.....+.|.+.-.. .+.-++... +...+++++++|+|+|||+.+-.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~---~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYR---LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCC---BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHH
Confidence 445788887666677777654211 122222211 12346899999999999986443
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.51 E-value=0.012 Score=67.79 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||+++||...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3455568899999999999999999765
No 322
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.50 E-value=0.0035 Score=72.09 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=42.6
Q ss_pred eeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccC-------CC--------CCCChhhHHHHhhccccccCCce
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS-------DP--------SAKTPEEALVHIFGEARRTTPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~-------~~--------~~g~se~~~~~lf~~A~~~~p~I 767 (1205)
-++|+|+||+|||+||..++..+ .+..++.++...-+. ++ .....++.+..+...++...|.+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 48899999999999998888653 122222222211110 00 00122333333333444567999
Q ss_pred eeeccchhhH
Q 000974 768 LYIPQFNLWW 777 (1205)
Q Consensus 768 LfiDEid~l~ 777 (1205)
|+||++..+.
T Consensus 143 IVIDsl~~l~ 152 (349)
T 2zr9_A 143 IVIDSVAALV 152 (349)
T ss_dssp EEEECGGGCC
T ss_pred EEEcChHhhc
Confidence 9999999987
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.48 E-value=0.0067 Score=62.09 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.5
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|+|+||+||||++++||..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999985
No 324
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.44 E-value=0.021 Score=62.72 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=24.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcC
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKAG 441 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~ 441 (1205)
+.-|+|+|+||+||||+|+.|+..+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 34689999999999999999999865444
No 325
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.43 E-value=0.024 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668899999999999999998765
No 326
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.43 E-value=0.0044 Score=64.58 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=17.6
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-.+++|++|+|||+++-.+++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999998555554
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.42 E-value=0.017 Score=58.18 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.3
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
-|+|+||||+||||+++.| ..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4889999999999999999 6654
No 328
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.42 E-value=0.01 Score=64.86 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.8
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..+..|+|+|+||+||||+++.|+..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456799999999999999999999875
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.41 E-value=0.03 Score=61.96 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=24.5
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.+.+..-+.|.||+|+|||||++.|+..+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34556678999999999999999998765
No 330
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.40 E-value=0.0074 Score=61.41 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=22.9
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..|+|+||+||||||+++.||..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 331
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.39 E-value=0.012 Score=67.72 Aligned_cols=28 Identities=43% Similarity=0.502 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||+++||..+
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455668899999999999999999765
No 332
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.39 E-value=0.048 Score=65.01 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=30.1
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
+..+.-++|+|++|+|||||++.||..+...+..+.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 34566788999999999999999999886555555543
No 333
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.38 E-value=0.026 Score=59.12 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCC
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQ 442 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~ 442 (1205)
.++..|.|.||+|+||||++++||..+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~ 54 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGK 54 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 34567889999999999999999999864443
No 334
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.38 E-value=0.003 Score=57.61 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=43.2
Q ss_pred CccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 834 STEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 834 ~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+.++|.+||+.|+.+. +...++++..|+.. +.||||+||.++| +|.+.++++
T Consensus 2 d~~~R~~Il~~~~~~~----------~~~~dvdl~~lA~~---t~G~SGADl~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM----------SVERGIRWELISRL---CPNSTGAELRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTS----------CBCSCCCHHHHHHT---CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC----------CCCCccCHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHh
Confidence 5789999999998652 33456888888877 8899999999999 899988877
No 335
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.37 E-value=0.026 Score=69.79 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.9
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+.++++|+||||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998887765
No 336
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.34 E-value=0.046 Score=57.10 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=16.1
Q ss_pred CcceeeecCCCChhHHHHH
Q 000974 413 PRGVLLCGPPGTGKTLIAR 431 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~lar 431 (1205)
.+++++++|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4689999999999997554
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.32 E-value=0.0051 Score=66.46 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=18.6
Q ss_pred eeeeecCCCCCCCccchhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala 724 (1205)
-++|+||+|+|||+|+++|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999888
No 338
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.31 E-value=0.007 Score=61.33 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=22.2
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|.|+||+||||+++.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999885
No 339
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.28 E-value=0.023 Score=61.29 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=31.4
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHHH
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lara 432 (1205)
..+|+++.=....++.|...-.. .+..++... +-..+++++++|+|+|||+++-.
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~---~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFE---KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 45688876555556666543211 122222111 12246799999999999987443
No 340
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.27 E-value=0.013 Score=60.69 Aligned_cols=36 Identities=42% Similarity=0.468 Sum_probs=29.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
.+..|+|+|++|+||||+++.|+..+...+..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 445789999999999999999999997666555544
No 341
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.25 E-value=0.023 Score=64.64 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=35.2
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccc----cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH----ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g----~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
..+|+++.=.+..+..|...-.. .+.-++... +...+++++.+|+|+|||+++-..+..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFE---KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCchhhcCCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 34677776556666666654221 111122111 1233689999999999999876555443
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.24 E-value=0.017 Score=61.26 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|+||||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998874
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.23 E-value=0.018 Score=60.91 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.9
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|+||||+||||+|+.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 344
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.21 E-value=0.026 Score=59.21 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=20.6
Q ss_pred cceeeecCCCChhHHHHHHHHhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l 437 (1205)
.++++++|+|+|||+++-.++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999988777654
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.20 E-value=0.014 Score=67.15 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||.+.||...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4455668899999999999999999765
No 346
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.19 E-value=0.0032 Score=65.04 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.7
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
+.++|+|+||||||++|++|+..+ +++++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT-KRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-CCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCCEEEC
Confidence 468999999999999999999988 6666644
No 347
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.18 E-value=0.014 Score=67.39 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||+++||...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4455568899999999999999999765
No 348
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.18 E-value=0.0097 Score=67.65 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=36.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~ 748 (1205)
-++|+||+|||||+||..||+.+ +..+++.|.-.++.+..+|+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~qvYr~mdIgT 84 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITT 84 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSSTTBSSCTTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHC-CCcEEcccccccccceeeec
Confidence 48899999999999999999998 67788888776666666665
No 349
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.16 E-value=0.011 Score=62.81 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=27.4
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH
Q 000974 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 456 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~ 456 (1205)
.|+|.||||+||+|.|+.||+.++ +..++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcHHHHHH
Confidence 378999999999999999999885 33455556554
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.16 E-value=0.052 Score=61.55 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
