Query 000975
Match_columns 1205
No_of_seqs 675 out of 4676
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 12:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.5E-82 1.6E-86 762.9 46.4 585 17-614 8-628 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-63 9.9E-68 638.2 53.5 720 149-1047 181-944 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.8E-41 8.2E-46 373.6 19.5 275 157-440 1-283 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.8E-34 6.1E-39 373.8 28.1 508 512-1175 69-590 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.5E-32 5.3E-37 355.7 26.6 517 533-1199 68-587 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.4E-25 3E-30 241.9 7.1 379 510-1078 50-435 (873)
7 KOG0618 Serine/threonine phosp 99.9 2.7E-26 5.9E-31 261.5 -2.3 144 516-662 2-147 (1081)
8 PLN03210 Resistant to P. syrin 99.9 8.5E-23 1.8E-27 264.8 22.0 393 534-1145 532-945 (1153)
9 KOG0444 Cytoskeletal regulator 99.9 6.8E-25 1.5E-29 237.7 -1.9 366 535-1121 8-380 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 4.2E-26 9E-31 235.5 -13.3 491 513-1167 46-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 2.8E-24 6.1E-29 222.0 -8.6 233 511-786 67-308 (565)
12 KOG4194 Membrane glycoprotein 99.9 5.6E-22 1.2E-26 214.4 8.3 337 509-867 99-448 (873)
13 KOG0444 Cytoskeletal regulator 99.8 4.2E-23 9.2E-28 223.9 -2.5 365 511-991 6-379 (1255)
14 KOG0618 Serine/threonine phosp 99.8 4.6E-23 1E-27 235.4 -3.2 127 514-642 23-152 (1081)
15 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.4E-22 151.3 -5.5 152 513-668 34-189 (264)
16 KOG0617 Ras suppressor protein 99.6 4.3E-17 9.4E-22 149.2 -4.2 176 523-709 22-200 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 165.8 14.6 92 560-665 223-315 (788)
18 PRK15387 E3 ubiquitin-protein 99.5 1.9E-13 4.2E-18 163.8 16.0 135 513-667 202-337 (788)
19 KOG4237 Extracellular matrix p 99.5 1.8E-15 3.9E-20 157.5 -1.6 125 536-662 69-198 (498)
20 KOG4237 Extracellular matrix p 99.4 1.3E-14 2.8E-19 151.2 -1.1 287 549-869 60-357 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 159.0 13.5 95 560-664 200-295 (754)
22 KOG4341 F-box protein containi 99.4 1.8E-14 3.8E-19 151.7 -2.4 278 829-1174 161-444 (483)
23 PRK04841 transcriptional regul 99.3 4E-11 8.7E-16 156.2 22.9 298 147-489 9-333 (903)
24 PRK15370 E3 ubiquitin-protein 99.3 5.2E-12 1.1E-16 152.9 12.1 227 511-786 198-426 (754)
25 KOG4341 F-box protein containi 99.3 2.3E-13 5E-18 143.4 -3.8 320 776-1164 139-460 (483)
26 PRK00411 cdc6 cell division co 99.2 1.7E-09 3.7E-14 125.7 27.0 292 152-467 30-357 (394)
27 TIGR03015 pepcterm_ATPase puta 99.2 3.2E-09 6.9E-14 116.4 24.8 186 170-363 40-242 (269)
28 TIGR02928 orc1/cdc6 family rep 99.2 6.9E-09 1.5E-13 119.4 27.7 296 153-467 16-349 (365)
29 COG2909 MalT ATP-dependent tra 99.2 1.1E-09 2.3E-14 127.2 18.6 298 147-490 14-340 (894)
30 KOG4658 Apoptotic ATPase [Sign 99.1 1.3E-10 2.8E-15 143.2 11.0 158 523-688 512-674 (889)
31 PF01637 Arch_ATPase: Archaeal 99.1 2.1E-10 4.5E-15 123.4 9.0 201 154-358 1-233 (234)
32 PF05729 NACHT: NACHT domain 99.1 9.7E-10 2.1E-14 110.9 11.4 150 174-329 1-163 (166)
33 TIGR00635 ruvB Holliday juncti 99.0 1.1E-08 2.3E-13 114.3 17.9 245 151-428 3-261 (305)
34 PRK00080 ruvB Holliday junctio 99.0 7.9E-09 1.7E-13 115.8 15.3 250 148-428 21-282 (328)
35 PF14580 LRR_9: Leucine-rich r 99.0 6.6E-10 1.4E-14 109.0 5.5 128 558-690 18-148 (175)
36 KOG0532 Leucine-rich repeat (L 98.9 6.1E-11 1.3E-15 130.0 -4.3 141 519-665 105-247 (722)
37 KOG0532 Leucine-rich repeat (L 98.9 7E-11 1.5E-15 129.5 -4.1 166 513-691 76-243 (722)
38 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.2E-14 107.8 4.2 134 522-659 7-147 (175)
39 KOG1259 Nischarin, modulator o 98.8 3.6E-10 7.7E-15 113.8 -1.0 126 510-638 282-410 (490)
40 cd00116 LRR_RI Leucine-rich re 98.8 1.2E-09 2.5E-14 123.8 2.7 175 512-690 23-229 (319)
41 PTZ00112 origin recognition co 98.8 4.1E-07 9E-12 106.8 22.5 241 152-415 755-1030(1164)
42 KOG1259 Nischarin, modulator o 98.8 6.8E-10 1.5E-14 111.8 -1.7 108 557-667 282-389 (490)
43 cd00116 LRR_RI Leucine-rich re 98.7 7E-09 1.5E-13 117.5 5.3 154 532-690 21-201 (319)
44 COG2256 MGS1 ATPase related to 98.7 9E-08 1.9E-12 102.2 12.5 171 148-353 20-206 (436)
45 PRK13342 recombination factor 98.7 2E-07 4.3E-12 107.9 13.6 179 147-360 7-197 (413)
46 PRK15386 type III secretion pr 98.6 7.8E-08 1.7E-12 105.8 9.1 58 945-1014 51-108 (426)
47 PRK06893 DNA replication initi 98.6 4.7E-07 1E-11 95.4 12.8 152 172-359 38-203 (229)
48 PRK07003 DNA polymerase III su 98.6 2.9E-06 6.3E-11 99.7 19.5 187 147-359 11-221 (830)
49 COG4886 Leucine-rich repeat (L 98.6 4.8E-08 1E-12 113.8 4.8 167 512-690 116-285 (394)
50 KOG3207 Beta-tubulin folding c 98.5 2E-08 4.2E-13 107.5 1.0 179 511-690 120-309 (505)
51 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.8E-13 108.8 -0.7 173 510-688 144-332 (505)
52 PF13401 AAA_22: AAA domain; P 98.5 3.2E-07 7E-12 88.0 8.6 117 172-297 3-125 (131)
53 COG3903 Predicted ATPase [Gene 98.5 2.4E-07 5.3E-12 99.9 8.2 289 172-489 13-315 (414)
54 COG4886 Leucine-rich repeat (L 98.5 7.3E-08 1.6E-12 112.3 4.7 102 559-662 116-219 (394)
55 COG1474 CDC6 Cdc6-related prot 98.5 1.5E-05 3.3E-10 89.1 22.3 286 154-466 19-332 (366)
56 PRK12402 replication factor C 98.5 2.3E-06 5E-11 97.5 15.7 202 146-356 9-223 (337)
57 PRK14961 DNA polymerase III su 98.5 4.3E-06 9.4E-11 94.8 17.5 179 147-355 11-216 (363)
58 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.4E-06 3E-11 92.7 12.6 169 156-360 21-202 (226)
59 PF13173 AAA_14: AAA domain 98.5 3.8E-07 8.3E-12 86.5 7.3 121 173-321 2-127 (128)
60 PRK04195 replication factor C 98.4 1.2E-05 2.7E-10 95.0 21.4 187 146-363 8-206 (482)
61 PLN03150 hypothetical protein; 98.4 3.8E-07 8.2E-12 110.9 8.7 101 561-662 420-525 (623)
62 PLN03025 replication factor C 98.4 2E-06 4.3E-11 96.1 13.7 184 146-353 7-194 (319)
63 PTZ00202 tuzin; Provisional 98.4 1.8E-05 3.8E-10 86.6 19.8 166 146-329 256-434 (550)
64 PRK15386 type III secretion pr 98.4 6E-07 1.3E-11 99.0 8.9 136 972-1166 50-187 (426)
65 PF05621 TniB: Bacterial TniB 98.4 4.6E-06 1E-10 87.8 14.8 197 151-355 36-257 (302)
66 COG3899 Predicted ATPase [Gene 98.4 5.2E-06 1.1E-10 103.6 17.7 267 154-432 2-333 (849)
67 PRK05564 DNA polymerase III su 98.4 6.7E-06 1.4E-10 91.6 16.6 177 151-357 3-188 (313)
68 PRK14949 DNA polymerase III su 98.4 5.2E-06 1.1E-10 99.8 16.1 187 147-359 11-221 (944)
69 PRK14962 DNA polymerase III su 98.4 7.2E-06 1.5E-10 95.0 16.7 190 147-362 9-222 (472)
70 PRK12323 DNA polymerase III su 98.4 4.1E-06 9E-11 97.2 14.4 181 147-357 11-223 (700)
71 PRK00440 rfc replication facto 98.4 6.8E-06 1.5E-10 92.8 16.3 186 146-356 11-200 (319)
72 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6.1E-12 74.1 3.5 58 535-593 2-60 (61)
73 PRK14963 DNA polymerase III su 98.4 7.5E-06 1.6E-10 95.7 16.5 198 147-356 9-214 (504)
74 PRK14956 DNA polymerase III su 98.3 5.4E-06 1.2E-10 94.0 14.0 193 146-353 12-216 (484)
75 PRK14960 DNA polymerase III su 98.3 1.1E-05 2.3E-10 94.1 16.7 180 147-356 10-216 (702)
76 KOG2028 ATPase related to the 98.3 5.4E-06 1.2E-10 86.7 12.7 176 148-353 134-330 (554)
77 KOG2120 SCF ubiquitin ligase, 98.3 3E-08 6.6E-13 100.4 -3.6 171 941-1144 205-377 (419)
78 cd00009 AAA The AAA+ (ATPases 98.3 3.1E-06 6.8E-11 83.4 10.8 126 155-299 1-131 (151)
79 PRK06645 DNA polymerase III su 98.3 1.4E-05 3.1E-10 92.8 17.4 179 146-354 15-224 (507)
80 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.6E-12 73.0 3.6 56 560-615 2-60 (61)
81 PRK09087 hypothetical protein; 98.3 1E-05 2.2E-10 84.6 14.7 165 151-360 20-196 (226)
82 PLN03150 hypothetical protein; 98.3 1.1E-06 2.4E-11 106.9 8.7 107 535-642 419-530 (623)
83 PF05496 RuvB_N: Holliday junc 98.3 9.4E-06 2E-10 81.4 13.3 180 146-356 18-218 (233)
84 PRK14957 DNA polymerase III su 98.3 1.5E-05 3.3E-10 93.1 17.1 188 147-360 11-222 (546)
85 TIGR02903 spore_lon_C ATP-depe 98.3 5.6E-05 1.2E-09 91.2 22.4 206 148-362 150-398 (615)
86 PRK05896 DNA polymerase III su 98.3 9.6E-06 2.1E-10 94.7 14.6 199 146-360 10-222 (605)
87 PRK08727 hypothetical protein; 98.3 1.1E-05 2.3E-10 85.4 13.6 171 151-356 18-201 (233)
88 PRK14964 DNA polymerase III su 98.3 1.8E-05 3.9E-10 91.1 16.2 182 147-354 8-212 (491)
89 PRK13341 recombination factor 98.3 5.1E-06 1.1E-10 100.9 12.3 173 147-353 23-211 (725)
90 cd01128 rho_factor Transcripti 98.3 1.7E-06 3.7E-11 91.0 7.2 93 172-265 15-115 (249)
91 PRK14951 DNA polymerase III su 98.2 1.7E-05 3.7E-10 94.0 16.2 180 147-356 11-222 (618)
92 PF13191 AAA_16: AAA ATPase do 98.2 2.9E-06 6.3E-11 87.1 8.5 48 153-200 1-51 (185)
93 TIGR01242 26Sp45 26S proteasom 98.2 3.3E-05 7.2E-10 88.1 17.5 182 147-353 117-328 (364)
94 PRK08084 DNA replication initi 98.2 1.6E-05 3.5E-10 84.1 13.7 165 160-359 32-209 (235)
95 TIGR02397 dnaX_nterm DNA polym 98.2 3.5E-05 7.5E-10 88.4 17.6 186 147-359 9-218 (355)
96 PRK07994 DNA polymerase III su 98.2 2.4E-05 5.2E-10 93.0 16.0 195 147-357 11-218 (647)
97 PRK09376 rho transcription ter 98.2 4.4E-06 9.6E-11 91.1 8.9 100 164-265 159-268 (416)
98 PRK07940 DNA polymerase III su 98.2 3E-05 6.5E-10 87.6 15.9 171 151-357 4-211 (394)
99 PRK14959 DNA polymerase III su 98.2 0.00011 2.4E-09 86.4 21.1 187 147-363 11-225 (624)
100 PF14516 AAA_35: AAA-like doma 98.2 0.00023 5.1E-09 79.5 22.3 210 149-366 8-246 (331)
101 PRK09112 DNA polymerase III su 98.2 2.3E-05 5E-10 87.3 13.8 201 147-359 18-240 (351)
102 PRK08691 DNA polymerase III su 98.1 2.9E-05 6.3E-10 91.6 14.9 179 147-355 11-216 (709)
103 PRK07471 DNA polymerase III su 98.1 6.6E-05 1.4E-09 84.2 16.9 200 147-359 14-238 (365)
104 TIGR00678 holB DNA polymerase 98.1 4.8E-05 1E-09 77.9 14.4 159 163-354 3-186 (188)
105 PRK14958 DNA polymerase III su 98.1 3.3E-05 7.1E-10 90.7 14.7 184 146-355 10-216 (509)
106 PRK09111 DNA polymerase III su 98.1 4.5E-05 9.8E-10 90.8 15.9 198 147-357 19-231 (598)
107 PRK14955 DNA polymerase III su 98.1 2.9E-05 6.2E-10 89.3 13.6 202 147-356 11-225 (397)
108 PRK03992 proteasome-activating 98.1 5.1E-05 1.1E-09 86.7 15.3 181 148-353 127-337 (389)
109 PRK07133 DNA polymerase III su 98.1 6.6E-05 1.4E-09 89.7 16.3 183 146-359 12-220 (725)
110 PRK14970 DNA polymerase III su 98.0 0.0001 2.2E-09 84.5 16.5 183 146-354 11-204 (367)
111 PRK14969 DNA polymerase III su 98.0 4.8E-05 1E-09 90.0 14.0 183 147-359 11-221 (527)
112 PRK08903 DnaA regulatory inact 98.0 4.8E-05 1E-09 80.7 12.6 175 151-363 17-203 (227)
113 PRK14954 DNA polymerase III su 98.0 0.00013 2.8E-09 87.0 17.3 200 147-354 11-223 (620)
114 TIGR02639 ClpA ATP-dependent C 98.0 6.9E-05 1.5E-09 93.3 15.2 168 148-329 178-358 (731)
115 TIGR00767 rho transcription te 98.0 1.7E-05 3.6E-10 87.3 8.3 93 172-265 167-267 (415)
116 TIGR03345 VI_ClpV1 type VI sec 98.0 9.9E-05 2.1E-09 92.4 16.3 186 148-352 183-389 (852)
117 KOG0989 Replication factor C, 98.0 3.3E-05 7.1E-10 79.8 9.8 187 144-353 28-224 (346)
118 KOG2227 Pre-initiation complex 98.0 0.0007 1.5E-08 74.4 20.1 197 150-353 148-362 (529)
119 PRK14950 DNA polymerase III su 98.0 0.00054 1.2E-08 82.8 21.7 198 147-358 11-220 (585)
120 PRK14952 DNA polymerase III su 98.0 0.0002 4.2E-09 84.9 17.4 187 147-363 8-224 (584)
121 PRK14971 DNA polymerase III su 97.9 0.00017 3.7E-09 86.7 16.8 181 147-354 12-217 (614)
122 PRK14953 DNA polymerase III su 97.9 0.00022 4.7E-09 83.3 17.1 182 147-358 11-219 (486)
123 PRK07764 DNA polymerase III su 97.9 0.00015 3.2E-09 89.6 16.4 178 147-355 10-217 (824)
124 PF12799 LRR_4: Leucine Rich r 97.9 9.8E-06 2.1E-10 59.2 3.7 37 560-596 2-38 (44)
125 TIGR03689 pup_AAA proteasome A 97.9 0.00016 3.5E-09 83.6 15.6 166 147-331 177-380 (512)
126 CHL00095 clpC Clp protease ATP 97.9 9.9E-05 2.1E-09 93.0 15.1 166 150-329 177-354 (821)
127 KOG2120 SCF ubiquitin ligase, 97.9 1.1E-06 2.4E-11 89.3 -2.1 186 946-1166 185-373 (419)
128 KOG3665 ZYG-1-like serine/thre 97.9 3.6E-06 7.8E-11 101.7 1.6 127 509-636 119-259 (699)
129 PF00308 Bac_DnaA: Bacterial d 97.9 7.3E-05 1.6E-09 77.9 11.1 162 173-358 34-207 (219)
130 KOG1947 Leucine rich repeat pr 97.9 2.4E-06 5.3E-11 103.1 0.1 193 945-1172 242-443 (482)
131 PRK06305 DNA polymerase III su 97.9 0.00028 6E-09 82.0 16.9 186 147-359 12-223 (451)
132 PHA02544 44 clamp loader, smal 97.9 0.0001 2.2E-09 82.8 12.9 153 145-328 14-172 (316)
133 PRK08451 DNA polymerase III su 97.9 0.00031 6.8E-09 81.8 16.9 186 147-358 9-217 (535)
134 KOG4579 Leucine-rich repeat (L 97.9 1.1E-06 2.4E-11 78.9 -2.4 108 514-622 29-141 (177)
135 PRK05642 DNA replication initi 97.9 0.00019 4.2E-09 75.8 14.0 151 174-359 46-208 (234)
136 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.3E-11 101.2 -2.4 108 556-666 92-200 (414)
137 PRK14087 dnaA chromosomal repl 97.9 0.00011 2.4E-09 85.3 12.6 166 174-361 142-321 (450)
138 KOG2543 Origin recognition com 97.9 0.00017 3.7E-09 76.9 12.7 170 153-328 7-192 (438)
139 KOG1859 Leucine-rich repeat pr 97.9 3E-07 6.6E-12 104.2 -7.9 124 511-638 163-290 (1096)
140 KOG1909 Ran GTPase-activating 97.9 4.2E-06 9.2E-11 87.6 0.9 38 580-617 90-133 (382)
141 TIGR02881 spore_V_K stage V sp 97.9 6.8E-05 1.5E-09 81.1 10.2 134 173-330 42-192 (261)
142 PRK05563 DNA polymerase III su 97.8 0.00043 9.4E-09 82.7 17.4 194 147-355 11-216 (559)
143 KOG0531 Protein phosphatase 1, 97.8 3.9E-06 8.5E-11 97.7 0.1 119 516-637 76-196 (414)
144 PRK14948 DNA polymerase III su 97.8 0.0004 8.6E-09 83.6 16.9 198 147-358 11-221 (620)
145 PRK11331 5-methylcytosine-spec 97.8 9.2E-05 2E-09 83.1 10.7 110 152-266 175-285 (459)
146 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.7E-10 57.0 4.2 38 605-643 2-39 (44)
147 CHL00181 cbbX CbbX; Provisiona 97.8 0.00032 6.9E-09 76.3 14.6 133 174-330 60-210 (287)
148 PTZ00454 26S protease regulato 97.8 0.00041 8.9E-09 78.8 15.0 183 147-353 140-351 (398)
149 PRK06647 DNA polymerase III su 97.7 0.00077 1.7E-08 80.1 17.1 181 146-357 10-218 (563)
150 PRK11034 clpA ATP-dependent Cl 97.7 0.00027 5.8E-09 86.6 13.2 159 150-329 184-362 (758)
151 TIGR02880 cbbX_cfxQ probable R 97.7 0.00054 1.2E-08 74.6 14.2 132 175-330 60-209 (284)
152 KOG1859 Leucine-rich repeat pr 97.7 7.7E-07 1.7E-11 101.0 -8.4 78 556-636 184-263 (1096)
153 PTZ00361 26 proteosome regulat 97.7 0.00053 1.1E-08 78.4 13.8 183 147-353 178-389 (438)
154 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00081 1.7E-08 85.2 16.4 160 148-329 169-349 (852)
155 PRK14965 DNA polymerase III su 97.6 0.00069 1.5E-08 81.4 15.0 182 147-359 11-221 (576)
156 KOG1947 Leucine rich repeat pr 97.6 1.4E-05 3E-10 96.5 0.2 117 747-871 187-308 (482)
157 KOG3665 ZYG-1-like serine/thre 97.6 4.1E-05 8.8E-10 92.8 3.5 132 533-664 121-262 (699)
158 PRK10865 protein disaggregatio 97.6 0.001 2.3E-08 83.7 15.8 160 148-329 174-354 (857)
159 TIGR00362 DnaA chromosomal rep 97.6 0.00057 1.2E-08 79.4 12.7 159 174-356 137-307 (405)
160 COG3267 ExeA Type II secretory 97.5 0.0054 1.2E-07 62.5 17.3 184 170-361 48-247 (269)
161 COG1222 RPT1 ATP-dependent 26S 97.5 0.0016 3.5E-08 69.2 14.0 188 146-363 145-371 (406)
162 PRK05707 DNA polymerase III su 97.5 0.0019 4.1E-08 71.6 15.1 152 173-359 22-203 (328)
163 PF00004 AAA: ATPase family as 97.5 0.00013 2.9E-09 69.9 5.2 69 176-265 1-70 (132)
164 KOG1909 Ran GTPase-activating 97.5 6.8E-05 1.5E-09 78.9 3.2 178 532-711 90-310 (382)
165 TIGR01241 FtsH_fam ATP-depende 97.5 0.0016 3.5E-08 77.6 15.2 183 147-353 50-260 (495)
166 PRK07399 DNA polymerase III su 97.5 0.0025 5.5E-08 70.2 15.5 195 151-358 3-220 (314)
167 PRK00149 dnaA chromosomal repl 97.5 0.0033 7.1E-08 74.0 17.6 159 173-356 148-319 (450)
168 PRK14088 dnaA chromosomal repl 97.5 0.00083 1.8E-08 78.0 12.3 160 173-355 130-301 (440)
169 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.7E-09 69.9 5.3 64 555-618 60-127 (233)
170 PRK14086 dnaA chromosomal repl 97.4 0.0011 2.5E-08 77.7 13.0 157 174-355 315-484 (617)
171 KOG1644 U2-associated snRNP A' 97.4 0.00022 4.7E-09 69.3 5.7 103 511-614 41-150 (233)
172 CHL00176 ftsH cell division pr 97.4 0.0017 3.6E-08 78.3 14.5 178 150-351 181-386 (638)
173 PRK06620 hypothetical protein; 97.4 0.00052 1.1E-08 71.1 8.9 134 174-354 45-184 (214)
174 KOG2982 Uncharacterized conser 97.4 4.4E-05 9.6E-10 78.0 0.1 82 556-637 68-156 (418)
175 PF05659 RPW8: Arabidopsis bro 97.4 0.0018 4E-08 61.5 10.9 114 2-131 3-116 (147)
176 TIGR00602 rad24 checkpoint pro 97.4 0.00078 1.7E-08 80.4 10.4 55 144-198 76-135 (637)
177 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0032 7E-08 73.3 15.1 183 150-353 226-429 (489)
178 PF05673 DUF815: Protein of un 97.3 0.0069 1.5E-07 62.2 15.5 55 147-201 22-80 (249)
179 COG2255 RuvB Holliday junction 97.3 0.0083 1.8E-07 61.9 15.4 179 147-355 21-219 (332)
180 PHA00729 NTP-binding motif con 97.3 0.0025 5.5E-08 65.1 11.6 35 163-197 7-41 (226)
181 KOG4579 Leucine-rich repeat (L 97.3 5E-05 1.1E-09 68.5 -0.8 109 536-646 29-141 (177)
182 COG0466 Lon ATP-dependent Lon 97.2 0.0025 5.4E-08 74.2 12.4 162 153-329 324-508 (782)
183 smart00382 AAA ATPases associa 97.2 0.00099 2.2E-08 64.8 8.2 90 174-267 3-92 (148)
184 COG0593 DnaA ATPase involved i 97.2 0.0081 1.8E-07 67.1 16.0 133 172-329 112-257 (408)
185 COG1223 Predicted ATPase (AAA+ 97.2 0.003 6.6E-08 63.7 11.2 175 151-353 120-319 (368)
186 KOG0739 AAA+-type ATPase [Post 97.2 0.056 1.2E-06 56.0 20.3 157 173-352 166-334 (439)
187 PF10443 RNA12: RNA12 protein; 97.2 0.017 3.7E-07 64.2 18.1 193 157-366 1-285 (431)
188 PRK12422 chromosomal replicati 97.2 0.0023 5.1E-08 74.0 12.1 152 174-352 142-306 (445)
189 KOG2004 Mitochondrial ATP-depe 97.2 0.0051 1.1E-07 71.2 14.2 99 152-265 411-517 (906)
190 PRK08116 hypothetical protein; 97.2 0.00098 2.1E-08 71.8 8.2 75 174-264 115-189 (268)
191 PRK12608 transcription termina 97.2 0.0034 7.5E-08 69.1 12.3 104 161-265 120-232 (380)
192 KOG0741 AAA+-type ATPase [Post 97.2 0.0084 1.8E-07 66.8 15.0 152 172-349 537-704 (744)
193 COG1373 Predicted ATPase (AAA+ 97.2 0.0033 7.1E-08 71.9 12.4 135 157-324 22-162 (398)
194 PRK10536 hypothetical protein; 97.2 0.0014 3.1E-08 68.0 8.5 57 150-208 53-109 (262)
195 KOG0991 Replication factor C, 97.1 0.00098 2.1E-08 65.9 6.6 76 144-219 19-94 (333)
196 PRK08118 topology modulation p 97.1 0.00024 5.2E-09 70.6 2.6 35 174-208 2-37 (167)
197 PRK08939 primosomal protein Dn 97.1 0.031 6.6E-07 61.4 18.8 95 156-269 135-235 (306)
198 COG5238 RNA1 Ran GTPase-activa 97.1 0.00063 1.4E-08 68.9 4.6 85 533-617 29-133 (388)
199 TIGR00763 lon ATP-dependent pr 97.1 0.0089 1.9E-07 75.1 15.9 46 153-198 321-372 (775)
200 PRK08058 DNA polymerase III su 97.0 0.0071 1.5E-07 67.6 13.5 147 153-328 6-181 (329)
201 PF13177 DNA_pol3_delta2: DNA 97.0 0.005 1.1E-07 60.8 10.9 136 156-317 1-162 (162)
202 PF02562 PhoH: PhoH-like prote 97.0 0.0027 5.8E-08 64.3 8.8 53 156-210 4-56 (205)
203 PRK06090 DNA polymerase III su 97.0 0.031 6.8E-07 61.2 17.5 180 160-378 11-217 (319)
204 PF04665 Pox_A32: Poxvirus A32 97.0 0.0019 4E-08 67.0 7.6 35 175-211 15-49 (241)
205 PF00448 SRP54: SRP54-type pro 97.0 0.0046 1E-07 63.0 10.1 88 173-262 1-92 (196)
206 PRK08769 DNA polymerase III su 97.0 0.028 6E-07 61.8 16.6 173 159-359 11-208 (319)
207 PRK10787 DNA-binding ATP-depen 96.9 0.0068 1.5E-07 75.3 13.2 162 153-329 323-506 (784)
208 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0044 9.5E-08 77.9 11.6 105 153-265 567-680 (852)
209 TIGR02639 ClpA ATP-dependent C 96.9 0.0072 1.6E-07 75.5 13.6 102 153-265 455-565 (731)
210 PRK06871 DNA polymerase III su 96.9 0.03 6.5E-07 61.6 16.2 175 160-356 10-200 (325)
211 COG2812 DnaX DNA polymerase II 96.9 0.0068 1.5E-07 69.9 11.3 191 147-353 11-214 (515)
212 PRK07993 DNA polymerase III su 96.8 0.025 5.4E-07 63.0 15.4 165 159-356 9-201 (334)
213 TIGR01243 CDC48 AAA family ATP 96.8 0.011 2.5E-07 74.1 14.2 180 150-353 451-657 (733)
214 KOG2228 Origin recognition com 96.8 0.022 4.8E-07 60.3 13.7 173 152-329 24-219 (408)
215 COG0542 clpA ATP-binding subun 96.8 0.018 3.9E-07 69.4 14.7 103 154-265 493-605 (786)
216 PRK12727 flagellar biosynthesi 96.8 0.03 6.4E-07 64.6 15.7 88 173-263 350-438 (559)
217 TIGR01243 CDC48 AAA family ATP 96.8 0.01 2.2E-07 74.6 13.2 180 150-354 176-382 (733)
218 PRK06964 DNA polymerase III su 96.8 0.037 8E-07 61.4 16.0 104 240-359 115-225 (342)
219 TIGR02237 recomb_radB DNA repa 96.8 0.0054 1.2E-07 64.1 9.2 88 173-264 12-108 (209)
220 COG5238 RNA1 Ran GTPase-activa 96.8 0.00023 5E-09 72.0 -1.1 224 556-810 27-281 (388)
221 PRK08181 transposase; Validate 96.7 0.0014 3E-08 70.1 4.3 79 166-265 101-179 (269)
222 PRK00771 signal recognition pa 96.7 0.037 8.1E-07 63.5 16.0 88 172-263 94-185 (437)
223 PRK12377 putative replication 96.7 0.016 3.5E-07 61.1 12.2 75 172-264 100-174 (248)
224 COG1875 NYN ribonuclease and A 96.7 0.0031 6.8E-08 67.2 6.6 56 152-207 224-280 (436)
225 CHL00095 clpC Clp protease ATP 96.7 0.05 1.1E-06 69.0 18.3 105 153-265 510-623 (821)
226 TIGR03346 chaperone_ClpB ATP-d 96.6 0.017 3.6E-07 73.5 13.8 105 153-265 566-679 (852)
227 PF07693 KAP_NTPase: KAP famil 96.6 0.075 1.6E-06 60.0 17.8 55 158-212 2-60 (325)
228 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0081 1.8E-07 64.2 9.3 91 173-264 19-126 (235)
229 COG0542 clpA ATP-binding subun 96.6 0.023 5.1E-07 68.4 13.7 168 149-329 167-346 (786)
230 TIGR02012 tigrfam_recA protein 96.6 0.0089 1.9E-07 65.3 9.4 86 173-265 55-145 (321)
231 KOG2982 Uncharacterized conser 96.6 0.0027 5.9E-08 65.4 5.0 197 743-1015 66-264 (418)
232 KOG0734 AAA+-type ATPase conta 96.6 0.0045 9.8E-08 68.9 6.9 88 157-265 312-408 (752)
233 KOG1514 Origin recognition com 96.6 0.057 1.2E-06 63.0 15.8 164 153-329 397-589 (767)
234 PRK10865 protein disaggregatio 96.5 0.029 6.2E-07 71.0 14.9 105 153-265 569-682 (857)
235 KOG0730 AAA+-type ATPase [Post 96.5 0.13 2.9E-06 59.8 18.4 163 147-331 429-617 (693)
236 cd01393 recA_like RecA is a b 96.5 0.014 3.1E-07 61.8 10.5 91 173-264 19-125 (226)
237 cd00983 recA RecA is a bacter 96.5 0.011 2.5E-07 64.4 9.3 86 173-265 55-145 (325)
238 PRK09354 recA recombinase A; P 96.5 0.011 2.5E-07 65.0 9.3 86 173-265 60-150 (349)
239 TIGR02640 gas_vesic_GvpN gas v 96.5 0.042 9E-07 59.4 13.6 55 160-221 10-64 (262)
240 PRK04296 thymidine kinase; Pro 96.4 0.0031 6.7E-08 64.3 4.5 111 174-299 3-117 (190)
241 TIGR02238 recomb_DMC1 meiotic 96.4 0.011 2.4E-07 65.0 9.0 91 173-264 96-202 (313)
242 PRK11034 clpA ATP-dependent Cl 96.4 0.021 4.6E-07 70.4 12.2 102 153-265 459-569 (758)
243 TIGR01425 SRP54_euk signal rec 96.4 0.15 3.2E-06 58.1 17.8 39 172-212 99-137 (429)
244 PF13207 AAA_17: AAA domain; P 96.4 0.0029 6.4E-08 59.4 3.6 24 175-198 1-24 (121)
245 PRK07952 DNA replication prote 96.4 0.023 4.9E-07 59.9 10.5 89 160-265 84-174 (244)
246 PRK10867 signal recognition pa 96.4 0.17 3.7E-06 58.1 18.2 59 172-231 99-158 (433)
247 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0077 1.7E-07 66.2 7.0 56 153-208 52-118 (361)
248 PRK14722 flhF flagellar biosyn 96.3 0.015 3.2E-07 64.9 9.4 89 173-264 137-226 (374)
249 KOG0733 Nuclear AAA ATPase (VC 96.3 0.053 1.1E-06 62.0 13.5 132 173-330 545-693 (802)
250 KOG0733 Nuclear AAA ATPase (VC 96.3 0.013 2.8E-07 66.8 8.7 95 150-265 188-294 (802)
251 cd01120 RecA-like_NTPases RecA 96.3 0.021 4.5E-07 57.0 9.8 40 175-216 1-40 (165)
252 KOG0736 Peroxisome assembly fa 96.3 0.035 7.7E-07 65.1 12.3 98 147-265 667-776 (953)
253 PRK09361 radB DNA repair and r 96.3 0.014 3E-07 61.8 8.7 45 173-220 23-67 (225)
254 KOG2739 Leucine-rich acidic nu 96.3 0.0023 4.9E-08 65.4 2.4 82 556-638 40-127 (260)
255 PRK07261 topology modulation p 96.3 0.0078 1.7E-07 60.2 6.2 34 175-208 2-36 (171)
256 KOG0731 AAA+-type ATPase conta 96.3 0.076 1.6E-06 63.7 15.0 182 152-355 311-520 (774)
257 KOG0744 AAA+-type ATPase [Post 96.3 0.012 2.6E-07 61.6 7.4 83 173-265 177-262 (423)
258 TIGR03499 FlhF flagellar biosy 96.2 0.025 5.5E-07 61.6 10.4 88 172-262 193-281 (282)
259 COG1484 DnaC DNA replication p 96.2 0.021 4.5E-07 60.9 9.5 76 172-265 104-179 (254)
260 KOG0652 26S proteasome regulat 96.2 0.037 7.9E-07 55.9 10.3 53 146-198 165-230 (424)
261 PRK11889 flhF flagellar biosyn 96.2 0.038 8.2E-07 61.2 11.4 90 172-264 240-331 (436)
262 PRK05541 adenylylsulfate kinas 96.2 0.012 2.6E-07 59.5 7.0 37 172-210 6-42 (176)
263 PRK04132 replication factor C 96.1 0.067 1.5E-06 66.1 14.3 155 178-356 569-728 (846)
264 PRK06696 uridine kinase; Valid 96.1 0.0087 1.9E-07 63.0 5.8 44 156-199 2-48 (223)
265 PF03215 Rad17: Rad17 cell cyc 96.1 0.029 6.2E-07 66.0 10.5 63 144-210 11-78 (519)
266 KOG0735 AAA+-type ATPase [Post 96.1 0.026 5.7E-07 65.5 9.6 159 174-352 432-608 (952)
267 COG0470 HolB ATPase involved i 96.1 0.031 6.8E-07 63.2 10.5 138 154-315 3-167 (325)
268 TIGR01069 mutS2 MutS2 family p 96.1 0.0092 2E-07 74.0 6.5 192 172-380 321-522 (771)
269 KOG2739 Leucine-rich acidic nu 96.0 0.0027 5.8E-08 64.9 1.5 82 556-637 62-153 (260)
270 KOG1969 DNA replication checkp 96.0 0.013 2.9E-07 68.2 7.1 75 172-265 325-399 (877)
271 PRK06921 hypothetical protein; 96.0 0.027 5.9E-07 60.6 9.3 39 172-211 116-154 (266)
272 KOG0728 26S proteasome regulat 96.0 0.19 4.1E-06 50.7 14.1 150 154-329 149-331 (404)
273 TIGR00959 ffh signal recogniti 96.0 0.35 7.7E-06 55.5 18.4 91 172-263 98-192 (428)
274 KOG2035 Replication factor C, 96.0 0.63 1.4E-05 48.2 17.8 209 151-381 12-261 (351)
275 COG0464 SpoVK ATPases of the A 96.0 0.039 8.5E-07 66.1 11.3 139 172-331 275-425 (494)
276 cd01133 F1-ATPase_beta F1 ATP 96.0 0.055 1.2E-06 57.5 10.8 92 173-265 69-175 (274)
277 PLN03187 meiotic recombination 95.9 0.035 7.6E-07 61.5 9.8 91 173-264 126-232 (344)
278 PRK10733 hflB ATP-dependent me 95.9 0.035 7.7E-07 68.0 10.8 155 174-352 186-356 (644)
279 PF08423 Rad51: Rad51; InterP 95.9 0.032 6.8E-07 59.8 9.2 91 173-264 38-144 (256)
280 KOG0743 AAA+-type ATPase [Post 95.9 1.4 3E-05 49.5 21.6 158 175-366 237-417 (457)
281 PRK04301 radA DNA repair and r 95.9 0.039 8.4E-07 61.6 10.0 58 173-231 102-163 (317)
282 COG0468 RecA RecA/RadA recombi 95.9 0.058 1.3E-06 57.5 10.6 88 173-264 60-152 (279)
283 COG1618 Predicted nucleotide k 95.9 0.012 2.6E-07 55.4 4.7 30 174-204 6-35 (179)
284 PRK12724 flagellar biosynthesi 95.8 0.037 8E-07 62.2 9.3 84 173-261 223-307 (432)
285 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.065 1.4E-06 57.0 11.0 48 172-223 20-67 (237)
286 PLN03186 DNA repair protein RA 95.8 0.031 6.7E-07 62.1 8.7 59 173-232 123-185 (342)
287 PF01695 IstB_IS21: IstB-like 95.8 0.023 5.1E-07 57.0 7.0 74 173-265 47-120 (178)
288 PRK14974 cell division protein 95.8 0.097 2.1E-06 58.0 12.4 92 172-265 139-234 (336)