.++.-++|+|++|+||||++..||..+...+.++.++..+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45667999999999999999999999887777776665443
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.16 E-value=0.014 Score=61.58 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEE
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (1205)
.+..|+|+|++|+||||+++.|+..++..+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3457999999999999999999999876665553
No 352
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.15 E-value=0.024 Score=64.13 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=28.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
..|+|+||+|||||+|++.||+.++ ..++.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-----CELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccch
Confidence 4689999999999999999999884 566666543
No 353
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.13 E-value=0.018 Score=65.95 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||++.||...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4455668899999999999999999765
No 354
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.13 E-value=0.022 Score=61.15 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=18.2
Q ss_pred eeeecCCCCCCCccchhhhhhc
Q 000974 706 LLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 706 lLl~GppGtGKT~lA~ala~~l 727 (1205)
+|++|++|+|||+++-.+++.+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6788999999999887777654
No 355
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.12 E-value=0.023 Score=62.58 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+..-+.|.||+|+|||||+++|+..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4555678899999999999999999765
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.11 E-value=0.019 Score=60.13 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=24.7
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcC
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAG 441 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~ 441 (1205)
.-|+|.|+||+||||+++.|+..++..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 4689999999999999999999987554
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.11 E-value=0.009 Score=61.56 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=22.5
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|+|+||+||||+++.||..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999885
No 358
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.09 E-value=0.0092 Score=53.49 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=30.1
Q ss_pred cchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 836 EDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 836 ~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
++|.+||+.++.+. +...++++..|+.. +.|+||+||.++| +|.+.++++
T Consensus 1 ~~R~~Il~~~l~~~----------~~~~~vdl~~lA~~---t~G~SGADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKM----------SLAPEADLDSLIIR---NDSLSGAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp -------------C----------EECTTCCSTTTTTS---SCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCC----------CCCCcCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHh
Confidence 47899999998752 23456888888877 8899999999999 888888876
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.08 E-value=0.016 Score=60.95 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=28.0
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEE
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVS 445 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~ 445 (1205)
+..|+|+|++||||||+++.|+..++..+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 457899999999999999999999877665553
No 360
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.07 E-value=0.04 Score=59.96 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=32.6
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHH
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIAR 431 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lar 431 (1205)
+..+|++++-....++.|..+-.. .+.-++... +-..+++++.+|+|+|||+.+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWT---KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 345788886556666666554221 112222111 1234689999999999998654
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.06 E-value=0.01 Score=61.61 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+..|+|+|+|||||||+++.||..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999884
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.04 E-value=0.0095 Score=60.47 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.4
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..+|+|.|++||||||+++.||..++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999986
No 363
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.01 E-value=0.077 Score=59.39 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=48.1
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhh-----HHHHHH-------------HHHHHHHHHHHHH
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV-----LSKWVG-------------EAERQLKLLFEEA 473 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l-----~~~~~g-------------~~e~~l~~lf~~a 473 (1205)
.+..+.|+|++|+||||++..||..+...+..+.++..+...- +..+.. ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556888899999999999999999877666776665443211 111100 1112234455555
Q ss_pred hhcCCceEEEeccC
Q 000974 474 QRNQPSIIFFDEID 487 (1205)
Q Consensus 474 ~~~~p~VL~IDEid 487 (1205)
....+.+|+||+.-
T Consensus 177 ~~~~~D~viiDtpp 190 (295)
T 1ls1_A 177 RLEARDLILVDTAG 190 (295)
T ss_dssp HHHTCCEEEEECCC
T ss_pred HhCCCCEEEEeCCC
Confidence 54567799999863
No 364
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.01 E-value=0.017 Score=70.06 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=45.3
Q ss_pred CceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC-ccccCCCccccCCCceeeecCCCccchhhhH
Q 000974 765 PSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL-AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFL 842 (1205)
Q Consensus 765 p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~-~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~ 842 (1205)
+.||+|||+..|+......+...|..++..-. ..+|.||.+|-+|- +.|+..+...+. ..|.+...+..+-..|+
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR-a~GIhLIlaTQRPs~d~I~~~Iran~~--~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR-AAGIHLILATQRPSVDVITGLIKANIP--TRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT-TTTEEEEEEESCCCTTTSCHHHHHTCC--EEEEECCSCHHHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh-hCCeEEEEEecCcccccccHHHHhhhc--cEEEEEcCCHHHHHHhc
Confidence 46899999999886544444444544444443 45788888888872 245554444555 34446666655544443
No 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.00 E-value=0.056 Score=69.57 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=34.9
Q ss_pred CChhHHHHHhhhhhcccccccccccccccCCCcceeeecCCCChhHHHHHHHHhh
Q 000974 382 GGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACA 436 (1205)
Q Consensus 382 ~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 436 (1205)
+|.+..++.|.+.+... ...+-|.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998876431 12456899999999999999999863
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.00 E-value=0.039 Score=66.99 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=52.6
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch--hhHHH----------HH--------------HHH
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA--DVLSK----------WV--------------GEA 462 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~--~l~~~----------~~--------------g~~ 462 (1205)
++.+...++|.||+|+|||+|++.++..+...+..+.++..... .+... +. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 55667789999999999999999999877555544433322211 11100 00 013
Q ss_pred HHHHHHHHHHHhhcCCceEEEeccCCcc
Q 000974 463 ERQLKLLFEEAQRNQPSIIFFDEIDGLA 490 (1205)
Q Consensus 463 e~~l~~lf~~a~~~~p~VL~IDEid~L~ 490 (1205)
....+.++..+....|.+|+||=+..|.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 3455666777777889999999655554
No 367
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.97 E-value=0.0098 Score=61.56 Aligned_cols=27 Identities=44% Similarity=0.560 Sum_probs=23.4
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
..+..++|+||+|+||||+++.|+..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 445678999999999999999999874
No 368
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.96 E-value=0.0055 Score=65.32 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.8
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-+.|+||+|+|||+|++.|+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 369
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.95 E-value=0.03 Score=60.26 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|.|+|||||||+++.||..++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999985
No 370
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.93 E-value=0.025 Score=59.95 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=29.9
Q ss_pred ccccccCChhHHHHHhhhhhccccccccccccccc---CCCcceeeecCCCChhHHHHHH
Q 000974 376 VSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI---TPPRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 376 ~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~---~~~~~vLL~GppGtGKT~lara 432 (1205)
.+|+++.=.+..++.|.+.-.. .+.-++...+ -..+++++++|+|+|||+.+-.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFY---KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 4567765455556666553211 1111221111 1236799999999999987443
No 371
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.93 E-value=0.037 Score=60.44 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4555678899999999999999999875
No 372
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.91 E-value=0.12 Score=54.50 Aligned_cols=59 Identities=22% Similarity=0.125 Sum_probs=34.8
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHHHHHhh
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARALACA 436 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~laralA~~ 436 (1205)
..+|++++=.+...+.|.+.-.. .+.-++... +-..+++++++|+|+|||.++-..+..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFE---HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCC---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 35688886666667777653211 122222111 112467999999999999876655543
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.90 E-value=0.011 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred cceeeecCCCChhHHHHHHHHh
Q 000974 414 RGVLLCGPPGTGKTLIARALAC 435 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~ 435 (1205)
.-|+|+|+||+||||+|+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999998
No 374
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.89 E-value=0.051 Score=59.20 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678899999999999999998775
No 375
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.88 E-value=0.0063 Score=64.77 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-++|+||+|+|||+|++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 376
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.87 E-value=0.013 Score=59.38 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.5
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|+|++|+||||+++.|+..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999885
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.85 E-value=0.0059 Score=69.47 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.6
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-++|+|+||+|||++|..++..