289 PRK06526 transposase; Provisio 95.8 0.017 3.7E-07 61.5 6.3 74 173-265 98-171 (254)
290 cd03115 SRP The signal recogni 95.8 0.053 1.2E-06 54.6 9.6 54 175-230 2-56 (173)
291 TIGR02236 recomb_radA DNA repa 95.8 0.049 1.1E-06 60.7 10.2 58 173-231 95-156 (310)
292 PF00154 RecA: recA bacterial 95.7 0.043 9.2E-07 59.8 9.2 86 173-265 53-143 (322)
293 PRK12726 flagellar biosynthesi 95.7 0.063 1.4E-06 59.3 10.5 90 172-264 205-296 (407)
294 TIGR02239 recomb_RAD51 DNA rep 95.7 0.036 7.8E-07 61.3 8.8 58 173-231 96-157 (316)
295 KOG2123 Uncharacterized conser 95.7 0.00062 1.3E-08 69.2 -4.5 106 581-689 18-124 (388)
296 PTZ00494 tuzin-like protein; P 95.7 0.49 1.1E-05 52.6 16.7 164 148-329 367-544 (664)
297 PRK12723 flagellar biosynthesi 95.7 0.074 1.6E-06 60.1 11.3 90 172-264 173-265 (388)
298 TIGR00064 ftsY signal recognit 95.7 0.077 1.7E-06 57.3 11.0 91 171-264 70-165 (272)
299 KOG0729 26S proteasome regulat 95.7 0.055 1.2E-06 54.9 8.9 96 148-264 173-281 (435)
300 cd01394 radB RadB. The archaea 95.7 0.038 8.2E-07 58.2 8.5 42 173-216 19-60 (218)
301 COG1066 Sms Predicted ATP-depe 95.6 0.049 1.1E-06 59.6 9.1 87 173-265 93-180 (456)
302 PRK06067 flagellar accessory p 95.6 0.07 1.5E-06 56.8 10.4 86 173-263 25-130 (234)
303 PF00560 LRR_1: Leucine Rich R 95.6 0.0055 1.2E-07 37.1 1.0 21 605-625 1-21 (22)
304 KOG2123 Uncharacterized conser 95.6 0.00091 2E-08 68.1 -3.9 99 534-658 19-123 (388)
305 COG2607 Predicted ATPase (AAA+ 95.6 0.066 1.4E-06 54.0 8.9 121 148-299 56-184 (287)
306 KOG0727 26S proteasome regulat 95.6 0.053 1.2E-06 54.5 8.2 95 150-265 153-260 (408)
307 KOG3864 Uncharacterized conser 95.5 0.0021 4.6E-08 62.7 -1.5 90 975-1073 102-191 (221)
308 PF13306 LRR_5: Leucine rich r 95.5 0.041 8.9E-07 52.2 7.3 104 551-660 4-111 (129)
309 PRK15455 PrkA family serine pr 95.5 0.017 3.8E-07 66.6 5.3 48 151-198 75-128 (644)
310 PTZ00035 Rad51 protein; Provis 95.5 0.067 1.4E-06 59.7 9.9 91 173-264 118-224 (337)
311 PRK07132 DNA polymerase III su 95.5 0.37 7.9E-06 52.6 15.3 167 161-358 5-184 (299)
312 PRK09270 nucleoside triphospha 95.5 0.092 2E-06 55.5 10.6 29 171-199 31-59 (229)
313 PRK15429 formate hydrogenlyase 95.5 0.18 3.8E-06 63.1 14.7 63 150-214 374-438 (686)
314 PRK09183 transposase/IS protei 95.5 0.046 1E-06 58.7 8.2 26 173-198 102-127 (259)
315 PF13306 LRR_5: Leucine rich r 95.5 0.037 8E-07 52.5 6.8 116 532-655 10-129 (129)
316 PF06309 Torsin: Torsin; Inte 95.4 0.15 3.4E-06 46.6 10.1 44 154-197 27-77 (127)
317 PLN00020 ribulose bisphosphate 95.4 0.025 5.3E-07 61.7 5.9 27 172-198 147-173 (413)
318 COG2884 FtsE Predicted ATPase 95.4 0.063 1.4E-06 52.2 7.9 28 172-199 27-54 (223)
319 PRK13531 regulatory ATPase Rav 95.4 0.025 5.4E-07 64.6 6.2 50 153-204 21-70 (498)
320 cd01131 PilT Pilus retraction 95.4 0.017 3.7E-07 59.4 4.6 110 174-301 2-112 (198)
321 PRK06835 DNA replication prote 95.4 0.083 1.8E-06 58.5 10.1 38 173-212 183-220 (329)
322 PRK06547 hypothetical protein; 95.4 0.022 4.9E-07 56.6 5.2 36 163-198 5-40 (172)
323 cd01121 Sms Sms (bacterial rad 95.4 0.048 1E-06 61.6 8.3 88 173-265 82-170 (372)
324 PRK08533 flagellar accessory p 95.3 0.088 1.9E-06 55.5 9.7 53 173-230 24-76 (230)
325 PRK04328 hypothetical protein; 95.3 0.07 1.5E-06 57.1 9.1 42 172-215 22-63 (249)
326 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.078 1.7E-06 57.1 9.3 40 173-214 36-75 (259)
327 TIGR01650 PD_CobS cobaltochela 95.3 0.24 5.2E-06 54.1 12.9 61 153-220 46-106 (327)
328 TIGR01817 nifA Nif-specific re 95.3 0.15 3.2E-06 61.7 12.8 64 149-214 193-258 (534)
329 cd01124 KaiC KaiC is a circadi 95.2 0.051 1.1E-06 55.6 7.3 37 176-214 2-38 (187)
330 PF13481 AAA_25: AAA domain; P 95.2 0.1 2.2E-06 53.6 9.6 41 174-214 33-81 (193)
331 KOG1532 GTPase XAB1, interacts 95.2 0.14 3E-06 52.6 9.7 64 172-235 18-90 (366)
332 COG1102 Cmk Cytidylate kinase 95.2 0.027 5.8E-07 53.1 4.4 45 175-232 2-46 (179)
333 cd02025 PanK Pantothenate kina 95.1 0.098 2.1E-06 54.6 9.0 41 175-215 1-41 (220)
334 PF13238 AAA_18: AAA domain; P 95.1 0.018 3.9E-07 54.7 3.2 22 176-197 1-22 (129)
335 TIGR00554 panK_bact pantothena 95.1 0.1 2.3E-06 56.4 9.3 45 171-215 60-104 (290)
336 PRK00409 recombination and DNA 95.0 0.23 4.9E-06 62.2 13.5 183 171-380 325-527 (782)
337 TIGR02974 phageshock_pspF psp 95.0 0.23 5.1E-06 55.4 12.3 43 155-197 2-46 (329)
338 PRK08699 DNA polymerase III su 95.0 0.3 6.5E-06 54.2 13.0 154 173-355 21-202 (325)
339 COG0541 Ffh Signal recognition 95.0 2.5 5.4E-05 47.4 19.5 61 172-234 99-160 (451)
340 PRK05703 flhF flagellar biosyn 95.0 0.084 1.8E-06 60.9 8.9 87 173-262 221-308 (424)
341 PRK07667 uridine kinase; Provi 95.0 0.052 1.1E-06 55.6 6.5 38 162-199 4-43 (193)
342 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.015 3.2E-07 60.5 2.5 24 173-196 29-52 (213)
343 cd02019 NK Nucleoside/nucleoti 94.9 0.023 4.9E-07 46.7 3.1 23 175-197 1-23 (69)
344 COG1419 FlhF Flagellar GTP-bin 94.9 0.21 4.5E-06 55.5 11.2 100 161-263 187-291 (407)
345 PF06745 KaiC: KaiC; InterPro 94.9 0.044 9.6E-07 58.0 6.1 89 173-265 19-127 (226)
346 COG0194 Gmk Guanylate kinase [ 94.9 0.11 2.3E-06 50.9 7.9 25 173-197 4-28 (191)
347 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.07 1.5E-06 54.3 7.3 24 175-198 1-24 (183)
348 COG0563 Adk Adenylate kinase a 94.9 0.047 1E-06 54.5 5.7 24 175-198 2-25 (178)
349 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.5E-07 35.7 0.8 21 560-580 1-21 (22)
350 PF03308 ArgK: ArgK protein; 94.8 0.072 1.6E-06 55.2 7.0 58 160-217 14-73 (266)
351 PRK09519 recA DNA recombinatio 94.8 0.1 2.2E-06 63.7 9.3 86 173-265 60-150 (790)
352 COG1428 Deoxynucleoside kinase 94.8 0.022 4.8E-07 56.7 3.1 48 173-225 4-51 (216)
353 PF07728 AAA_5: AAA domain (dy 94.8 0.066 1.4E-06 51.6 6.4 76 176-265 2-77 (139)
354 TIGR02902 spore_lonB ATP-depen 94.8 0.048 1.1E-06 65.1 6.5 52 146-197 59-110 (531)
355 cd02027 APSK Adenosine 5'-phos 94.8 0.099 2.1E-06 50.9 7.6 24 175-198 1-24 (149)
356 PF00485 PRK: Phosphoribulokin 94.7 0.027 5.8E-07 57.9 3.8 25 175-199 1-25 (194)
357 PF01583 APS_kinase: Adenylyls 94.7 0.046 1E-06 52.7 5.0 36 173-210 2-37 (156)
358 PRK05342 clpX ATP-dependent pr 94.7 0.065 1.4E-06 61.3 7.0 45 154-198 73-133 (412)
359 PRK06995 flhF flagellar biosyn 94.6 0.17 3.7E-06 58.7 10.2 88 173-263 256-344 (484)
360 PRK14721 flhF flagellar biosyn 94.6 0.21 4.5E-06 57.0 10.7 87 173-262 191-278 (420)
361 PRK10463 hydrogenase nickel in 94.6 0.3 6.6E-06 52.4 11.3 34 165-198 96-129 (290)
362 PF10236 DAP3: Mitochondrial r 94.6 0.98 2.1E-05 49.9 15.8 46 310-355 258-305 (309)
363 PRK00889 adenylylsulfate kinas 94.6 0.12 2.6E-06 52.1 8.1 28 172-199 3-30 (175)
364 cd01135 V_A-ATPase_B V/A-type 94.6 0.25 5.4E-06 52.5 10.4 93 173-265 69-178 (276)
365 PF12775 AAA_7: P-loop contain 94.6 0.035 7.7E-07 59.9 4.3 89 161-265 22-112 (272)
366 KOG3347 Predicted nucleotide k 94.6 0.06 1.3E-06 49.9 5.0 69 173-251 7-75 (176)
367 COG1703 ArgK Putative periplas 94.6 0.093 2E-06 55.1 7.0 61 161-221 37-99 (323)
368 COG3640 CooC CO dehydrogenase 94.5 0.078 1.7E-06 53.6 6.2 51 175-233 2-52 (255)
369 PTZ00301 uridine kinase; Provi 94.5 0.034 7.5E-07 57.2 3.9 26 173-198 3-28 (210)
370 TIGR02858 spore_III_AA stage I 94.5 0.12 2.5E-06 55.6 8.0 127 162-302 99-233 (270)
371 PRK05480 uridine/cytidine kina 94.5 0.035 7.7E-07 57.9 4.0 27 171-197 4-30 (209)
372 cd00561 CobA_CobO_BtuR ATP:cor 94.5 0.11 2.3E-06 50.5 6.9 117 174-299 3-139 (159)
373 cd03214 ABC_Iron-Siderophores_ 94.5 0.14 3E-06 51.9 8.1 121 172-301 24-161 (180)
374 PRK11608 pspF phage shock prot 94.5 0.064 1.4E-06 60.0 6.2 61 152-214 6-68 (326)
375 PF13671 AAA_33: AAA domain; P 94.5 0.033 7.2E-07 54.0 3.5 24 175-198 1-24 (143)
376 COG4088 Predicted nucleotide k 94.5 0.12 2.7E-06 50.8 7.1 26 174-199 2-27 (261)
377 PRK05439 pantothenate kinase; 94.4 0.21 4.6E-06 54.4 9.9 45 171-215 84-128 (311)
378 PRK13765 ATP-dependent proteas 94.4 0.077 1.7E-06 64.0 7.1 81 147-231 26-106 (637)
379 PF00006 ATP-synt_ab: ATP synt 94.4 0.21 4.6E-06 51.5 9.4 97 164-265 5-117 (215)
380 PRK08233 hypothetical protein; 94.4 0.034 7.4E-07 56.6 3.7 26 173-198 3-28 (182)
381 KOG0726 26S proteasome regulat 94.4 0.14 3.1E-06 52.8 7.7 53 146-198 179-244 (440)
382 PRK14723 flhF flagellar biosyn 94.4 0.29 6.2E-06 59.8 11.6 88 173-263 185-273 (767)
383 KOG0735 AAA+-type ATPase [Post 94.3 0.2 4.3E-06 58.5 9.6 95 150-265 665-772 (952)
384 PRK06762 hypothetical protein; 94.3 0.039 8.5E-07 55.1 3.8 24 174-197 3-26 (166)
385 PF13245 AAA_19: Part of AAA d 94.3 0.1 2.3E-06 43.6 5.6 26 172-197 9-35 (76)
386 KOG0738 AAA+-type ATPase [Post 94.3 0.15 3.3E-06 55.2 8.1 25 174-198 246-270 (491)
387 PF00910 RNA_helicase: RNA hel 94.3 0.035 7.5E-07 50.5 3.0 23 176-198 1-23 (107)
388 TIGR00235 udk uridine kinase. 94.3 0.04 8.8E-07 57.3 3.9 28 171-198 4-31 (207)
389 TIGR01360 aden_kin_iso1 adenyl 94.3 0.04 8.8E-07 56.4 3.8 26 172-197 2-27 (188)
390 PRK12597 F0F1 ATP synthase sub 94.2 0.28 6E-06 56.6 10.7 92 173-265 143-249 (461)
391 COG4608 AppF ABC-type oligopep 94.2 0.14 2.9E-06 53.6 7.4 122 172-302 38-174 (268)
392 TIGR00390 hslU ATP-dependent p 94.2 0.12 2.7E-06 57.8 7.6 45 154-198 14-72 (441)
393 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.39 8.4E-06 50.9 11.4 40 173-214 20-59 (229)
394 PRK03839 putative kinase; Prov 94.2 0.04 8.6E-07 55.9 3.6 24 175-198 2-25 (180)
395 PF08433 KTI12: Chromatin asso 94.2 0.13 2.8E-06 55.3 7.6 26 174-199 2-27 (270)
396 PF03205 MobB: Molybdopterin g 94.2 0.09 1.9E-06 50.3 5.7 39 174-213 1-39 (140)
397 KOG0927 Predicted transporter 94.2 0.28 6E-06 55.8 10.1 96 173-268 416-542 (614)
398 TIGR02655 circ_KaiC circadian 94.2 0.15 3.3E-06 60.4 8.9 88 172-264 262-364 (484)
399 cd03228 ABCC_MRP_Like The MRP 94.1 0.1 2.2E-06 52.4 6.3 27 172-198 27-53 (171)
400 PRK12678 transcription termina 94.1 0.089 1.9E-06 60.7 6.4 92 173-265 416-515 (672)
401 COG0572 Udk Uridine kinase [Nu 94.1 0.046 1E-06 55.3 3.7 27 172-198 7-33 (218)
402 KOG0737 AAA+-type ATPase [Post 94.1 0.69 1.5E-05 50.3 12.4 30 172-203 126-155 (386)
403 KOG2170 ATPase of the AAA+ sup 94.1 0.2 4.2E-06 52.6 8.1 98 154-265 84-190 (344)
404 cd03216 ABC_Carb_Monos_I This 94.1 0.1 2.2E-06 51.8 6.0 116 172-301 25-145 (163)
405 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.16 3.4E-06 49.2 7.1 104 172-302 25-131 (144)
406 PRK05973 replicative DNA helic 94.0 0.35 7.7E-06 50.6 10.1 48 173-224 64-111 (237)
407 PRK05022 anaerobic nitric oxid 94.0 0.14 3E-06 61.3 8.2 63 151-215 186-250 (509)
408 PRK00625 shikimate kinase; Pro 94.0 0.044 9.6E-07 54.5 3.3 24 175-198 2-25 (173)
409 cd03247 ABCC_cytochrome_bd The 94.0 0.14 3E-06 51.8 7.0 26 173-198 28-53 (178)
410 PRK11823 DNA repair protein Ra 94.0 0.11 2.3E-06 60.6 7.0 87 173-264 80-167 (446)
411 COG0467 RAD55 RecA-superfamily 94.0 0.15 3.3E-06 55.1 7.8 56 171-231 21-76 (260)
412 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.33 7.2E-06 55.5 10.5 92 173-265 138-244 (449)
413 cd01122 GP4d_helicase GP4d_hel 93.9 0.37 8.1E-06 52.6 10.8 52 173-227 30-81 (271)
414 PF07726 AAA_3: ATPase family 93.9 0.035 7.6E-07 50.9 2.1 27 176-204 2-28 (131)
415 PRK09280 F0F1 ATP synthase sub 93.9 0.41 8.8E-06 55.0 11.0 92 173-265 144-250 (463)
416 PRK05917 DNA polymerase III su 93.9 0.92 2E-05 48.9 13.1 39 160-198 5-44 (290)
417 PRK04040 adenylate kinase; Pro 93.8 0.054 1.2E-06 54.9 3.7 25 174-198 3-27 (188)
418 PF05970 PIF1: PIF1-like helic 93.8 0.12 2.5E-06 59.0 6.7 41 159-199 8-48 (364)
419 TIGR01039 atpD ATP synthase, F 93.8 0.45 9.8E-06 54.4 11.2 92 173-265 143-249 (461)
420 PRK10416 signal recognition pa 93.8 0.5 1.1E-05 52.3 11.3 39 172-212 113-151 (318)
421 cd03283 ABC_MutS-like MutS-lik 93.7 0.12 2.6E-06 53.1 5.9 24 174-197 26-49 (199)
422 TIGR01313 therm_gnt_kin carboh 93.7 0.11 2.5E-06 51.5 5.7 22 176-197 1-22 (163)
423 cd00544 CobU Adenosylcobinamid 93.7 0.22 4.7E-06 49.4 7.5 82 176-264 2-84 (169)
424 PTZ00088 adenylate kinase 1; P 93.6 0.12 2.7E-06 54.0 6.0 23 176-198 9-31 (229)
425 PRK14529 adenylate kinase; Pro 93.6 0.22 4.7E-06 51.7 7.6 83 176-264 3-87 (223)
426 PF00625 Guanylate_kin: Guanyl 93.6 0.084 1.8E-06 53.7 4.6 38 173-212 2-39 (183)
427 COG1936 Predicted nucleotide k 93.6 0.057 1.2E-06 51.9 3.0 20 175-194 2-21 (180)
428 cd01125 repA Hexameric Replica 93.6 0.32 6.9E-06 51.9 9.2 54 175-228 3-67 (239)
429 TIGR00416 sms DNA repair prote 93.6 0.16 3.6E-06 59.1 7.5 87 173-264 94-181 (454)
430 PRK13768 GTPase; Provisional 93.6 0.3 6.6E-06 52.3 9.0 37 174-212 3-39 (253)
431 PRK09435 membrane ATPase/prote 93.6 0.62 1.3E-05 51.6 11.5 51 161-213 42-94 (332)
432 PRK10751 molybdopterin-guanine 93.5 0.081 1.8E-06 52.2 4.2 28 172-199 5-32 (173)
433 COG0396 sufC Cysteine desulfur 93.5 0.17 3.7E-06 51.1 6.3 26 172-197 29-54 (251)
434 TIGR02329 propionate_PrpR prop 93.5 0.46 9.9E-06 56.5 11.1 47 151-197 211-259 (526)
435 PRK08972 fliI flagellum-specif 93.5 0.36 7.8E-06 54.9 9.6 89 173-265 162-264 (444)
436 PRK00131 aroK shikimate kinase 93.5 0.072 1.6E-06 53.7 3.9 26 173-198 4-29 (175)
437 COG0003 ArsA Predicted ATPase 93.3 0.14 3.1E-06 56.0 6.1 49 173-223 2-50 (322)
438 KOG3864 Uncharacterized conser 93.3 0.024 5.1E-07 55.7 0.0 68 799-872 123-190 (221)
439 PF13479 AAA_24: AAA domain 93.3 0.23 5E-06 51.8 7.4 31 174-214 4-34 (213)
440 cd02029 PRK_like Phosphoribulo 93.3 0.35 7.7E-06 50.9 8.6 36 175-212 1-36 (277)
441 TIGR00382 clpX endopeptidase C 93.3 0.24 5.2E-06 56.4 8.0 45 154-198 79-141 (413)
442 TIGR00150 HI0065_YjeE ATPase, 93.3 0.16 3.5E-06 47.5 5.5 28 172-199 21-48 (133)
443 TIGR00750 lao LAO/AO transport 93.3 0.33 7.2E-06 53.6 9.0 30 171-200 32-61 (300)
444 cd02024 NRK1 Nicotinamide ribo 93.2 0.064 1.4E-06 53.9 3.0 23 175-197 1-23 (187)
445 PRK14531 adenylate kinase; Pro 93.2 0.12 2.7E-06 52.4 5.1 25 174-198 3-27 (183)
446 cd03287 ABC_MSH3_euk MutS3 hom 93.2 0.056 1.2E-06 56.2 2.6 124 172-303 30-159 (222)
447 PF13504 LRR_7: Leucine rich r 93.2 0.059 1.3E-06 30.1 1.5 16 605-620 2-17 (17)
448 PRK06002 fliI flagellum-specif 93.2 0.24 5.3E-06 56.5 7.8 90 173-265 165-266 (450)
449 TIGR02322 phosphon_PhnN phosph 93.2 0.078 1.7E-06 53.7 3.6 25 174-198 2-26 (179)
450 PRK06731 flhF flagellar biosyn 93.2 0.59 1.3E-05 50.1 10.2 90 172-264 74-165 (270)
451 COG1224 TIP49 DNA helicase TIP 93.2 0.17 3.8E-06 54.1 6.0 53 152-204 39-96 (450)
452 cd00227 CPT Chloramphenicol (C 93.1 0.085 1.8E-06 53.2 3.8 25 174-198 3-27 (175)
453 cd02020 CMPK Cytidine monophos 93.1 0.071 1.5E-06 52.0 3.1 24 175-198 1-24 (147)
454 cd01134 V_A-ATPase_A V/A-type 93.1 0.69 1.5E-05 50.7 10.7 97 164-264 147-265 (369)
455 cd02023 UMPK Uridine monophosp 93.1 0.064 1.4E-06 55.4 2.9 23 175-197 1-23 (198)
456 PF13604 AAA_30: AAA domain; P 93.1 0.24 5.1E-06 50.8 7.0 38 163-200 8-45 (196)
457 cd03223 ABCD_peroxisomal_ALDP 93.1 0.26 5.7E-06 49.0 7.1 27 172-198 26-52 (166)
458 PRK06217 hypothetical protein; 93.0 0.078 1.7E-06 53.9 3.3 34 175-209 3-38 (183)
459 PRK13949 shikimate kinase; Pro 93.0 0.089 1.9E-06 52.4 3.6 24 175-198 3-26 (169)
460 PRK14530 adenylate kinase; Pro 93.0 0.087 1.9E-06 55.2 3.7 25 174-198 4-28 (215)
461 TIGR02030 BchI-ChlI magnesium 93.0 0.15 3.2E-06 56.7 5.6 47 151-197 3-49 (337)
462 PRK08149 ATP synthase SpaL; Va 93.0 0.34 7.4E-06 55.2 8.5 90 172-265 150-253 (428)
463 PRK15453 phosphoribulokinase; 92.9 0.63 1.4E-05 49.5 9.8 28 171-198 3-30 (290)
464 CHL00081 chlI Mg-protoporyphyr 92.9 0.13 2.9E-06 57.0 5.1 49 150-198 15-63 (350)
465 PF02374 ArsA_ATPase: Anion-tr 92.9 0.15 3.2E-06 56.1 5.5 46 174-221 2-47 (305)
466 COG0529 CysC Adenylylsulfate k 92.9 0.16 3.5E-06 48.9 4.8 31 170-200 20-50 (197)
467 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.25 5.5E-06 48.7 6.6 115 173-302 25-144 (157)
468 cd02028 UMPK_like Uridine mono 92.9 0.12 2.7E-06 52.0 4.5 25 175-199 1-25 (179)
469 PF03266 NTPase_1: NTPase; In 92.8 0.11 2.3E-06 51.6 3.8 24 176-199 2-25 (168)
470 cd02021 GntK Gluconate kinase 92.8 0.078 1.7E-06 51.9 2.9 23 175-197 1-23 (150)
471 PF13086 AAA_11: AAA domain; P 92.8 0.19 4.2E-06 53.5 6.2 23 175-197 19-41 (236)
472 cd01132 F1_ATPase_alpha F1 ATP 92.8 0.65 1.4E-05 49.4 9.7 89 173-265 69-173 (274)
473 CHL00206 ycf2 Ycf2; Provisiona 92.8 0.5 1.1E-05 62.3 10.4 26 173-198 1630-1655(2281)
474 PRK13947 shikimate kinase; Pro 92.8 0.09 2E-06 52.8 3.4 24 175-198 3-26 (171)
475 PRK13407 bchI magnesium chelat 92.8 0.14 3.1E-06 56.7 5.1 49 149-197 5-53 (334)
476 TIGR02655 circ_KaiC circadian 92.7 0.39 8.5E-06 57.0 9.1 55 172-230 20-74 (484)
477 PTZ00185 ATPase alpha subunit; 92.7 0.5 1.1E-05 54.2 9.3 92 173-265 189-301 (574)
478 PF00142 Fer4_NifH: 4Fe-4S iro 92.7 0.19 4.1E-06 52.3 5.5 41 174-216 1-41 (273)
479 cd00071 GMPK Guanosine monopho 92.7 0.082 1.8E-06 50.6 2.8 23 176-198 2-24 (137)
480 cd00984 DnaB_C DnaB helicase C 92.7 0.52 1.1E-05 50.5 9.4 50 173-225 13-62 (242)
481 cd03243 ABC_MutS_homologs The 92.7 0.046 1E-06 56.6 1.1 23 174-196 30-52 (202)
482 PRK08927 fliI flagellum-specif 92.7 0.76 1.7E-05 52.6 10.8 90 172-265 157-260 (442)
483 PRK06851 hypothetical protein; 92.7 0.96 2.1E-05 50.6 11.4 44 170-214 211-254 (367)
484 TIGR00708 cobA cob(I)alamin ad 92.7 0.4 8.7E-06 47.1 7.5 118 173-299 5-141 (173)
485 TIGR00176 mobB molybdopterin-g 92.7 0.11 2.4E-06 50.8 3.7 34 175-209 1-34 (155)
486 TIGR01040 V-ATPase_V1_B V-type 92.7 0.68 1.5E-05 52.8 10.2 93 173-265 141-259 (466)
487 PRK05201 hslU ATP-dependent pr 92.6 0.32 6.9E-06 54.7 7.5 45 154-198 17-75 (443)
488 TIGR01287 nifH nitrogenase iro 92.6 0.19 4.1E-06 55.0 5.8 41 174-216 1-41 (275)
489 PF00158 Sigma54_activat: Sigm 92.6 0.2 4.3E-06 49.7 5.3 57 155-213 2-60 (168)
490 COG0714 MoxR-like ATPases [Gen 92.5 0.29 6.3E-06 55.0 7.4 64 154-224 26-89 (329)
491 TIGR00073 hypB hydrogenase acc 92.5 0.13 2.8E-06 53.5 4.2 32 167-198 16-47 (207)
492 TIGR03263 guanyl_kin guanylate 92.5 0.094 2E-06 53.2 3.0 24 174-197 2-25 (180)
493 COG1763 MobB Molybdopterin-gua 92.4 0.13 2.7E-06 50.0 3.6 36 173-210 2-37 (161)
494 PRK03846 adenylylsulfate kinas 92.4 0.19 4.1E-06 51.8 5.2 29 170-198 21-49 (198)
495 KOG1051 Chaperone HSP104 and r 92.4 0.57 1.2E-05 57.8 9.9 102 154-266 564-673 (898)
496 cd00464 SK Shikimate kinase (S 92.4 0.11 2.4E-06 51.1 3.4 23 176-198 2-24 (154)
497 TIGR00764 lon_rel lon-related 92.4 0.26 5.7E-06 59.8 7.1 77 150-230 16-92 (608)
498 TIGR03880 KaiC_arch_3 KaiC dom 92.4 0.62 1.4E-05 49.1 9.3 40 173-214 16-55 (224)
499 TIGR01420 pilT_fam pilus retra 92.4 0.15 3.3E-06 57.4 4.8 91 172-270 121-212 (343)
500 COG1124 DppF ABC-type dipeptid 92.4 0.13 2.8E-06 52.5 3.7 27 172-198 32-58 (252)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-82 Score=762.89 Aligned_cols=585 Identities=25% Similarity=0.405 Sum_probs=467.2
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhHHHHHHhhhhhhhccccc----
Q 000975 17 VVELLFDPIREEISYVCKYQSNVKELKNVGERVEQAVKHADRQGDDIFSDVQEWLTKFDEWTKRVGNAVVEDEGED---- 92 (1205)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~~~~ed~~~~~~~~---- 92 (1205)
.++++.+.+.++...+.++++.+..|++.+..++.++++|+++. .....+..|...+++++| ++||.++.+...
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~-~~e~~~~~~~v~~~~~ 85 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVY-LAEDIIWLFLVEEIER 85 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34556667778899999999999999999999999999999984 447789999999999999 999987643210
Q ss_pred ----ccc-c----cccccccccc-ccchhchhhHHHHHHHHHHHHHHhcccccCCC---CCC-cccccccCCccccCCCh
Q 000975 93 ----EAN-K----KRCTFKDLCS-KMMTRYRLSKEAAKAAREGNIILQRQNVGHRP---DPE-TMERFSVRGYVHFPSRN 158 (1205)
Q Consensus 93 ----~~~-~----~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~---~~~-~~~~~~~~~~~~~~gr~ 158 (1205)
... + .+-++...+. ....-+.+++++-++.+.++.+..++.+.... .+. ..+..+...... ||.+
T Consensus 86 ~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e 164 (889)
T KOG4658|consen 86 KANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLE 164 (889)
T ss_pred HHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHH
Confidence 000 0 0011112222 22334556677777777777775544221111 111 122223333333 9999
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh-hcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-
Q 000975 159 PVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV-KEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD- 236 (1205)
Q Consensus 159 ~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~- 236 (1205)
..++++.+.|.+++..+++|+||||+||||||+.++++.. ++.+||.++||.||+.++...++++|++.++.......
T Consensus 165 ~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~ 244 (889)
T KOG4658|consen 165 TMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWED 244 (889)
T ss_pred HHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccch
Confidence 9999999999987779999999999999999999999988 89999999999999999999999999999987544332
Q ss_pred -CHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHHhhcCCCCceEEccC
Q 000975 237 -SLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRIFSIST 315 (1205)
Q Consensus 237 -~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~~~~~~~~l~~ 315 (1205)
...+.+..+.+.|. ++||+||+||||+..+|+.++.++|. ...||+|++|||+..|+..++++...++++.
T Consensus 245 ~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 245 KEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred hhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 23566777888887 69999999999999999999999998 7789999999999999985688899999999
Q ss_pred CChHhHHHHHHHHhCCCC--CCCchHHHHHHHHHhcCCChHHHHHHHHHhcCC-CchHHHHHHHHHHhcCCCcccccccc
Q 000975 316 LADGEAKSLFEKIVGDSA--KESDCRAIGVEIVGKCGGLPIAVSTIANALKGQ-STHVWKDAINWLRKSNPRKIKGMDAD 392 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~ 392 (1205)
|+++|||.||++.++... ..+..+++|++|+++|+|+|||+.++|+.|+.+ +..+|+++.+.+........+++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999997643 334589999999999999999999999999999 77899999998877643344444444
Q ss_pred -hhhHHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhHHHHHHHHHHHHHhhccccccccCC--
Q 000975 393 -LSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGD-- 469 (1205)
Q Consensus 393 -~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-- 469 (1205)
++++++||++||+++|.||+|||+||+||+|+++.||.+|+||| |+.+....+.+++.+++++.+|++++++...+
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEG-fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEG-FIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhcc-CcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999999999999999999999999999999 77766666778888899999999999998764
Q ss_pred -CCCcEEEehHHHHHHHHHhc-----cccEEEEccCcchhHHHHHHhcCCCcEEEccCCCCCCCCCccCCCcceEEEeec
Q 000975 470 -TEDHVKMHQIIHALAVLIAS-----DKLLFNIQNVADVKEEVEKAARKNPTAISIPFRDISELPDSLQCTRLKLFLLFT 543 (1205)
Q Consensus 470 -~~~~~~mHdlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~ 543 (1205)
...+|+|||+||++|.++|+ +++++ +..+.+..+.+....+..+|++++.++.+..++....+++|++|.+..
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 34689999999999999999 66633 444434444555566778999999999999999999999999999999
Q ss_pred CCC-CCCCChhhhhCCCceeEEEeeCCC-CCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccC
Q 000975 544 EDS-SLQIPNQFFDGMTELLVLHLTGIH-FPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNS 614 (1205)
Q Consensus 544 n~~-~~~~~~~~~~~l~~Lr~L~Ls~~~-i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~ 614 (1205)
|.. ...++..+|..++.||+|||++|. +..+|++|++|.|||||+|+++.++. |..+++|+.|.+||+..+
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 973 447888999999999999999764 56788877777777777777665554 444555555555544444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-63 Score=638.24 Aligned_cols=720 Identities=19% Similarity=0.279 Sum_probs=486.2
Q ss_pred CCccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEe---cCCC--------
Q 000975 149 RGYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV---THTP-------- 215 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-------- 215 (1205)
....+++||+..++++..++. .++.++|+||||||+||||||+++|+... .+|++.+|+.. +...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 345678999999999998885 45689999999999999999999999876 78988888742 1110
Q ss_pred ---C-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEE
Q 000975 216 ---D-WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTL 291 (1205)
Q Consensus 216 ---~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~i 291 (1205)
+ ...++++++.++......... ....+++.+. ++|+||||||||+..+|+.+...... .++||+|
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrI 327 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRI 327 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEE
Confidence 1 122344444443221111101 1234566665 69999999999999999887554332 4689999
Q ss_pred EEecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCC-CCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchH
Q 000975 292 LLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDS-AKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHV 370 (1205)
Q Consensus 292 lvTTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~ 370 (1205)
|||||++.++. ..+..++|+++.++++|||+||+++|+.. .+++++.+++++|+++|+|+|||++++|++|++++..+
T Consensus 328 IiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 328 IVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 99999999987 46677899999999999999999999643 34456789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccccccchhhHHhhhhcCcH-HHHHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhHHHHH
Q 000975 371 WKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEP-EAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVAR 449 (1205)
Q Consensus 371 w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 449 (1205)
|++++++++... ..+..+++++||+.|++ ..|.||+++|+|+.+..++ .+..|.+.+ ....
T Consensus 407 W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~-~~~~-------- 468 (1153)
T PLN03210 407 WMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANS-DLDV-------- 468 (1153)
T ss_pred HHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhc-CCCc--------
Confidence 999999987643 12348999999999987 5999999999998876554 466777766 2211
Q ss_pred HHHHHHHHhhccccccccCCCCCcEEEehHHHHHHHHHhccccE------EEEccCcchhH-HHHHHhcCCCcEEEccCC
Q 000975 450 NRVYTLMDHLKGPCLLLNGDTEDHVKMHQIIHALAVLIASDKLL------FNIQNVADVKE-EVEKAARKNPTAISIPFR 522 (1205)
Q Consensus 450 ~~~~~~~~~L~~~~l~~~~~~~~~~~mHdlv~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~r~lsl~~~ 522 (1205)
...++.|++++|++.. .+.++|||++|++|+.+++++.- +.+... .... .....-.+.++.+++...
T Consensus 469 ---~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 ---NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ---hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccC
Confidence 1137789999999775 45799999999999999875520 111100 0000 011112356677777655
Q ss_pred CCCCCC--C-cc-CCCcceEEEeecCC------CCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCC
Q 000975 523 DISELP--D-SL-QCTRLKLFLLFTED------SSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 523 ~~~~l~--~-~~-~~~~Lr~L~l~~n~------~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 592 (1205)
.+..+. . .+ ++++|+.|.+..+. ....+|.++..-..+||.|++.++.+..+|..+ ...+|+.|++.+|
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS 621 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc
Confidence 554321 1 11 67788888776543 223456555333356888888888888888776 4678888888888
Q ss_pred cCCC-CccccccccCcEEEcccC-CCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcC-ccccC
Q 000975 593 HLED-VARVGDLAKLEILSFRNS-HIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT-RKVEG 669 (1205)
Q Consensus 593 ~l~~-~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~-~~~~~ 669 (1205)
.+.. +..+..+++|++|+|+++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|++|++++|.. ..+|.
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCC
Confidence 8777 667777888888888776 466676 4777888888888888777777765 77888888888877632 22221
Q ss_pred CCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhh
Q 000975 670 QSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKT 749 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~ 749 (1205)
.+ ++++|+.|+++ +
T Consensus 700 -------~i-~l~sL~~L~Ls-----------------g----------------------------------------- 713 (1153)
T PLN03210 700 -------GI-NLKSLYRLNLS-----------------G----------------------------------------- 713 (1153)
T ss_pred -------cC-CCCCCCEEeCC-----------------C-----------------------------------------
Confidence 01 34444444433 2
Q ss_pred hchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccccc-cccc
Q 000975 750 TEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQL-TEDN 828 (1205)
Q Consensus 750 L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~ 828 (1205)
|.....++ ...++|+.|++.++. ++.++.. ..+++|+.|.+.++....-+. ..... ....
T Consensus 714 --------c~~L~~~p------~~~~nL~~L~L~~n~-i~~lP~~---~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~ 774 (1153)
T PLN03210 714 --------CSRLKSFP------DISTNISWLDLDETA-IEEFPSN---LRLENLDELILCEMKSEKLWE-RVQPLTPLMT 774 (1153)
T ss_pred --------CCCccccc------cccCCcCeeecCCCc-ccccccc---ccccccccccccccchhhccc-cccccchhhh
Confidence 11111100 011233344443332 2222111 123344444443322111000 00000 0001
Q ss_pred ccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcc
Q 000975 829 RSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQL 908 (1205)
Q Consensus 829 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 908 (1205)
..+++|+.|++++|+.+..+|. .++++++|+.|+|++|..++.++.. ..+++|+.|++++|.++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~--------------~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTG--------------INLESLESLDLSGCSRL 838 (1153)
T ss_pred hccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCC--------------CCccccCEEECCCCCcc
Confidence 2357899999999998888876 3688999999999999998887632 35789999999999988
Q ss_pred cccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcc
Q 000975 909 TSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLK 988 (1205)
Q Consensus 909 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~ 988 (1205)
..++. ..++|+.|+|++|.+++++.. ...+++|+.|++++|++++
T Consensus 839 ~~~p~------------------------------~~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 839 RTFPD------------------------------ISTNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ccccc------------------------------cccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcC
Confidence 77654 146899999999998876543 2378999999999999999
Q ss_pred cccchhhHHhhccccEEEEccccccccccccccccc----cccccccccccceeccccCCCcc
Q 000975 989 FLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGRE----ENLIEMVFPKLVYLSLSHLPQLS 1047 (1205)
Q Consensus 989 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~----~~~~~~~~~~L~~L~l~~c~~L~ 1047 (1205)
.+|. ....+++|+.|++++|.+++.+........ .......+|....+.+.+|.+|.
T Consensus 884 ~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 884 RVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccCc--ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9865 356789999999999999986643111000 00011234455556666776654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.8e-41 Score=373.63 Aligned_cols=275 Identities=31% Similarity=0.508 Sum_probs=220.9
Q ss_pred ChHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-
Q 000975 157 RNPVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV- 233 (1205)
Q Consensus 157 r~~~~~~l~~~l~~--~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 233 (1205)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|++++...+..+++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 788999999999999999999999997778999999999999999999999999999988843
Q ss_pred --CCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHHhhcCCCCceE
Q 000975 234 --RPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRIF 311 (1205)
Q Consensus 234 --~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~~~~~~~ 311 (1205)
......+....+.+.+. ++++||||||||+...|+.+...++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 23466777888888887 57999999999999999888776665 567999999999999886322236799
Q ss_pred EccCCChHhHHHHHHHHhCCCC--CCCchHHHHHHHHHhcCCChHHHHHHHHHhcCC-CchHHHHHHHHHHhcCCCcccc
Q 000975 312 SISTLADGEAKSLFEKIVGDSA--KESDCRAIGVEIVGKCGGLPIAVSTIANALKGQ-STHVWKDAINWLRKSNPRKIKG 388 (1205)
Q Consensus 312 ~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~ 388 (1205)
++++|+++||++||.+.++... ..+..++.+++|+++|+|+||||.++|++|+.+ +..+|+++++++..........
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999996543 345567889999999999999999999999666 7889999999887654211111
Q ss_pred cccchhhHHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHcccccc
Q 000975 389 MDADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFT 440 (1205)
Q Consensus 389 ~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~ 440 (1205)
......++.+||+.||+++|+||+|||+||+++.|+++.++++|+++| +++
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~-~i~ 283 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEG-FIS 283 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H-HTC
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCC-CCc
Confidence 223389999999999999999999999999999999999999999999 554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-34 Score=373.84 Aligned_cols=508 Identities=19% Similarity=0.194 Sum_probs=338.9
Q ss_pred CCCcEEEccCCCCCCC-CCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-CcccccCCCcCCcEEE
Q 000975 512 KNPTAISIPFRDISEL-PDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLS 588 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l-~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~ 588 (1205)
.+++.|+++++.+... +..+ .+++|++|++++|.+.+.+|.++|..+++||+|+|++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 3688899998887543 3333 89999999999999998999999889999999999999987 4554 5789999999
Q ss_pred ccCCcCCC--CccccccccCcEEEcccCCCC-ccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 589 FDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 589 L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 99999875 788999999999999999886 78999999999999999998755556654 999999999999988765
Q ss_pred c-ccCCCccchHhhccCCCCcEEEEec-------chhhhccccccccccccceEEEccccccCCccCccceEEeeccCcc
Q 000975 666 K-VEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSI 737 (1205)
Q Consensus 666 ~-~~~~~~~~l~~L~~L~~L~~L~l~~-------~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~ 737 (1205)
. ++ ..+.++++|+.|+++. +..+..+++|+.+++++|.+
T Consensus 226 ~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-------------------------- 272 (968)
T PLN00113 226 GEIP-------YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-------------------------- 272 (968)
T ss_pred CcCC-------hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee--------------------------
Confidence 2 23 4677888888887752 12222333344444444332
Q ss_pred cchhhHHHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccce
Q 000975 738 YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKV 817 (1205)
Q Consensus 738 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 817 (1205)
....+..+ ..+++|++|++++|.-...++. ....+++|+.|++.++.-....
T Consensus 273 -----------------------~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 273 -----------------------SGPIPPSI---FSLQKLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred -----------------------eccCchhH---hhccCcCEEECcCCeeccCCCh--hHcCCCCCcEEECCCCccCCcC
Confidence 21222222 3344455555544421111110 1122344444444432211111
Q ss_pred eccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeecccc
Q 000975 818 CGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHL 897 (1205)
Q Consensus 818 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 897 (1205)
+ .....+++|+.|++++|.-...+|. .+..+++|+.|++++|.....++.. +..+++|
T Consensus 325 ~-------~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~~-------------~~~~~~L 382 (968)
T PLN00113 325 P-------VALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIPEG-------------LCSSGNL 382 (968)
T ss_pred C-------hhHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCChh-------------HhCcCCC
Confidence 0 0114577788888877753334443 3566778888888876543333211 1334667
Q ss_pred chhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCcc
Q 000975 898 HSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLT 977 (1205)
Q Consensus 898 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~ 977 (1205)
+.|.+.+++-...++. ....+++|+.|++++|++++..+..+. .+++|+
T Consensus 383 ~~L~l~~n~l~~~~p~---------------------------~~~~~~~L~~L~L~~n~l~~~~p~~~~----~l~~L~ 431 (968)
T PLN00113 383 FKLILFSNSLEGEIPK---------------------------SLGACRSLRRVRLQDNSFSGELPSEFT----KLPLVY 431 (968)
T ss_pred CEEECcCCEecccCCH---------------------------HHhCCCCCCEEECcCCEeeeECChhHh----cCCCCC
Confidence 7777766543222221 123478888999998888766555444 678899
Q ss_pred EEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCC
Q 000975 978 ELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVEL 1057 (1205)
Q Consensus 978 ~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l 1057 (1205)
.|++++| +++...+ ..+..+++|+.|++++|.....++. ....++|+.|++++|. +....+..+.++
T Consensus 432 ~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~----------~~~~~~L~~L~ls~n~-l~~~~~~~~~~l 498 (968)
T PLN00113 432 FLDISNN-NLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPD----------SFGSKRLENLDLSRNQ-FSGAVPRKLGSL 498 (968)
T ss_pred EEECcCC-cccCccC-hhhccCCCCcEEECcCceeeeecCc----------ccccccceEEECcCCc-cCCccChhhhhh
Confidence 9999884 5655533 3355788899999988865444432 1135788999998864 433333567788
Q ss_pred CCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEe
Q 000975 1058 PSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHV 1137 (1205)
Q Consensus 1058 ~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i 1137 (1205)
++|+.|++++|.-...+| ..+..+++|++|+|++|.-...++... +.+++|+.|++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p---------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L 554 (968)
T PLN00113 499 SELMQLKLSENKLSGEIP---------------------DELSSCKKLVSLDLSHNQLSGQIPASF---SEMPVLSQLDL 554 (968)
T ss_pred hccCEEECcCCcceeeCC---------------------hHHcCccCCCEEECCCCcccccCChhH---hCcccCCEEEC
Confidence 899999999865443443 345667889999999886444444322 45789999999
Q ss_pred cccccccccccchhHhhccCCcEEEEecCCCceeeeec
Q 000975 1138 EYCDELLNIFPSSMMRSLKKLEHLSVIECESLKEITEK 1175 (1205)
Q Consensus 1138 ~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~~l~~~~~~ 1175 (1205)
++|.-... +|.. +.++++|+.|++++|+-...+|..
T Consensus 555 s~N~l~~~-~p~~-l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 555 SQNQLSGE-IPKN-LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCCccccc-CChh-HhcCcccCEEeccCCcceeeCCCc
Confidence 98765444 6765 678999999999998877677654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-32 Score=355.69 Aligned_cols=517 Identities=19% Similarity=0.161 Sum_probs=365.2
Q ss_pred CCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-CcccccC-CCcCCcEEEccCCcCCCCccccccccCcEEE
Q 000975 533 CTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLG-SLINLRTLSFDCCHLEDVARVGDLAKLEILS 610 (1205)
Q Consensus 533 ~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~-~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~ 610 (1205)
..+++.|++++|.+.+.++.. |..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|.+......+.+++|++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CCcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 357999999999998777655 589999999999999997 7887755 9999999999999988733346799999999
Q ss_pred cccCCCC-ccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEE
Q 000975 611 FRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (1205)
Q Consensus 611 L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l 689 (1205)
+++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.... ...+.++++|+.|++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L 219 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQI------PRELGQMKSLKWIYL 219 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcC------ChHHcCcCCccEEEC
Confidence 9999987 78999999999999999998755566654 999999999999988764221 156777888888776
Q ss_pred ecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhc
Q 000975 690 HIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELD 769 (1205)
Q Consensus 690 ~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 769 (1205)
+. |.+. +.. +..+ ..+++|++|++.++......+..+
T Consensus 220 ~~-----------------n~l~-~~~-----------------------p~~l-~~l~~L~~L~L~~n~l~~~~p~~l- 256 (968)
T PLN00113 220 GY-----------------NNLS-GEI-----------------------PYEI-GGLTSLNHLDLVYNNLTGPIPSSL- 256 (968)
T ss_pred cC-----------------CccC-CcC-----------------------ChhH-hcCCCCCEEECcCceeccccChhH-
Confidence 52 2210 000 1111 124667777777665444444555
Q ss_pred cCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCccccc
Q 000975 770 NGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLF 849 (1205)
Q Consensus 770 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 849 (1205)
+.+++|++|++++|.-...++. ....+++|+.|+++++.-...++ .....+++|+.|++++|.-...+|
T Consensus 257 --~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p-------~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 257 --GNLKNLQYLFLYQNKLSGPIPP--SIFSLQKLISLDLSDNSLSGEIP-------ELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred --hCCCCCCEEECcCCeeeccCch--hHhhccCcCEEECcCCeeccCCC-------hhHcCCCCCcEEECCCCccCCcCC
Confidence 7889999999998853222221 23456788888888754222211 111467889999999885444444
Q ss_pred chHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccC
Q 000975 850 PSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAE 929 (1205)
Q Consensus 850 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~ 929 (1205)
. .+..+++|+.|++++|.....++. .+..+++|+.|+++++.--..++.
T Consensus 326 ~--~~~~l~~L~~L~L~~n~l~~~~p~-------------~l~~~~~L~~L~Ls~n~l~~~~p~---------------- 374 (968)
T PLN00113 326 V--ALTSLPRLQVLQLWSNKFSGEIPK-------------NLGKHNNLTVLDLSTNNLTGEIPE---------------- 374 (968)
T ss_pred h--hHhcCCCCCEEECcCCCCcCcCCh-------------HHhCCCCCcEEECCCCeeEeeCCh----------------
Confidence 3 457889999999998765433331 124567888888877643222221
Q ss_pred CCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcc
Q 000975 930 DDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQ 1009 (1205)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 1009 (1205)
....+++|+.|++++|++.+..+..+. .+++|+.|++++| +++...+ ..+..+++|+.|++++
T Consensus 375 -----------~~~~~~~L~~L~l~~n~l~~~~p~~~~----~~~~L~~L~L~~n-~l~~~~p-~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 375 -----------GLCSSGNLFKLILFSNSLEGEIPKSLG----ACRSLRRVRLQDN-SFSGELP-SEFTKLPLVYFLDISN 437 (968)
T ss_pred -----------hHhCcCCCCEEECcCCEecccCCHHHh----CCCCCCEEECcCC-EeeeECC-hhHhcCCCCCEEECcC
Confidence 112367899999999988766555443 6789999999986 4543333 4577889999999988
Q ss_pred ccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCCC
Q 000975 1010 CASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYH 1089 (1205)
Q Consensus 1010 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~ 1089 (1205)
|. +..... .....+++|+.|++++|.....++. ....++|+.|++++|.-...+|
T Consensus 438 N~-l~~~~~--------~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~~~L~~L~ls~n~l~~~~~-------------- 492 (968)
T PLN00113 438 NN-LQGRIN--------SRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVP-------------- 492 (968)
T ss_pred Cc-ccCccC--------hhhccCCCCcEEECcCceeeeecCc--ccccccceEEECcCCccCCccC--------------
Confidence 65 332211 0123488999999999766555542 2356889999999865433333
Q ss_pred CCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccchhHhhccCCcEEEEecCCCc
Q 000975 1090 GDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECESL 1169 (1205)
Q Consensus 1090 ~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~~l 1169 (1205)
..+..+++|+.|++++|.-...+|... ..+++|+.|+|++|. ++...|.. ++.+++|++|++++|.-.
T Consensus 493 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 493 -------RKLGSLSELMQLKLSENKLSGEIPDEL---SSCKKLVSLDLSHNQ-LSGQIPAS-FSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred -------hhhhhhhccCEEECcCCcceeeCChHH---cCccCCCEEECCCCc-ccccCChh-HhCcccCCEEECCCCccc
Confidence 345668999999999996554555432 557999999999976 55446764 789999999999998877
Q ss_pred eeeeeccCcccccccccEEEeccCCCCccc
Q 000975 1170 KEITEKADHRKAFSQSISLKLVKLPKLENS 1199 (1205)
Q Consensus 1170 ~~~~~~~~~~~~~~~L~~l~i~~~p~L~~l 1199 (1205)
..+|... ..+++|+.+++++++-...+
T Consensus 561 ~~~p~~l---~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 561 GEIPKNL---GNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred ccCChhH---hcCcccCEEeccCCcceeeC
Confidence 7777654 45788999999888655433
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-25 Score=241.92 Aligned_cols=379 Identities=20% Similarity=0.266 Sum_probs=263.3
Q ss_pred hcCCCcEEEccCCCCCCCCCc----cCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCc
Q 000975 510 ARKNPTAISIPFRDISELPDS----LQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLR 585 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~----~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 585 (1205)
.+-..+-++.+++.+..+... .-.+..++|++++|.++ .+...+|.++++|+.+++.+|.++.+|.......||.
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLE 128 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccccee
Confidence 344556667777766554221 23456788999999887 6666777899999999999999999998777778899
Q ss_pred EEEccCCcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCC
Q 000975 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 586 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
.|+|.+|.|+. -+.+..++.|+.|||+.|.|+++|.. +..=.++++|+|++|. ++.+..+.|..+.+|-+|.+++|
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC
Confidence 99999998887 37788889999999999998888653 5566788999999854 88888788888888888988888
Q ss_pred cCccccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhh
Q 000975 663 FTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYG 742 (1205)
Q Consensus 663 ~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~ 742 (1205)
.+..+|. ..+++|++|+.|++ ..|+|..
T Consensus 208 rittLp~------r~Fk~L~~L~~LdL-----------------nrN~iri----------------------------- 235 (873)
T KOG4194|consen 208 RITTLPQ------RSFKRLPKLESLDL-----------------NRNRIRI----------------------------- 235 (873)
T ss_pred cccccCH------HHhhhcchhhhhhc-----------------cccceee-----------------------------
Confidence 8777663 55566666555443 3444310
Q ss_pred HHHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccc
Q 000975 743 IKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQV 822 (1205)
Q Consensus 743 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 822 (1205)
...+ ...++++|+.|.+..|. +..+. . +.|
T Consensus 236 ----------------------ve~l-tFqgL~Sl~nlklqrN~-I~kL~----D----------------------G~F 265 (873)
T KOG4194|consen 236 ----------------------VEGL-TFQGLPSLQNLKLQRND-ISKLD----D----------------------GAF 265 (873)
T ss_pred ----------------------ehhh-hhcCchhhhhhhhhhcC-ccccc----C----------------------cce
Confidence 0011 12667777777777662 21111 1 111
Q ss_pred ccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhc
Q 000975 823 QLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLAL 902 (1205)
Q Consensus 823 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 902 (1205)
-.+.++++|++..+ ++..+... ++-+|++|+.|+++++ .+..+-
T Consensus 266 ------y~l~kme~l~L~~N-~l~~vn~g-~lfgLt~L~~L~lS~N-aI~rih--------------------------- 309 (873)
T KOG4194|consen 266 ------YGLEKMEHLNLETN-RLQAVNEG-WLFGLTSLEQLDLSYN-AIQRIH--------------------------- 309 (873)
T ss_pred ------eeecccceeecccc-hhhhhhcc-cccccchhhhhccchh-hhheee---------------------------
Confidence 23555666666655 44444332 3456778888888773 222221
Q ss_pred cCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEec
Q 000975 903 RRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVD 982 (1205)
Q Consensus 903 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~ 982 (1205)
..+| ..+++|++|+|++|.++++.++.|. .+..|++|+++
T Consensus 310 -----~d~W-------------------------------sftqkL~~LdLs~N~i~~l~~~sf~----~L~~Le~LnLs 349 (873)
T KOG4194|consen 310 -----IDSW-------------------------------SFTQKLKELDLSSNRITRLDEGSFR----VLSQLEELNLS 349 (873)
T ss_pred -----cchh-------------------------------hhcccceeEeccccccccCChhHHH----HHHHhhhhccc
Confidence 0111 2378889999999999988888776 78899999998
Q ss_pred ccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcce
Q 000975 983 KCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQ 1062 (1205)
Q Consensus 983 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~ 1062 (1205)
. +.+.++. ...+..+++|++|++++ +.+.-.+.. .......+++|+.|.+.+ ++|++++...+.++++|+.
T Consensus 350 ~-Nsi~~l~-e~af~~lssL~~LdLr~-N~ls~~IED-----aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 350 H-NSIDHLA-EGAFVGLSSLHKLDLRS-NELSWCIED-----AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred c-cchHHHH-hhHHHHhhhhhhhcCcC-CeEEEEEec-----chhhhccchhhhheeecC-ceeeecchhhhccCcccce
Confidence 8 7888884 35678889999999976 444433321 112233489999999999 7899999888999999999
Q ss_pred eeeccCcccccccccc
Q 000975 1063 LSINFCPELKRFICAH 1078 (1205)
Q Consensus 1063 L~i~~C~~L~~l~~~~ 1078 (1205)
|++.+ +-+.++.+..
T Consensus 421 LdL~~-NaiaSIq~nA 435 (873)
T KOG4194|consen 421 LDLGD-NAIASIQPNA 435 (873)
T ss_pred ecCCC-Ccceeecccc
Confidence 99988 5565555333
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-26 Score=261.51 Aligned_cols=144 Identities=22% Similarity=0.355 Sum_probs=122.4
Q ss_pred EEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcC
Q 000975 516 AISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHL 594 (1205)
Q Consensus 516 ~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 594 (1205)
+++++...++.+|..+ .-..+..|++..|.+. ..|..+..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence 3556667777777655 4444888888888765 5566677777789999999999999999999999999999999999
Q ss_pred CC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCC
Q 000975 595 ED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 595 ~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
.. |.+++++.+|++|.|.+|.+..+|.++..+++|+.|++++|. ...+|.- +..++.++.+..++|
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 88 899999999999999999999999999999999999999965 7777765 788888888888877
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.5e-23 Score=264.80 Aligned_cols=393 Identities=20% Similarity=0.285 Sum_probs=239.0
Q ss_pred CcceEEEeecCCCC-CCCChhhhhCCCceeEEEeeCCCCC-------CcccccCCCc-CCcEEEccCCcCCC-Ccccccc
Q 000975 534 TRLKLFLLFTEDSS-LQIPNQFFDGMTELLVLHLTGIHFP-------SLPLSLGSLI-NLRTLSFDCCHLED-VARVGDL 603 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~-------~lp~~i~~L~-~Lr~L~L~~~~l~~-~~~i~~L 603 (1205)
.+.+.+.+..+... ..+....|.+|++|++|.+..+... .+|..+..++ +||+|++.++.+.. |..+ ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 34444444333221 2456677899999999999776422 4677787775 59999999999888 6666 67
Q ss_pred ccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc-cccCCCccchHhhccCC
Q 000975 604 AKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR-KVEGQSNASVVELKQLS 682 (1205)
Q Consensus 604 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~ 682 (1205)
.+|++|++++|++..+|.++..+++|+.|++++|..+..+|. ++.+++|++|++++|... .++ ..+.+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-------~si~~L~ 681 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-------SSIQYLN 681 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-------hhhhccC
Confidence 999999999999999999999999999999999887888874 788899999988876421 111 1223333
Q ss_pred CCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCch
Q 000975 683 SLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQ 762 (1205)
Q Consensus 683 ~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 762 (1205)
+|+.|+++ +|...+
T Consensus 682 ~L~~L~L~------------------------------------------------------------------~c~~L~ 695 (1153)
T PLN03210 682 KLEDLDMS------------------------------------------------------------------RCENLE 695 (1153)
T ss_pred CCCEEeCC------------------------------------------------------------------CCCCcC
Confidence 33333222 111111
Q ss_pred hhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecC
Q 000975 763 NIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQC 842 (1205)
Q Consensus 763 ~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 842 (1205)
.++.. ..+++|+.|.+++|..+.. ++ ...++|+.|++.++
T Consensus 696 ~Lp~~----i~l~sL~~L~Lsgc~~L~~--------------------------~p----------~~~~nL~~L~L~~n 735 (1153)
T PLN03210 696 ILPTG----INLKSLYRLNLSGCSRLKS--------------------------FP----------DISTNISWLDLDET 735 (1153)
T ss_pred ccCCc----CCCCCCCEEeCCCCCCccc--------------------------cc----------cccCCcCeeecCCC
Confidence 11100 1234455555554432222 11 11234555555554
Q ss_pred CCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCC
Q 000975 843 HRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGG 922 (1205)
Q Consensus 843 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 922 (1205)
.++.+|.. ..+++|++|.+.+|....-.. .+. .+...
T Consensus 736 -~i~~lP~~---~~l~~L~~L~l~~~~~~~l~~-----------------~~~-----------~l~~~----------- 772 (1153)
T PLN03210 736 -AIEEFPSN---LRLENLDELILCEMKSEKLWE-----------------RVQ-----------PLTPL----------- 772 (1153)
T ss_pred -cccccccc---ccccccccccccccchhhccc-----------------ccc-----------ccchh-----------
Confidence 24444431 134555555555443211000 000 00000
Q ss_pred CcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccc
Q 000975 923 SEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQL 1002 (1205)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L 1002 (1205)
....+++|+.|+|++|.....++..+. ++++|+.|+|++|++++.+|... .+++|
T Consensus 773 ------------------~~~~~~sL~~L~Ls~n~~l~~lP~si~----~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL 827 (1153)
T PLN03210 773 ------------------MTMLSPSLTRLFLSDIPSLVELPSSIQ----NLHKLEHLEIENCINLETLPTGI---NLESL 827 (1153)
T ss_pred ------------------hhhccccchheeCCCCCCccccChhhh----CCCCCCEEECCCCCCcCeeCCCC---Ccccc
Confidence 001246677777777743332333332 67888888888888888876432 57888
Q ss_pred cEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccc
Q 000975 1003 QRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEM 1082 (1205)
Q Consensus 1003 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l 1082 (1205)
+.|++++|..+..++. .+++|+.|++++ +.++.+|. .+..+++|+.|++++|++++.+|
T Consensus 828 ~~L~Ls~c~~L~~~p~------------~~~nL~~L~Ls~-n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~------- 886 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPD------------ISTNISDLNLSR-TGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVS------- 886 (1153)
T ss_pred CEEECCCCCccccccc------------cccccCEeECCC-CCCccChH-HHhcCCCCCEEECCCCCCcCccC-------
Confidence 8888888887766543 256788888887 46666663 56778888888888888888776
Q ss_pred cCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCC----------CCcccCccEEEecccccccc
Q 000975 1083 SSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLA----------SGSFSKLKVLHVEYCDELLN 1145 (1205)
Q Consensus 1083 ~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~----------~~~l~sL~~L~i~~c~~L~~ 1145 (1205)
.....+++|+.|++++|++|+.++....+ ...+++...+.+.+|.+|..
T Consensus 887 --------------~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 887 --------------LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred --------------cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 22345678888888888877655322211 11244556677888877763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=6.8e-25 Score=237.65 Aligned_cols=366 Identities=20% Similarity=0.270 Sum_probs=209.8
Q ss_pred cceEEEeecCCCCC-CCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcc
Q 000975 535 RLKLFLLFTEDSSL-QIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFR 612 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~-~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~ 612 (1205)
-.|-.++++|.++| ..|.++ ..+..++.|.|..+.+..+|+.++.|.+|.+|.+++|++.. ...++.|+.|+.++++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 34445555555552 344444 56666666666666666666666666666666666666555 4556666666666666
Q ss_pred cCCCC--ccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 613 NSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 613 ~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.|+++ .+|..|-+|..|.+|||++|. ++.+|.+ +.+-.++-.|++++|.+..+|. .-
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~IetIPn------~l------------- 145 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIETIPN------SL------------- 145 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccccCCc------hH-------------
Confidence 66554 556666666666666666643 6666554 5666666666666665555542 11
Q ss_pred cchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhcc
Q 000975 691 IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN 770 (1205)
Q Consensus 691 ~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 770 (1205)
+.++..|-+++|++|++. ..++.+
T Consensus 146 ----finLtDLLfLDLS~NrLe--------------------------------------------------~LPPQ~-- 169 (1255)
T KOG0444|consen 146 ----FINLTDLLFLDLSNNRLE--------------------------------------------------MLPPQI-- 169 (1255)
T ss_pred ----HHhhHhHhhhccccchhh--------------------------------------------------hcCHHH--
Confidence 112223334444444321 001111
Q ss_pred CCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCC-Cccccc
Q 000975 771 GEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCH-RLKHLF 849 (1205)
Q Consensus 771 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~l~ 849 (1205)
..+.+|+.|.|++|+- ....+..+ .+|.+|+.|++++-. .+..+|
T Consensus 170 -RRL~~LqtL~Ls~NPL----------------~hfQLrQL-----------------PsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 170 -RRLSMLQTLKLSNNPL----------------NHFQLRQL-----------------PSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred -HHHhhhhhhhcCCChh----------------hHHHHhcC-----------------ccchhhhhhhcccccchhhcCC
Confidence 2334445555555431 00111100 223344444444432 233444
Q ss_pred chHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccC
Q 000975 850 PSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAE 929 (1205)
Q Consensus 850 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~ 929 (1205)
+ .+..+.+|..++++.+ ++..+| .
T Consensus 216 t--sld~l~NL~dvDlS~N-~Lp~vP-------------------------------------e---------------- 239 (1255)
T KOG0444|consen 216 T--SLDDLHNLRDVDLSEN-NLPIVP-------------------------------------E---------------- 239 (1255)
T ss_pred C--chhhhhhhhhcccccc-CCCcch-------------------------------------H----------------
Confidence 4 2445556666666542 222221 1
Q ss_pred CCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcc
Q 000975 930 DDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQ 1009 (1205)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 1009 (1205)
....+++|+.|+|++|.++++....- ...+|++|+++. ++|+.+| +.+..|+.|+.|++.+
T Consensus 240 -----------cly~l~~LrrLNLS~N~iteL~~~~~-----~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 240 -----------CLYKLRNLRRLNLSGNKITELNMTEG-----EWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANN 300 (1255)
T ss_pred -----------HHhhhhhhheeccCcCceeeeeccHH-----HHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhcc
Confidence 11236777888888887777643321 456899999988 7899886 4578889999998855
Q ss_pred ccccc--cccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccCCCC
Q 000975 1010 CASMQ--GIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGN 1087 (1205)
Q Consensus 1010 c~~l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~ 1087 (1205)
+.++ .+++ . +..+..|+.+...+ ++|+-+| .+++.|+.|+.|.++ |+.|.++|
T Consensus 301 -NkL~FeGiPS----G-----IGKL~~Levf~aan-N~LElVP-EglcRC~kL~kL~L~-~NrLiTLP------------ 355 (1255)
T KOG0444|consen 301 -NKLTFEGIPS----G-----IGKLIQLEVFHAAN-NKLELVP-EGLCRCVKLQKLKLD-HNRLITLP------------ 355 (1255)
T ss_pred -CcccccCCcc----c-----hhhhhhhHHHHhhc-cccccCc-hhhhhhHHHHHhccc-ccceeech------------
Confidence 4442 2322 1 12366677777777 6676666 578888999999887 46666655
Q ss_pred CCCCcccccccccccCcceeeeecccccchhhcc
Q 000975 1088 YHGDTQALFDEKVMLPSLEELSIALMRNLRKIWH 1121 (1205)
Q Consensus 1088 ~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 1121 (1205)
+.+..++.|+.|++..+++|..-|.
T Consensus 356 ---------eaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 356 ---------EAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ---------hhhhhcCCcceeeccCCcCccCCCC
Confidence 6667789999999999988865443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=4.2e-26 Score=235.46 Aligned_cols=491 Identities=21% Similarity=0.246 Sum_probs=312.8
Q ss_pred CCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 591 (1205)
.+..+.+++|++..+.... ++..|.+|++++|... .+|+.+ +.+..+..|+.++|.+..+|+.++.+.+|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 4566778888887776655 8899999999999987 788876 889999999999999999999999999999999999
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
|.+.+ +++|+.+..|+.|+..+|++..+|.+++++.+|..|++.+|. +..+|+..+. ++.|++|+...|....+|
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~tlP-- 199 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLETLP-- 199 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhhcCC--
Confidence 99888 899999999999999999999999999999999999999954 8888888555 999999998887777666
Q ss_pred CccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhh
Q 000975 671 SNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (1205)
.+++.+.+|. .++|..|++..- +++. .+..|
T Consensus 200 -----~~lg~l~~L~-----------------~LyL~~Nki~~l--Pef~-------------------------gcs~L 230 (565)
T KOG0472|consen 200 -----PELGGLESLE-----------------LLYLRRNKIRFL--PEFP-------------------------GCSLL 230 (565)
T ss_pred -----hhhcchhhhH-----------------HHHhhhcccccC--CCCC-------------------------ccHHH
Confidence 4555555444 344555554211 1111 13556
Q ss_pred chhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccccccccccc
Q 000975 751 EDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRS 830 (1205)
Q Consensus 751 ~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 830 (1205)
.+|+...+.. +-.+.+. ...+++|..|++++| +++.+|+.. ..
T Consensus 231 ~Elh~g~N~i-~~lpae~--~~~L~~l~vLDLRdN-klke~Pde~---------------------------------cl 273 (565)
T KOG0472|consen 231 KELHVGENQI-EMLPAEH--LKHLNSLLVLDLRDN-KLKEVPDEI---------------------------------CL 273 (565)
T ss_pred HHHHhcccHH-HhhHHHH--hcccccceeeecccc-ccccCchHH---------------------------------HH
Confidence 6777655432 1122221 256788888888887 444443211 34
Q ss_pred CCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhc-cCCCccc
Q 000975 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLAL-RRLPQLT 909 (1205)
Q Consensus 831 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~L~ 909 (1205)
+.+|.+|+++++ .++.+|+ .++++ .|+.|.+.|++. +++-.+-... +.-.-|++|.= ..|..+.
T Consensus 274 LrsL~rLDlSNN-~is~Lp~--sLgnl-hL~~L~leGNPl-rTiRr~ii~~----------gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 274 LRSLERLDLSNN-DISSLPY--SLGNL-HLKFLALEGNPL-RTIRREIISK----------GTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred hhhhhhhcccCC-ccccCCc--ccccc-eeeehhhcCCch-HHHHHHHHcc----------cHHHHHHHHHHhhccCCCC
Confidence 667888888887 6778877 35777 888899998663 2222110000 00112333322 0111111
Q ss_pred ccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCccc
Q 000975 910 SSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKF 989 (1205)
Q Consensus 910 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 989 (1205)
. +..+.+.. .....-.+.......+.+.|++++-+++.++...|... .-.-....++++ +++..
T Consensus 339 ~--------se~~~e~~-----~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~--~~~~Vt~Vnfsk-NqL~e 402 (565)
T KOG0472|consen 339 Q--------SEGGTETA-----MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA--KSEIVTSVNFSK-NQLCE 402 (565)
T ss_pred C--------Cccccccc-----CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh--hhcceEEEeccc-chHhh
Confidence 0 00000000 00000011222334567788888888887766554311 112266777777 67777
Q ss_pred ccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCc
Q 000975 990 LFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCP 1069 (1205)
Q Consensus 990 l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~ 1069 (1205)
+| ..+..+..+.+.-+...+.+..++ .....+++|..|++++ +-|.++|.+ +..+.+|+.|+|+. +
T Consensus 403 lP--k~L~~lkelvT~l~lsnn~isfv~---------~~l~~l~kLt~L~L~N-N~Ln~LP~e-~~~lv~Lq~LnlS~-N 468 (565)
T KOG0472|consen 403 LP--KRLVELKELVTDLVLSNNKISFVP---------LELSQLQKLTFLDLSN-NLLNDLPEE-MGSLVRLQTLNLSF-N 468 (565)
T ss_pred hh--hhhHHHHHHHHHHHhhcCccccch---------HHHHhhhcceeeeccc-chhhhcchh-hhhhhhhheecccc-c
Confidence 75 234445555544443434443332 2345688999999998 567788754 45677799999987 4
Q ss_pred ccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccc
Q 000975 1070 ELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPS 1149 (1205)
Q Consensus 1070 ~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~ 1149 (1205)
..+.+| .+.-.+..|+.+-.+++ .+.+++..+ .+.+.+|..|++.+ ..++.+ |.