T Consensus 109 i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999988865
No 378
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.84 E-value=0.016 Score=67.24 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=54.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCChhhHHHHhhccccccCCceeeeccchhhHHhHHHHH
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKTPEEALVHIFGEARRTTPSILYIPQFNLWWENAHEQL 784 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid~l~~~~~~~~ 784 (1205)
-++|.||+|+|||+||..||..+ +..+++.+.-.++.+..+|+......+ +...| --|||.++---.-....+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~-~~~iis~Ds~QvYr~l~i~T~kp~~~E-----~~gv~-hhlid~~~~~~~~s~~~F 76 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQE-----REGIP-HHVMNHVDWSEEYYSHRF 76 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH-TEEEEECCTTTTBSSCTTTTTCCCGGG-----TTTCC-EESCSCBCTTSCCCHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC-CCeEeecCccceecccccccCCCCHHH-----HcCch-hhcCCccChHhHhhHHHH
Confidence 47899999999999999999988 556777776666666555542111111 11122 234555542111112233
Q ss_pred HHHHHHHHHhcCC-CCCeEEeccCCc
Q 000974 785 RAVLLTLLEELPS-HLPILLLGSSSV 809 (1205)
Q Consensus 785 ~~~ll~lL~~~~~-~~~v~vIattn~ 809 (1205)
.......++.+.. +..+||+|-|+.
T Consensus 77 ~~~a~~~i~~i~~~g~~pilVGGTgl 102 (409)
T 3eph_A 77 ETECMNAIEDIHRRGKIPIVVGGTHY 102 (409)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred HHHHHHHHHHHHhcCCCEEEECChHH
Confidence 3344556666533 334455555554
No 379
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.83 E-value=0.012 Score=65.99 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=36.3
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~ 748 (1205)
+-++|+||+|+|||+||..||+.+ +..+++.|.-.++.+..+|+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~qvY~~~~igT 54 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL-PVELISVDSALIYKGMDIGT 54 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTTTTBTTCCTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhC-CCcEEecccccccccccccC
Confidence 457899999999999999999998 66788888777776666665
No 380
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.82 E-value=0.042 Score=70.63 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=21.8
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACA 436 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~ 436 (1205)
....-++|+||+|+||||+.+.++..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34567899999999999999998743
No 381
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.81 E-value=0.0046 Score=64.93 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=26.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
..++|+|+||||||++|++|+..+ +++++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL-NVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-TCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcc
Confidence 468999999999999999999988 6666544
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.80 E-value=0.011 Score=60.81 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.7
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..|+|+|+|||||||+++.||..++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999875
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.80 E-value=0.028 Score=65.05 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||.++||..+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4455668899999999999999999765
No 384
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.78 E-value=0.0063 Score=66.94 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l 727 (1205)
.++||+||||||||++|.|||+.+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 479999999999999999999964
No 385
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.78 E-value=0.013 Score=61.36 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=23.5
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|++|+||||+++.|+..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999884
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.78 E-value=0.09 Score=63.81 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=23.2
Q ss_pred ccCCCcceeeecCCCChhHHHHHHH--Hhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARAL--ACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laral--A~~l 437 (1205)
++.+...++|+||+|+|||||++.+ +..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456678999999999999999994 4444
No 387
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.75 E-value=0.013 Score=64.22 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=22.0
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
-++|+||+||||||||+.||..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999999885
No 388
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.74 E-value=0.12 Score=60.99 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=50.6
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhc-CCeEEEEEecchhh--H---HHHH---H----------HHHHHHHHHHH
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKA-GQKVSFYMRKGADV--L---SKWV---G----------EAERQLKLLFE 471 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~-~~~~~~~~i~~~~l--~---~~~~---g----------~~e~~l~~lf~ 471 (1205)
.+++.|+|+|++|+||||++-.||..+... +.++.++..+...- . ..+. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346788999999999999999999999887 88887776664211 0 0000 0 11223345566
Q ss_pred HHhhcCCceEEEecc
Q 000974 472 EAQRNQPSIIFFDEI 486 (1205)
Q Consensus 472 ~a~~~~p~VL~IDEi 486 (1205)
.+......++|||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 665445679999964
No 389
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.74 E-value=0.015 Score=60.88 Aligned_cols=26 Identities=46% Similarity=0.549 Sum_probs=23.4
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+||+||||+++.|+..++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999885
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.74 E-value=0.014 Score=62.11 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+||+||||+++.||..++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999885
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.73 E-value=0.013 Score=62.38 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+..|+|.|+||+||||+++.||..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999885
No 392
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.72 E-value=0.0058 Score=62.52 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.5
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
-++|+|+||+|||++|++|+..+ +.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l-~~~~~~~ 34 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL-PEPWLAF 34 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS-SSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCCeEEe
Confidence 48899999999999999999988 5566543
No 393
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.72 E-value=0.014 Score=63.39 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..++|+||+|+||||+++.|++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998875
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.72 E-value=0.012 Score=62.95 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+..|+|+|+||+||||+++.||..++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999999874
No 395
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.70 E-value=0.014 Score=67.64 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||+++||..+
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4455668899999999999999999765
No 396
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.70 E-value=0.075 Score=59.56 Aligned_cols=38 Identities=39% Similarity=0.441 Sum_probs=32.0
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
+.-++|+|++|+||||++..||..+...+.++.++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 56788899999999999999999988777777776655
No 397
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.68 E-value=0.07 Score=68.78 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred CcceeeecCCCChhHHHHHHHHh
Q 000974 413 PRGVLLCGPPGTGKTLIARALAC 435 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~ 435 (1205)
..-++|+||+|+||||+.+.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999853
No 398
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.014 Score=60.36 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+||+||||+++.|+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999874
No 399
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.67 E-value=0.012 Score=60.30 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=16.3
Q ss_pred eeeeecCCCCCCCccchh
Q 000974 705 RLLLCGSEGTGVDHLGPA 722 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~a 722 (1205)
-+.|+||+|+|||+++++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 400
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.64 E-value=0.015 Score=65.42 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=34.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCCCccccCCCCCCC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALLSDPSAKT 748 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~~~~~~g~ 748 (1205)
-++|.||+|+|||+||..||..+ +..+++.+.-.++.+..+|+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~QvYr~~~igT 47 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSMQVYRGMDIGT 47 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGGGGBTTCCTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-ccceeecCcccceeeeeecC
Confidence 47889999999999999999988 56677777666666666665
No 401
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.64 E-value=0.077 Score=63.79 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=32.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.+..|+|+|++|+||||++..||..+...+.++.++..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 456799999999999999999999988777777776654