T Consensus 469 rFr~lP---------------------~~~y~lq~lEtllas~n-qi~~vd~~~--l~nm~nL~tLDL~n-Ndlq~I-Pp 522 (565)
T KOG0472|consen 469 RFRMLP---------------------ECLYELQTLETLLASNN-QIGSVDPSG--LKNMRNLTTLDLQN-NDLQQI-PP 522 (565)
T ss_pred ccccch---------------------HHHhhHHHHHHHHhccc-cccccChHH--hhhhhhcceeccCC-CchhhC-Ch
Confidence 565555 22222233333333333 455555442 24567777788776 456664 44
Q ss_pred hhHhhccCCcEEEEecCC
Q 000975 1150 SMMRSLKKLEHLSVIECE 1167 (1205)
Q Consensus 1150 ~~l~~l~sL~~L~i~~C~ 1167 (1205)
. ++++++|++|.+++.|
T Consensus 523 ~-LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 523 I-LGNMTNLRHLELDGNP 539 (565)
T ss_pred h-hccccceeEEEecCCc
Confidence 2 7788888888887743
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.8e-24 Score=222.03 Aligned_cols=233 Identities=25% Similarity=0.348 Sum_probs=167.7
Q ss_pred cCCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
...+..+.+++|.+..+|+.+ ++..+..+++++|+++ .+|+.+ ..+..|+.|++++|.+.++|++++.+..|..|+.
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 445667778888888888777 7788888888888877 777776 6677888888888888888888888888888888
Q ss_pred cCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcccc
Q 000975 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 590 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
.+|+++. |+.++++.+|..|++.+|+++.+|...-+++.|++||...|- ++.+|++ ++.|.+|+.||+..|.+..+|
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccccCC
Confidence 8888777 888888888888888888888887776668888888887743 7888877 888888888888888776655
Q ss_pred CCCccchHhhccCCCCcEEEEecc------hh-hhccccccccccccceEEEccccccCCccCccceEEeeccCcccchh
Q 000975 669 GQSNASVVELKQLSSLTILDMHIP------DA-QLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGY 741 (1205)
Q Consensus 669 ~~~~~~l~~L~~L~~L~~L~l~~~------~~-~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 741 (1205)
++..+..|..|++... .. ...+.++..+||+.|++. ..|.
T Consensus 223 --------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pd 269 (565)
T KOG0472|consen 223 --------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPD 269 (565)
T ss_pred --------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-------------------------cCch
Confidence 4555555555555421 11 124455566666666652 2222
Q ss_pred hHHHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCC
Q 000975 742 GIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDP 786 (1205)
Q Consensus 742 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~ 786 (1205)
.+ -.+++|+.|+++++... ..+..+ +++ .|+.|-+.||+
T Consensus 270 e~-clLrsL~rLDlSNN~is-~Lp~sL---gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EI-CLLRSLERLDLSNNDIS-SLPYSL---GNL-HLKFLALEGNP 308 (565)
T ss_pred HH-HHhhhhhhhcccCCccc-cCCccc---ccc-eeeehhhcCCc
Confidence 22 23577888888876432 333344 777 78888888886
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.6e-22 Score=214.35 Aligned_cols=337 Identities=18% Similarity=0.250 Sum_probs=252.9
Q ss_pred HhcCCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcE
Q 000975 509 AARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (1205)
Q Consensus 509 ~~~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 586 (1205)
....+++.+++..|.+..+|... ...+|+.|+|.+|.++ .+..+-++.++.||+||||.|.|+.+|. +|..=.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 34678899999999999999877 5566999999999987 6666667889999999999999998874 4777789999
Q ss_pred EEccCCcCCC--CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCc
Q 000975 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (1205)
Q Consensus 587 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 663 (1205)
|+|++|+|+. ...|.+|.+|-+|.|++|+++.+|. .|.+|++|+.|+|..|. ++.+..-.|..|++|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcC
Confidence 9999999988 5889999999999999999999975 46679999999999965 666655558899999999998888
Q ss_pred CccccCCCccchHhhccCCCCcEEEEec-------chhhhccccccccccccceEEEccccccCCccCccceEEeeccCc
Q 000975 664 TRKVEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNS 736 (1205)
Q Consensus 664 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~-------~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~ 736 (1205)
+....+ +.+-.+.++++|++.. .+....+..|+.++|+.|.|..-..-.|. ..+.++.+.|+.+..
T Consensus 257 I~kL~D------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 257 ISKLDD------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRI 329 (873)
T ss_pred cccccC------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEecccccc
Confidence 877665 5566777888888873 23445678888999999988654444552 235677888888888
Q ss_pred ccchhhHHHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCC-CCCccccccccccccccccc
Q 000975 737 IYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSE-GPVIFPLLQSLFLCNLILLE 815 (1205)
Q Consensus 737 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~ 815 (1205)
...+++....+..|+.|.|+.+....-.-..+ .++.+|++|+|++|.-.-.+.+.. ...++++|++|.+.+ ++++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceee
Confidence 88888888888889999988765432222233 678889999998884332332221 345577888888877 6677
Q ss_pred ceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEecc
Q 000975 816 KVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTD 867 (1205)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 867 (1205)
.++...+ ..+++|++|++.+++ +.++.+.. +..+ .|++|.+..
T Consensus 406 ~I~krAf------sgl~~LE~LdL~~Na-iaSIq~nA-Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 406 SIPKRAF------SGLEALEHLDLGDNA-IASIQPNA-FEPM-ELKELVMNS 448 (873)
T ss_pred ecchhhh------ccCcccceecCCCCc-ceeecccc-cccc-hhhhhhhcc
Confidence 7766655 457888888888774 44443322 2334 666766644
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=4.2e-23 Score=223.85 Aligned_cols=365 Identities=17% Similarity=0.197 Sum_probs=216.3
Q ss_pred cCCCcEEEccCCCCC--CCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEE
Q 000975 511 RKNPTAISIPFRDIS--ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 587 (1205)
.+-+|.+++++|++. .+|... .+++++-|.|....+. .+|+.. +.+.+|..|.+++|++..+-..++.|+.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 445677778877774 566666 7778888888777665 677765 77888888888888877777777788888888
Q ss_pred EccCCcCCC---CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcC
Q 000975 588 SFDCCHLED---VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 588 ~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
+++.|++.. |..|..|..|.+|||++|++++.|..+.+-+++-.|+|++|+ +.++|...+.+|+.|-.|++++|..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh
Confidence 888887654 677888888888888888888888888888888888888854 7778777777888888888888777
Q ss_pred ccccCCCccchHhhccCCCCcEEEEecchhh-hccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhH
Q 000975 665 RKVEGQSNASVVELKQLSSLTILDMHIPDAQ-LLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGI 743 (1205)
Q Consensus 665 ~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~-~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~ 743 (1205)
..+| ..+..|.+|++|.++..... ..++.|
T Consensus 163 e~LP-------PQ~RRL~~LqtL~Ls~NPL~hfQLrQL------------------------------------------ 193 (1255)
T KOG0444|consen 163 EMLP-------PQIRRLSMLQTLKLSNNPLNHFQLRQL------------------------------------------ 193 (1255)
T ss_pred hhcC-------HHHHHHhhhhhhhcCCChhhHHHHhcC------------------------------------------
Confidence 7666 45566666666665521110 000000
Q ss_pred HHHhhhhchhhcccccCc-hhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccc
Q 000975 744 KKLLKTTEDLYLDNLNGI-QNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQV 822 (1205)
Q Consensus 744 ~~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 822 (1205)
..+++|+.|++++.... .+++..+ ..+.||..++++.| ++..+|.+. ..+++|+.|++++ +.++++...
T Consensus 194 -PsmtsL~vLhms~TqRTl~N~Ptsl---d~l~NL~dvDlS~N-~Lp~vPecl--y~l~~LrrLNLS~-N~iteL~~~-- 263 (1255)
T KOG0444|consen 194 -PSMTSLSVLHMSNTQRTLDNIPTSL---DDLHNLRDVDLSEN-NLPIVPECL--YKLRNLRRLNLSG-NKITELNMT-- 263 (1255)
T ss_pred -ccchhhhhhhcccccchhhcCCCch---hhhhhhhhcccccc-CCCcchHHH--hhhhhhheeccCc-Cceeeeecc--
Confidence 00233333333333221 1222222 44455555555544 222222211 1233444444433 122222111
Q ss_pred ccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccch-hhhhcccCCCCcccCCccceeeccccchhh
Q 000975 823 QLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKIL-RMIVGEETDNHDHENGSMRVVNFNHLHSLA 901 (1205)
Q Consensus 823 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 901 (1205)
.+...+|+.|+++.+ .|+.+|. .+..|+.|+.|.+.++..- +.+| .+|+.+.+|+.+.
T Consensus 264 -----~~~W~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~NkL~FeGiP-------------SGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 264 -----EGEWENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANNNKLTFEGIP-------------SGIGKLIQLEVFH 322 (1255)
T ss_pred -----HHHHhhhhhhccccc-hhccchH--HHhhhHHHHHHHhccCcccccCCc-------------cchhhhhhhHHHH
Confidence 144567777888776 5777765 3567777777777664321 1111 1234555666655
Q ss_pred ccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEe
Q 000975 902 LRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTV 981 (1205)
Q Consensus 902 l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l 981 (1205)
..+ .+|+-.|. ....++.|+.|.|+.|.+..++.. ++-++.|+.|++
T Consensus 323 aan-N~LElVPE---------------------------glcRC~kL~kL~L~~NrLiTLPea-----IHlL~~l~vLDl 369 (1255)
T KOG0444|consen 323 AAN-NKLELVPE---------------------------GLCRCVKLQKLKLDHNRLITLPEA-----IHLLPDLKVLDL 369 (1255)
T ss_pred hhc-cccccCch---------------------------hhhhhHHHHHhcccccceeechhh-----hhhcCCcceeec
Confidence 544 23333332 123466677777777766655432 224667777777
Q ss_pred cccCCccccc
Q 000975 982 DKCGCLKFLF 991 (1205)
Q Consensus 982 ~~C~~L~~l~ 991 (1205)
...++|.--|
T Consensus 370 reNpnLVMPP 379 (1255)
T KOG0444|consen 370 RENPNLVMPP 379 (1255)
T ss_pred cCCcCccCCC
Confidence 7766665443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=4.6e-23 Score=235.39 Aligned_cols=127 Identities=24% Similarity=0.279 Sum_probs=100.4
Q ss_pred CcEEEccCCCCCCCCCcc--CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccC
Q 000975 514 PTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~--~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 591 (1205)
+.++++..|.+...|-.+ +.-+|++|++++|.++ ..|..+ ..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 455566666555544222 4555999999988876 667665 778899999999999999998899999999999999
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCc
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKV 642 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~ 642 (1205)
|.+.. |.++..+++|++||+++|.+..+|.-+..++.+..+..++|..+..
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~ 152 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR 152 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh
Confidence 98877 8899999999999999999998888888888888888887644433
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-17 Score=151.29 Aligned_cols=152 Identities=22% Similarity=0.389 Sum_probs=86.7
Q ss_pred CCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 591 (1205)
.+.++.+++|.+..+|+.+ ++.+|.+|++++|.+. .+|.++ +.+++||.|++.-|.+..+|..|+.++-|.+|||.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 4555555566655555554 5556666666655554 455554 555666666666555555566666666666666666
Q ss_pred CcCCC---CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcccc
Q 000975 592 CHLED---VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 592 ~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
|.+++ |..|..+..|+-|.|+.|.+.-+|..+++|++||.|.+..|. +-++|.+ ++.|+.|++|++.+|...-+|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceeeecC
Confidence 55544 555555555666666666555556566666666666655533 4445544 555666666655555444333
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4.3e-17 Score=149.17 Aligned_cols=176 Identities=23% Similarity=0.371 Sum_probs=154.0
Q ss_pred CCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-Ccccc
Q 000975 523 DISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVG 601 (1205)
Q Consensus 523 ~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~ 601 (1205)
.+..+|..+++++.+.|.+++|+++ .+|+.+ ..+.+|++|++++|.|+++|.+++.++.||.|++.-|++.. |..||
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 3466777789999999999999998 788876 89999999999999999999999999999999999999887 99999
Q ss_pred ccccCcEEEcccCCCC--ccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhc
Q 000975 602 DLAKLEILSFRNSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELK 679 (1205)
Q Consensus 602 ~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 679 (1205)
.++-|++|||.+|++. .+|..|..++.|+-|.|++|. ..-+|++ +++|++||.|.+..|.....| .+++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~lp-------keig 170 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLSLP-------KEIG 170 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhhCc-------HHHH
Confidence 9999999999999887 789989999999999999954 7888887 999999999999999888777 6888
Q ss_pred cCCCCcEEEEecchhhhccccccccccccc
Q 000975 680 QLSSLTILDMHIPDAQLLLEDLISLDLERY 709 (1205)
Q Consensus 680 ~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~ 709 (1205)
.+++|+.|++........++.+..+++-++
T Consensus 171 ~lt~lrelhiqgnrl~vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPELANLDLVGN 200 (264)
T ss_pred HHHHHHHHhcccceeeecChhhhhhhhhhh
Confidence 899999998885555555666666666554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.1e-13 Score=165.80 Aligned_cols=92 Identities=22% Similarity=0.169 Sum_probs=46.6
Q ss_pred ceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCC
Q 000975 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 638 (1205)
+|+.|++++|.++.+|.. +++|++|++++|.++. |.. ..+|++|++++|.++.+|.. ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 455555555555555532 3455555555555554 221 24555566666655555542 2345556666543
Q ss_pred CCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 639 KLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 639 ~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++.+|. .+++|++|++++|.+.
T Consensus 294 -Lt~LP~----~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 294 -LTSLPV----LPPGLQELSVSDNQLA 315 (788)
T ss_pred -cccccc----cccccceeECCCCccc
Confidence 555543 1345666666555443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.9e-13 Score=163.75 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=107.2
Q ss_pred CCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCC
Q 000975 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 592 (1205)
+-..|+++.+.+..+|..+. ++|+.|.+.+|.+. .+|. .+++|++|++++|.++.+|.. .++|++|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45678899999999998663 48999999999987 6774 368999999999999999863 468999999999
Q ss_pred cCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccc
Q 000975 593 HLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (1205)
Q Consensus 593 ~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 667 (1205)
.+.. |.. ..+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. ..+|+.|++++|.+..+
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTSL 337 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCccccc
Confidence 9887 442 36788999999999999863 5789999999964 7777642 23577777777765433
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=1.8e-15 Score=157.49 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=68.1
Q ss_pred ceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccC-CcCCC-C-ccccccccCcEEEc
Q 000975 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC-CHLED-V-ARVGDLAKLEILSF 611 (1205)
Q Consensus 536 Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~-~~l~~-~-~~i~~L~~L~~L~L 611 (1205)
...+.|..|.++ .+|+..|+.+++||.||||+|.|+.+ |+.|.+|..|-.|-+-+ |+|++ | ..|++|..|+.|.+
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344555555555 55555556666666666666666554 55555555555544444 45555 3 45555666666666
Q ss_pred ccCCCCccc-hhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCC
Q 000975 612 RNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 612 ~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
.-|++..++ ..+..|++|..|.+..| .+..++.+.+..+..++++++..|
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcC
Confidence 555555443 33555555555555553 255555545555555555555433
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=1.3e-14 Score=151.22 Aligned_cols=287 Identities=20% Similarity=0.249 Sum_probs=172.3
Q ss_pred CCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcEEEccc-CCCCccchh-c
Q 000975 549 QIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN-SHIEQLPEQ-I 623 (1205)
Q Consensus 549 ~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~-~~l~~lp~~-i 623 (1205)
.+|.++ -..-..+.|..|.|+.+|+ +|+.+++||.|||++|.|+. |..|.+|..|-.|-+.+ |+|+.+|+. |
T Consensus 60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 455443 3345678889999998865 48999999999999999887 78899998887777766 789999875 7
Q ss_pred cCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecchh--hhccccc
Q 000975 624 GNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDA--QLLLEDL 701 (1205)
Q Consensus 624 ~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~--~~~~~~L 701 (1205)
++|..|+.|.+.-|. +..++.+.+..|++|..|.+..|.+..+.. ..+..+..++.+++.-... ..+++++
T Consensus 137 ~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~------~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICK------GTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhcc------ccccchhccchHhhhcCccccccccchh
Confidence 889999999888754 777888889999999999988887776664 4566666777666653221 1222222
Q ss_pred cccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchh---hcccc-cCchhhhhhhccCCCcccc
Q 000975 702 ISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDL---YLDNL-NGIQNIVQELDNGEGFPRL 777 (1205)
Q Consensus 702 ~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L---~l~~~-~~~~~~~~~l~~~~~l~~L 777 (1205)
.. ++..+.+ ...|.. ......+........... ...-.++.+ ....+ .........+ ..+|+|
T Consensus 210 a~-~~a~~~i----etsgar---c~~p~rl~~~Ri~q~~a~--kf~c~~esl~s~~~~~d~~d~~cP~~cf---~~L~~L 276 (498)
T KOG4237|consen 210 AD-DLAMNPI----ETSGAR---CVSPYRLYYKRINQEDAR--KFLCSLESLPSRLSSEDFPDSICPAKCF---KKLPNL 276 (498)
T ss_pred hh-HHhhchh----hcccce---ecchHHHHHHHhcccchh--hhhhhHHhHHHhhccccCcCCcChHHHH---hhcccc
Confidence 11 1111111 011100 000000000000000000 001112222 11111 1111111223 789999
Q ss_pred ceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHc
Q 000975 778 KHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKL 857 (1205)
Q Consensus 778 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 857 (1205)
+.|++++| .++.+... ...+...++.|.+.. ++++.+....+ ..+..|+.|+++++ .++.+.+. .+..+
T Consensus 277 ~~lnlsnN-~i~~i~~~-aFe~~a~l~eL~L~~-N~l~~v~~~~f------~~ls~L~tL~L~~N-~it~~~~~-aF~~~ 345 (498)
T KOG4237|consen 277 RKLNLSNN-KITRIEDG-AFEGAAELQELYLTR-NKLEFVSSGMF------QGLSGLKTLSLYDN-QITTVAPG-AFQTL 345 (498)
T ss_pred eEeccCCC-ccchhhhh-hhcchhhhhhhhcCc-chHHHHHHHhh------hccccceeeeecCC-eeEEEecc-ccccc
Confidence 99999998 45554221 233445667777755 45555544443 45778888999887 56666553 45778
Q ss_pred ccCcEEEecccc
Q 000975 858 LQLEELEVTDCK 869 (1205)
Q Consensus 858 ~~L~~L~l~~c~ 869 (1205)
.+|.+|.+-.++
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888885543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1e-12 Score=158.99 Aligned_cols=95 Identities=23% Similarity=0.327 Sum_probs=47.9
Q ss_pred ceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCC
Q 000975 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 638 (1205)
+|+.|+|++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N- 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN- 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-
Confidence 44555555555555554432 355555555555544 33222 245556666665555555443 35666666553
Q ss_pred CCCccChhhhcCCCCCCEEEccCCcC
Q 000975 639 KLKVIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 639 ~l~~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
.+..+|.. +. .+|+.|++++|.+
T Consensus 273 ~L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 273 KISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred ccCccccc-cC--CCCcEEECCCCcc
Confidence 35555443 22 3566666655543
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=1.8e-14 Score=151.70 Aligned_cols=278 Identities=18% Similarity=0.228 Sum_probs=182.6
Q ss_pred ccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcc
Q 000975 829 RSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQL 908 (1205)
Q Consensus 829 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 908 (1205)
...|++++|.+.+|.++++..-..+..+++.|++|.+..|.+++........ ..+++|++++++.|+..
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-----------~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-----------EGCRKLKYLNLSWCPQI 229 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH-----------HhhhhHHHhhhccCchh
Confidence 3466777777777776666544445566777777777777776655432110 34677777777777766
Q ss_pred cccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccc---cccccCCCCCCCccccCCCccEEEecccC
Q 000975 909 TSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSI---NIERIWPNQFPATSYSSQQLTELTVDKCG 985 (1205)
Q Consensus 909 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~---~l~~~~~~~~~~~~~~l~~L~~L~l~~C~ 985 (1205)
..-.. + .-..++..++.+.+.+| .+..+..-. ..+.-+.++++..|+
T Consensus 230 ~~~gv----------~---------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~-----~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 230 SGNGV----------Q---------------ALQRGCKELEKLSLKGCLELELEALLKAA-----AYCLEILKLNLQHCN 279 (483)
T ss_pred hcCcc----------h---------------HHhccchhhhhhhhcccccccHHHHHHHh-----ccChHhhccchhhhc
Confidence 44110 0 00122344555655566 111111110 145667888888998
Q ss_pred CcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCccc-CCCCcceee
Q 000975 986 CLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLV-ELPSLRQLS 1064 (1205)
Q Consensus 986 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~-~l~~L~~L~ 1064 (1205)
.+++.-.......+..||.|..++|..+++.+. ..+....++|+.|.++.|..+++.....+. +++.|+.++
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l-------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVL-------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHH-------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 888874434456678999999999998776544 223456899999999999998887765555 689999999
Q ss_pred eccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCC--CCCcccCccEEEeccccc
Q 000975 1065 INFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQL--ASGSFSKLKVLHVEYCDE 1142 (1205)
Q Consensus 1065 i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~~l~sL~~L~i~~c~~ 1142 (1205)
+.+|-..+.-. +. .--.++|.|++|.+++|...+.....-+ ....+..|..|.+++||.
T Consensus 353 ~e~~~~~~d~t----------------L~---sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 353 LEECGLITDGT----------------LA---SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred ccccceehhhh----------------Hh---hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 99987765431 11 1124689999999999976655411111 113467899999999999
Q ss_pred ccccccchhHhhccCCcEEEEecCCCceeeee
Q 000975 1143 LLNIFPSSMMRSLKKLEHLSVIECESLKEITE 1174 (1205)
Q Consensus 1143 L~~~lp~~~l~~l~sL~~L~i~~C~~l~~~~~ 1174 (1205)
+++...+ .+..+++||.+++..|..+..-+.
T Consensus 414 i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 414 ITDATLE-HLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred chHHHHH-HHhhCcccceeeeechhhhhhhhh
Confidence 8874333 467888999999999988866543
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=4e-11 Score=156.25 Aligned_cols=298 Identities=17% Similarity=0.197 Sum_probs=182.0
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 225 (1205)
+|....+++-|+...+.+-+ ....+++.|+|++|.||||++..+.+.. +.++|+++... .+...+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHH
Confidence 44445567888876665542 2356899999999999999999988532 25899999754 45566666666
Q ss_pred HHhCCCCCC-------------CCCHHHHHHHHHHHHHc-CCeEEEEEcccccccc--cc-cccCCCCCCCccccCCCCC
Q 000975 226 DQLGLEIVR-------------PDSLVEKANQLRQALKK-KKRVLVILDDIWTQIN--LD-DIGIPFWDGEKQSVDNQGR 288 (1205)
Q Consensus 226 ~~l~~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~~-~~~~~~~~~~~~~~~~~~~ 288 (1205)
..++..... ..........+...+.. +.+++|||||+...+. .. .+...+.. ...+
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~-------~~~~ 152 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH-------QPEN 152 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh-------CCCC
Confidence 666321111 01223334445555543 5889999999977532 11 12111111 2356
Q ss_pred eEEEEecCchhHHhh-cC-CCCceEEcc----CCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHH
Q 000975 289 WTLLLASRDQHVLRI-NM-SNPRIFSIS----TLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANA 362 (1205)
Q Consensus 289 s~ilvTTr~~~v~~~-~~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 362 (1205)
.++|||||...-... .. ......++. +|+.+|+.++|....|... ..+...+|.+.++|+|+++..++..
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 788899998431110 01 112345565 9999999999998876532 2345679999999999999999887
Q ss_pred hcCCCchHHHHHHHHHHhcCCCcccccccchhh-HHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHccccccc
Q 000975 363 LKGQSTHVWKDAINWLRKSNPRKIKGMDADLSS-IELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTG 441 (1205)
Q Consensus 363 l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~ 441 (1205)
++..+.. .......+.... ....... ..-.|+.||++.++.+...|+++. ++.+ +... +. +
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~------~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~~------l~-~ 290 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGIN------ASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDA-LIVR------VT-G 290 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHH-HHHH------Hc-C
Confidence 7554210 011111110000 0112222 334588999999999999999974 5533 2221 11 1
Q ss_pred chhHHHHHHHHHHHHHhhcccccccc-CC-CCCcEEEehHHHHHHHHHhc
Q 000975 442 IDTLEVARNRVYTLMDHLKGPCLLLN-GD-TEDHVKMHQIIHALAVLIAS 489 (1205)
Q Consensus 442 ~~~~~~~~~~~~~~~~~L~~~~l~~~-~~-~~~~~~mHdlv~~~~~~~~~ 489 (1205)
. .++ .+.+++|.+.+++.. .+ +...|+.|++++++++....
T Consensus 291 ~---~~~----~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 E---ENG----QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred C---CcH----HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1 111 245677777888653 22 33479999999999988753
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=5.2e-12 Score=152.92 Aligned_cols=227 Identities=17% Similarity=0.222 Sum_probs=119.8
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
+..++.|++++|.+..+|... +++|+.|++++|.+. .+|..+ ..+|+.|+|++|.+..+|..+. .+|++|+++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 345566666666666665433 245666666666555 455443 2356666666666666665543 356666666
Q ss_pred CCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 591 CCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 591 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
+|.++. |..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .++|+.|++++|.+..++.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCccccCCh
Confidence 666555 44333 356666666666666654332 355666666643 4555432 1 2456666666655444331
Q ss_pred CCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhh
Q 000975 670 QSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKT 749 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~ 749 (1205)
.+ +++|+.+++++|++.. .+.. ....++.+.+..+.....|..+. .+
T Consensus 343 -------~l-------------------~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~Lt~LP~~l~---~s 389 (754)
T PRK15370 343 -------SL-------------------PPELQVLDVSKNQITV--LPET--LPPTITTLDVSRNALTNLPENLP---AA 389 (754)
T ss_pred -------hh-------------------cCcccEEECCCCCCCc--CChh--hcCCcCEEECCCCcCCCCCHhHH---HH
Confidence 11 1234444455544421 1111 11345555555554444444432 46
Q ss_pred hchhhcccccCchhhhhhhcc-CCCccccceEEeecCC
Q 000975 750 TEDLYLDNLNGIQNIVQELDN-GEGFPRLKHLHVQNDP 786 (1205)
Q Consensus 750 L~~L~l~~~~~~~~~~~~l~~-~~~l~~L~~L~L~~~~ 786 (1205)
|+.|+++++... .++..++. ...++++..|.+.+|+
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 888888876543 33222211 1456888999998885
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=2.3e-13 Score=143.39 Aligned_cols=320 Identities=16% Similarity=0.152 Sum_probs=192.0
Q ss_pred ccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccchHHHH
Q 000975 776 RLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAE 855 (1205)
Q Consensus 776 ~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 855 (1205)
-|+.|.+++|.....-+-......+|+++.|.+.+|.++++.....+. ..+++|+.|.+..|+.+++..-.....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla-----~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA-----RYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH-----HhcchhhhhhhcccchhHHHHHHHHHH
Confidence 356666666654433322234455666667766666655544322222 356778888888888887765444556
Q ss_pred HcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccch
Q 000975 856 KLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNL 935 (1205)
Q Consensus 856 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1205)
.+++|++|.++.|+.+..-..... ......++.+..++|..+..-
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~-----------~rG~~~l~~~~~kGC~e~~le------------------------ 258 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQAL-----------QRGCKELEKLSLKGCLELELE------------------------ 258 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHH-----------hccchhhhhhhhcccccccHH------------------------
Confidence 788888888888887765110000 022334555555555543210
Q ss_pred hhhcccccccCCcceeeeccc-cccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccc
Q 000975 936 LAFFNKKVVFPGLKKLEMVSI-NIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQ 1014 (1205)
Q Consensus 936 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 1014 (1205)
.+.......+-+.++++..| .+++...... ...+..|+.|..++|..+++.+....-.+.++|+.|.+..|.+++
T Consensus 259 -~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i---~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 259 -ALLKAAAYCLEILKLNLQHCNQLTDEDLWLI---ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred -HHHHHhccChHhhccchhhhccccchHHHHH---hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 01111223455666676676 3333311111 115678899999999888877655555677899999999998876
Q ss_pred cccccccccccccccccccccceeccccCCCccccCCCccc-CCCCcceeeeccCcccccccccccccccCCCCCCCCcc
Q 000975 1015 GIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLV-ELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQ 1093 (1205)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~-~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~ 1093 (1205)
+... ..+...++.|+.+++.+|....+-..-.+. +++.|+.|.++.|..+++.-..++
T Consensus 335 d~~f-------t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------------- 393 (483)
T KOG4341|consen 335 DRGF-------TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------------- 393 (483)
T ss_pred hhhh-------hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh--------------
Confidence 5432 112345888999999888776554222233 688999999999887776421111
Q ss_pred cccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccchhHhhccCCcEEEEe
Q 000975 1094 ALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVI 1164 (1205)
Q Consensus 1094 ~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~ 1164 (1205)
.........|+.|.+++||.++.-...- +...++|+.+++.+|.....-.-.-+.+.+|++++....
T Consensus 394 --~~~~c~~~~l~~lEL~n~p~i~d~~Le~--l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 394 --SSSSCSLEGLEVLELDNCPLITDATLEH--LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred --hhccccccccceeeecCCCCchHHHHHH--HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 1122345678889999998766432211 233578999999999888763222345667777665543
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=1.7e-09 Score=125.70 Aligned_cols=292 Identities=18% Similarity=0.177 Sum_probs=176.4
Q ss_pred cccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (1205)
..++||+++++++...+. ....+.+.|+|++|+|||++++.++++.......-.++++++....+...++..|+++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 458899999999998874 2344668899999999999999999987644333456788887777888999999999
Q ss_pred hCCC-CC-CCCCHHHHHHHHHHHHHc-CCeEEEEEccccccc------ccccccCCCCCCCccccCCCCCeEEEEecCch
Q 000975 228 LGLE-IV-RPDSLVEKANQLRQALKK-KKRVLVILDDIWTQI------NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (1205)
Q Consensus 228 l~~~-~~-~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~ 298 (1205)
+... .+ ...+..+....+.+.+.+ +++.+||||+++... .+..+...... . .+.+..+|.++...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-----~-~~~~v~vI~i~~~~ 183 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-----Y-PGARIGVIGISSDL 183 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-----c-CCCeEEEEEEECCc
Confidence 8752 21 112445566777777754 466899999998753 12222111111 0 11123356666654
Q ss_pred hHHhh------cCCCCceEEccCCChHhHHHHHHHHhCCCC-CCCchHHHHHHHHHh----cCCChHHHHHHHHHh----
Q 000975 299 HVLRI------NMSNPRIFSISTLADGEAKSLFEKIVGDSA-KESDCRAIGVEIVGK----CGGLPIAVSTIANAL---- 363 (1205)
Q Consensus 299 ~v~~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~----~~glPLai~~~~~~l---- 363 (1205)
.+... ..-....+.+++++.++..+++..++.... ...-.+++.+.|++. .|..+.|+.++-.+.
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 43321 011235689999999999999998873210 111112333444444 455777777764432
Q ss_pred -cCC---CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhccc-C-CCCccCHHHHHHHH--HHc
Q 000975 364 -KGQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLL-N-DGSRLPIDDLIRYV--FAL 435 (1205)
Q Consensus 364 -~~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~f-p-~~~~i~~~~li~~w--~a~ 435 (1205)
++. +.+++..+.+... ...+.-.+..||.+.|..+..++.. . +...+...++.... +++
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 111 3445555554431 2234556889999988877766544 2 12345655555432 121
Q ss_pred ccccccchhHHHHHHHHHHHHHhhcccccccc
Q 000975 436 DNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (1205)
Q Consensus 436 g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 467 (1205)
. + +.. ......+.+++..|...+++..
T Consensus 331 ~-~--~~~--~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 331 E-L--GYE--PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred H-c--CCC--cCcHHHHHHHHHHHHhcCCeEE
Confidence 1 0 000 1123456678888988999863
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=3.2e-09 Score=116.44 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=117.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH--
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQ-- 247 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-- 247 (1205)
....+++.|+|++|+||||+++.+++..... .+ .++|+ +....+..+++..|+..++.+.... ........+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHH
Confidence 3445689999999999999999999886522 11 22343 3334567889999999998875443 33333333333
Q ss_pred --HHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhHHh--------hcCCCCceEEccC
Q 000975 248 --ALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR--------INMSNPRIFSIST 315 (1205)
Q Consensus 248 --~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~--------~~~~~~~~~~l~~ 315 (1205)
....+++.++|+||++... .++.+.. +... . ........|++|........ ........+++++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~-~--~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNF-Q--TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCc-c--cCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 3335688999999998863 2333321 1110 0 00223345566654432111 0011234678999
Q ss_pred CChHhHHHHHHHHhC---CCCCCCchHHHHHHHHHhcCCChHHHHHHHHHh
Q 000975 316 LADGEAKSLFEKIVG---DSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 363 (1205)
++.+|..+++...+. ......-.++..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999988773 211222345788999999999999999888776
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.18 E-value=6.9e-09 Score=119.38 Aligned_cols=296 Identities=16% Similarity=0.180 Sum_probs=174.7
Q ss_pred ccCCChHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-CC---cEEEEEEecCCCCHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD----SNVNMIGLYGMGGVGKTTLVKVVARQVVKED-LF---DVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i 224 (1205)
.++||++++++|...+.. ...+.+.|+|++|+|||++++.+++...... .. -.++|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 578999999999998862 3446789999999999999999998764221 11 246788888777888899999
Q ss_pred HHHh---CCCCCCC-CCHHHHHHHHHHHHHc-CCeEEEEEccccccc-ccccccCCCCCCC-ccccCCCCCeEEEEecCc
Q 000975 225 ADQL---GLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQI-NLDDIGIPFWDGE-KQSVDNQGRWTLLLASRD 297 (1205)
Q Consensus 225 ~~~l---~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~ilvTTr~ 297 (1205)
++++ +...+.. .+..+....+.+.+.. +++++||||+++... ..+.+...+.... .... .+....+|++|..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~-~~~~v~lI~i~n~ 174 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL-DNAKVGVIGISND 174 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC-CCCeEEEEEEECC
Confidence 9988 3332211 1344555666666643 567899999998872 1111111110000 0001 1233445555554
Q ss_pred hhHHh-h--c---CCCCceEEccCCChHhHHHHHHHHhCC----CCCCCchHHHHHHHHHhcCCCh-HHHHHHHHHh---
Q 000975 298 QHVLR-I--N---MSNPRIFSISTLADGEAKSLFEKIVGD----SAKESDCRAIGVEIVGKCGGLP-IAVSTIANAL--- 363 (1205)
Q Consensus 298 ~~v~~-~--~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l--- 363 (1205)
..... . . .-....+.+++++.+|..+++..++.. ..-.++..+...+++....|.| .|+.++-.+.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43221 0 0 011256899999999999999988731 1112222334456677777888 4433332221
Q ss_pred -c-CC---CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhccc--CCCCccCHHHHHHHHH--H
Q 000975 364 -K-GQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLL--NDGSRLPIDDLIRYVF--A 434 (1205)
Q Consensus 364 -~-~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~f--p~~~~i~~~~li~~w~--a 434 (1205)
. +. +.+..+.+.+.+. .....-++..||.+.+..+..++.. .++..+...++...+. +
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 11 3334444443331 2334556789999888777766533 2344567777766432 1
Q ss_pred cccccccchhHHHHHHHHHHHHHhhcccccccc
Q 000975 435 LDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (1205)
Q Consensus 435 ~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 467 (1205)
+. +- ........+.+++..|...+++..
T Consensus 322 ~~-~~----~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 322 ED-IG----VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred Hh-cC----CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 21 10 011234567778888998999864
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.15 E-value=1.1e-09 Score=127.19 Aligned_cols=298 Identities=16% Similarity=0.163 Sum_probs=190.1
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 225 (1205)
+|......+-|....+.+-. ..+.+.+.|..|+|.||||++...+... ..-..+.|.+++.. .++..+...++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHH
Confidence 33345556677655444332 2368999999999999999999998832 33457899999865 46777888888
Q ss_pred HHhCCCCCCC-------------CCHHHHHHHHHHHHHc-CCeEEEEEcccccccc--c-ccccCCCCCCCccccCCCCC
Q 000975 226 DQLGLEIVRP-------------DSLVEKANQLRQALKK-KKRVLVILDDIWTQIN--L-DDIGIPFWDGEKQSVDNQGR 288 (1205)
Q Consensus 226 ~~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 288 (1205)
..++.-.+.. .+.......+...+.. .++..+||||..-..+ + ..+...+.. ...+
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~-------~P~~ 160 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH-------APEN 160 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh-------CCCC
Confidence 7776333222 1222334445554443 4788999999754421 1 111111111 3467
Q ss_pred eEEEEecCchhHHhhc-C-CCCceEEcc----CCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHH
Q 000975 289 WTLLLASRDQHVLRIN-M-SNPRIFSIS----TLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANA 362 (1205)
Q Consensus 289 s~ilvTTr~~~v~~~~-~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 362 (1205)
-..|||||...-...+ + -.....+++ .|+.+|+.++|....+..-+ +.-.+.+.+..+|.+-|+..++=.
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHH
Confidence 7899999998644211 1 112233443 58999999999998754333 334678999999999999999988
Q ss_pred hcCC-CchHHHHHHHHHHhcCCCcccccccc--hhhHHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHccccc
Q 000975 363 LKGQ-STHVWKDAINWLRKSNPRKIKGMDAD--LSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLF 439 (1205)
Q Consensus 363 l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~--~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~ 439 (1205)
++++ +.+.--..++ +.++. --...--++.||+++|..++.+|+++. +. ..|+..-.+++
T Consensus 237 ~~~~~~~~q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Ltg~~--- 298 (894)
T COG2909 237 LRNNTSAEQSLRGLS-----------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALTGEE--- 298 (894)
T ss_pred ccCCCcHHHHhhhcc-----------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHhcCC---
Confidence 8844 3222211111 11010 112344578999999999999999976 33 34444332222
Q ss_pred ccchhHHHHHHHHHHHHHhhccccccc--cCCCCCcEEEehHHHHHHHHHhcc
Q 000975 440 TGIDTLEVARNRVYTLMDHLKGPCLLL--NGDTEDHVKMHQIIHALAVLIASD 490 (1205)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~L~~~~l~~--~~~~~~~~~mHdlv~~~~~~~~~~ 490 (1205)
.....+++|.+++++. -++..+.|+.|.+..+|.+..-..
T Consensus 299 -----------ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 299 -----------NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -----------cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 2234578888888875 345677899999999999887664
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=1.3e-10 Score=143.15 Aligned_cols=158 Identities=25% Similarity=0.364 Sum_probs=119.8
Q ss_pred CCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCC--CCCcccc-cCCCcCCcEEEccCCc-CCC-C
Q 000975 523 DISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH--FPSLPLS-LGSLINLRTLSFDCCH-LED-V 597 (1205)
Q Consensus 523 ~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~--i~~lp~~-i~~L~~Lr~L~L~~~~-l~~-~ 597 (1205)
.....|...+....|.+.+.+|.+. .++.. ...+.|++|-+.+|. +..++.. |..+++|++|||++|. +.. |
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred CccccccccchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 4445666667788999999988875 44443 355689999999996 5666554 7889999999999987 666 9
Q ss_pred ccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHh
Q 000975 598 ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVE 677 (1205)
Q Consensus 598 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~ 677 (1205)
..|++|.+||||+++++.+..+|.++++|++|.+|++..+..+..+ ++....|.+||+|.+.... .......+.+
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~e 663 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA----LSNDKLLLKE 663 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc----cccchhhHHh
Confidence 9999999999999999999999999999999999999987766666 5556679999999876443 1112333444
Q ss_pred hccCCCCcEEE
Q 000975 678 LKQLSSLTILD 688 (1205)
Q Consensus 678 L~~L~~L~~L~ 688 (1205)
+.+|.+|+.+.
T Consensus 664 l~~Le~L~~ls 674 (889)
T KOG4658|consen 664 LENLEHLENLS 674 (889)
T ss_pred hhcccchhhhe
Confidence 54454444443
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=2.1e-10 Score=123.39 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=107.1
Q ss_pred cCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH---------
Q 000975 154 FPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI--------- 224 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------- 224 (1205)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+..+.. . ..++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~-~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-G-YKVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---E-ECCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-C-CcEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 78999999999999887667899999999999999999999987421 1 1345555444332221 1222
Q ss_pred -HHHh----CCCC------CCCCCHHHHHHHHHHHHHc-CCeEEEEEccccccc-ccc---cccCCCCCCCccccCCCCC
Q 000975 225 -ADQL----GLEI------VRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQI-NLD---DIGIPFWDGEKQSVDNQGR 288 (1205)
Q Consensus 225 -~~~l----~~~~------~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 288 (1205)
.+.+ .... ............+.+.+.+ +++.+||+||++... ... .+...+.. ..+.......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRS-LLDSLLSQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHH-HHHH----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHH-HHhhccccCC
Confidence 1112 1110 0111233445555566654 356999999998876 211 11111110 0001112334
Q ss_pred eEEEEecCchhHHhh-------cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 289 WTLLLASRDQHVLRI-------NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 289 s~ilvTTr~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
..+|++......... ..+....+.+++|+.+++++++...+.....-+..++..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555544433321 1233446999999999999999998744311122355668999999999988764
No 32
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=9.7e-10 Score=110.86 Aligned_cols=150 Identities=23% Similarity=0.308 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEEEEecCCCCHH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWK---EICGRIADQLGLEIVRPDSLVEKANQLR 246 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 246 (1205)
+++.|+|.+|+||||+++.++........ +..++|+..+...... .+...|..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP------IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh------hHHHHH
Confidence 57899999999999999999998876543 3467787776554332 3444444443322111 111233
Q ss_pred HHHHcCCeEEEEEcccccccccccc--cCCCCCCCccccCC--CCCeEEEEecCchhHH--hhcCCCCceEEccCCChHh
Q 000975 247 QALKKKKRVLVILDDIWTQINLDDI--GIPFWDGEKQSVDN--QGRWTLLLASRDQHVL--RINMSNPRIFSISTLADGE 320 (1205)
Q Consensus 247 ~~l~~~k~~LlVlDdv~~~~~~~~~--~~~~~~~~~~~~~~--~~~s~ilvTTr~~~v~--~~~~~~~~~~~l~~L~~~e 320 (1205)
..+.+.++++||+|++++...-... ...+...+.+.++. .++++++||+|..... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3444579999999999886431110 00000001111112 4689999999998773 2124445689999999999
Q ss_pred HHHHHHHHh
Q 000975 321 AKSLFEKIV 329 (1205)
Q Consensus 321 ~~~Lf~~~~ 329 (1205)
..+++++..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998875
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.99 E-value=1.1e-08 Score=114.32 Aligned_cols=245 Identities=14% Similarity=0.073 Sum_probs=134.5
Q ss_pred ccccCCChHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 151 YVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
+.+|+|++..++.+..++. ......+.++|++|+|||+||+.+++.... .+ ..+..+.......+ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchhH-HHHH
Confidence 4679999999999888886 233456889999999999999999988652 22 22222211122222 2222
Q ss_pred HHhCCCC-------CCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCch
Q 000975 226 DQLGLEI-------VRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (1205)
Q Consensus 226 ~~l~~~~-------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~ 298 (1205)
..++... +.. ..+....+...+. +.+..+|+|+..+...+... ..+.+-|..||+..
T Consensus 77 ~~~~~~~vl~iDEi~~l--~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~ 140 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRL--SPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAG 140 (305)
T ss_pred HhcccCCEEEEehHhhh--CHHHHHHhhHHHh-hhheeeeeccCccccceeec-------------CCCeEEEEecCCcc
Confidence 2222111 000 0111223333333 34555666665554443321 12345566677765
Q ss_pred hHHhhc-CCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHHHHH
Q 000975 299 HVLRIN-MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINW 377 (1205)
Q Consensus 299 ~v~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~ 377 (1205)
.+...- -.....+++++++.+|..+++.+.++.... .-.+++...|++.|+|.|-.+..++..+ |... .
T Consensus 141 ~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~- 210 (305)
T TIGR00635 141 MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-Q- 210 (305)
T ss_pred ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-H-
Confidence 443210 112356899999999999999998854222 2235677899999999996655444332 1110 0
Q ss_pred HHhcCCCcccccccchhhHHhhhhcCcHHHHHHHH-HhcccCCCCccCHHHH
Q 000975 378 LRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQ-LCGLLNDGSRLPIDDL 428 (1205)
Q Consensus 378 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-~~s~fp~~~~i~~~~l 428 (1205)
..................+...|..++++.+..+. ..+.++.+ .+..+.+
T Consensus 211 ~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~i 261 (305)
T TIGR00635 211 VRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTL 261 (305)
T ss_pred HcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHH
Confidence 00001000111111123356678888888887777 44666543 4444333
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.96 E-value=7.9e-09 Score=115.84 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=134.3
Q ss_pred cCCccccCCChHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (1205)
|..+..|+||+..++.+..++. ....+.+.|+|++|+|||++|+.+++.... .+ .++..+.... ...+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~~~~~-~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGPALEK-PGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecccccC-hHHHH
Confidence 4567889999999988877765 223467889999999999999999998752 21 1222221111 11222
Q ss_pred HHHHHhCCCC----CCCC-CHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCc
Q 000975 223 RIADQLGLEI----VRPD-SLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (1205)
Q Consensus 223 ~i~~~l~~~~----~~~~-~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~ 297 (1205)
.++..++... ++.. -.....+.+...+. +.+..+|+|+..+...+... -.+.+-|..||+.
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~-------------l~~~~li~at~~~ 160 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLD-------------LPPFTLIGATTRA 160 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeec-------------CCCceEEeecCCc
Confidence 3333322110 0000 00011112222222 34444555554433222110 1224556667765
Q ss_pred hhHHhh-cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHHHH
Q 000975 298 QHVLRI-NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAIN 376 (1205)
Q Consensus 298 ~~v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~ 376 (1205)
..+... .-.....++++++++++..+++.+.++.... .-.+++...|++.|+|.|-.+..+...+. .|....
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~- 233 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK- 233 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-
Confidence 443320 0112357899999999999999998854322 22356788999999999954444443321 111110
Q ss_pred HHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHH-HhcccCCCCccCHHHH
Q 000975 377 WLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQ-LCGLLNDGSRLPIDDL 428 (1205)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-~~s~fp~~~~i~~~~l 428 (1205)
................+...+..|++..+..+. ....|+.+ ++..+.+
T Consensus 234 ---~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~ 282 (328)
T PRK00080 234 ---GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTL 282 (328)
T ss_pred ---CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHH
Confidence 000000111111244556777888888788776 66667654 4555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=6.6e-10 Score=109.04 Aligned_cols=128 Identities=26% Similarity=0.376 Sum_probs=38.2
Q ss_pred CCceeEEEeeCCCCCCcccccC-CCcCCcEEEccCCcCCCCccccccccCcEEEcccCCCCccchhc-cCCCccCEEecc
Q 000975 558 MTELLVLHLTGIHFPSLPLSLG-SLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQI-GNLTRLKLLDLS 635 (1205)
Q Consensus 558 l~~Lr~L~Ls~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~ 635 (1205)
..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+..+.+..+++|++|++++|.|+.++..+ ..+++|++|+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 334555555555555443 233 35556666666666655555555666666666666666654444 245666666666
Q ss_pred CCCCCCccCh-hhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 636 NCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 636 ~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+|. +.++.. ..++.+++|++|++.+|.+...+ .....-+..+++|+.||-.
T Consensus 97 ~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS----SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTE
T ss_pred CCc-CCChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCE
Confidence 543 333221 22556666777777666554322 2223345556666666543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=6.1e-11 Score=129.98 Aligned_cols=141 Identities=24% Similarity=0.383 Sum_probs=65.8
Q ss_pred ccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-
Q 000975 519 IPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED- 596 (1205)
Q Consensus 519 l~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~- 596 (1205)
+..|.+..+|... ++..|..|+++.|.++ .+|..+ +. --|++|-+++|+++.+|..++.+.+|..||.+.|.+..
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl 181 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGL-CD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL 181 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccchhh-cCChhh-hc-CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc
Confidence 3344444444433 4444455555554444 344433 11 23445555555555555555544455555555554444
Q ss_pred CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 597 VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 597 ~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
|..+++|..|+.|+++.|++..+|..+.. -.|..||++. +++..+|.. |.+|+.|++|-|.+|...
T Consensus 182 psql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhhhCCHHHhC-Cceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCC
Confidence 44455555555555555555555544442 2344455544 224444443 455555555555554444
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=7e-11 Score=129.49 Aligned_cols=166 Identities=23% Similarity=0.364 Sum_probs=135.5
Q ss_pred CCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 591 (1205)
.....+++.|.+.++|... .|-.|..+.+..|.+. .+|..+ ..+..|.+|||+.|.++.+|..++.|+ |+.|.+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 3455677788888888766 7777888888888876 567665 788889999999999988888888776 88899999
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
|+++. |..++.+.+|..||.+.|.+..+|..++.|.+|+.|++..|+ +..+|++ +..| .|..||++.|.+..+|
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis~iP-- 227 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKISYLP-- 227 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCceeecc--
Confidence 98887 888888888999999999999999889999999999888855 7778776 5644 4788898888888777
Q ss_pred CccchHhhccCCCCcEEEEec
Q 000975 671 SNASVVELKQLSSLTILDMHI 691 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~~ 691 (1205)
..+.+|++|++|-+..
T Consensus 228 -----v~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 228 -----VDFRKMRHLQVLQLEN 243 (722)
T ss_pred -----hhhhhhhhheeeeecc
Confidence 6788888888888763
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=1e-09 Score=107.77 Aligned_cols=134 Identities=24% Similarity=0.292 Sum_probs=42.1
Q ss_pred CCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCC-ccc
Q 000975 522 RDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDV-ARV 600 (1205)
Q Consensus 522 ~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~-~~i 600 (1205)
+.++..+...++.++|.|+|.+|.+. .+. ..-..+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.. ..+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 34444555455566677777777665 332 22124667777777777777665 366677777777777777763 334
Q ss_pred -cccccCcEEEcccCCCCccc--hhccCCCccCEEeccCCCCCCccC---hhhhcCCCCCCEEEc
Q 000975 601 -GDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIK---PEVISRLSRLNELYM 659 (1205)
Q Consensus 601 -~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~~---~~~l~~L~~L~~L~l 659 (1205)
..+++|++|++++|+|..+. ..+..+++|++|++.+|. +...+ ...+..+++|+.||.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 35677777777777666542 235667777777777754 33222 234667788888864
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=3.6e-10 Score=113.78 Aligned_cols=126 Identities=22% Similarity=0.309 Sum_probs=74.1
Q ss_pred hcCCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEE
Q 000975 510 ARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 588 (1205)
.|+.+..+++++|.+..+..+. -.|.+|.|++++|.+. .+.. +..+++|..||||+|.++++-..-.+|-|.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3555666667777666665555 4566666666666654 2322 3556666666666666655544445556666666
Q ss_pred ccCCcCCCCccccccccCcEEEcccCCCCccc--hhccCCCccCEEeccCCC
Q 000975 589 FDCCHLEDVARVGDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 589 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~ 638 (1205)
|++|.|...+.+++|..|.+||+++|+|..+- .+|++|+.|++|.|.+|.
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 66666666666666666666666666665442 345555555555555543
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.84 E-value=1.2e-09 Score=123.83 Aligned_cols=175 Identities=22% Similarity=0.194 Sum_probs=108.2
Q ss_pred CCCcEEEccCCCCCC-----CCCcc-CCCcceEEEeecCCCCC-----CCChhhhhCCCceeEEEeeCCCCC-CcccccC
Q 000975 512 KNPTAISIPFRDISE-----LPDSL-QCTRLKLFLLFTEDSSL-----QIPNQFFDGMTELLVLHLTGIHFP-SLPLSLG 579 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~-----l~~~~-~~~~Lr~L~l~~n~~~~-----~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~ 579 (1205)
..++.+.+.++.+.. ++... ..+.++.++++++.+.. ......+..+++|+.|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 347888888877632 33323 56678888888776542 011123566778888888888876 3344444
Q ss_pred CCcC---CcEEEccCCcCCC------Ccccccc-ccCcEEEcccCCCC-----ccchhccCCCccCEEeccCCCCCCc--
Q 000975 580 SLIN---LRTLSFDCCHLED------VARVGDL-AKLEILSFRNSHIE-----QLPEQIGNLTRLKLLDLSNCSKLKV-- 642 (1205)
Q Consensus 580 ~L~~---Lr~L~L~~~~l~~------~~~i~~L-~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~-- 642 (1205)
.+.+ |++|++++|++.. ...+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|. +..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH
Confidence 4444 8888888888763 1345566 78888888888776 344556677788888888865 442
Q ss_pred ---cChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 643 ---IKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 643 ---~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
++. .+..+++|++|++++|.+..... ......+..+++|+.|+++
T Consensus 182 ~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 182 IRALAE-GLKANCNLEVLDLNNNGLTDEGA--SALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHH-HHHhCCCCCEEeccCCccChHHH--HHHHHHhcccCCCCEEecC
Confidence 222 24556688888888776542110 1111234455666666665
No 41
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=4.1e-07 Score=106.80 Aligned_cols=241 Identities=16% Similarity=0.142 Sum_probs=138.0
Q ss_pred cccCCChHHHHHHHHHhcc----C-CccEEEEEcCCCCcHHHHHHHHHHHHhhc---CCC--cEEEEEEecCCCCHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLRD----S-NVNMIGLYGMGGVGKTTLVKVVARQVVKE---DLF--DVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~----~-~~~vi~i~G~~GiGKTtLa~~v~~~~~~~---~~f--~~~~wv~~~~~~~~~~~~ 221 (1205)
..+.||++++++|...|.. . ...++.|+|++|+|||+.++.|.+..... ... -.+++|++....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4577999999999988862 2 23567899999999999999999876431 111 246788888777888999
Q ss_pred HHHHHHhCCCCCC-CCCHHHHHHHHHHHHHc--CCeEEEEEcccccccc-----cccccCCCCCCCccccCCCCCeEEEE
Q 000975 222 GRIADQLGLEIVR-PDSLVEKANQLRQALKK--KKRVLVILDDIWTQIN-----LDDIGIPFWDGEKQSVDNQGRWTLLL 293 (1205)
Q Consensus 222 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~ilv 293 (1205)
..|.+++....+. .-...+....+...+.. ....+||||+|+.... +-.+.. +. ...+++|+|
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR--~~-------~~s~SKLiL 905 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD--WP-------TKINSKLVL 905 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH--Hh-------hccCCeEEE
Confidence 9999988543322 21334455556555532 2345899999986531 111111 01 223444443
Q ss_pred --ecCchhHH-----hh--cCCCCceEEccCCChHhHHHHHHHHhCCC---CCCCchHHHHHHHHHhcCCChHHHHHHHH
Q 000975 294 --ASRDQHVL-----RI--NMSNPRIFSISTLADGEAKSLFEKIVGDS---AKESDCRAIGVEIVGKCGGLPIAVSTIAN 361 (1205)
Q Consensus 294 --TTr~~~v~-----~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~i~~~~~glPLai~~~~~ 361 (1205)
+|...... .. .++ ...+..++++.+|-.+++..++... ..+..++-+|+.++..-|-.-.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 34332211 10 111 2346779999999999999998531 11222233333344344445566666555
Q ss_pred HhcCC-----CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhc
Q 000975 362 ALKGQ-----STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCG 415 (1205)
Q Consensus 362 ~l~~~-----~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s 415 (1205)
+...+ ..++-+.+.+++. ...+.-....||.+.|-.+..+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE-------------~srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLF-------------DSPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHH-------------hhhHHHHHHcCCHHHHHHHHHHH
Confidence 54322 1122222222221 22344455788888666555443
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=6.8e-10 Score=111.81 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=79.4
Q ss_pred CCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccC
Q 000975 557 GMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSN 636 (1205)
Q Consensus 557 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 636 (1205)
..+.|..||||+|.|+.+.+++.-++.+|.|++++|.|.....+..|++|+.|||++|.++++-.+-.+|-+.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34567778888888887777777777888888888887777667778888888888887777766666777778888877
Q ss_pred CCCCCccChhhhcCCCCCCEEEccCCcCccc
Q 000975 637 CSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (1205)
Q Consensus 637 ~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 667 (1205)
|. +.++. + +++|-+|..|++++|.+.++
T Consensus 362 N~-iE~LS-G-L~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 362 NK-IETLS-G-LRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hh-Hhhhh-h-hHhhhhheeccccccchhhH
Confidence 43 66653 2 67777777888777766544
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=7e-09 Score=117.46 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCCcceEEEeecCCCCCC----CChhhhhCCCceeEEEeeCCCCCC-------cccccCCCcCCcEEEccCCcCCC--Cc
Q 000975 532 QCTRLKLFLLFTEDSSLQ----IPNQFFDGMTELLVLHLTGIHFPS-------LPLSLGSLINLRTLSFDCCHLED--VA 598 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~----~~~~~~~~l~~Lr~L~Ls~~~i~~-------lp~~i~~L~~Lr~L~L~~~~l~~--~~ 598 (1205)
.+.+|+.|++.++.+... ++. .+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 455677888887766321 222 23556667788887776652 23456667788888888877653 34
Q ss_pred ccccccc---CcEEEcccCCCC-----ccchhccCC-CccCEEeccCCCCCC-----ccChhhhcCCCCCCEEEccCCcC
Q 000975 599 RVGDLAK---LEILSFRNSHIE-----QLPEQIGNL-TRLKLLDLSNCSKLK-----VIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 599 ~i~~L~~---L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~L~~~~~l~-----~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
.+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|. ++ .++ ..+..+++|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALA-KALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHH-HHHHhCCCcCEEECcCCCC
Confidence 4444444 888888877765 223445566 777888888765 33 121 2255667788888777655
Q ss_pred ccccCCCccchHhhccCCCCcEEEEe
Q 000975 665 RKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 665 ~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
... ........+..+++|+.|+++
T Consensus 178 ~~~--~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 178 GDA--GIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred chH--HHHHHHHHHHhCCCCCEEecc
Confidence 420 001111234445566666665
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=9e-08 Score=102.19 Aligned_cols=171 Identities=16% Similarity=0.243 Sum_probs=103.1
Q ss_pred cCCccccCCChHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHH
Q 000975 148 VRGYVHFPSRNPVF---QKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGR 223 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 223 (1205)
|....+++|.+..+ .-|-.++..+...-..+||++|+||||||+.++.... ..| ..++... +++++ +.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdl-r~ 91 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDL-RE 91 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHH-HH
Confidence 44445555544333 1223344456677777999999999999999999765 444 3333332 23333 22
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEE--ecCchh
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQH 299 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilv--TTr~~~ 299 (1205)
++ +.-++....+++.+|++|+|..- .+-+.+.+. -..|.-|+| ||-++.
T Consensus 92 i~-----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~----------vE~G~iilIGATTENPs 144 (436)
T COG2256 92 II-----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH----------VENGTIILIGATTENPS 144 (436)
T ss_pred HH-----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh----------hcCCeEEEEeccCCCCC
Confidence 22 22223333478999999999764 233334322 245666666 666654
Q ss_pred HH--hhcCCCCceEEccCCChHhHHHHHHHHhCC-----CCCCC-chHHHHHHHHHhcCCCh
Q 000975 300 VL--RINMSNPRIFSISTLADGEAKSLFEKIVGD-----SAKES-DCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 300 v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~-~~~~~~~~i~~~~~glP 353 (1205)
.. ..-.....++++++|+.+|-.+++.+.+.+ ..... -.+++...|++.++|--
T Consensus 145 F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 145 FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 32 112456789999999999999999996521 11111 22456778888888855
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=2e-07 Score=107.86 Aligned_cols=179 Identities=13% Similarity=0.206 Sum_probs=108.8
Q ss_pred ccCCccccCCChHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQK---MMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICG 222 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~ 222 (1205)
.|....+++|++..+.. +..++.....+.+.++|++|+||||+|+.+++... ..| +.++... ...++ +
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~-----~~l~a~~~~~~~i-r 78 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APF-----EALSAVTSGVKDL-R 78 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE-----EEEecccccHHHH-H
Confidence 34556778898887665 77777766777888999999999999999998764 332 2222211 11111 1
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEE--ecCch
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQ 298 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv--TTr~~ 298 (1205)
.+. +........+++.+|++|+++... ..+.+...+ ..+..++| ||.+.
T Consensus 79 ~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----------e~~~iilI~att~n~ 131 (413)
T PRK13342 79 EVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----------EDGTITLIGATTENP 131 (413)
T ss_pred HHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----------hcCcEEEEEeCCCCh
Confidence 221 112222223578899999998753 223332221 12334444 34443
Q ss_pred hHH--hhcCCCCceEEccCCChHhHHHHHHHHhCCC-CCC-CchHHHHHHHHHhcCCChHHHHHHH
Q 000975 299 HVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDS-AKE-SDCRAIGVEIVGKCGGLPIAVSTIA 360 (1205)
Q Consensus 299 ~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~-~~~~~~~~~i~~~~~glPLai~~~~ 360 (1205)
... ..-......+++.++++++...++.+.+... ... .-.+++...|++.++|.+..+.-+.
T Consensus 132 ~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 132 SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 211 1113344789999999999999999876321 111 2335677889999999986654443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.64 E-value=7.8e-08 Score=105.81 Aligned_cols=58 Identities=24% Similarity=0.471 Sum_probs=33.9
Q ss_pred cCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccc
Q 000975 945 FPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQ 1014 (1205)
Q Consensus 945 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 1014 (1205)
+++++.|++++|.++.++ .+| ++|++|.+++|++++.+|. .+ .++|+.|+|++|..+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP------~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLP------NELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCC------CCCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccc
Confidence 466667777777666654 222 3567777777766666642 11 2466666666665554
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.58 E-value=4.7e-07 Score=95.44 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=92.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+.+.++|++|+|||+||+.+++....+ ...+.|+++.... .. ...+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~---------------------~~~~~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF---------------------SPAVLENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh---------------------hHHHHhhcc-
Confidence 34678999999999999999999987533 3345677664210 00 011222222
Q ss_pred CCeEEEEEcccccc---ccccc-ccCCCCCCCccccCCCCCeEEEE-ecCc---------hhHHhhcCCCCceEEccCCC
Q 000975 252 KKRVLVILDDIWTQ---INLDD-IGIPFWDGEKQSVDNQGRWTLLL-ASRD---------QHVLRINMSNPRIFSISTLA 317 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~s~ilv-TTr~---------~~v~~~~~~~~~~~~l~~L~ 317 (1205)
+.-+||+||+|.. ..|+. +...+.. . ...|..+|| |++. +.+.. .+.....+++++++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~-----~-~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd 162 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNR-----I-KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLT 162 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHH-----H-HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCC
Confidence 3358999999974 33432 2111111 0 123455554 4443 23333 24445689999999
Q ss_pred hHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 318 DGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 318 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
+++.++++++.+.... -.-.+++..-|++++.|-.-++..+
T Consensus 163 ~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 163 DEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 9999999999884321 2223567788999988876555443
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.9e-06 Score=99.74 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=116.8
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 206 (1205)
.+..+.+++|.+..++.|.+++..++ ...+.++|..|+||||+|+.+.+...-. +.|.-+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 45667789999999999999987655 4566799999999999999998876321 112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCccccC
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ 284 (1205)
++++.+....+.++ +.+++.... .-..++.-++|||+++.... ++.+...+-.
T Consensus 91 iEIDAas~rgVDdI-ReLIe~a~~-----------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE------- 145 (830)
T PRK07003 91 VEMDAASNRGVDEM-AALLERAVY-----------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEE------- 145 (830)
T ss_pred EEecccccccHHHH-HHHHHHHHh-----------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHh-------
Confidence 44443332222222 112111110 00113455889999988743 4544332211
Q ss_pred CCCCeEEEEecCchhHH-hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHHHHH
Q 000975 285 NQGRWTLLLASRDQHVL-RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTI 359 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 359 (1205)
.....++|+||++..-. ..-......++++.++.++..+.+.+.++.+.. .-.++....|++.++|.. -|+.++
T Consensus 146 PP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 146 PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred cCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23467878877776533 211344578999999999999999998754322 223566788999999865 455543
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=4.8e-08 Score=113.81 Aligned_cols=167 Identities=27% Similarity=0.372 Sum_probs=111.7
Q ss_pred CCCcEEEccCCCCCCCCCccCCC--cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 512 KNPTAISIPFRDISELPDSLQCT--RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
..+..+++.++.+..++...... +|+.|++++|.+. .+|.. ...++.|+.|++++|.+.++|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 45677777777777777766443 6777777777765 44322 36677777777777777777776667777777777
Q ss_pred cCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcccc
Q 000975 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 590 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
++|.+.. |..++.+.+|++|.+++|.+..++..+.++.++..|.+.+|. +..++.. ++.+.+|+.|++++|.+..++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccccccc
Confidence 7777777 555566666777777777666666667777777777766643 4443332 677777777777777666544
Q ss_pred CCCccchHhhccCCCCcEEEEe
Q 000975 669 GQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 669 ~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+.+|+.|+++
T Consensus 272 --------~~~~~~~l~~L~~s 285 (394)
T COG4886 272 --------SLGSLTNLRELDLS 285 (394)
T ss_pred --------cccccCccCEEecc
Confidence 25566666666654
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-08 Score=107.45 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=117.0
Q ss_pred cCCCcEEEccCCCCCCCCC--cc-CCCcceEEEeecCCCCC-CCChhhhhCCCceeEEEeeCCCCCCcccc--cCCCcCC
Q 000975 511 RKNPTAISIPFRDISELPD--SL-QCTRLKLFLLFTEDSSL-QIPNQFFDGMTELLVLHLTGIHFPSLPLS--LGSLINL 584 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~--~~-~~~~Lr~L~l~~n~~~~-~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~L 584 (1205)
.+++|.+++.++.....+. .. .|+++|.|+|+.|-+.. ..-..+...+++|+.|+|+.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4577888888877766653 22 88899999998886542 12234567888999999998887643222 2367788
Q ss_pred cEEEccCCcCCC--C-ccccccccCcEEEcccCC-CCccchhccCCCccCEEeccCCCCCCccC-hhhhcCCCCCCEEEc
Q 000975 585 RTLSFDCCHLED--V-ARVGDLAKLEILSFRNSH-IEQLPEQIGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYM 659 (1205)
Q Consensus 585 r~L~L~~~~l~~--~-~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~L~~~~~l~~~~-~~~l~~L~~L~~L~l 659 (1205)
+.|.|++|.++. . ...-.+++|+.|+|.+|. +..-......+..|+.|||++|+.+ +++ ....+.++.|+.|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhc
Confidence 889999998875 2 445567888888888883 3222233456778888888887644 333 223678888888888
Q ss_pred cCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 660 GNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+.+.+..+..............++|+.|++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecc
Confidence 8776665443333333334445555555554
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-08 Score=108.75 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=125.8
Q ss_pred hcCCCcEEEccCCCCCCCCCcc----CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC--CcccccCCCcC
Q 000975 510 ARKNPTAISIPFRDISELPDSL----QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP--SLPLSLGSLIN 583 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~----~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~ 583 (1205)
...++|.|+++.|-+....... .+++|+.|+++.|.+........-..+++|+.|.|+.|+++ ++-.....+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 4567889999988765544332 78999999999998764443333346889999999999998 45555677899
Q ss_pred CcEEEccCCc-CCC-CccccccccCcEEEcccCCCCccc--hhccCCCccCEEeccCCCCCCccC--hh----hhcCCCC
Q 000975 584 LRTLSFDCCH-LED-VARVGDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIK--PE----VISRLSR 653 (1205)
Q Consensus 584 Lr~L~L~~~~-l~~-~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~~--~~----~l~~L~~ 653 (1205)
|..|+|..|. +.. ......++.|+.|||++|++..++ ..++.|+.|..|+++.|. +.++. +. .....++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccccc
Confidence 9999999995 222 456667889999999999888776 458899999999999865 55532 11 1256789
Q ss_pred CCEEEccCCcCccccCCCccchHhhccCCCCcEEE
Q 000975 654 LNELYMGNSFTRKVEGQSNASVVELKQLSSLTILD 688 (1205)
Q Consensus 654 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 688 (1205)
|+.|++..|.+...+. +.++..+.+|+.|.
T Consensus 303 L~~L~i~~N~I~~w~s-----l~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRS-----LNHLRTLENLKHLR 332 (505)
T ss_pred ceeeecccCccccccc-----cchhhccchhhhhh
Confidence 9999999988765442 34444455555444
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=3.2e-07 Score=88.00 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=83.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc---CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE---DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA 248 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 248 (1205)
+.+.+.|+|.+|+|||++++.++...... ..-..++|+.++...+...+...|+++++.......+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999986421 113466799999888999999999999998877744677777888888
Q ss_pred HHcCCeEEEEEcccccc-c--ccccccCCCCCCCccccCCCCCeEEEEecCc
Q 000975 249 LKKKKRVLVILDDIWTQ-I--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (1205)
Q Consensus 249 l~~~k~~LlVlDdv~~~-~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~ 297 (1205)
+.+.+..+||+||++.. . .++.+.. +-+..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~---------l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS---------LLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH---------HTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH---------HHhCCCCeEEEEECh
Confidence 88767789999999886 2 1122211 113567777777665
No 53
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=2.4e-07 Score=99.87 Aligned_cols=289 Identities=21% Similarity=0.237 Sum_probs=183.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+-+.++|.|||||||++-.+.. .+ ..+-+.+.++...+-.+...+.-.+...++......++ ....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~-~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~---~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA-SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS---AVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh-hhcccceeeeeccccCchhHhHHHHHhhcccccccchH---HHHHHHHHHh-
Confidence 357899999999999999999998 43 14447888888888888888888888888877655322 2333444444
Q ss_pred CCeEEEEEcccccccc-cccccCCCCCCCccccCCCCCeEEEEecCchhHHhhcCCCCceEEccCCChH-hHHHHHHHHh
Q 000975 252 KKRVLVILDDIWTQIN-LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRIFSISTLADG-EAKSLFEKIV 329 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~~~-~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~ 329 (1205)
++|.++|+||-.+... -......+-. +.+.-.|+.|+|.... ......+.+.+|+.. ++.++|...+
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~-------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLG-------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHc-------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHH
Confidence 6899999999766521 1111111111 4455678888888753 344567788888775 7999988877
Q ss_pred CC----CCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHHHH----HHHhcCCCccccc-ccc-hhhHHhh
Q 000975 330 GD----SAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAIN----WLRKSNPRKIKGM-DAD-LSSIELS 399 (1205)
Q Consensus 330 ~~----~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~----~l~~~~~~~~~~~-~~~-~~~l~~s 399 (1205)
.. -.-.........+|.++.+|.|++|..+++..+.-...+-.+.++ .+... ...... +.- ...+.+|
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~--~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG--ARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc--cccchhHHHhccchhhhh
Confidence 22 112333456788999999999999999999998774443322222 11111 111111 122 7899999
Q ss_pred hhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhHHHHHHHHHHHHHhhccccccccCC--CCCcEEEe
Q 000975 400 YKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGD--TEDHVKMH 477 (1205)
Q Consensus 400 y~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mH 477 (1205)
|.-|....+-.|.-++.|...+... ...|.+-| -.. ....-.+...+..+++++++...+ ..-.|+.-
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g-~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~ 303 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG----LALAVAAG-ADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLL 303 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcC-Ccc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHH
Confidence 9999999999999999998865544 33455555 110 001111222344566677664321 22235555
Q ss_pred hHHHHHHHHHhc
Q 000975 478 QIIHALAVLIAS 489 (1205)
Q Consensus 478 dlv~~~~~~~~~ 489 (1205)
+-+|.|+..+-.
T Consensus 304 eT~r~YalaeL~ 315 (414)
T COG3903 304 ETGRRYALAELH 315 (414)
T ss_pred HHHHHHHHHHHH
Confidence 566666655444
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=7.3e-08 Score=112.29 Aligned_cols=102 Identities=31% Similarity=0.472 Sum_probs=47.3
Q ss_pred CceeEEEeeCCCCCCcccccCCCc-CCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccC
Q 000975 559 TELLVLHLTGIHFPSLPLSLGSLI-NLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSN 636 (1205)
Q Consensus 559 ~~Lr~L~Ls~~~i~~lp~~i~~L~-~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 636 (1205)
..++.|++.++.+.++|.....+. +|+.|++++|.+.. +..++.+++|+.|++++|++..+|...+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 444444444444444444444442 45555555444444 2444444555555555554444444444444444555444
Q ss_pred CCCCCccChhhhcCCCCCCEEEccCC
Q 000975 637 CSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 637 ~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
|. +..+|.. ++.+..|++|.+++|
T Consensus 196 N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 196 NK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred Cc-cccCchh-hhhhhhhhhhhhcCC
Confidence 32 4444432 233334444444444
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.5e-05 Score=89.06 Aligned_cols=286 Identities=19% Similarity=0.228 Sum_probs=164.8
Q ss_pred cCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhC
Q 000975 154 FPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (1205)
+.+|+.+++++...|. .....-+.|+|.+|+|||+.++.+....+....-..+++|++....+..+++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999998875 233344899999999999999999999875322222899999999999999999999997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCeEEEEEcccccccccc-cccCCCCCCCccccCCCCCeEEE--EecCchhHHhh--
Q 000975 230 LEIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQINLD-DIGIPFWDGEKQSVDNQGRWTLL--LASRDQHVLRI-- 303 (1205)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~-~~~~~~~~~~~~~~~~~~~s~il--vTTr~~~v~~~-- 303 (1205)
..+....+..+....+.+.+.. ++.+++|||+++....-. +....+.. .+....++|+ ..+-+......
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r-----~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR-----APGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh-----hccccceeEEEEEEeccHHHHHHhh
Confidence 4444444667777788887765 688999999998763221 11000000 0112244433 33333322210
Q ss_pred -----cCCCCceEEccCCChHhHHHHHHHHhC----CCCCCCchHHHHHHHHHhcC-CChHHHHHHHHHh--cCC-----
Q 000975 304 -----NMSNPRIFSISTLADGEAKSLFEKIVG----DSAKESDCRAIGVEIVGKCG-GLPIAVSTIANAL--KGQ----- 366 (1205)
Q Consensus 304 -----~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~~~-glPLai~~~~~~l--~~~----- 366 (1205)
..+ ...+..++-+.+|-...+..++. .....++.-+.+..++..-+ -.-.||.++-.+. +.+
T Consensus 174 ~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 174 PRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred hhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCC
Confidence 122 23478999999999999999982 22223333333334444444 3344544443332 111
Q ss_pred -CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhH
Q 000975 367 -STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTL 445 (1205)
Q Consensus 367 -~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 445 (1205)
+.+.-..+..... .....-....||.+.|-.+......- ..+....+...... +......