No 402
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.64 E-value=0.072 Score=61.26 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=31.5
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
...|+|+|+||+|||+|+..|+..+...+.++.++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34689999999999999999999887777777666555
No 403
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.64 E-value=0.0073 Score=61.15 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~ 736 (1205)
-++|.|+||+|||++|+.|+..+ +++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL-KYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH-CCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeeecCc
Confidence 37899999999999999999987 66665544
No 404
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.63 E-value=0.048 Score=63.35 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=17.0
Q ss_pred CcceeeecCCCChhHHHHHHH
Q 000974 413 PRGVLLCGPPGTGKTLIARAL 433 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laral 433 (1205)
.+++++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 457999999999999875433
No 405
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.56 E-value=0.0057 Score=62.91 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=26.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
+.++|+|+||+|||++|++|+..+ +++++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEH
Confidence 458999999999999999999987 5655543
No 406
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.56 E-value=0.087 Score=59.88 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.++.-+.|+||+|+||||+++.||..+...+..+.+...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 3456789999999999999999999887666666665444
No 407
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.55 E-value=0.017 Score=60.53 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=23.8
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
++..++|+||+|+||||+++.|+..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 455789999999999999999999874
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.54 E-value=0.013 Score=60.20 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.4
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+||+||||+++.|+..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999885
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.54 E-value=0.0057 Score=63.11 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=26.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~ 736 (1205)
+.++|+|+||+|||++|+.|+..+ +++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-CCCEEeCc
Confidence 358999999999999999999988 67666543
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.54 E-value=0.071 Score=62.94 Aligned_cols=39 Identities=33% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEec
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRK 450 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~ 450 (1205)
.+..|+|+|++|+||||++..||..+...+.++.++..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 356899999999999999999999987777677666544
No 411
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.53 E-value=0.014 Score=66.89 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.5
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-++|+|+||+|||++|..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988875
No 412
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.53 E-value=0.011 Score=68.08 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=42.1
Q ss_pred eeeeecCCCCCCCccchhhhhhc--ccCccccCCCccccC-----CC---------CCCChhhHHHHhhc-cccccCCce
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL--EKFPVHSLGLPALLS-----DP---------SAKTPEEALVHIFG-EARRTTPSI 767 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l--~~~~~~~l~~~~l~~-----~~---------~~g~se~~~~~lf~-~A~~~~p~I 767 (1205)
-++|+|+||+|||++|..++..+ .+.+++.++....+. .+ +...+.+.+..++. .++...+.+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 48899999999999998888653 123344333311110 00 00011122222222 223456899
Q ss_pred eeeccchhhHH
Q 000974 768 LYIPQFNLWWE 778 (1205)
Q Consensus 768 LfiDEid~l~~ 778 (1205)
|+||.+..+..
T Consensus 145 VVIDsl~~l~~ 155 (356)
T 1u94_A 145 IVVDSVAALTP 155 (356)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcCHHHhcc
Confidence 99999999873
No 413
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.53 E-value=0.026 Score=64.91 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+....-+.|.||+|||||||++.||...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455668899999999999999999765
No 414
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.52 E-value=0.016 Score=60.23 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+||+||||+++.|+..++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999999885
No 415
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.52 E-value=0.016 Score=61.62 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.9
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..|+|.|+||+||||+++.||..++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999884
No 416
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.49 E-value=0.017 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..++|+||+|+||||+++.|+..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999998874
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.49 E-value=0.019 Score=62.48 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.6
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..+..|+|+||||+||||+|+.|++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999998874
No 418
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.48 E-value=0.018 Score=60.54 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=24.5
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..+.-++|+||||+||||+++.|+..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999998873
No 419
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.43 E-value=0.033 Score=65.45 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=42.3
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHH-----HHHHHHHHHHHHHHHHHhhcCCceEEEeccC
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS-----KWVGEAERQLKLLFEEAQRNQPSIIFFDEID 487 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~-----~~~g~~e~~l~~lf~~a~~~~p~VL~IDEid 487 (1205)
..++|+||+|+||||++++++..+......+.+..-....... .+...........+..+....|.++++.|+-
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 3578999999999999999999885443344443322110000 0000000112233344455678899999973
No 420
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.42 E-value=0.0061 Score=63.19 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=26.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~ 736 (1205)
..++|+|+||||||+++++|+..+.+++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 468999999999999999999982266666543
No 421
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.42 E-value=0.018 Score=59.35 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|+|||||||+++.|+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999874
No 422
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.38 E-value=0.018 Score=67.89 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=58.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCc-------------------cccCCCCCCChhhHHHHhhccccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLP-------------------ALLSDPSAKTPEEALVHIFGEARR 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~-------------------~l~~~~~~g~se~~~~~lf~~A~~ 762 (1205)
.-++|+|++|+|||+++..||..+. +..+..++.. .++.......+...+...+..+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~ 177 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVK 177 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHh
Confidence 3578999999999999988887642 1222111110 011111112233334456666666
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCc
Q 000974 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSV 809 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~ 809 (1205)
..+.+|+||....+.......+...+..++..+.+...+||+-++..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 67899999999764400112233445444555555555566655543
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.38 E-value=0.038 Score=59.48 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+-|.|+||+||||+++.|+..++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999885
No 424
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.02 Score=59.04 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.2
Q ss_pred CcceeeecCCCChhHHHHHHHHhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l 437 (1205)
..-++|+||+|+|||||++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999875
No 425
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.36 E-value=0.025 Score=66.78 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=72.4
Q ss_pred ceeeeecCCCCCCCccchhhhhhcc--cCccccCCCc-------------------cccCCCCCCChhhHHHHhhccccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELE--KFPVHSLGLP-------------------ALLSDPSAKTPEEALVHIFGEARR 762 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~--~~~~~~l~~~-------------------~l~~~~~~g~se~~~~~lf~~A~~ 762 (1205)
.-++|+|++|+|||+++..||..+. +..+..++.. .++..+....+...+...+..++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 4588999999999999888887542 2222222111 011112223444455667777777
Q ss_pred cCCceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCCccccCCCccccCC--C-ceeeecCCCccchh
Q 000974 763 TTPSILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPLAEVEGDPSTVFPL--R-SVYQVEKPSTEDRS 839 (1205)
Q Consensus 763 ~~p~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~~~Ld~~~~~~f~~--r-~ii~~~~P~~~eR~ 839 (1205)
..+.+|+||.+..+... ..+...+..+..-+.+...++|+-++... +.+.. +..|.. . ..+-+..-+...+.