T Consensus 253 v~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~---~~~~~~~- 313 (366)
T COG1474 253 VSEDHVREAQEEIE-------------RDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYES---LCERLRT- 313 (366)
T ss_pred cCHHHHHHHHHHhh-------------HHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHH---HHhhhCc-
Confidence 1111111111100 33444557888887766654443331 22443433332110 0111111
Q ss_pred HHHHHHHHHHHHhhccccccc
Q 000975 446 EVARNRVYTLMDHLKGPCLLL 466 (1205)
Q Consensus 446 ~~~~~~~~~~~~~L~~~~l~~ 466 (1205)
....+.+++.+|...+++.
T Consensus 314 --~~~~~~~ii~~L~~lgiv~ 332 (366)
T COG1474 314 --SQRRFSDIISELEGLGIVS 332 (366)
T ss_pred --hHHHHHHHHHHHHhcCeEE
Confidence 4456667778777777664
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=2.3e-06 Score=97.47 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=112.9
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-cEEEEEEecCCCCH-HHHHH-
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF-DVVVDAEVTHTPDW-KEICG- 222 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~- 222 (1205)
..|..+..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.... ..+ ...+.++++..... .....
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhc
Confidence 345566778999999999999888766667889999999999999999987642 222 12345554432100 00000
Q ss_pred --HHHHHhCCCCCCCCCHHHHHHHHHHHHHc-----CCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEE
Q 000975 223 --RIADQLGLEIVRPDSLVEKANQLRQALKK-----KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLL 293 (1205)
Q Consensus 223 --~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilv 293 (1205)
...+.++..........+..+.+.+.... ..+-+||+||++.... ...+...+-. ....+++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~~~~~~~Il 160 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------YSRTCRFII 160 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------ccCCCeEEE
Confidence 00000000000000112223333222211 2345899999976521 2222211111 233467777
Q ss_pred ecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 294 ASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 294 TTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
||.... +...-......+++.+++.++....+.+.+...... -..+....+++.++|.+-.+
T Consensus 161 ~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred EeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 775433 211112334678999999999999998877332111 23567788999998876444
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=4.3e-06 Score=94.81 Aligned_cols=179 Identities=12% Similarity=0.163 Sum_probs=109.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 206 (1205)
.|..+.+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++...-... +...
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 355667889999999998888875543 56789999999999999999987641110 1111
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCc
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEK 280 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 280 (1205)
.+++.+.... .+....+.+.+. .+++-++|+|+++... .++.+...+-.
T Consensus 91 ~~~~~~~~~~----------------------v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe--- 145 (363)
T PRK14961 91 IEIDAASRTK----------------------VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE--- 145 (363)
T ss_pred EEecccccCC----------------------HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc---
Confidence 2222211111 122233333322 1355689999998764 34444333222
Q ss_pred cccCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 281 QSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
.....++|++|.+.. +...-.+....+++++++.++..+.+.+.+.... ..-.++.+..|++.++|.|-.
T Consensus 146 ----~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 146 ----PPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred ----CCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 234566777665543 3221133456899999999999999888763321 112245677899999998853
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.46 E-value=1.4e-06 Score=92.68 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 000975 156 SRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP 235 (1205)
Q Consensus 156 gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 235 (1205)
+.+..++.+..++.....+.|.|+|++|+|||++|+.+++.... .....++++++.-... .
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHh------H-----------
Confidence 34556777777765555678999999999999999999988652 3345567765432210 0
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEEccccccc---ccc-cccCCCCCCCccccCCCCCeEEEEecCchhH---------Hh
Q 000975 236 DSLVEKANQLRQALKKKKRVLVILDDIWTQI---NLD-DIGIPFWDGEKQSVDNQGRWTLLLASRDQHV---------LR 302 (1205)
Q Consensus 236 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v---------~~ 302 (1205)
..+...+. +.-+|||||++... .|. .+...+.. . ...+.++|+||+.... ..
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~-----~-~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR-----V-REAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH-----H-HHcCCeEEEECCCChHHCCcccHHHHH
Confidence 01111222 23489999998754 222 22211110 0 1233478888875431 11
Q ss_pred hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHH
Q 000975 303 INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (1205)
Q Consensus 303 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 360 (1205)
.......+++.++++++...++++.+.... ..-.+++.+.|++.+.|.|..+.-+.
T Consensus 147 -r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 147 -RLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred -HHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 122246799999999999999987652111 12234566788888999887665553
No 59
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=3.8e-07 Score=86.51 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=81.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
.+++.|.|+-|+||||++++++.+.. ....++|++..+........ .+..+.+.+... .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PDLLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hhhHHHHHHhhc-c
Confidence 46899999999999999999998865 34567788776643211100 001222333222 3
Q ss_pred CeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHHhh-----cCCCCceEEccCCChHhH
Q 000975 253 KRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI-----NMSNPRIFSISTLADGEA 321 (1205)
Q Consensus 253 k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~-----~~~~~~~~~l~~L~~~e~ 321 (1205)
++.+++||+|....+|......+.+ ..+..+|++|+........ -.+....++|.||+-.|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6788999999999888876555544 4457899999998776531 123345789999998773
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=1.2e-05 Score=94.96 Aligned_cols=187 Identities=16% Similarity=0.178 Sum_probs=113.6
Q ss_pred cccCCccccCCChHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRD----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
..|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++-++++....... .
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i 81 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-I 81 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-H
Confidence 4566677899999999999998862 2267899999999999999999999863 32 34445554333222 2
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------cccccCCCCCCCccccCCCCCeEEEEec
Q 000975 222 GRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------LDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
..++....... .+...++-+||+|+++.... +..+...+ ...+..||+|+
T Consensus 82 ~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l---------~~~~~~iIli~ 137 (482)
T PRK04195 82 ERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELI---------KKAKQPIILTA 137 (482)
T ss_pred HHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHH---------HcCCCCEEEec
Confidence 22222211000 01112577999999987532 22221111 12344567776
Q ss_pred CchhHHh--hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHh
Q 000975 296 RDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (1205)
Q Consensus 296 r~~~v~~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 363 (1205)
.+..-.. .-......+++.+++.++....+.+.+...... -..++...|++.++|-.-.+......+
T Consensus 138 n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 138 NDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred cCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5432111 012334678999999999999988877322111 124677899999999775554333333
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=3.8e-07 Score=110.95 Aligned_cols=101 Identities=19% Similarity=0.355 Sum_probs=58.9
Q ss_pred eeEEEeeCCCCC-CcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccCCCC-ccchhccCCCccCEEeccC
Q 000975 561 LLVLHLTGIHFP-SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLTRLKLLDLSN 636 (1205)
Q Consensus 561 Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~ 636 (1205)
++.|+|++|.+. .+|..++++++|++|+|++|.+.. |..++.+++|++|+|++|++. .+|..+++|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666655 455556666666666666666554 455666666666666666665 4566666666666666666
Q ss_pred CCCCCccChhhhcC-CCCCCEEEccCC
Q 000975 637 CSKLKVIKPEVISR-LSRLNELYMGNS 662 (1205)
Q Consensus 637 ~~~l~~~~~~~l~~-L~~L~~L~l~~~ 662 (1205)
|.....+|.. ++. +.++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 5533345443 333 234555655554
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.44 E-value=2e-06 Score=96.07 Aligned_cols=184 Identities=16% Similarity=0.136 Sum_probs=108.3
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc-EEEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 224 (1205)
..|....+++|.+..++.+..++.....+-+.++|++|+||||+|+.+++...- ..|. .++-++.+....... .+.+
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~-vr~~ 84 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDV-VRNK 84 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHH-HHHH
Confidence 456667788999988888888877666667889999999999999999988632 2222 223333333322222 2222
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEEecCchh-HH
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VL 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-v~ 301 (1205)
.+.+..... ....++.-++|+|+++.... ...+...+-. ....+++++++.... +.
T Consensus 85 i~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------~~~~t~~il~~n~~~~i~ 143 (319)
T PLN03025 85 IKMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------YSNTTRFALACNTSSKII 143 (319)
T ss_pred HHHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------ccCCceEEEEeCCccccc
Confidence 221110000 00013466899999987632 1222111111 134567777665432 11
Q ss_pred hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
..-......++++++++++....+.+.+...... -.++....|++.++|-.
T Consensus 144 ~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 144 EPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDM 194 (319)
T ss_pred hhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCH
Confidence 1002234579999999999999999887432211 12456788999998865
No 63
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=1.8e-05 Score=86.61 Aligned_cols=166 Identities=13% Similarity=0.182 Sum_probs=106.0
Q ss_pred cccCCccccCCChHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (1205)
..|.+..+|+||++++..+...|.+ +..+++.|+|++|+|||||++.+..... + ..++++.. +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 3466677999999999999988862 2245889999999999999999996543 1 23333333 6799999
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHH----c-CCeEEEEEcccccccccccc---cCCCCCCCccccCCCCCeEEEEe
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALK----K-KKRVLVILDDIWTQINLDDI---GIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
.|+++||.+... ...+....+.+.+. . +++.+||+- ..+...+... ...+.. ...-|.|++-
T Consensus 328 ~LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~-------drr~ch~v~e 397 (550)
T PTZ00202 328 SVVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALAC-------DRRLCHVVIE 397 (550)
T ss_pred HHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHc-------cchhheeeee
Confidence 999999984332 33445555555543 2 566677764 1221111110 011111 3455677765
Q ss_pred cCchhHH--hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 295 SRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 295 Tr~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
---+... ....+.-..|-++.++.++|.++..+..
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 4333322 2234556689999999999998877665
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=6e-07 Score=98.96 Aligned_cols=136 Identities=19% Similarity=0.273 Sum_probs=89.0
Q ss_pred cCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCC
Q 000975 972 SSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGI 1051 (1205)
Q Consensus 972 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 1051 (1205)
.+.+++.|+|++| .|+++|. -.++|++|.|++|++++.++. ..+++|+.|+|++|.++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sLP- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGLP- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCcccccccc-
Confidence 3578999999998 8998862 235799999999999987753 236899999999998887665
Q ss_pred CcccCCCCcceeeecc--CcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcc
Q 000975 1052 GNLVELPSLRQLSINF--CPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSF 1129 (1205)
Q Consensus 1052 ~~l~~l~~L~~L~i~~--C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l 1129 (1205)
++|+.|++.+ |..+..+| ++|+.|.+.++....... . +....
T Consensus 112 ------~sLe~L~L~~n~~~~L~~LP---------------------------ssLk~L~I~~~n~~~~~~-l--p~~LP 155 (426)
T PRK15386 112 ------ESVRSLEIKGSATDSIKNVP---------------------------NGLTSLSINSYNPENQAR-I--DNLIS 155 (426)
T ss_pred ------cccceEEeCCCCCcccccCc---------------------------chHhheeccccccccccc-c--ccccC
Confidence 4577777764 33345444 456666665432111000 0 00112
Q ss_pred cCccEEEecccccccccccchhHhhccCCcEEEEecC
Q 000975 1130 SKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIEC 1166 (1205)
Q Consensus 1130 ~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C 1166 (1205)
++|+.|.|++|..+. +|.. -+.+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~--LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII--LPEK---LPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc--Cccc---ccccCcEEEeccc
Confidence 577777777777554 4542 3467777777654
No 65
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.42 E-value=4.6e-06 Score=87.83 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=124.1
Q ss_pred ccccCCChHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc----EEEEEEecCCCCHHHHHHH
Q 000975 151 YVHFPSRNPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD----VVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~---~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~ 223 (1205)
++++-.-.+.++.+.+.+.. ...+-+.|||.+|+|||++++++...+.....-+ .|+.|.+...++...++..
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 33443334455666666652 3456799999999999999999998765322112 4778888999999999999
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCCCCCCCccccCCCCCeEEEEe
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---------LDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
|+.+++.+....++.......+...++.-+--+||+|++.+.-. ++.+ ..+.+ .-.-+-|.|-
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~N-------eL~ipiV~vG 187 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGN-------ELQIPIVGVG 187 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhh-------ccCCCeEEec
Confidence 99999999877666666666666667665667899999987411 1111 11111 1233456666
Q ss_pred cCchhHHhh----cCCCCceEEccCCChHhHHHHHHHHh----C-CCCCCCchHHHHHHHHHhcCCChHH
Q 000975 295 SRDQHVLRI----NMSNPRIFSISTLADGEAKSLFEKIV----G-DSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 295 Tr~~~v~~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~----~-~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
|++-.-+-. --+....+.++....++-..-|.... . .....-...++++.|...++|+.=-
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 665433310 01224567777777665444333333 1 1112223467899999999998743
No 66
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.41 E-value=5.2e-06 Score=103.55 Aligned_cols=267 Identities=14% Similarity=0.169 Sum_probs=149.7
Q ss_pred cCCChHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCcEEEEEEecCCC---CHHHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEVTHTP---DWKEICGRIAD 226 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~---~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~---~~~~~~~~i~~ 226 (1205)
++||+.+++.|...+. .....++.+.|.+|||||+++++|......+ +.|-.-.+-...... ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6799999999998886 3456799999999999999999999987532 221111111111111 11222333322
Q ss_pred Hh-------------------CCCCCC------------------CC----CHHH-----HHHHHHHHHHcCCeEEEEEc
Q 000975 227 QL-------------------GLEIVR------------------PD----SLVE-----KANQLRQALKKKKRVLVILD 260 (1205)
Q Consensus 227 ~l-------------------~~~~~~------------------~~----~~~~-----~~~~l~~~l~~~k~~LlVlD 260 (1205)
++ |..... .+ .... ....+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 211100 00 0011 12223333344579999999
Q ss_pred ccccccc--cccccCCCCCCCc--cccCCCCCeEEEEecCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCC
Q 000975 261 DIWTQIN--LDDIGIPFWDGEK--QSVDNQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKE 335 (1205)
Q Consensus 261 dv~~~~~--~~~~~~~~~~~~~--~~~~~~~~s~ilvTTr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 335 (1205)
|+.-.+. ++-+...... .. .+ .....-.+.|.+.. ............+.+.||+..+...+.....+....
T Consensus 162 DlhWaD~~SL~lL~~lm~~-~~~~~~--~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDR-IAIGAY--RDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred cccccChhHHHHHHHHHHh-cchhhh--hccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 9854321 1111000000 00 00 00111122233322 111112344578999999999999999999876322
Q ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHhcCC-------CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHH
Q 000975 336 SDCRAIGVEIVGKCGGLPIAVSTIANALKGQ-------STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQ 408 (1205)
Q Consensus 336 ~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k 408 (1205)
...+....|+++..|+|+-+.-+-.++... +...|..-...+.. ....+.....+..-.+.||...+
T Consensus 238 -~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 -LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred -ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHHHH
Confidence 234667899999999999998888888654 22334332222111 11122223457788899999999
Q ss_pred HHHHHhcccCCCCccCHHHHHHHH
Q 000975 409 FLFQLCGLLNDGSRLPIDDLIRYV 432 (1205)
Q Consensus 409 ~~f~~~s~fp~~~~i~~~~li~~w 432 (1205)
+.+...|++-.. |+.+.|...|
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHH
Confidence 999999999432 5555555433
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=6.7e-06 Score=91.65 Aligned_cols=177 Identities=12% Similarity=0.174 Sum_probs=113.7
Q ss_pred ccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHh----hcCCCcEEEEEEe-cCCCCHHHHHHHH
Q 000975 151 YVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVV----KEDLFDVVVDAEV-THTPDWKEICGRI 224 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i 224 (1205)
+.+++|.+..++.+.+++..+. .+...++|+.|+||||+|+.++...- ...|+|...|... +....+.++ +++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHH
Confidence 3467898999999999987555 45678999999999999999998652 2356676666542 233333343 233
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEEecCchhHH-
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~- 301 (1205)
.+.+..... .+++-++|+|+++.. ..++.+...+-. ...++.+|++|.+....
T Consensus 82 ~~~~~~~p~-----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 82 IEEVNKKPY-----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHHhcCcc-----------------cCCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCc
Confidence 333322111 134556677776544 446666544443 35678888888766432
Q ss_pred hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHH
Q 000975 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
..-......+++.++++++....+.+.... ..++.+..++..++|.|..+.
T Consensus 138 ~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 138 DTIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 111334568999999999998888776531 113446788999999986554
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.2e-06 Score=99.79 Aligned_cols=187 Identities=14% Similarity=0.196 Sum_probs=113.8
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 206 (1205)
.|..+..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++...-... |.-+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4566778999999999999888766554 4589999999999999999987642111 1112
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccC
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 284 (1205)
++++......+.++ +.|.+.+ ...-..+++-++|||+++... ..+.+...+-.
T Consensus 91 iEidAas~~kVDdI-ReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE------- 145 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE------- 145 (944)
T ss_pred EEeccccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 33322211122221 2222211 111112567799999998762 33443222211
Q ss_pred CCCCeEEEEecCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHHHH
Q 000975 285 NQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTI 359 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 359 (1205)
.....++|++|.+. .+...-......|++++++.++....+.+.+.... ..-..+....|++.++|.|- |+.++
T Consensus 146 PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 146 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred cCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12445666655544 33321234457899999999999999998874321 12234677889999999885 44443
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=7.2e-06 Score=95.01 Aligned_cols=190 Identities=16% Similarity=0.246 Sum_probs=110.5
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 206 (1205)
.|..+..++|.+.....+...+..+.. +.+.++|++|+||||+|+.+++....... +..+
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 456677899999888888887776655 45789999999999999999887542110 1112
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccC
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 284 (1205)
+.++++....+.++ +.|.+.... .-..+++-++|+|+++... ..+.+...+-.
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~-----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~------- 143 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY-----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE------- 143 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh-----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------
Confidence 33333322222222 122221110 0011466799999997652 23333222211
Q ss_pred CCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC-ChHHHHHHHHH
Q 000975 285 NQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIAVSTIANA 362 (1205)
Q Consensus 285 ~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~~ 362 (1205)
......+|++|.+ ..+...-......+++.+++.++....+.+.+..... .-.+++...|++.++| .+.|+..+-.+
T Consensus 144 p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 144 PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1233444444443 3333212344578999999999999999888732211 1224567788887765 45666666543
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.1e-06 Score=97.20 Aligned_cols=181 Identities=14% Similarity=0.189 Sum_probs=112.2
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC------------------------
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED------------------------ 201 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~------------------------ 201 (1205)
.+..+.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+...-..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 456677899999999999999986654 4678999999999999999998764210
Q ss_pred CCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCC
Q 000975 202 LFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPF 275 (1205)
Q Consensus 202 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~ 275 (1205)
.|.-+++++......+. .+..+.+... .++.-++|||+++... .++.+...+
T Consensus 91 ~hpDviEIdAas~~gVD----------------------dIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL 148 (700)
T PRK12323 91 RFVDYIEMDAASNRGVD----------------------EMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL 148 (700)
T ss_pred CCCcceEecccccCCHH----------------------HHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh
Confidence 01112233322222222 2222222221 2466689999998763 344443322
Q ss_pred CCCCccccCCCCCeEEEE-ecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 276 WDGEKQSVDNQGRWTLLL-ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 276 ~~~~~~~~~~~~~s~ilv-TTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
-. -..++++|+ ||....+...-......+.++.++.++..+.+.+.++.+... ...+....|++.++|.|.
T Consensus 149 EE-------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 149 EE-------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMR 220 (700)
T ss_pred cc-------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 11 123445555 444444442223445789999999999999999887432222 224556789999999995
Q ss_pred HHH
Q 000975 355 AVS 357 (1205)
Q Consensus 355 ai~ 357 (1205)
-..
T Consensus 221 dAL 223 (700)
T PRK12323 221 DAL 223 (700)
T ss_pred HHH
Confidence 443
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=6.8e-06 Score=92.80 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=107.9
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE-EEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 224 (1205)
..|..+..++|+++.++.+..++.....+.+.++|++|+||||+|+.+++...... +.. .+-++.+.......+ ...
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~-~~~ 88 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI-RNK 88 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH-HHH
Confidence 34556677899999999999998876667789999999999999999998864221 211 122222222221111 111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEEecCchh-HH
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VL 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-v~ 301 (1205)
+..+....+ .....+-++|+|+++.... ...+...+.. ....+++|+++.... +.
T Consensus 89 i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-------~~~~~~lIl~~~~~~~l~ 146 (319)
T PRK00440 89 IKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM-------YSQNTRFILSCNYSSKII 146 (319)
T ss_pred HHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc-------CCCCCeEEEEeCCccccc
Confidence 111100000 0012356899999875421 2222221111 133456777664322 11
Q ss_pred hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
.........++++++++++....+.+.+..... .-.++....+++.++|.+-.+
T Consensus 147 ~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 147 DPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 101123457899999999999999888743211 122457788999999987543
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=2.8e-07 Score=74.10 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=33.3
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCc
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 593 (1205)
+|++|++++|.+. .+|.+.|.++++|++|++++|.++.+| ..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666554 555555566666666666666665553 345555555555555554
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7.5e-06 Score=95.67 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=112.1
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.|..+.+++|.+..++.+..++..... ..+.++|++|+||||+|+.+++.....+.+...+|.+.+... +......-.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 455667889999998888888876554 456899999999999999999886532222222232211000 000000000
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCc-h
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD-Q 298 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~-~ 298 (1205)
..+.. ... ...+.+..+.+.+. .+++-++|+|+++... .++.+...+-. ....+.+|++|.. .
T Consensus 88 ~el~~--~~~-~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-------p~~~t~~Il~t~~~~ 157 (504)
T PRK14963 88 LEIDA--ASN-NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-------PPEHVIFILATTEPE 157 (504)
T ss_pred EEecc--ccc-CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-------CCCCEEEEEEcCChh
Confidence 00000 000 11222333333322 1456689999998652 34444333222 2234555555543 3
Q ss_pred hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 299 HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 299 ~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
.+..........+++.++++++....+.+.+...... -.++....|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 3322123445689999999999999999987322111 13467789999999988433
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=5.4e-06 Score=94.02 Aligned_cols=193 Identities=14% Similarity=0.187 Sum_probs=111.5
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..|..+..++|.+..+..+..++...+. ..+.++|+.|+||||+|+.++....-...... ..+.....- ..+
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i 84 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEI 84 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHH
Confidence 3466777889999999999888886664 45789999999999999999987542111000 001111111 111
Q ss_pred HHHhCCCC---CC-CCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 225 ADQLGLEI---VR-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 225 ~~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
......+. +. .....+.+..+.+.+. .++.-++|+|+|+... .++++...+-. ......+|++
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILa 157 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILA 157 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEee
Confidence 11111000 00 0011222333333332 2466689999998763 35554333211 1234454444
Q ss_pred cCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 295 SRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 295 Tr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
|.. ..+...-......|.+.+++.++..+.+.+.+..... .-.+++...|++.++|.+
T Consensus 158 Tte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 158 TTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred cCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChH
Confidence 443 4443212344568999999999999999888743221 123566789999999988
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=94.10 Aligned_cols=180 Identities=15% Similarity=0.200 Sum_probs=112.4
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 206 (1205)
.|..+..++|.+...+.+.+++..++ ...+.++|+.|+||||+|+.+++...-. +.|--+
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 45677889999999999999998655 4577899999999999999998875311 111122
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH----HcCCeEEEEEccccccc--ccccccCCCCCCCc
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL----KKKKRVLVILDDIWTQI--NLDDIGIPFWDGEK 280 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 280 (1205)
+.++.+....+.+ ++.+.... ..+++-++|+|+|+... ..+.+...+-.
T Consensus 90 iEIDAAs~~~Vdd----------------------IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE--- 144 (702)
T PRK14960 90 IEIDAASRTKVED----------------------TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE--- 144 (702)
T ss_pred EEecccccCCHHH----------------------HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc---
Confidence 3333322222222 22222211 12456689999998763 33333322211
Q ss_pred cccCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 281 QSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
...+.++|++|.+.. +...-......+++++++.++....+.+.+..... .-..+....|++.++|.+-.+
T Consensus 145 ----PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 145 ----PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred ----CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 224557777776543 22212345678999999999999999988743222 223456778999999977433
No 76
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=5.4e-06 Score=86.69 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=106.2
Q ss_pred cCCccccCCChHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQ---KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
|....++||.+..+- -+-..+..+.++-+.+||++|+||||||+.+....+... +.||..|....-..-.+.|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHH
Confidence 334445555444332 123334466788889999999999999999998876332 5678877665444444455
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEE--ecCchhH
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQHV 300 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilv--TTr~~~v 300 (1205)
.++-. .. ....++|.+|++|+|..- .+-+.|.. . -..|.-++| ||-++..
T Consensus 210 fe~aq--------------~~--~~l~krkTilFiDEiHRFNksQQD~fLP---~-------VE~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 210 FEQAQ--------------NE--KSLTKRKTILFIDEIHRFNKSQQDTFLP---H-------VENGDITLIGATTENPSF 263 (554)
T ss_pred HHHHH--------------HH--HhhhcceeEEEeHHhhhhhhhhhhcccc---e-------eccCceEEEecccCCCcc
Confidence 44321 11 111258999999999754 22333322 2 234555555 6666643
Q ss_pred H--hhcCCCCceEEccCCChHhHHHHHHHHh---CCC------CCCC---chHHHHHHHHHhcCCCh
Q 000975 301 L--RINMSNPRIFSISTLADGEAKSLFEKIV---GDS------AKES---DCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 301 ~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~---~~~------~~~~---~~~~~~~~i~~~~~glP 353 (1205)
- ..-.....++.+++|+.++...++.+.. ++. .+.+ -...+.+-++..|.|-.
T Consensus 264 qln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 264 QLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred chhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 2 1125567899999999999999998854 221 1111 12446667777777754
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3e-08 Score=100.35 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=118.0
Q ss_pred cccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccc
Q 000975 941 KKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTG 1020 (1205)
Q Consensus 941 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 1020 (1205)
....+.+|+.|.|.++.+.+-...... .-.+|+.|+|+.|+.++.....-++.+++.|.+|+|++|.-.++...
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iA----kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-- 278 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIA----KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-- 278 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHh----ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh--
Confidence 345578888888888866543221111 34689999999999999876555788999999999999986655432
Q ss_pred cccccccccccccccceeccccCCCc-cccCCCcc-cCCCCcceeeeccCcccccccccccccccCCCCCCCCccccccc
Q 000975 1021 LGREENLIEMVFPKLVYLSLSHLPQL-SRFGIGNL-VELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDE 1098 (1205)
Q Consensus 1021 ~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~l-~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~ 1098 (1205)
......-++|+.|+|++|..- ..-....+ ..+|+|..|++++|..++.- .+..
T Consensus 279 -----v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--------------------~~~~ 333 (419)
T KOG2120|consen 279 -----VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--------------------CFQE 333 (419)
T ss_pred -----HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--------------------HHHH
Confidence 223456788999999998542 11111122 36899999999999887651 1234
Q ss_pred ccccCcceeeeecccccchhhccCCCCCCcccCccEEEeccccccc
Q 000975 1099 KVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELL 1144 (1205)
Q Consensus 1099 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~ 1144 (1205)
+..++.|++|.++.|-.+- |.......+.|+|.+|++.+|-.-+
T Consensus 334 ~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred HHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccCch
Confidence 5678999999999985432 2222334557899999999986443
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=3.1e-06 Score=83.36 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 000975 155 PSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR 234 (1205)
Q Consensus 155 ~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 234 (1205)
.||+..++.+...+.....+.+.|+|++|+|||++|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 37888889998888766677899999999999999999999875 222456777766544322221111100
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEcccccc-----cccccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 235 PDSLVEKANQLRQALKKKKRVLVILDDIWTQ-----INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 235 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
............++.++|+||++.. ..+......... ......+..||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND----LRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCc----eeccCCCeEEEEecCccc
Confidence 0000111111247789999999854 112211111110 000136788888888664
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.4e-05 Score=92.82 Aligned_cols=179 Identities=13% Similarity=0.190 Sum_probs=110.9
Q ss_pred cccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC---------------------
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLF--------------------- 203 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f--------------------- 203 (1205)
..|..+.+++|.+..+..+...+..+. .+.+.++|+.|+||||+|+.+++...-....
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 346667788999999988888776554 3578899999999999999999876421110
Q ss_pred --cEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCC
Q 000975 204 --DVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPF 275 (1205)
Q Consensus 204 --~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~ 275 (1205)
.-++.+++.....+ +.++.+.+... .+++-++|+|+++... .++.+...+
T Consensus 95 ~h~Dv~eidaas~~~v----------------------d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~L 152 (507)
T PRK06645 95 NHPDIIEIDAASKTSV----------------------DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL 152 (507)
T ss_pred CCCcEEEeeccCCCCH----------------------HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHH
Confidence 01122222222222 22222222221 1466789999998753 355543333
Q ss_pred CCCCccccCCCCCeEEEE-ecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 276 WDGEKQSVDNQGRWTLLL-ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 276 ~~~~~~~~~~~~~s~ilv-TTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
.. ....+.+|+ ||+...+...-......+++.+++.++....+.+.+...... -.+++...|++.++|.+-
T Consensus 153 Ee-------pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 153 EE-------PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred hh-------cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 22 234556554 444444443223345689999999999999999988432221 224567789999999773
No 80
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=4.4e-07 Score=72.95 Aligned_cols=56 Identities=27% Similarity=0.401 Sum_probs=29.3
Q ss_pred ceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccCC
Q 000975 560 ELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSH 615 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~ 615 (1205)
+|++|++++|.++.+|. .|.++++|++|++++|.++. +..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555543 35555555555555555544 3445555555555555543
No 81
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=1e-05 Score=84.58 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=95.5
Q ss_pred ccccC--CChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHh
Q 000975 151 YVHFP--SRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (1205)
Q Consensus 151 ~~~~~--gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (1205)
...|+ +.+...-.+++.+.....+.+.|+|++|+|||+|++.++..... .|++.. .+.
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~------- 79 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIG------- 79 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------Hcc-------
Confidence 44555 33443333333322333567999999999999999988876431 244322 110
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-cccccCCCCCCCccccCCCCCeEEEEecCchh--------
Q 000975 229 GLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-------- 299 (1205)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-------- 299 (1205)
..+...+.+ -+|++||++.... -+.+...+. .+ ...|..||+|++...
T Consensus 80 --------------~~~~~~~~~---~~l~iDDi~~~~~~~~~lf~l~n-----~~-~~~g~~ilits~~~p~~~~~~~~ 136 (226)
T PRK09087 80 --------------SDAANAAAE---GPVLIEDIDAGGFDETGLFHLIN-----SV-RQAGTSLLMTSRLWPSSWNVKLP 136 (226)
T ss_pred --------------hHHHHhhhc---CeEEEECCCCCCCCHHHHHHHHH-----HH-HhCCCeEEEECCCChHHhccccc
Confidence 011111221 3788899965421 111111110 01 234667888887432
Q ss_pred -HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHH
Q 000975 300 -VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (1205)
Q Consensus 300 -v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 360 (1205)
... .+....+++++++++++-.+++++++... .-.-.+++..-|++++.|..-++..+-
T Consensus 137 dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 137 DLKS-RLKAATVVEIGEPDDALLSQVIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred cHHH-HHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 222 24556789999999999999999998432 112235678889999988887666433
No 82
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=106.87 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=83.6
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-CcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEc
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSF 611 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L 611 (1205)
.++.|+|++|.+.+.+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.++. |..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47788888888887787764 78888888888888887 678788888888888888888875 677888888888888
Q ss_pred ccCCCC-ccchhccCC-CccCEEeccCCCCCCc
Q 000975 612 RNSHIE-QLPEQIGNL-TRLKLLDLSNCSKLKV 642 (1205)
Q Consensus 612 ~~~~l~-~lp~~i~~L-~~L~~L~L~~~~~l~~ 642 (1205)
++|.+. .+|..++.+ .++..+++.+|..+..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccC
Confidence 888877 778777653 4667788777654443
No 83
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.31 E-value=9.4e-06 Score=81.41 Aligned_cols=180 Identities=14% Similarity=0.171 Sum_probs=92.9
Q ss_pred cccCCccccCCChHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (1205)
-.|....+|+|.+..++.+.-.+. .....-+.+||++|+||||||..+++.... .| .+++...-....++
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--~~---~~~sg~~i~k~~dl 92 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--NF---KITSGPAIEKAGDL 92 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--Ce---EeccchhhhhHHHH
Confidence 346678899999988877654443 234567889999999999999999998763 33 23333221112222
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc---------ccccccC--CCCCCCc---cccCCC
Q 000975 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI---------NLDDIGI--PFWDGEK---QSVDNQ 286 (1205)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~~~~--~~~~~~~---~~~~~~ 286 (1205)
. .++.. + +++-+|++|++.... ..++... ....+.. -.++-.
T Consensus 93 ~-~il~~---------------------l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 93 A-AILTN---------------------L--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp H-HHHHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred H-HHHHh---------------------c--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 11111 2 234466667765431 0111100 0000000 000112
Q ss_pred CCeEEEEecCchhHHhhcCCC-C-ceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 287 GRWTLLLASRDQHVLRINMSN-P-RIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 287 ~~s~ilvTTr~~~v~~~~~~~-~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
+-+-|=.|||...+.. .... . -..+++..+.+|-.+...+.+..-. -+-.++.+.+|++++.|-|--+
T Consensus 149 ~FTligATTr~g~ls~-pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSS-PLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp --EEEEEESSGCCTSH-CCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHH
T ss_pred CceEeeeeccccccch-hHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHH
Confidence 3455667888876654 2332 2 3458999999999999998874321 2233678899999999999543
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=93.08 Aligned_cols=188 Identities=12% Similarity=0.170 Sum_probs=111.2
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 206 (1205)
.|..+..++|.+..++.+...+...+. ..+.++|+.|+||||+|+.+++...-. ..|..+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 456677889999999999988876544 457899999999999999999865311 112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccC
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 284 (1205)
++++......+.++ +.+.+. +...-..+++-++|+||++... .++.+...+-.
T Consensus 91 ieidaas~~gvd~i-r~ii~~-----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe------- 145 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDN-----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE------- 145 (546)
T ss_pred EEeecccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------
Confidence 33333222222221 112111 1111112466799999997653 23333322211
Q ss_pred CCCCeEEE-EecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHHHHHH
Q 000975 285 NQGRWTLL-LASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTIA 360 (1205)
Q Consensus 285 ~~~~s~il-vTTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 360 (1205)
....+.+| +||....+...-......+++++++.++....+.+.+..... .-.++....|++.++|.+ -|+..+-
T Consensus 146 pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 146 PPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12344555 454443333211344578999999999998888886633221 223456678999999966 4444443
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=5.6e-05 Score=91.24 Aligned_cols=206 Identities=17% Similarity=0.059 Sum_probs=114.4
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc---EEEEEEecC---CCCHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD---VVVDAEVTH---TPDWKEIC 221 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~---~~~~~~~~ 221 (1205)
+..+..++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+. ..-|+.+.. ..+...+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 445567889999998888877655566799999999999999999998765433321 123444332 11222221
Q ss_pred HH---------------HHHHhCCCCC-----------------CCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cc
Q 000975 222 GR---------------IADQLGLEIV-----------------RPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--IN 267 (1205)
Q Consensus 222 ~~---------------i~~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~ 267 (1205)
.. .+...+.... -..-.......+.+.+. ++++.++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCccc
Confidence 11 1111121100 00012334556666665 47777776655543 34
Q ss_pred cccccCCCCCCCccccCCCCCeEEEE--ecCchhHH-hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHH
Q 000975 268 LDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQHVL-RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVE 344 (1205)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~s~ilv--TTr~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~ 344 (1205)
|+.+...+.. ..+...|++ ||++.... ..-......+.+.+++.+|.+.++++.+..... .-.+++.+.
T Consensus 309 ~~~ik~~~~~-------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~ 380 (615)
T TIGR02903 309 PKYIKKLFEE-------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEEL 380 (615)
T ss_pred chhhhhhccc-------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHH
Confidence 6555444433 334444555 56654321 101123357789999999999999998753211 111344555
Q ss_pred HHHhcCCChHHHHHHHHH
Q 000975 345 IVGKCGGLPIAVSTIANA 362 (1205)
Q Consensus 345 i~~~~~glPLai~~~~~~ 362 (1205)
|.+....-+-|+..++..
T Consensus 381 L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 381 IARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHCCCcHHHHHHHHHHH
Confidence 555554445555555443
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=9.6e-06 Score=94.66 Aligned_cols=199 Identities=12% Similarity=0.160 Sum_probs=108.8
Q ss_pred cccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..|..+.+++|++..++.+.+++..+. .+.+.++|+.|+||||+|+.++....-.. |.... ..+.-...+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESI 82 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHH
Confidence 346667788999999999999887544 45688999999999999999998764211 11110 00000111111
Q ss_pred HHHhCC-----CCCCCCCHHHHHHHHHHHHHc----CCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEE
Q 000975 225 ADQLGL-----EIVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL 293 (1205)
Q Consensus 225 ~~~l~~-----~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv 293 (1205)
...... +.... ...+.++.+.+.... +++-++|+|+++... .+..+...+-. ....+.+|+
T Consensus 83 ~~~~h~DiieIdaas~-igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------Pp~~tvfIL 154 (605)
T PRK05896 83 NTNQSVDIVELDAASN-NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------PPKHVVFIF 154 (605)
T ss_pred HcCCCCceEEeccccc-cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 110000 00000 111112222222211 234469999998752 33333222211 123445554
Q ss_pred ec-CchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHHHHH
Q 000975 294 AS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTIA 360 (1205)
Q Consensus 294 TT-r~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 360 (1205)
+| ....+...-......+++.++++++....+.+.+..... .-..+.+..+++.++|.+- |+..+-
T Consensus 155 ~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 155 ATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred ECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44 433333211334568999999999999999887733211 1124567789999999663 444433
No 87
>PRK08727 hypothetical protein; Validated
Probab=98.27 E-value=1.1e-05 Score=85.39 Aligned_cols=171 Identities=14% Similarity=0.098 Sum_probs=99.2
Q ss_pred ccccCCCh-HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhC
Q 000975 151 YVHFPSRN-PVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (1205)
Q Consensus 151 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (1205)
++.|++.+ ..+..+...........+.|+|.+|+|||.||+.+++....+ ...++|+++.+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH-----
Confidence 44455443 333333333333334569999999999999999999886533 33566776432 11111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc---ccc-ccCCCCCCCccccCCCCCeEEEEecCchhHH----
Q 000975 230 LEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---LDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQHVL---- 301 (1205)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~-~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~---- 301 (1205)
....+.+. +.-+||+||++.... |.. +.. +.+ .. ...+..||+|++...-.
T Consensus 85 -------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~-l~n----~~-~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 85 -------------RDALEALE--GRSLVALDGLESIAGQREDEVALFD-FHN----RA-RAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred -------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHH-HHH----HH-HHcCCeEEEECCCChhhhhhh
Confidence 11222332 445899999976532 221 111 111 11 12456799999864321
Q ss_pred --h--hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 302 --R--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 302 --~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
. ..+.....+++++++.++-.+++++++.... -.-.+++...|++.++|-.-.+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 0 0123356899999999999999999773211 1223466778888888765443
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.8e-05 Score=91.07 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=111.5
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhh-------------------cCCCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVK-------------------EDLFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~~ 206 (1205)
.|..+.+++|.+..++.+.+.+..++.+ .+.++|+.|+||||+|+.++....- ...+.-+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3556778899999998888888766554 7889999999999999999875321 0112223
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCccccC
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ 284 (1205)
+.++.+....+.++ +.+.+...... . .++.-++|+|+++.... .+.+...+-.
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~P----------------~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEe------- 142 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYLP----------------I-SSKFKVYIIDEVHMLSNSAFNALLKTLEE------- 142 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhcc----------------c-cCCceEEEEeChHhCCHHHHHHHHHHHhC-------
Confidence 45555443333332 22222211000 0 13556899999976532 3333222222
Q ss_pred CCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 285 NQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 285 ~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
..+.+++|++|.. ..+...-......+++.+++.++....+.+.+...... -.++....|++.++|.+-
T Consensus 143 Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 143 PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMR 212 (491)
T ss_pred CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 2345566655543 34433124455789999999999999999887443221 224567789999999774
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.26 E-value=5.1e-06 Score=100.87 Aligned_cols=173 Identities=19% Similarity=0.313 Sum_probs=100.6
Q ss_pred ccCCccccCCChHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQ---KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.|..+.+|+|++..+. .+...+..+..+.+.++|++|+||||+|+.+++... .+|. .+++.. ..+.++
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di--- 93 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL--- 93 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH---
Confidence 3556677889888774 455566666677789999999999999999998764 4441 121110 011111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHH-cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEE--ecCch
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQ 298 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv--TTr~~ 298 (1205)
.+......+.+. .+++.+|||||++... .++.+...+ ..+..++| ||.++
T Consensus 94 ---------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----------E~g~IiLI~aTTenp 148 (725)
T PRK13341 94 ---------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----------ENGTITLIGATTENP 148 (725)
T ss_pred ---------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----------cCceEEEEEecCCCh
Confidence 111112222221 1467799999997642 333332211 23444555 34443
Q ss_pred h--HHhhcCCCCceEEccCCChHhHHHHHHHHhCC------CCCCCchHHHHHHHHHhcCCCh
Q 000975 299 H--VLRINMSNPRIFSISTLADGEAKSLFEKIVGD------SAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 299 ~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~~~glP 353 (1205)
. +...-......+++++++.++...++.+.+.. .....-.+++...|++.+.|.-
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 2 11111233568999999999999999987731 1111223556678888887754
No 90
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=1.7e-06 Score=91.00 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=64.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCHH------HHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDSLV------EKAN 243 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 243 (1205)
....++|+|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+...+-....+.+... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999988654 8999999997766 7899999998332211111111111 1122
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 000975 244 QLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 244 ~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.......++++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223479999999999765
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.7e-05 Score=93.98 Aligned_cols=180 Identities=14% Similarity=0.191 Sum_probs=109.3
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC-----------------------
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL----------------------- 202 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----------------------- 202 (1205)
.|..+.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++...-...
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 456677889999999999998876554 56789999999999999999876531110
Q ss_pred -CcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCC
Q 000975 203 -FDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPF 275 (1205)
Q Consensus 203 -f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~ 275 (1205)
+.-+++++...... .+.+..+.+... .++.-++|||+|+... .++.+...+
T Consensus 91 ~h~D~~eldaas~~~----------------------Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtL 148 (618)
T PRK14951 91 RFVDYTELDAASNRG----------------------VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTL 148 (618)
T ss_pred CCCceeecCcccccC----------------------HHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhc
Confidence 11112222221111 122222222221 1345588999998763 334433322
Q ss_pred CCCCccccCCCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 276 WDGEKQSVDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 276 ~~~~~~~~~~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
-. ....+++|++|.+ ..+...-......++++++++++....+.+.+...... -..+....|++.++|.+-
T Consensus 149 EE-------PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR 220 (618)
T PRK14951 149 EE-------PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMR 220 (618)
T ss_pred cc-------CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 21 1234566655544 33332124456789999999999999999887432221 224567889999999774
Q ss_pred HH
Q 000975 355 AV 356 (1205)
Q Consensus 355 ai 356 (1205)
-+
T Consensus 221 ~a 222 (618)
T PRK14951 221 DA 222 (618)
T ss_pred HH
Confidence 33
No 92
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=2.9e-06 Score=87.14 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=34.8
Q ss_pred ccCCChHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000975 153 HFPSRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~ 200 (1205)
.|+||+++++++...+. ....+.+.|+|.+|+|||+++++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999993 4456889999999999999999999998765
No 93
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.22 E-value=3.3e-05 Score=88.05 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=103.9
Q ss_pred ccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
+...+..+.|++++++++.+.+. . ...+-|.++|++|+|||++|+.+++... ..| +.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch
Confidence 34455678899999999888763 1 1244588999999999999999999765 333 22211
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--c-----------ccccCCCCCCCc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--L-----------DDIGIPFWDGEK 280 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~-----------~~~~~~~~~~~~ 280 (1205)
.++.... ++ ........+.+......+.+|++||++.... . ..+...+ .. .
T Consensus 190 ----~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll-~~-l 253 (364)
T TIGR01242 190 ----SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLL-AE-L 253 (364)
T ss_pred ----HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHH-HH-h
Confidence 1111110 11 1122233343333335678999999976411 0 0000000 00 0
Q ss_pred cccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 281 QSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+.+....+.+||.||........+. .-...++++..+.++..++|+.++......++. -...+++.+.|..
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 0011234678888888654321111 224678999999999999999887432222211 1356777777764
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=1.6e-05 Score=84.14 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHH
Q 000975 160 VFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLV 239 (1205)
Q Consensus 160 ~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 239 (1205)
.+..+.++......+.+.|+|+.|+|||+||+.+++....+ -..+.++++..... .
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------~-- 87 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------F-- 87 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh--------------------h--
Confidence 44444444444455688999999999999999999876532 34566776643110 0
Q ss_pred HHHHHHHHHHHcCCeEEEEEcccccc---cccccc-cCCCCCCCccccCCCCCeEEEEecCchhHH---------hhcCC
Q 000975 240 EKANQLRQALKKKKRVLVILDDIWTQ---INLDDI-GIPFWDGEKQSVDNQGRWTLLLASRDQHVL---------RINMS 306 (1205)
Q Consensus 240 ~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~~-~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~---------~~~~~ 306 (1205)
...+.+.+. +--++++||++.. ..|+.. ...+.. .. ...+.++|+||+..... . .+.
T Consensus 88 --~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~----~~-e~g~~~li~ts~~~p~~l~~~~~~L~S-Rl~ 157 (235)
T PRK08084 88 --VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNR----IL-ESGRTRLLITGDRPPRQLNLGLPDLAS-RLD 157 (235)
T ss_pred --hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHH----HH-HcCCCeEEEeCCCChHHcCcccHHHHH-HHh
Confidence 011222222 1237899999764 233321 111110 00 12234799999865322 2 234
Q ss_pred CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 307 NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 307 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
...+++++++++++-.+.+++++... .-.-.+++..-|++++.|..-++..+
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 45689999999999999998876321 12233567788888888766544433
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=3.5e-05 Score=88.41 Aligned_cols=186 Identities=12% Similarity=0.190 Sum_probs=110.3
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCcE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE--------------------DLFDV 205 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~ 205 (1205)
.|..+..++|.+..++.+.+++..... +.+.++|++|+||||+|+.++....-. .+++.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 455667789999999999998876554 467899999999999999999875311 12332
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCcccc
Q 000975 206 VVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSV 283 (1205)
Q Consensus 206 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~ 283 (1205)
++++........+ .+.+...+.... . .+++-++|+|+++.. ...+.+...+..
T Consensus 89 -~~~~~~~~~~~~~-~~~l~~~~~~~p----------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~------ 143 (355)
T TIGR02397 89 -IEIDAASNNGVDD-IREILDNVKYAP----------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEE------ 143 (355)
T ss_pred -EEeeccccCCHHH-HHHHHHHHhcCc----------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhC------
Confidence 3333221111111 122222211100 0 135558899998765 223333222211
Q ss_pred CCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 284 DNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 284 ~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
....+.+|++|.+.. +...-......+++.++++++....+.+.+..... .-.++.+..+++.++|.|..+...
T Consensus 144 -~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 144 -PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred -CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 234556666665544 22211233467899999999999999887732211 112467788999999988655443
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.4e-05 Score=92.95 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=110.2
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.|..+.+++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++...-...+. . .....-...+.|.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~------~-~pCg~C~~C~~i~ 83 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT------A-TPCGECDNCREIE 83 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC------C-CCCCCCHHHHHHH
Confidence 456677899999999999888876554 4468999999999999999988764211000 0 0000001111111
Q ss_pred HHhC-----CCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 226 DQLG-----LEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 226 ~~l~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
..-. .+.... ...+.++.+.+.+. .+++-++|||+++... ..+.+...+-. .....++|++
T Consensus 84 ~g~~~D~ieidaas~-~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------Pp~~v~FIL~ 155 (647)
T PRK07994 84 QGRFVDLIEIDAASR-TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLA 155 (647)
T ss_pred cCCCCCceeeccccc-CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------CCCCeEEEEe
Confidence 1000 000000 11122223333222 2466789999998763 23333222211 1234555555
Q ss_pred cCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHH
Q 000975 295 SRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 295 Tr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
|.+. .+...-......|++++++.++....+.+.+..... ...++....|++.++|.+-.+.
T Consensus 156 Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred cCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 5444 333211344678999999999999999987732211 1224566789999999885333
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=4.4e-06 Score=91.10 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=66.0
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCHHH
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP--DWKEICGRIADQLGLEIVRPDSLVE 240 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 240 (1205)
+++.+.. ..-....|+|++|+||||||+++|+....+ +|+.++||.+.+.. ++.++++.+...+-....+. ....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~-~~~~ 236 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PAER 236 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC-CHHH
Confidence 3444431 233467899999999999999999998764 89999999998876 77788887763221111111 1111
Q ss_pred H------HHHHHHHH-HcCCeEEEEEcccccc
Q 000975 241 K------ANQLRQAL-KKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 ~------~~~l~~~l-~~~k~~LlVlDdv~~~ 265 (1205)
. +-...+++ .++++++|++|++...
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1 11122222 3579999999998764
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3e-05 Score=87.64 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=102.6
Q ss_pred ccccCCChHHHHHHHHHhccCC----------ccEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------C
Q 000975 151 YVHFPSRNPVFQKMMESLRDSN----------VNMIGLYGMGGVGKTTLVKVVARQVVKE-------------------D 201 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~ 201 (1205)
+..++|.+..++.+..++.... .+.+.++|+.|+|||++|+.++...--. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4567899999998888887542 4568899999999999999998764311 1
Q ss_pred CCcEEEEEEec-CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCC
Q 000975 202 LFDVVVDAEVT-HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIP 274 (1205)
Q Consensus 202 ~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~ 274 (1205)
|.|. .++... ....+ +.+..+.+... .+++-++|+|+++... ..+.+...
T Consensus 84 hpD~-~~i~~~~~~i~i----------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 84 HPDV-RVVAPEGLSIGV----------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCCE-EEeccccccCCH----------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 2221 122111 11111 12223333222 1355588889998763 22223222
Q ss_pred CCCCCccccCCCCCeEEEEecCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 275 FWDGEKQSVDNQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 275 ~~~~~~~~~~~~~~s~ilvTTr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+-. ...++.+|++|.+. .+...-......+.+.+++.++..+.+.+..+. ..+.+..+++.++|.|
T Consensus 141 LEe-------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEE-------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHI 207 (394)
T ss_pred hhc-------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCH
Confidence 211 12345555555554 333222344578999999999999888765432 1345678999999999
Q ss_pred HHHH
Q 000975 354 IAVS 357 (1205)
Q Consensus 354 Lai~ 357 (1205)
....
T Consensus 208 ~~A~ 211 (394)
T PRK07940 208 GRAR 211 (394)
T ss_pred HHHH
Confidence 6543
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=0.00011 Score=86.44 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=112.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc-------------------EE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-------------------VV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~-------------------~~ 206 (1205)
.|..+.+++|.+..++.|...+..++ ...+.++|+.|+||||+|+.+++...-....+ -+
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 45566778899988888888887654 46788999999999999999998764211100 02
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCc
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEK 280 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 280 (1205)
++++......+ +.++.+.+.+. .+++-++|+|+++... .++.+...+-.
T Consensus 91 ~eId~a~~~~I----------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE--- 145 (624)
T PRK14959 91 VEIDGASNRGI----------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE--- 145 (624)
T ss_pred EEEecccccCH----------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc---
Confidence 23322111111 11222222221 2466789999998762 23333322211
Q ss_pred cccCCCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHHHH
Q 000975 281 QSVDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVST 358 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~ 358 (1205)
......+|++|.+ ..+...-......++++++++++....+.+.+..... .-.++.+..|++..+|.+ .|+..
T Consensus 146 ----P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~l 220 (624)
T PRK14959 146 ----PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSL 220 (624)
T ss_pred ----cCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1234556665554 3333211334568899999999999999887633211 123456788999999955 67766
Q ss_pred HHHHh
Q 000975 359 IANAL 363 (1205)
Q Consensus 359 ~~~~l 363 (1205)
+...+
T Consensus 221 Leqll 225 (624)
T PRK14959 221 LGQVL 225 (624)
T ss_pred HHHHH
Confidence 65544
No 100
>PF14516 AAA_35: AAA-like domain
Probab=98.17 E-value=0.00023 Score=79.48 Aligned_cols=210 Identities=14% Similarity=0.164 Sum_probs=123.7
Q ss_pred CCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-----CCHHHHHH-
Q 000975 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-----PDWKEICG- 222 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~- 222 (1205)
.+..-++.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+..+.+ .+ .++++++... .+..+.++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 34456778987777888887653 4578999999999999999999988753 33 4567777642 23454444
Q ss_pred ---HHHHHhCCCCCC-------CCCHHHHHHHHHHHHH-c-CCeEEEEEccccccccc----ccccCCCCC--CCccccC
Q 000975 223 ---RIADQLGLEIVR-------PDSLVEKANQLRQALK-K-KKRVLVILDDIWTQINL----DDIGIPFWD--GEKQSVD 284 (1205)
Q Consensus 223 ---~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~-~-~k~~LlVlDdv~~~~~~----~~~~~~~~~--~~~~~~~ 284 (1205)
.|.++++.+..- ..........+.+.+. + +++.+|++|+|+..... +++...+.. .....-+
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 445555554311 0112222333444432 2 58999999999875321 112111100 0000000
Q ss_pred CCCCe-EEEEecCchhHH-h---hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 285 NQGRW-TLLLASRDQHVL-R---INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 285 ~~~~s-~ilvTTr~~~v~-~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
.-..- =|++.+...... . ........++|++|+.+|...|+.++-.. -.....++|...++|+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHH
Confidence 00111 122222111111 1 01223458899999999999998876422 11223789999999999999999
Q ss_pred HHHhcCC
Q 000975 360 ANALKGQ 366 (1205)
Q Consensus 360 ~~~l~~~ 366 (1205)
+..+..+
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999765
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=2.3e-05 Score=87.33 Aligned_cols=201 Identities=13% Similarity=0.117 Sum_probs=115.5
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC--CcEEEEEEecCCCCHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL--FDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.|.....++|.++....+...+..+.. ..+.|+|+.|+||||+|..++...-.... +... ........-...+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 456677889999999999998876553 46889999999999999999988642110 1110 00001111112333
Q ss_pred HHHH-------hCCC--CC----CCCCHHHHHHHHHHHHHc----CCeEEEEEcccccccc--cccccCCCCCCCccccC
Q 000975 224 IADQ-------LGLE--IV----RPDSLVEKANQLRQALKK----KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 224 i~~~-------l~~~--~~----~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ 284 (1205)
+... +..+ .. ...-..+.+..+.+.+.. +++-++|+|+++.... .+.+...+-. |
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------p 168 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------P 168 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------C
Confidence 3222 1000 00 000113344555555542 4667899999987632 2333222211 1
Q ss_pred CCCCeEEEEecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 285 NQGRWTLLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
.....-|++|++...+...-......+++.+++.++..+++.+.... .. -.++....|++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12233355554443333212334569999999999999999885321 11 22455778999999999755433
No 102
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.9e-05 Score=91.60 Aligned_cols=179 Identities=13% Similarity=0.200 Sum_probs=108.3
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 206 (1205)
.|..+.+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.++....-.. .|.-+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 456677899999999999999886554 4688999999999999999988643111 11111
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH----HcCCeEEEEEcccccccc--cccccCCCCCCCc
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL----KKKKRVLVILDDIWTQIN--LDDIGIPFWDGEK 280 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~ 280 (1205)
+.++......+ +.++.+.+.. ..+++-++|||+++.... .+.+...+-.
T Consensus 91 lEidaAs~~gV----------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE--- 145 (709)
T PRK08691 91 LEIDAASNTGI----------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE--- 145 (709)
T ss_pred EEEeccccCCH----------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh---
Confidence 23332222222 1122222211 114566899999976532 2222222211
Q ss_pred cccCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 281 QSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
....+++|++|.+.. +...-.+....+++.+++.++....+.+.+..... .-..+....|++.++|.+--
T Consensus 146 ----Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 146 ----PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred ----CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHH
Confidence 124456666665443 22111233457888999999999999988743221 12345678999999998843
No 103
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6.6e-05 Score=84.24 Aligned_cols=200 Identities=15% Similarity=0.057 Sum_probs=112.9
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEE----EEEecCCCCHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVV----DAEVTHTPDWKEIC 221 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~~~~~~~~~~~~ 221 (1205)
.|.....++|.+...+.+.+.+..+.. ..+.++|+.|+||+|+|..+++..--+....... -.+... ...-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c 92 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVA 92 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHH
Confidence 455667889999999999998886554 4688999999999999999998764211100000 000000 0000111
Q ss_pred HHHHHHh-------CCC--CCC----CCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccc
Q 000975 222 GRIADQL-------GLE--IVR----PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (1205)
Q Consensus 222 ~~i~~~l-------~~~--~~~----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 282 (1205)
+.|...- ... ..+ ..-..+.+..+.+.+. .+++-++|+||++... ....+...+-.
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe----- 167 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE----- 167 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-----
Confidence 1111100 000 000 0011233444444443 2466789999998763 23333222211
Q ss_pred cCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 283 VDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
...++.+|++|.+.. +...-......+.+.+++.++..+.+.+..+.. .++....+++.++|.|..+..+
T Consensus 168 --pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 --PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 124556666666653 332224456789999999999999998875321 1122367899999999865443
No 104
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=4.8e-05 Score=77.93 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=91.6
Q ss_pred HHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCcEEEEEEec-CCCCHHHH
Q 000975 163 KMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE--------------------DLFDVVVDAEVT-HTPDWKEI 220 (1205)
Q Consensus 163 ~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~-~~~~~~~~ 220 (1205)
.+.+.+..++. ..+.++|+.|+||||+|+.+.....-. .+.|. .++... .....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 34455544444 578899999999999999998886422 12222 222211 11121111
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCch
Q 000975 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (1205)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~ 298 (1205)
+++.+.+.... ..+.+-++|+||++... .++.+...+-. ....+.+|++|++.
T Consensus 82 -~~i~~~~~~~~-----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~ 136 (188)
T TIGR00678 82 -RELVEFLSRTP-----------------QESGRRVVIIEDAERMNEAAANALLKTLEE-------PPPNTLFILITPSP 136 (188)
T ss_pred -HHHHHHHccCc-----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECCh
Confidence 12222211100 01466789999987753 23333332222 23455666666554
Q ss_pred -hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 299 -HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 299 -~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
.+...-......+++.+++.++..+.+.+. |. .++.+..|++.++|.|.
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-gi------~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-GI------SEEAAELLLALAGGSPG 186 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-CC------CHHHHHHHHHHcCCCcc
Confidence 222211234568999999999999888887 31 14668899999999885
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.3e-05 Score=90.68 Aligned_cols=184 Identities=14% Similarity=0.202 Sum_probs=111.1
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCcE
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDV 205 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 205 (1205)
..|..+.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++....-.. .|.-
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3466677899999999999999976554 4578999999999999999998753211 1222
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCcccc
Q 000975 206 VVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSV 283 (1205)
Q Consensus 206 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~ 283 (1205)
++.++.+....+.++ +.+++.+.... ..++.-++|+|+|+... ..+++...+-.
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~~~p-----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEe------ 145 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIPYAP-----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEE------ 145 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhc------
Confidence 344443333333332 22322221110 12455688999998753 33333222221
Q ss_pred CCCCCeEEEEecCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 284 DNQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 284 ~~~~~s~ilvTTr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
....+++|++|.+. .+...-......+++++++.++....+.+.+...... -..+....|++.++|.+--
T Consensus 146 -pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 146 -PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRD 216 (509)
T ss_pred -cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHH
Confidence 12456666655443 3322113334678999999999888877776332221 1244567899999998743
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=4.5e-05 Score=90.80 Aligned_cols=198 Identities=13% Similarity=0.144 Sum_probs=111.8
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc--EEEEEEecCCCCHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFD--VVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 223 (1205)
.|..+.+++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+++...-..... ...+-.+. .-.-.+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~ 94 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQA 94 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHH
Confidence 456777899999999999999886654 4688999999999999999998754211110 00000000 0011111
Q ss_pred HHHHhCCC-----CCCCCCHHHHHHHHHHHHHc----CCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEE
Q 000975 224 IADQLGLE-----IVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLL 292 (1205)
Q Consensus 224 i~~~l~~~-----~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il 292 (1205)
|...-..+ .... ...+.+..+.+.... +++-++|+|+++... ..+.+...+-. -...+++|
T Consensus 95 i~~g~h~Dv~e~~a~s~-~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------Pp~~~~fI 166 (598)
T PRK09111 95 IMEGRHVDVLEMDAASH-TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHVKFI 166 (598)
T ss_pred HhcCCCCceEEeccccc-CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------CCCCeEEE
Confidence 11111000 0000 112223333333321 355678999997763 23333222211 13456665
Q ss_pred Eec-CchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHH
Q 000975 293 LAS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 293 vTT-r~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
++| ....+...-......+++..+++++....+.+.+...... -..+....|++.++|.+.-+.
T Consensus 167 l~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 167 FATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred EEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 555 3333332113345689999999999999999887432211 224567889999999885443
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.9e-05 Score=89.28 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=110.9
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE-ecCCCCHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE-VTHTPDWKEICGRI 224 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 224 (1205)
.|..+..++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++...-...++..-|.. .......=...+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 455667889999999988888876555 4588999999999999999998764221111111110 00000000111111
Q ss_pred HHHhCCCC---CC-CCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 225 ADQLGLEI---VR-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 225 ~~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
...-..+. .+ .....+.+..+.+.+. .+++-++|+|+++... .++.+...+-. ..+.+.+|++
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-------p~~~t~~Il~ 163 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-------PPPHAIFIFA 163 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------CCCCeEEEEE
Confidence 11000000 00 0011223333444442 1356688999998653 34444333322 2345566555
Q ss_pred c-CchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 295 S-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 295 T-r~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
| +...+...-......++++++++++....+.+.+.... ..-.++.+..|++.++|.+--+
T Consensus 164 t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred eCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 5 43333321122245789999999999988888773221 1123567789999999977433
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.09 E-value=5.1e-05 Score=86.71 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=102.2
Q ss_pred cCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 148 VRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
...+..+.|++++++++.+.+. . ...+-|.++|++|+|||++|+.+++... .. |+.++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~- 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG- 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh-
Confidence 3445678899999999888663 1 2345688999999999999999998764 22 222221
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cc-cccCCCCCCCcc
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LD-DIGIPFWDGEKQ 281 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~-~~~~~~~~~~~~ 281 (1205)
.++. .... + ........+.+......+.+|+|||++.... +. .+.. +...+ +
T Consensus 199 ---~~l~----~~~~----g--~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~-lL~~l-d 263 (389)
T PRK03992 199 ---SELV----QKFI----G--EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQ-LLAEM-D 263 (389)
T ss_pred ---HHHh----Hhhc----c--chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHH-HHHhc-c
Confidence 1111 1110 0 1122333444444445678999999986410 00 0100 00000 0
Q ss_pred ccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 282 SVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+....+..||.||........++ .-...++++..+.++..++|+.++.......+. -...+++.+.|.-
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 011234567888887654332111 124579999999999999999887432222211 1345666666643
No 109
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=6.6e-05 Score=89.72 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=109.6
Q ss_pred cccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCC-----------------CcEEE
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDL-----------------FDVVV 207 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~-----------------f~~~~ 207 (1205)
..|..+.+++|.+..++.+..++..++ .+.+.++|+.|+||||+|+.++...--... ++ ++
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vi 90 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-II 90 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EE
Confidence 346677788999999999999987655 456689999999999999999876531110 00 11
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc----CCeEEEEEccccccc--ccccccCCCCCCCcc
Q 000975 208 DAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQ 281 (1205)
Q Consensus 208 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 281 (1205)
++..... ...+.++.+.+.... +++-++|+|+++... .+.++...+-.
T Consensus 91 eidaasn----------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE---- 144 (725)
T PRK07133 91 EMDAASN----------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE---- 144 (725)
T ss_pred EEecccc----------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc----
Confidence 1111111 112223334333331 466688999997652 33333222211
Q ss_pred ccCCCCCeE-EEEecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHHHH
Q 000975 282 SVDNQGRWT-LLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTI 359 (1205)
Q Consensus 282 ~~~~~~~s~-ilvTTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 359 (1205)
....+. |++||+...+...-......+++.+++.++....+...+..... ....+++..|++.++|.+- |+..+
T Consensus 145 ---PP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 145 ---PPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred ---CCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122344 44555444443212344568999999999999988886632211 1224567789999999764 44433
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.0001 Score=84.53 Aligned_cols=183 Identities=14% Similarity=0.235 Sum_probs=105.4
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc------CCCcE-EEEEEecCCCCH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE------DLFDV-VVDAEVTHTPDW 217 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~ 217 (1205)
..|..+.+++|.+..++.+.+.+..... +.+.++|++|+||||+|+.+++..... ..|.. ++.++......+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 3456677889999999999999876554 478899999999999999998875421 11211 111211111111
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEec
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
.++ +.+.+.+.... . .+++-++|+|+++... .++.+...+.. ....+.+|++|
T Consensus 91 ~~i-~~l~~~~~~~p----------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~-------~~~~~~~Il~~ 145 (367)
T PRK14970 91 DDI-RNLIDQVRIPP----------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEE-------PPAHAIFILAT 145 (367)
T ss_pred HHH-HHHHHHHhhcc----------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhC-------CCCceEEEEEe
Confidence 221 12222211000 0 1355689999987653 23333222211 12344555555
Q ss_pred C-chhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 296 R-DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 296 r-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
. ...+...-......++++++++++....+.+.+..... .-.+++...|++.++|.+-
T Consensus 146 ~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 146 TEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALR 204 (367)
T ss_pred CCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHH
Confidence 3 32222211334458999999999999988887632211 1124677888899998664
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=4.8e-05 Score=89.99 Aligned_cols=183 Identities=14% Similarity=0.202 Sum_probs=109.1
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 206 (1205)
.|..+.+++|.+..++.+..++...+. ..+.++|+.|+||||+|+.++....-.. .|.-+
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 345667889999999999998886554 4568999999999999999988763111 11122
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEcccccccc--cccccCCCCCCCc
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQIN--LDDIGIPFWDGEK 280 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~ 280 (1205)
++++.+....+.+ +..+.+... .+++-++|+|+++.... .+.+...+-.
T Consensus 91 ~ei~~~~~~~vd~----------------------ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe--- 145 (527)
T PRK14969 91 IEVDAASNTQVDA----------------------MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE--- 145 (527)
T ss_pred eEeeccccCCHHH----------------------HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC---
Confidence 3333222222222 222222221 14667899999986532 3333222211
Q ss_pred cccCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHHH
Q 000975 281 QSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVST 358 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~ 358 (1205)
....+.+|++|.+.. +...-......+++++++.++....+.+.+..... ...++....|++.++|.+- |+..
T Consensus 146 ----pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~al~l 220 (527)
T PRK14969 146 ----PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDALSL 220 (527)
T ss_pred ----CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 124456666554433 22111223468899999999999888887733221 1234566789999999774 4444
Q ss_pred H
Q 000975 359 I 359 (1205)
Q Consensus 359 ~ 359 (1205)
+
T Consensus 221 l 221 (527)
T PRK14969 221 L 221 (527)
T ss_pred H
Confidence 3
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=4.8e-05 Score=80.73 Aligned_cols=175 Identities=12% Similarity=0.117 Sum_probs=97.6
Q ss_pred ccccC-CChHHH-HHHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHH
Q 000975 151 YVHFP-SRNPVF-QKMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (1205)
Q Consensus 151 ~~~~~-gr~~~~-~~l~~~l~-~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (1205)
+..|+ |+++.. ..+.++.. ....+.+.|+|..|+|||+||+.+++..... . ..+++++...... .
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPLL------A---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhHH------H----
Confidence 33444 444333 33434433 2344678899999999999999999976422 2 2345555433210 0
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc--cccCCCCCCCccccCCCCCeEEEEecCchhHHhh--
Q 000975 228 LGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD--DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI-- 303 (1205)
Q Consensus 228 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~-- 303 (1205)
+ ... ...-+||+||++....+. .+...+.. ........||+|++.......
T Consensus 85 ~------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~-----~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 85 F------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNR-----VRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred H------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHH-----HHHcCCcEEEEeCCCCHHhCCCC
Confidence 0 011 233478999997653322 12111110 001222346777765432210
Q ss_pred -----cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHh
Q 000975 304 -----NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (1205)
Q Consensus 304 -----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 363 (1205)
.+.....++++++++++-..++.+.+.... ..-.+++...+++...|.+..+..+...+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122246899999999987777777552211 12234677888889999998776665544
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=87.04 Aligned_cols=200 Identities=19% Similarity=0.192 Sum_probs=108.4
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE-ecCCCCHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE-VTHTPDWKEICGRI 224 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 224 (1205)
.|..+.+++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++...-...++.-.|.. +......-...+.+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 455677889999999999888876554 4588999999999999999998764211111001110 00000000111111
Q ss_pred HHHhCCCC---CC-CCCHHHHHHHHHHHHH----cCCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEE-
Q 000975 225 ADQLGLEI---VR-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLL- 293 (1205)
Q Consensus 225 ~~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilv- 293 (1205)
...-..+. ++ .....+.+..+.+.+. .+++-++|+||++.... .+.+...+-. -...+.+|+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-------Pp~~tv~IL~ 163 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-------PPPHAIFIFA 163 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-------CCCCeEEEEE
Confidence 11000000 00 0011223333333332 13556789999877532 3333222211 123345444
Q ss_pred ecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 294 ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 294 TTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
|++...+...-......+++.+++.++....+.+.+..... .-..+.+..|++.++|..-
T Consensus 164 t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 164 TTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMR 223 (620)
T ss_pred eCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHH
Confidence 44444443212445678999999999998888876632111 1224567889999999553
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=6.9e-05 Score=93.30 Aligned_cols=168 Identities=13% Similarity=0.146 Sum_probs=96.1
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEEEEecCCCCHHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
+....+++||+.+++++++.|......-+.++|++|+|||++|+.+++......- .+..+|.- +...+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l--- 249 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL--- 249 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH---
Confidence 4456689999999999999887655556779999999999999999998743211 13334421 11111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccc-cCC--CCCCCccccCCCCCeEEEEecCchhH
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDI-GIP--FWDGEKQSVDNQGRWTLLLASRDQHV 300 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~~~--~~~~~~~~~~~~~~s~ilvTTr~~~v 300 (1205)
... .... . ..++....+.+.+.+.++.+|++|++.....-..- ... ..+-++..+ ....-++|-+|...+.
T Consensus 250 -~a~--~~~~-g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 250 -LAG--TKYR-G-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-SSGKLRCIGSTTYEEY 323 (731)
T ss_pred -hhh--cccc-c-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-hCCCeEEEEecCHHHH
Confidence 100 0000 0 23444555555555456899999999854210000 000 000011111 1223455555554221
Q ss_pred H------hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 301 L------RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 301 ~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
. ..-......++++.++.++..+++++..
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1012234579999999999999999765
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=1.7e-05 Score=87.33 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=64.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCC--HHHH----HH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDS--LVEK----AN 243 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~--~~~~----~~ 243 (1205)
....++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.+...+-...-+.+. .... .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999999865 48999999999865 78999999985433222211111 1111 12
Q ss_pred HHHHHHHcCCeEEEEEcccccc
Q 000975 244 QLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 244 ~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.......++++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222234579999999998764
No 116
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=9.9e-05 Score=92.38 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=106.0
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEE-EEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVD-AEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~ 222 (1205)
+....+++||+.++.++++.|......-+.++|++|+||||+|+.++.......- .+..+| ++++.-..
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------ 256 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------ 256 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------
Confidence 4556789999999999999988665566779999999999999999998643211 122233 33221000
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHH-cCCeEEEEEcccccccc------cccccCCCCCCCccccCCCCCeEEEEec
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQIN------LDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
+.... . ..+.....+.+... .+++.+|++|++..... -.+... -++..+ ....-++|-||
T Consensus 257 ------g~~~~-g-e~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n----~Lkp~l-~~G~l~~IgaT 323 (852)
T TIGR03345 257 ------GASVK-G-EFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN----LLKPAL-ARGELRTIAAT 323 (852)
T ss_pred ------ccccc-h-HHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH----HhhHHh-hCCCeEEEEec
Confidence 00000 0 12233344444443 24789999999877521 011000 011112 23445666666
Q ss_pred CchhHH------hhcCCCCceEEccCCChHhHHHHHHHHhC---CCCCCCchHHHHHHHHHhcCCC
Q 000975 296 RDQHVL------RINMSNPRIFSISTLADGEAKSLFEKIVG---DSAKESDCRAIGVEIVGKCGGL 352 (1205)
Q Consensus 296 r~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~gl 352 (1205)
...+.. ..-......+.+++++.+++.++++.... ....-.-..++...+++.+.+.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 654321 00123446899999999999999765442 1111122345566677766543
No 117
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.99 E-value=3.3e-05 Score=79.84 Aligned_cols=187 Identities=19% Similarity=0.193 Sum_probs=117.0
Q ss_pred cccccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE-EEEEEecCCCCHHHHHH
Q 000975 144 ERFSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 144 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~ 222 (1205)
+...|..+..++|.+..++-+.+.+.....+....+|++|+|||+-|+.++...--.+.|.+ +.-.++|..-.+.-+-.
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~ 107 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE 107 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh
Confidence 34456777888999999999999888777889999999999999999999987654345543 34445554433221111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHH-----cCCe-EEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALK-----KKKR-VLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~k~-~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
.+- ....+..... .-++ -.+|||+++.. +.|.++....-. ....++.++.