T Consensus 181 ~~~DvVIIDTaGrl~~d--~~lm~el~~i~~~~~pd~vlLVvDA~~gq-~a~~~--a~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKED--KALIEEMKQISNVIHPHEVILVIDGTIGQ-QAYNQ--ALAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp TTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGGG-GHHHH--HHHHHHSCTTEEEEEECCSSCSSH
T ss_pred CCCCEEEEECCCcccch--HHHHHHHHHHHHhhcCceEEEEEeCCCch-hHHHH--HHHHHhhCCCeEEEEECCCCcccc
Confidence 67899999998765422 23334444444444555566666555432 33322 333321 1 11225555666555
Q ss_pred hhH
Q 000974 840 LFL 842 (1205)
Q Consensus 840 ~i~ 842 (1205)
...
T Consensus 256 G~~ 258 (443)
T 3dm5_A 256 GGA 258 (443)
T ss_dssp HHH
T ss_pred cHH
Confidence 433
No 426
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.33 E-value=0.065 Score=62.38 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.5
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.+.+..-+.|.||+|||||||+++|+..+
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34556678999999999999999999754
No 427
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.33 E-value=0.02 Score=59.98 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.2
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+..|+|+|++||||||+++.|+..++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44689999999999999999998874
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.24 E-value=0.029 Score=59.31 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=25.9
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhh-hcC
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAAS-KAG 441 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~-~~~ 441 (1205)
..+..|+|+|++|+||||+++.|+..+. ..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 4455789999999999999999999886 444
No 429
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.24 E-value=0.02 Score=59.81 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.++.-+.|+||+|+||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345578999999999999999999876
No 430
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.23 E-value=0.0065 Score=62.23 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~ 734 (1205)
.++|+|+||+|||++|++|+..+ +++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEc
Confidence 48899999999999999999988 666654
No 431
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.23 E-value=0.0084 Score=70.17 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=17.7
Q ss_pred eeeeecCCCCCCCccchhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAIL 724 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala 724 (1205)
-++|+||||||||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999665
No 432
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.22 E-value=0.012 Score=67.94 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=53.6
Q ss_pred eeeeecCCCCCCCccchhhhhhccc---CccccCCCc-cc--------cCCCCCCChhhHHHHhhccccccCCceeeecc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEK---FPVHSLGLP-AL--------LSDPSAKTPEEALVHIFGEARRTTPSILYIPQ 772 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~---~~~~~l~~~-~l--------~~~~~~g~se~~~~~lf~~A~~~~p~ILfiDE 772 (1205)
-++|+||+|+|||++.++++..+.. -.++.+.-+ ++ +.....+.....+...+..|-...|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 4889999999999999999886521 222222111 11 10000111112345566667778999999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcC
Q 000974 773 FNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVP 810 (1205)
Q Consensus 773 id~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~ 810 (1205)
+-. ......++.+.. .+..||+|+...
T Consensus 205 p~d------~e~~~~~~~~~~-----~G~~vl~t~H~~ 231 (356)
T 3jvv_A 205 MRD------LETIRLALTAAE-----TGHLVFGTLHTT 231 (356)
T ss_dssp CCS------HHHHHHHHHHHH-----TTCEEEEEESCS
T ss_pred CCC------HHHHHHHHHHHh-----cCCEEEEEEccC
Confidence 952 222333333321 134566777655
No 433
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.20 E-value=0.034 Score=58.67 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=30.1
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
.++.-+.|.||+|+|||||++.|+..+...+..+..+.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 34556889999999999999999998864333345555554
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.16 E-value=0.011 Score=67.14 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.2
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-++|+|+||+|||++|..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888764
No 435
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.15 E-value=0.25 Score=58.06 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
++..++|+|++|+||||++..||..+...+..+.++..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 4567888999999999999999999987777777665553
No 436
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.11 E-value=0.021 Score=59.47 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=22.2
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999885
No 437
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.10 E-value=0.05 Score=56.29 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=23.9
Q ss_pred eeeecCCCChhHHHHHHHHhhhhhcCCeE
Q 000974 416 VLLCGPPGTGKTLIARALACAASKAGQKV 444 (1205)
Q Consensus 416 vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (1205)
|+|.|++||||||+++.|++.+...+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 78999999999999999999985544333
No 438
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.09 E-value=0.037 Score=63.27 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=23.0
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.+++|+|++|+|||+++++||..++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3699999999999999999999885
No 439
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.08 E-value=0.14 Score=55.06 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=32.2
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHHH
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lara 432 (1205)
+..+|.++.-...+...|.+.-. ..+.-++... +-..+++++++|+|+|||+.+-.
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNF---TEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTC---CSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHH
Confidence 34567777555566666655321 1122222211 11246899999999999987543
No 440
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.08 E-value=0.079 Score=59.40 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=30.6
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccc----c-CCCcceeeecCCCChhHHHH
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH----I-TPPRGVLLCGPPGTGKTLIA 430 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g----~-~~~~~vLL~GppGtGKT~la 430 (1205)
..+|++++=....+..|..+-. ..|.-++... + .+++++++++|+|+|||+..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~---~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGF---NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTC---CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3567777555666666655321 1121122111 1 13478999999999999864
No 441
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.06 E-value=0.099 Score=60.42 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=32.7
Q ss_pred cccccccCChhHHHHHhhhhhccccccccccccccc---CCCcceeeecCCCChhHHHHHHHH
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI---TPPRGVLLCGPPGTGKTLIARALA 434 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~---~~~~~vLL~GppGtGKT~laralA 434 (1205)
..+|+++.=....++.|...-.. .+.-++...+ -..+++++.+|+|+|||+++-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFE---KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45688876556666666653211 1111221111 123579999999999998665444
No 442
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.06 E-value=0.12 Score=56.76 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=23.8
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.+. ...+.|.||+|+|||||++.|+..+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 5568899999999999999999875
No 443
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.05 E-value=0.023 Score=57.32 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=22.2
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|+|++|+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999885
No 444
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.05 E-value=0.025 Score=59.03 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.9
Q ss_pred CcceeeecCCCChhHHHHHHHHhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+..|+|.|++|+||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987
No 445
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.02 E-value=0.11 Score=59.32 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecc
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKG 451 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~ 451 (1205)
....-+.|.||||+|||||+++|+..+...+..+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 34456889999999999999999988755455666655443
No 446
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.01 E-value=0.0094 Score=62.50 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=26.0
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
.++|+|+||+|||++|+.|+..+ +++++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l-~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL-GIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeh
Confidence 58899999999999999999988 6666654
No 447
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.00 E-value=0.059 Score=60.57 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=29.9
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
+.++.-+.|+||+|+||||+++.||..+...+..+.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34566789999999999999999999886555455443
No 448
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.97 E-value=0.025 Score=59.75 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
++.-++|+||+|+|||||++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998864
No 449
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.96 E-value=0.029 Score=57.88 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.2
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcC
Q 000974 415 GVLLCGPPGTGKTLIARALACAASKAG 441 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~ 441 (1205)
.|+|+|++|+||||+++.|+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 378999999999999999999885433
No 450
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.95 E-value=0.0084 Score=60.57 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=23.6
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
-++|+|+||+|||++|+.| ..+ +++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER-GAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT-TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHC-CCcEEEH
Confidence 4789999999999999999 665 6665543
No 451
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.94 E-value=0.0087 Score=61.91 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=25.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCcccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~ 734 (1205)
.-++|+|+||+|||++|+.|+..+ +++++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL-RLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCeEec
Confidence 358899999999999999999987 555544
No 452
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.94 E-value=0.026 Score=59.27 Aligned_cols=26 Identities=38% Similarity=0.675 Sum_probs=22.0
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.+.+.|+||+|+|||||++.|+..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44678999999999999999999865
No 453
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.92 E-value=0.023 Score=69.74 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=51.7
Q ss_pred eeeeecCCCCCCCccchhhhhhccc--CccccCCCcc----ccCCCCCCChhhHHHHhhccc---------cccCCceee
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEK--FPVHSLGLPA----LLSDPSAKTPEEALVHIFGEA---------RRTTPSILY 769 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~--~~~~~l~~~~----l~~~~~~g~se~~~~~lf~~A---------~~~~p~ILf 769 (1205)
.++|.|+||||||+++.+++..+.. ..++.+.... .+... .|.....+..++... ......+|+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~-~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV-TGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH-HTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh-hcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 5889999999999999999886522 2222111000 00000 011111222333111 112457999
Q ss_pred eccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCC
Q 000974 770 IPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSS 808 (1205)
Q Consensus 770 iDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn 808 (1205)
|||+..+... .+..++..+.....+++++-.+
T Consensus 285 IDEasml~~~-------~~~~Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 285 VDEVSMMGDA-------LMLSLLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp ECCGGGCCHH-------HHHHHHTTSCTTCEEEEEECTT
T ss_pred EcCccCCCHH-------HHHHHHHhCcCCCEEEEEeccc
Confidence 9999876432 2344556666666778877544
No 454
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.90 E-value=0.068 Score=64.22 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred ceeeeccchhhHHhHHHHHHHHHHHHHHhcCCCCCeEEeccCCcCC-ccccCCCccccCCCceeeecCCCccchhhhHH
Q 000974 766 SILYIPQFNLWWENAHEQLRAVLLTLLEELPSHLPILLLGSSSVPL-AEVEGDPSTVFPLRSVYQVEKPSTEDRSLFLG 843 (1205)
Q Consensus 766 ~ILfiDEid~l~~~~~~~~~~~ll~lL~~~~~~~~v~vIattn~~~-~~Ld~~~~~~f~~r~ii~~~~P~~~eR~~i~~ 843 (1205)
-||+|||+..+.......+...|..+. .+-...+|.+|.+|.+|. +.|+..+...+. ..+-|...+..+...|+.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~La-r~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~--~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLA-QKARAAGIHLVLATQRPSVDVITGLIKANIP--TRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHH-HHCGGGTEEEEEEESCCCTTTSCHHHHHHCC--EEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHH-HHhhhCCcEEEEEecCCccccccHHHHhhcC--CeEEEEcCCHHHHHHhcC
Confidence 389999999888654444444343333 333344777778888883 235543344454 334466666666655543
No 455
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.88 E-value=0.14 Score=54.43 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=30.5
Q ss_pred ccccccccCCh-hHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHHH
Q 000974 374 ESVSFDDIGGL-SEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 374 ~~~~~~~i~Gl-~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lara 432 (1205)
+..+|.+..++ ...++.|.+.-. ..+.-++... +-..+++++.+|+|+|||+.+-.
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRVGI---LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHHTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred ChhhHhhhhccCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 44567774343 345555554321 1122222211 12346899999999999986543
No 456
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.88 E-value=0.028 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.6
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhh
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
++.-+.|.||+|+|||||++.|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 457
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.86 E-value=0.021 Score=65.15 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=44.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhccc-CccccCCCccccC--------CCCCCChhhHHHHhhccccccCCceeeeccch
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEK-FPVHSLGLPALLS--------DPSAKTPEEALVHIFGEARRTTPSILYIPQFN 774 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~-~~~~~l~~~~l~~--------~~~~g~se~~~~~lf~~A~~~~p~ILfiDEid 774 (1205)
..++|+||+|+|||+++++|+..+.. ...+.++....+. .+..| .....+..+..|-...|.+|++||+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 35899999999999999999987521 1223332211110 01101 12244555666667789999999986
Q ss_pred h
Q 000974 775 L 775 (1205)
Q Consensus 775 ~ 775 (1205)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 5
No 458
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.85 E-value=0.014 Score=67.19 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.5
Q ss_pred eeeeecCCCCCCCccchhhhhhc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l 727 (1205)
-++|+||||+|||+|+..++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 459
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.85 E-value=0.13 Score=58.95 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.9
Q ss_pred CcceeeecCCCChhHHHHHHHH
Q 000974 413 PRGVLLCGPPGTGKTLIARALA 434 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA 434 (1205)
++++++++|+|+|||+++-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3789999999999998765443
No 460
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.85 E-value=0.019 Score=64.19 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=20.2
Q ss_pred eeeeecCCCCCCCccchhhhhhc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHEL 727 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l 727 (1205)
-++|+|+||+|||+|++.|+..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988754
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.84 E-value=0.074 Score=60.40 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.9
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.-|+|+||+|||||+|+..||+.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4689999999999999999999985
No 462
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.84 E-value=0.11 Score=60.20 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=33.0
Q ss_pred cccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHHHHH
Q 000974 375 SVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIARALA 434 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~laralA 434 (1205)
..+|+++.=.+..+..|...-.. .+.-++... +-..+++++++|+|+|||+.+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~---~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFE---KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 34688876555666666553211 122222111 1234679999999999997665443
No 463
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.84 E-value=0.043 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=23.6
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASK 439 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~ 439 (1205)
+..|+|+|++|+||||+++.|+..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456889999999999999999998743
No 464
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.82 E-value=0.064 Score=61.73 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.0
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
+.++.-++|+||+|+||||+++.||..+...+..+.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 45566789999999999999999999886555455443
No 465
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.79 E-value=0.028 Score=58.55 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=21.5
Q ss_pred cceeeecCCCChhHHHHHHHHhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l 437 (1205)
+.|+|+||+|+|||+|++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998775
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.76 E-value=0.0097 Score=60.40 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=26.8
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccCC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSLG 736 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~ 736 (1205)
.++|.|++|||||++|+.|+..+ +++++..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l-g~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL-KLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-TCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECh
Confidence 58999999999999999999988 77776543
No 467
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=93.76 E-value=0.0086 Score=53.73 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=41.4
Q ss_pred CccchhhhHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccCCCchhhhhHhH-HHHHHHHHH
Q 000974 834 STEDRSLFLGRLIEAAVSVVLEGRSKKPQESVSLPELPKVPTVESGPKASELKAKV-EAEQHALRR 898 (1205)
Q Consensus 834 ~~~eR~~i~~~~l~~~~~~~~~~~~~~~~~~~~l~~Lp~~~~~~~g~S~aELk~~~-ea~~~alre 898 (1205)
+.++|.+||+.++.+. +...++++..|+.. +.|+||+||.++| +|.+.++++
T Consensus 2 d~~~R~~Il~~~l~~~----------~~~~~vdl~~la~~---t~G~SGADi~~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM----------NLSEEVDLEDYVAR---PDKISGADINSICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHTTS----------CBCTTCCTHHHHTS---SCCCCHHHHHHHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhCCC----------CCCcccCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678999999998642 33456788888877 8899999999999 787777654
No 468
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.72 E-value=0.07 Score=55.91 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=27.6
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEE
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFY 447 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~ 447 (1205)
.+.-+.|+|++|+||||+++.|+..+...+..+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 345688999999999999999999875444444443
No 469
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.71 E-value=0.033 Score=59.25 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.7
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
..|.|.||+||||||+++.|+..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 470
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.69 E-value=0.018 Score=59.05 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.9
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVH 733 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~ 733 (1205)
.-++|+|+||+|||++|+.|+..+ +.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l-~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL-PGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS-TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCCEE
Confidence 358899999999999999999987 66655
No 471
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.69 E-value=0.18 Score=63.44 Aligned_cols=59 Identities=24% Similarity=0.225 Sum_probs=32.5
Q ss_pred cccccccCChhHHHHHhhhhhc-ccccc-cccccccccCCCcceeeecCCCChhHHHHHHHH
Q 000974 375 SVSFDDIGGLSEYIDALKEMVF-FPLLY-PDFFASYHITPPRGVLLCGPPGTGKTLIARALA 434 (1205)
Q Consensus 375 ~~~~~~i~Gl~~~k~~L~e~v~-~pl~~-~~~~~~~g~~~~~~vLL~GppGtGKT~laralA 434 (1205)
..+|++++=.+...+.+...-. .+..+ .+.+.. .+....+++++||+|+|||+++-..+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHHHHH
Confidence 3567777544445555544211 11101 111111 12346789999999999999985443
No 472
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.68 E-value=0.014 Score=59.32 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=23.3
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPV 732 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~ 732 (1205)
.++|+|++|||||+++++|+..+ +.++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l-~~~~ 32 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEF 32 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT-TCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCE
Confidence 58899999999999999999987 4433
No 473
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.63 E-value=0.048 Score=57.08 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=28.1
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEE
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYM 448 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~ 448 (1205)
.-.+++||.|+|||+.+-.++..+...+.++.++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788999999999999999888866666666553
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.63 E-value=0.015 Score=62.16 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=26.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccCCCcccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSLGLPALL 741 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l~~~~l~ 741 (1205)
+-++|.||||+||+|.|+.|+..+ +++.+ +..+++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~-g~~hI--stGdll 64 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF-HFNHL--SSGDLL 64 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH-CCEEE--CHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-CCceE--cHHHHH
Confidence 457789999999999999999987 55444 333444
No 475
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.62 E-value=0.067 Score=57.21 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=31.8
Q ss_pred ccccccccCChhHHHHHhhhhhcccccccccccccc---cCCCcceeeecCCCChhHHHHH
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYH---ITPPRGVLLCGPPGTGKTLIAR 431 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lar 431 (1205)
+..+|++++-...+++.|.+.-.. .+.-++... +...+++++++|+|+|||..+-
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFE---RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 446788886556666666653211 122222111 1234689999999999998743
No 476
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.62 E-value=0.12 Score=69.51 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.4
Q ss_pred cCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 410 ITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
+++...+.|+||+|+|||||+++|...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4556678999999999999999999876
No 477
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.61 E-value=0.061 Score=55.36 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=31.4
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecch
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGA 452 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~ 452 (1205)
..-++|.|++|+|||||++.|+..+...+..+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3468899999999999999999988766666666555543
No 478
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.58 E-value=0.085 Score=60.76 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCCcceeeecCCCChhHHHHHHHHhhhhhc
Q 000974 411 TPPRGVLLCGPPGTGKTLIARALACAASKA 440 (1205)
Q Consensus 411 ~~~~~vLL~GppGtGKT~laralA~~l~~~ 440 (1205)
.....++|+||+|||||+|++.|++.+...
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 345679999999999999999999887554
No 479
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.56 E-value=0.11 Score=59.85 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=31.2
Q ss_pred ccccccccCChhHHHHHhhhhhccccccccccccccc---CCCcceeeecCCCChhHHHHH
Q 000974 374 ESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHI---TPPRGVLLCGPPGTGKTLIAR 431 (1205)
Q Consensus 374 ~~~~~~~i~Gl~~~k~~L~e~v~~pl~~~~~~~~~g~---~~~~~vLL~GppGtGKT~lar 431 (1205)
+..+|+++.=.+...+.|...-. ..+.-++...+ -..+++++.+|+|+|||+++-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGF---EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTC---CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34567777555555666655321 11211221111 123679999999999998744
No 480
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.55 E-value=0.012 Score=62.38 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=25.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
.++|+|+||+|||++|+.|+..+ +++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeH
Confidence 47899999999999999999987 6655544
No 481
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.55 E-value=0.01 Score=61.50 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=26.1
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
..++|+|+||+|||++|+.|+..+ +++++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY-GYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcH
Confidence 358999999999999999999987 6666544
No 482
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.53 E-value=0.1 Score=57.06 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.2
Q ss_pred cceeeecCCCChhHHHHHH
Q 000974 414 RGVLLCGPPGTGKTLIARA 432 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~lara 432 (1205)
+++++++|+|+|||+++-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999987544
No 483
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.52 E-value=0.012 Score=62.79 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=26.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
..++|+|+||+|||++|+.|+..+ +++++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF-HAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CceEEeh
Confidence 358999999999999999999988 6666544
No 484
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.52 E-value=0.011 Score=61.08 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.6
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
..++|+|+||+|||++|+.|+..+ +++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY-GYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeEEeH
Confidence 358899999999999999999987 6655543
No 485
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.51 E-value=0.064 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.8
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|.|+|++||||||+++.++..++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999864
No 486
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.51 E-value=0.011 Score=60.89 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=25.2
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
.++|+|+||+|||++|+.|+..+ +++++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l-~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL-GFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEecH
Confidence 58899999999999999999987 5655543
No 487
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.47 E-value=0.03 Score=59.35 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.0
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 488
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.47 E-value=0.033 Score=59.55 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceeeecCCCChhHHHHHHHHhhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~ 438 (1205)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999885
No 489
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.47 E-value=0.011 Score=60.07 Aligned_cols=29 Identities=17% Similarity=0.513 Sum_probs=25.1
Q ss_pred eeeeecCCCCCCCccchhhhhhcccCcccc
Q 000974 705 RLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~l~~~~~~~ 734 (1205)
.++|+|+||+|||++|+.|+..+ +++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL-GYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH-TCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCcEEc
Confidence 48999999999999999999987 666554
No 490
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.47 E-value=0.099 Score=61.93 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.3
Q ss_pred cceeeecCCCChhHHHHHHHHhhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAASK 439 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~~ 439 (1205)
..++|+||+|+|||+|+..++.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh
Confidence 35899999999999999999877653
No 491
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.45 E-value=0.015 Score=61.02 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=25.2
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCcccc
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHS 734 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~ 734 (1205)
..++|+|++|+|||++|+.|+..+ +..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC-GYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCEEEe
Confidence 358999999999999999999987 555554
No 492
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.45 E-value=0.032 Score=59.94 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.4
Q ss_pred eeeeecCCCCCCCccchhhhhh
Q 000974 705 RLLLCGSEGTGVDHLGPAILHE 726 (1205)
Q Consensus 705 ~lLl~GppGtGKT~lA~ala~~ 726 (1205)
-++|+|+||+|||++|..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998777643
No 493
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.42 E-value=0.012 Score=63.05 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=26.0
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
..++|+|+||+|||++|+.|+..+ +++++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF-ELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS-SSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCeEEec
Confidence 468999999999999999999987 6655543
No 494
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.41 E-value=0.035 Score=57.49 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.0
Q ss_pred cceeeecCCCChhHHHHHHHHhhhh
Q 000974 414 RGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 414 ~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
+-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 495
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.40 E-value=0.029 Score=61.27 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.9
Q ss_pred CcceeeecCCCChhHHHHHHHHhhhh
Q 000974 413 PRGVLLCGPPGTGKTLIARALACAAS 438 (1205)
Q Consensus 413 ~~~vLL~GppGtGKT~laralA~~l~ 438 (1205)
...|+|+|++|+||||+++.||..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999885
No 496
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.36 E-value=0.071 Score=57.34 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCcceeeecCCCChhHHHHHHHHhhhhhcCCeE
Q 000974 412 PPRGVLLCGPPGTGKTLIARALACAASKAGQKV 444 (1205)
Q Consensus 412 ~~~~vLL~GppGtGKT~laralA~~l~~~~~~~ 444 (1205)
.+.-|+|.||+|+||||+++.|+..+.. +..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 3456889999999999999999999876 5444
No 497
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=93.35 E-value=0.21 Score=55.11 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=27.3
Q ss_pred ceeeecCCCChhHHHHHHHHhhhhhcCCeEEEEEecchhhHHHHH
Q 000974 415 GVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWV 459 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l~~~~~~~~~~~i~~~~l~~~~~ 459 (1205)
+.+|++|+|+|||.++-+++..+...+....++.+....+...+.
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 174 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA 174 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHH
Confidence 467899999999999987776653333212233333334444433
No 498
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.34 E-value=0.13 Score=63.26 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred ccCCCcceeeecCCCChhHHHHHHHHhhh
Q 000974 409 HITPPRGVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~laralA~~l 437 (1205)
.+++...+.|+||+|+|||||+++|+..+
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35666789999999999999999998765
No 499
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.34 E-value=0.011 Score=61.44 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=25.8
Q ss_pred ceeeeecCCCCCCCccchhhhhhcccCccccC
Q 000974 704 PRLLLCGSEGTGVDHLGPAILHELEKFPVHSL 735 (1205)
Q Consensus 704 ~~lLl~GppGtGKT~lA~ala~~l~~~~~~~l 735 (1205)
..++|+|+||+|||++|+.|+..+ +++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY-GFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-TCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEcH
Confidence 458899999999999999999987 5555543
No 500
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.34 E-value=0.034 Score=57.49 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.3
Q ss_pred ceeeecCCCChhHHHHHHHHhhh
Q 000974 415 GVLLCGPPGTGKTLIARALACAA 437 (1205)
Q Consensus 415 ~vLL~GppGtGKT~laralA~~l 437 (1205)
-++|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999998744
Done!