T Consensus 108 Kik---------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLI 165 (346)
T KOG0989|consen 108 KIK---------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILI 165 (346)
T ss_pred hhc---------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEE
Confidence 110 0011110000 0133 46789999886 567776544333 3455665555
Q ss_pred cCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 295 SRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 295 Tr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+.... +...-.....-|..++|.+++...=++..+..+...- ..++.+.|++.++|--
T Consensus 166 cnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 166 CNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDL 224 (346)
T ss_pred cCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcH
Confidence 54433 2221123345788999999999999999884433222 2456789999999843
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.0007 Score=74.37 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=125.3
Q ss_pred CccccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 150 GYVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.....+||+.+++.+-+++. ....+-+.|.|-+|+|||.+...++.+......--+++++++..-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34467899999999888876 34567899999999999999999999876432223568888776667778888888
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCC-eEEEEEcccccccc--ccccc-CCCCCCCccccCCCCCeEEEEecCchh--
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKK-RVLVILDDIWTQIN--LDDIG-IPFWDGEKQSVDNQGRWTLLLASRDQH-- 299 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~~~-~~~~~~~~~~~~~~~~s~ilvTTr~~~-- 299 (1205)
..+-..........+....+.++..+.+ -+++|+|+.+.... -..+- ...|. .-+++++|+.---..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-------~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-------KLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-------cCCcceeeeeeehhhhh
Confidence 7772222222133555666777776654 78999999887521 11110 01122 445666655432211
Q ss_pred -----HHhhc---CCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 300 -----VLRIN---MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 300 -----v~~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
..... .-....+..++.+.++-.+.|..++......+....+.+.+++++.|.-
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 11110 1234578889999999999999998544333333345555666665544
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00054 Score=82.81 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=111.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.|..+..++|.+..++.+..++..... ..+.++|+.|+||||+|+.++.......... -....+.-...+.|.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 455667889999999999888875543 4568999999999999999998764111000 000111112222232
Q ss_pred HHhCCCC---CC-CCCHHHHHHHHHHHHHc----CCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEec
Q 000975 226 DQLGLEI---VR-PDSLVEKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 226 ~~l~~~~---~~-~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
.....+. .. .....+.+..+.+.+.. +++-++|+|+++... ..+.+...+-. ....+.+|++|
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-------pp~~tv~Il~t 157 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHAIFILAT 157 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-------CCCCeEEEEEe
Confidence 2211110 00 00112223333333321 356789999997652 23333222211 12455666655
Q ss_pred Cch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 296 RDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 296 r~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
.+. .+...-......++++.++.++....+.+.+...... -..+.+..|++.++|.+..+..
T Consensus 158 ~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 158 TEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 443 3322113344678899999999999888887432211 2245678999999998854443
No 120
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0002 Score=84.90 Aligned_cols=187 Identities=15% Similarity=0.186 Sum_probs=110.9
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCC---------------------c
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLF---------------------D 204 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~ 204 (1205)
.|..+.+++|.+..++.|..++..++.. .+.++|+.|+||||+|+.++....-.... .
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 4566778899999999999998866544 57899999999999999999875411100 0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCC
Q 000975 205 VVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDG 278 (1205)
Q Consensus 205 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~ 278 (1205)
-++.++.+....+ +.++.+.+... .+++-++|+|++.... ..+.+...+-.
T Consensus 88 dvieidaas~~gv----------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE- 144 (584)
T PRK14952 88 DVVELDAASHGGV----------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE- 144 (584)
T ss_pred eEEEeccccccCH----------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-
Confidence 1222222221112 22222222221 1355688999987652 23333222211
Q ss_pred CccccCCCCCeEEE-EecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHH
Q 000975 279 EKQSVDNQGRWTLL-LASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAV 356 (1205)
Q Consensus 279 ~~~~~~~~~~s~il-vTTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai 356 (1205)
-...+.+| +||....+...-......+++.+++.++..+.+.+.+...... -..+....|++..+|.+ -|+
T Consensus 145 ------pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~al 217 (584)
T PRK14952 145 ------PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTL 217 (584)
T ss_pred ------CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 12344544 4544444442113446789999999999998888877332211 12456678899999977 344
Q ss_pred HHHHHHh
Q 000975 357 STIANAL 363 (1205)
Q Consensus 357 ~~~~~~l 363 (1205)
..+-.++
T Consensus 218 n~Ldql~ 224 (584)
T PRK14952 218 SVLDQLL 224 (584)
T ss_pred HHHHHHH
Confidence 4444433
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00017 Score=86.67 Aligned_cols=181 Identities=12% Similarity=0.184 Sum_probs=109.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhh---------------------cCCCc
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVK---------------------EDLFD 204 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~ 204 (1205)
.|..+..++|.+...+.+..++..+.. ..+.++|+.|+||||+|+.++....- ..+|+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 345667889999999999999986654 45789999999999999998886531 12343
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccc
Q 000975 205 VVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (1205)
Q Consensus 205 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 282 (1205)
. ..++.+....+.++. .+++++.... ..+++-++|+|+++... .++.+...+-.
T Consensus 92 ~-~~ld~~~~~~vd~Ir-~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEe----- 147 (614)
T PRK14971 92 I-HELDAASNNSVDDIR-NLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE----- 147 (614)
T ss_pred e-EEecccccCCHHHHH-HHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhC-----
Confidence 2 233333222222222 2222221110 01345578999988763 24444332222
Q ss_pred cCCCCCeEEEE-ecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 283 VDNQGRWTLLL-ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 283 ~~~~~~s~ilv-TTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
-...+.+|+ ||+...+...-......+++.++++++....+.+.+..... .-..+.+..|++.++|-.-
T Consensus 148 --pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 148 --PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred --CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 123455555 44444443312445678999999999999999887743221 1224567889999999664
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00022 Score=83.32 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=106.8
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCcEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 206 (1205)
.|..+..++|.+..+..+.+++..... +.+.++|+.|+||||+|+.++....-. +.|..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 455667889999999999999876554 456789999999999999998875310 011112
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCc
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEK 280 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 280 (1205)
++++.+.... .+.++.+.+... .+++-++|+|+++... ..+.+...+-.
T Consensus 91 ~eidaas~~g----------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe--- 145 (486)
T PRK14953 91 IEIDAASNRG----------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE--- 145 (486)
T ss_pred EEEeCccCCC----------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc---
Confidence 2332222111 112222333222 1466799999997652 23333222211
Q ss_pred cccCCCCCeEEEEec-CchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 281 QSVDNQGRWTLLLAS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTT-r~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
......+|++| +...+...-......+++.+++.++....+.+.+..... .-..+++..|++.++|.+-.+..
T Consensus 146 ----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred ----CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12234444444 433333211233468999999999999888887732211 12245677889999997654433
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00015 Score=89.57 Aligned_cols=178 Identities=13% Similarity=0.197 Sum_probs=108.6
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC----------------------CC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED----------------------LF 203 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~----------------------~f 203 (1205)
.+..+.+++|.+..++.|..++...+. ..+.++|+.|+||||+|+.+++...-.. ++
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 455677889999999999999886554 4578999999999999999998764111 11
Q ss_pred cEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCC
Q 000975 204 DVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWD 277 (1205)
Q Consensus 204 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~ 277 (1205)
+ +++++......+.+ ++.+.+... .++.-++|||+++... ..+.+...+-.
T Consensus 90 d-v~eidaas~~~Vd~----------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 90 D-VTEIDAASHGGVDD----------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred c-EEEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 1 22332222222222 222222211 2355578999998763 23333322221
Q ss_pred CCccccCCCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 278 GEKQSVDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 278 ~~~~~~~~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
-...+.+|++|.+ ..+...-......|++..++.++....+.+.+...... -..+....|++.++|.+..
T Consensus 147 -------pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 147 -------PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred -------CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 1245555555543 33433113446789999999999999888876332221 1244567899999998843
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.8e-06 Score=59.21 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=21.5
Q ss_pred ceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC
Q 000975 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED 596 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~ 596 (1205)
+|++|++++|.|+.+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666666556666666666666665554
No 125
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.93 E-value=0.00016 Score=83.65 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=94.1
Q ss_pred ccCCccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcC---CCcEEEEEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKED---LFDVVVDAE 210 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~ 210 (1205)
|...+.++.|.+.+++++.+.+.- ...+-+.++|++|+|||++|+.+++...... .+....|++
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 444567788899998888877530 1234588999999999999999999865221 112344555
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH----HcCCeEEEEEcccccccc---------c-----cccc
Q 000975 211 VTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL----KKKKRVLVILDDIWTQIN---------L-----DDIG 272 (1205)
Q Consensus 211 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~---------~-----~~~~ 272 (1205)
+.... ++ ... .+ ........+.+.. ..+++++|+||+++.... . ..+.
T Consensus 257 v~~~e----Ll----~ky----vG--ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 257 IKGPE----LL----NKY----VG--ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred ccchh----hc----ccc----cc--hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 44321 11 100 00 1111222222222 235789999999985411 0 0111
Q ss_pred CCCCCCCccccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCC
Q 000975 273 IPFWDGEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGD 331 (1205)
Q Consensus 273 ~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 331 (1205)
..+. .+....+..||.||.......-++ .-...++++..+.++..++|+++...
T Consensus 323 ~~LD-----gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 323 SELD-----GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHhc-----ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1000 011223455666665554332122 22456899999999999999998754
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.93 E-value=9.9e-05 Score=93.04 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=95.9
Q ss_pred CccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEEEEecCCCCHHHHHHHHH
Q 000975 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
...+++||+++++++++.|......-+.++|++|+|||++|+.++.......- -+..+|. + +...++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 45678999999999999998655556679999999999999999998643211 1234442 1 111111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccc-cC-CCCCCCccccCCCCCeEEEEecCchhHHh-
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDI-GI-PFWDGEKQSVDNQGRWTLLLASRDQHVLR- 302 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~~-~~~~~~~~~~~~~~~s~ilvTTr~~~v~~- 302 (1205)
. +....+ ..++....+.+.+.+.++.+|++|++.....-..- +. ...+-++..+ ....-++|.+|...+...
T Consensus 248 a--g~~~~g--e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 248 A--GTKYRG--EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-ARGELQCIGATTLDEYRKH 322 (821)
T ss_pred c--cCCCcc--HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-hCCCcEEEEeCCHHHHHHH
Confidence 1 111111 23445555666555567899999999754211000 00 0000011111 123345666666554321
Q ss_pred -----hcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 303 -----INMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 303 -----~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
.-......+.++..+.++...+++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 012334578899999999888887543
No 127
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.1e-06 Score=89.26 Aligned_cols=186 Identities=18% Similarity=0.171 Sum_probs=120.5
Q ss_pred CCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcccccccccccccccccc
Q 000975 946 PGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREE 1025 (1205)
Q Consensus 946 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 1025 (1205)
..|+.|||+.-.++.-..... ...|.+|+.|.|.+ ..|.+- ....+..-.+|+.|+|+.|+.++....
T Consensus 185 sRlq~lDLS~s~it~stl~~i---Ls~C~kLk~lSlEg-~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~------- 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI---LSQCSKLKNLSLEG-LRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENAL------- 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH---HHHHHhhhhccccc-cccCcH-HHHHHhccccceeeccccccccchhHH-------
Confidence 358999999886554221111 12567888888888 566542 223344457899999999998876533
Q ss_pred ccccccccccceeccccCCCccccCCCcccC-CCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCc
Q 000975 1026 NLIEMVFPKLVYLSLSHLPQLSRFGIGNLVE-LPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPS 1104 (1205)
Q Consensus 1026 ~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~-l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 1104 (1205)
..+...++.|.+|+|+.|...+..-...+.+ -+.|..|+|+||.+- +...+++. -...+|+
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~t----------------L~~rcp~ 314 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKSHLST----------------LVRRCPN 314 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhhhHHHH----------------HHHhCCc
Confidence 1234568899999999986654432111222 368999999998653 11112111 1245899
Q ss_pred ceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccch--hHhhccCCcEEEEecC
Q 000975 1105 LEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSS--MMRSLKKLEHLSVIEC 1166 (1205)
Q Consensus 1105 L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~--~l~~l~sL~~L~i~~C 1166 (1205)
|.+|++++|-.++.--.. ..-.++.|++|.++.|-.+. |+. .+...|+|.+|++.+|
T Consensus 315 l~~LDLSD~v~l~~~~~~--~~~kf~~L~~lSlsRCY~i~---p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQ--EFFKFNYLQHLSLSRCYDII---PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccccccccCchHHH--HHHhcchheeeehhhhcCCC---hHHeeeeccCcceEEEEeccc
Confidence 999999999777641111 11236899999999997653 332 1567899999999998
No 128
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=3.6e-06 Score=101.70 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=88.0
Q ss_pred HhcCCCcEEEccCCCC--CCCCCcc--CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCC
Q 000975 509 AARKNPTAISIPFRDI--SELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINL 584 (1205)
Q Consensus 509 ~~~~~~r~lsl~~~~~--~~l~~~~--~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 584 (1205)
...++++++++++... ..-|... .+|.||+|.+.+-.+...--...+.++++|++||+|+++++.+ .++++|+||
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3356788888877543 1111112 6889999998876554332345567889999999999998888 678899999
Q ss_pred cEEEccCCcCCC---CccccccccCcEEEcccCCCCccch-------hccCCCccCEEeccC
Q 000975 585 RTLSFDCCHLED---VARVGDLAKLEILSFRNSHIEQLPE-------QIGNLTRLKLLDLSN 636 (1205)
Q Consensus 585 r~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~L~~ 636 (1205)
+.|.+.+=.+.. ...+.+|++|++||+|......-+. .-..|++||.||.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999888777664 4678888899999988764433321 112366777777665
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.90 E-value=7.3e-05 Score=77.93 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=93.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
...+.|+|..|+|||.|.+++++.......-..++|+++ .+....+...+... . ...+.+.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~-----~----~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDG-----E----IEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT-----S----HHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcc-----c----chhhhhhhh--
Confidence 356899999999999999999998765433345777754 34444444443221 1 233444453
Q ss_pred CeEEEEEcccccccc---ccc-ccCCCCCCCccccCCCCCeEEEEecCchhHH-h-------hcCCCCceEEccCCChHh
Q 000975 253 KRVLVILDDIWTQIN---LDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-R-------INMSNPRIFSISTLADGE 320 (1205)
Q Consensus 253 k~~LlVlDdv~~~~~---~~~-~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-~-------~~~~~~~~~~l~~L~~~e 320 (1205)
.-=+|++||++.... |+. +...+.. + ...|.+||+|++..... . ..+...-++++++.++++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~-----~-~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNR-----L-IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHH-----H-HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHH-----H-HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 445889999987632 222 1111100 0 13466899999654321 0 023345689999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 321 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
-.+++++.+.... -.-.+++++-|++++.+..-.+..
T Consensus 171 r~~il~~~a~~~~-~~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 171 RRRILQKKAKERG-IELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHhhcCCHHHHHH
Confidence 9999999884311 113356777777777665544433
No 130
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.90 E-value=2.4e-06 Score=103.11 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=106.9
Q ss_pred cCCcceeeecccc-ccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcccccccccccccccc
Q 000975 945 FPGLKKLEMVSIN-IERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGR 1023 (1205)
Q Consensus 945 ~~~L~~L~L~~~~-l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 1023 (1205)
+++|+.|+++.+. +++...... ...+++|++|.+.+|..+++.........+++|++|+|++|..+++-..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l---~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l----- 313 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSAL---ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL----- 313 (482)
T ss_pred cCCcCccchhhhhccCchhHHHH---HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH-----
Confidence 4555666666663 333221111 1136788888888888777665555667778888888888887743211
Q ss_pred ccccccccccccceeccccC---CCccccCCCcccCCC--CcceeeeccCcccccccccccccccCCCCCCCCccccccc
Q 000975 1024 EENLIEMVFPKLVYLSLSHL---PQLSRFGIGNLVELP--SLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDE 1098 (1205)
Q Consensus 1024 ~~~~~~~~~~~L~~L~l~~c---~~L~~~~~~~l~~l~--~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~ 1098 (1205)
......+++|+.|.+..+ +.++......+.... .+..+.+.+|++++.+.....
T Consensus 314 --~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~------------------- 372 (482)
T KOG1947|consen 314 --EALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC------------------- 372 (482)
T ss_pred --HHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh-------------------
Confidence 011233666666555443 446555443333333 677777777777776542111
Q ss_pred ccccCcce-eeeecccccch-hhccCCCCCCcccCccEEEecccccccccccchhHhh-ccCCcEEEEecCCCceee
Q 000975 1099 KVMLPSLE-ELSIALMRNLR-KIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRS-LKKLEHLSVIECESLKEI 1172 (1205)
Q Consensus 1099 ~~~l~~L~-~L~i~~c~~l~-~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~-l~sL~~L~i~~C~~l~~~ 1172 (1205)
. ..... .+.+.+|+.++ .+.... ....+++.|.+..|...+...-.. ... ...++.+.+.+|+.+...
T Consensus 373 -~-~~~~~~~~~l~gc~~l~~~l~~~~---~~~~~l~~L~l~~~~~~t~~~l~~-~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 373 -G-ISDLGLELSLRGCPNLTESLELRL---CRSDSLRVLNLSDCRLVTDKGLRC-LADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred -h-ccCcchHHHhcCCcccchHHHHHh---ccCCccceEecccCccccccchHH-HhhhhhccccCCccCcccccch
Confidence 0 11222 45566666662 221111 112338888888888776531111 112 666777888888777554
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00028 Score=81.99 Aligned_cols=186 Identities=15% Similarity=0.207 Sum_probs=107.4
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc---------------------CCCc
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE---------------------DLFD 204 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~ 204 (1205)
.|..+..++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++....-. .+++
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 355677889999999999999876554 567899999999999999998875321 1122
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccc
Q 000975 205 VVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (1205)
Q Consensus 205 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 282 (1205)
++++.......+.++ +.+.+.+.. .-..+++-++|+|+++... ..+.+...+-.
T Consensus 92 -~~~i~g~~~~gid~i-r~i~~~l~~-----------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe----- 147 (451)
T PRK06305 92 -VLEIDGASHRGIEDI-RQINETVLF-----------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE----- 147 (451)
T ss_pred -eEEeeccccCCHHHH-HHHHHHHHh-----------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----
Confidence 122221111111121 112111110 0011466788999987652 22233222211
Q ss_pred cCCCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHHHHH
Q 000975 283 VDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTI 359 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 359 (1205)
....+.+|++|.. ..+...-......+++.++++++....+.+.+..... .-.++.+..|++.++|.+ .|+..+
T Consensus 148 --p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 148 --PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred --CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235556665543 2222211334568999999999999888887632211 123456788999999966 344433
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.89 E-value=0.0001 Score=82.80 Aligned_cols=153 Identities=10% Similarity=0.084 Sum_probs=89.2
Q ss_pred ccccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 145 RFSVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 145 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
...|.....++|++...+.+..++..+.. .++.++|++|+||||+|+.+++... .. +..++.+. .....+ +.
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~~~i-~~ 86 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRIDFV-RN 86 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccHHHH-HH
Confidence 44567778889999999999999876554 5666799999999999999988753 22 23444444 222111 11
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHH-cCCeEEEEEcccccccc--c-ccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQIN--L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--~-~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
.+.. ...... .+.+-++|+||++.... . ..+...+.. ...++++|+||....
T Consensus 87 ~l~~-----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 87 RLTR-----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------YSKNCSFIITANNKN 142 (316)
T ss_pred HHHH-----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------cCCCceEEEEcCChh
Confidence 1111 001110 12456789999976511 1 112111111 235678888886543
Q ss_pred HH-hhcCCCCceEEccCCChHhHHHHHHHH
Q 000975 300 VL-RINMSNPRIFSISTLADGEAKSLFEKI 328 (1205)
Q Consensus 300 v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (1205)
.. ..-......+.++..+.++..+++...
T Consensus 143 ~l~~~l~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 143 GIIEPLRSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hchHHHHhhceEEEeCCCCHHHHHHHHHHH
Confidence 22 101223356778788888877766543
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00031 Score=81.84 Aligned_cols=186 Identities=13% Similarity=0.156 Sum_probs=109.6
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCC------------------C-cEE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDL------------------F-DVV 206 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~i~G~~GiGKTtLa~~v~~~~~~~~~------------------f-~~~ 206 (1205)
.|..+..++|.+...+.+...+..++.+ ++.++|+.|+||||+|+.++...--... + .-+
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4556778899999999999888766554 5689999999999999999887521110 0 112
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccC
Q 000975 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 284 (1205)
++++.+....+.++. ++.+...... ..+++-++|+|+++... ..+++...+-.
T Consensus 89 ~eldaas~~gId~IR-elie~~~~~P-----------------~~~~~KVvIIDEad~Lt~~A~NALLK~LEE------- 143 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKYKP-----------------SMARFKIFIIDEVHMLTKEAFNALLKTLEE------- 143 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhhCc-----------------ccCCeEEEEEECcccCCHHHHHHHHHHHhh-------
Confidence 333322221222221 1111110000 01356688999997653 23333222211
Q ss_pred CCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 285 NQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
....+++|++|.+.. +...-......+++.+++.++....+.+.+..... .-.++++..|++.++|.+--+..
T Consensus 144 pp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 144 PPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred cCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHH
Confidence 134566666666542 22111234568999999999999999887743221 12246778999999998844433
No 134
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=1.1e-06 Score=78.86 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=79.4
Q ss_pred CcEEEccCCCCCCCCCcc----CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 514 PTAISIPFRDISELPDSL----QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~----~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
...++++.+.+..+++.. ....|...++++|.+. .+|+.+-.+++.++.|+|++|.|.++|..+..++.||.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445566666665554432 5666777788888776 67777777777888888888888888888888888888888
Q ss_pred cCCcCCC-CccccccccCcEEEcccCCCCccchh
Q 000975 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQ 622 (1205)
Q Consensus 590 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~ 622 (1205)
+.|.+.. |..|..|.+|-+||..+|.+.++|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888776 77777788888888877777777654
No 135
>PRK05642 DNA replication initiation factor; Validated
Probab=97.88 E-value=0.00019 Score=75.85 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=90.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.|+|..|+|||.||+.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~-~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ-Y 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-C
Confidence 578999999999999999999876532 24567876543 1110 0123333432 2
Q ss_pred eEEEEEcccccc---ccccc-ccCCCCCCCccccCCCCCeEEEEecCchhHHh-h-------cCCCCceEEccCCChHhH
Q 000975 254 RVLVILDDIWTQ---INLDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR-I-------NMSNPRIFSISTLADGEA 321 (1205)
Q Consensus 254 ~~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~-~-------~~~~~~~~~l~~L~~~e~ 321 (1205)
=++|+||+... ..|+. +...+.. + ...|..||+|++...-.- . .+....+++++++++++-
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~-----~-~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNR-----L-RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHH-----H-HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 26889999744 23433 2211110 0 134567888887543221 0 122346789999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 322 KSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 322 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
.+.+++++.... -.-.+++..-|++++.|-.-++..+
T Consensus 172 ~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 172 LRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 999996662211 1122567788888888876544433
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=1.5e-06 Score=101.18 Aligned_cols=108 Identities=28% Similarity=0.385 Sum_probs=59.6
Q ss_pred hCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEecc
Q 000975 556 DGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLS 635 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 635 (1205)
..+++|..|++.+|.|..+...+..+++|++|++++|.|+....+..+..|+.|++++|.|..++ .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 44555666666666655554445556666666666666655555555555666666666555554 34445666666666
Q ss_pred CCCCCCccCh-hhhcCCCCCCEEEccCCcCcc
Q 000975 636 NCSKLKVIKP-EVISRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 636 ~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~ 666 (1205)
+|. +..+.. . ...+.+|+.+++.+|.+..
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchhc
Confidence 543 444433 1 2455556666665555443
No 137
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00011 Score=85.29 Aligned_cols=166 Identities=15% Similarity=0.118 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++.. .+....+.+.+. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~-------~~~~~~~~~~~~--~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT-------HKEIEQFKNEIC--Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh-------hhHHHHHHHHhc--c
Confidence 45889999999999999999997654333345566644 34556665555321 012333444443 3
Q ss_pred eEEEEEccccccc---cc-ccccCCCCCCCccccCCCCCeEEEEecCchhH---------HhhcCCCCceEEccCCChHh
Q 000975 254 RVLVILDDIWTQI---NL-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV---------LRINMSNPRIFSISTLADGE 320 (1205)
Q Consensus 254 ~~LlVlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v---------~~~~~~~~~~~~l~~L~~~e 320 (1205)
.-+||+||+.... .+ +.+...+.. + ...|..||+|+..... .. .+...-++++++++.++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~-----~-~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNN-----F-IENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKT 279 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHH-----H-HHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHH
Confidence 4588999997642 11 222111111 0 1234468888764421 11 23345678899999999
Q ss_pred HHHHHHHHhCCCCC-CCchHHHHHHHHHhcCCChHHHHHHHH
Q 000975 321 AKSLFEKIVGDSAK-ESDCRAIGVEIVGKCGGLPIAVSTIAN 361 (1205)
Q Consensus 321 ~~~Lf~~~~~~~~~-~~~~~~~~~~i~~~~~glPLai~~~~~ 361 (1205)
-.+++++++..... ..-.+++..-|++.++|.|-.+.-+..
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99999999843211 123467888999999999976665543
No 138
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.86 E-value=0.00017 Score=76.94 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=106.8
Q ss_pred ccCCChHHHHHHHHHhccCC---ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhC
Q 000975 153 HFPSRNPVFQKMMESLRDSN---VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~---~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (1205)
.+.+|+.++..+...+.+.. +..|.|+|-+|+|||.+.+.+.+... . ..+|+++-+.++.+.++..|+.+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHHHHHhc
Confidence 45689999999998887433 23458999999999999999999874 2 2489999999999999999999986
Q ss_pred -CCCCCCCCH--HHHHHHHHHHHHc-------CCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 230 -LEIVRPDSL--VEKANQLRQALKK-------KKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 230 -~~~~~~~~~--~~~~~~l~~~l~~-------~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
.+.++.... .+........+.+ ++.++||+|+++...+.++..-+.--.+...+ +.+...|+...-..+
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~-~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL-NEPTIVIILSAPSCE 160 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh-CCCceEEEEeccccH
Confidence 333222111 1222222222221 46899999999887655543111111111112 233444444333222
Q ss_pred -HHhhcCCC--CceEEccCCChHhHHHHHHHH
Q 000975 300 -VLRINMSN--PRIFSISTLADGEAKSLFEKI 328 (1205)
Q Consensus 300 -v~~~~~~~--~~~~~l~~L~~~e~~~Lf~~~ 328 (1205)
.....++. ..++..+.-+.+|..+++.+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22212343 346677889999999888764
No 139
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=3e-07 Score=104.16 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred cCCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEE
Q 000975 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLS 588 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~ 588 (1205)
|..+...+.++|.+..+-..+ -++.|++|+|++|++. .+. ++..+++|+.|||++|.+..+|.- ...+. |+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 334566666767665555444 4566777777777765 232 456677777777777777666542 22333 77777
Q ss_pred ccCCcCCCCccccccccCcEEEcccCCCCccc--hhccCCCccCEEeccCCC
Q 000975 589 FDCCHLEDVARVGDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 589 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~ 638 (1205)
+++|.++....+.+|++|+.||+++|-+.... ..++.|..|+.|.|.+|.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77776666666667777777777766444221 124556666666666654
No 140
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=4.2e-06 Score=87.62 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=17.0
Q ss_pred CCcCCcEEEccCCcCCC--C----ccccccccCcEEEcccCCCC
Q 000975 580 SLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIE 617 (1205)
Q Consensus 580 ~L~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~ 617 (1205)
.+++|++|+||.|-+.. + .-+.++..|++|.|.+|.+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 44455555555554332 1 22334445555555555443
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.85 E-value=6.8e-05 Score=81.14 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=68.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
..-+.++|++|+||||+|+.+++.......-....++.++.. ++... ..+ . . . ..+.+.+...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~---~~g-----~-~-~---~~~~~~~~~a 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE---YIG-----H-T-A---QKTREVIKKA 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh---hcc-----c-h-H---HHHHHHHHhc
Confidence 345789999999999999999987532221111122332221 11111 011 0 1 1 1222223322
Q ss_pred CeEEEEEccccccc----------ccccccCCCCCCCccccCCCCCeEEEEecCchhHH-------hhcCCCCceEEccC
Q 000975 253 KRVLVILDDIWTQI----------NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-------RINMSNPRIFSIST 315 (1205)
Q Consensus 253 k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-------~~~~~~~~~~~l~~ 315 (1205)
...+|++|+++... ..+.+...... ......+|+++...+.. .........+++++
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~-------~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED-------NRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhc-------cCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECC
Confidence 34588999997632 11212111111 22333555555443221 11011235689999
Q ss_pred CChHhHHHHHHHHhC
Q 000975 316 LADGEAKSLFEKIVG 330 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~ 330 (1205)
++.+|-.+++.+.+.
T Consensus 178 ~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 178 YTVEELMEIAERMVK 192 (261)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998874
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00043 Score=82.66 Aligned_cols=194 Identities=13% Similarity=0.161 Sum_probs=106.4
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.|..+..++|++...+.+.+++.... .+.+.++|+.|+||||+|+.++....-....+. ...+.-...+.|.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~ 83 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT 83 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence 45667789999999999999987554 456778999999999999999876532110000 0000001111111
Q ss_pred HHhCCCC---CC-CCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEE-e
Q 000975 226 DQLGLEI---VR-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL-A 294 (1205)
Q Consensus 226 ~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv-T 294 (1205)
.....+. +. .....+.+..+.+... .++.-++|+|+++... .+..+...+-. ......+|+ |
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-------pp~~~ifIlat 156 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-------PPAHVIFILAT 156 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-------CCCCeEEEEEe
Confidence 1000000 00 0011222333333322 2456688999998652 33443322211 122344444 4
Q ss_pred cCchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 295 SRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 295 Tr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
|....+...-......+++.+++.++....+...+...... -..+....|++.++|.+..
T Consensus 157 t~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE-YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred CChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 44333332113345678999999999999988877332111 1245677889999987743
No 143
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=3.9e-06 Score=97.71 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=63.0
Q ss_pred EEEccCCCCCCCCC-ccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcC
Q 000975 516 AISIPFRDISELPD-SLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHL 594 (1205)
Q Consensus 516 ~lsl~~~~~~~l~~-~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 594 (1205)
.+++..|.+..+.. .-.+.+|..|++.+|.+. .+... +..+.+|++|++++|.|..+.. +..+..|+.|++++|.|
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLI 152 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchh-hcccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcc
Confidence 33344444444222 225556666666666554 22221 2445666666666666655532 44555566666666666
Q ss_pred CCCccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCC
Q 000975 595 EDVARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNC 637 (1205)
Q Consensus 595 ~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 637 (1205)
..+..+..+.+|+.+++++|.+..++.. ...+.+|+.+.+.+|
T Consensus 153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 153 SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 6555555566666666666655555432 355555666665553
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0004 Score=83.56 Aligned_cols=198 Identities=14% Similarity=0.147 Sum_probs=109.6
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.+..+..++|.+..+..+..++.... .+.+.++|+.|+||||+|+.++...--.. .+.... .....-...+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPTP----EPCGKCELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCCC----CCCcccHHHHHHh
Confidence 34566778899999999988887654 35778999999999999999998864211 100000 0011111222222
Q ss_pred HHhCCC-----CCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 226 DQLGLE-----IVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 226 ~~l~~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
.....+ .... ...+.++.+.+... .+++-++|+|+++... .++.+...+-. ....+.+|++
T Consensus 86 ~g~h~D~~ei~~~~~-~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-------Pp~~tvfIL~ 157 (620)
T PRK14948 86 AGNALDVIEIDAASN-TGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-------PPPRVVFVLA 157 (620)
T ss_pred cCCCccEEEEecccc-CCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-------CCcCeEEEEE
Confidence 111110 0000 11222333333222 1355688999998753 33434322211 1234455555
Q ss_pred cCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 295 SRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 295 Tr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
|.+. .+...-......+++..++.++....+.+.+...... -..+.+..|++.++|.+..+..
T Consensus 158 t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 158 TTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 5443 3322113345678899999999888888777432111 1235678899999998754443
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=9.2e-05 Score=83.08 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=72.8
Q ss_pred cccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 152 VHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
.+.++.+..++.+...+.. .+.|.++|++|+|||++|+.+++.......|+.+.||.+.+..+..+++..+.- .+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCC
Confidence 4466788888999888874 346788999999999999999998765567889999999998887766532210 0100
Q ss_pred CCCCCCHHHHHHHHHHHHHc-CCeEEEEEccccccc
Q 000975 232 IVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQI 266 (1205)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~ 266 (1205)
....+. ...+.+.+.... .+++++|+|++....
T Consensus 252 y~~~~G--~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 252 FRRKDG--IFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred eEecCc--hHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 000000 011122222222 478999999998763
No 146
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.6e-05 Score=56.96 Aligned_cols=38 Identities=39% Similarity=0.611 Sum_probs=21.8
Q ss_pred cCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCcc
Q 000975 605 KLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVI 643 (1205)
Q Consensus 605 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~ 643 (1205)
+|++|++++|+|+.+|..+++|++|++|++++|. ++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 5566666666666666556666666666666643 5444
No 147
>CHL00181 cbbX CbbX; Provisional
Probab=97.81 E-value=0.00032 Score=76.26 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .++.... .+. ... ...+.+.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~------~~~----~~~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH------TAP----KTKEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc------chH----HHHHHHHHcc
Confidence 3478999999999999999988754322211112444441 1222111 111 111 1122232223
Q ss_pred eEEEEEccccccc------cc-----ccccCCCCCCCccccCCCCCeEEEEecCchhHHh-------hcCCCCceEEccC
Q 000975 254 RVLVILDDIWTQI------NL-----DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR-------INMSNPRIFSIST 315 (1205)
Q Consensus 254 ~~LlVlDdv~~~~------~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~-------~~~~~~~~~~l~~ 315 (1205)
.-+|++|++.... ++ +.+...+.. ...+.+||+++....... ........+++++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~-------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN-------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCC
Confidence 4589999997531 11 111111111 234567777776433211 1112345899999
Q ss_pred CChHhHHHHHHHHhC
Q 000975 316 LADGEAKSLFEKIVG 330 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~ 330 (1205)
++.+|..+++.+.+.
T Consensus 196 ~t~~el~~I~~~~l~ 210 (287)
T CHL00181 196 YTPEELLQIAKIMLE 210 (287)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998873
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00041 Score=78.80 Aligned_cols=183 Identities=15% Similarity=0.195 Sum_probs=101.8
Q ss_pred ccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
|...+.++.|-+..++++.+.+. . ...+-|.++|++|+|||++|+.+++... ..| +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f---i~i~~-- 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF---IRVVG-- 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE---EEEeh--
Confidence 44556778888888887777653 1 2346688999999999999999998754 233 22211
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cccccCCCCCCCcc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEKQ 281 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~~~~~~~~~~~~~ 281 (1205)
..+... ..+ ........+.+......+.+|++|+++.... .......+...+ +
T Consensus 213 ----s~l~~k---~~g-------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l-d 277 (398)
T PTZ00454 213 ----SEFVQK---YLG-------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM-D 277 (398)
T ss_pred ----HHHHHH---hcc-------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh-h
Confidence 111111 111 1122334444444446789999999875310 000000000000 0
Q ss_pred ccCCCCCeEEEEecCchhHHhhc-C---CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 282 SVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+....+..||+||.......-+ . .-...++++..+.++..++|+.........++. -..++++...|.-
T Consensus 278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 01123466788888866544211 2 224578999999999888888776432222211 1345666666654
No 149
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00077 Score=80.11 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=109.5
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCc
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFD 204 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~ 204 (1205)
..|..+.+++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+++..--.. +++
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 3466777899999999999999876554 4578999999999999999998754211 121
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCC
Q 000975 205 VVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDG 278 (1205)
Q Consensus 205 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~ 278 (1205)
. ++++...... .+.+..+.+.+. .+++-++|+|+++... .++.+...+-.
T Consensus 90 v-~~idgas~~~----------------------vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe- 145 (563)
T PRK06647 90 V-IEIDGASNTS----------------------VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE- 145 (563)
T ss_pred e-EEecCcccCC----------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-
Confidence 1 1221111111 122222222211 1456688999988763 24444333322
Q ss_pred CccccCCCCCeEEEEecCc-hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHH
Q 000975 279 EKQSVDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 279 ~~~~~~~~~~s~ilvTTr~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
....+.+|++|.. ..+...-......+++.+++.++....+.+.+.... .+-.++.+..|++.++|.+-.+.
T Consensus 146 ------pp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 146 ------PPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred ------CCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2345566655544 333221133455789999999999988888773221 12234667789999999875443
No 150
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00027 Score=86.62 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=95.7
Q ss_pred CccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-C---CcEEEEEEecCCCCHHHHHHHHH
Q 000975 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-L---FDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
....++||++++.++++.|......-+.++|++|+|||++|+.++....... . .++.+|.. +...+ +
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l 254 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L 254 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h
Confidence 3457899999999999988865445567999999999999999998753221 1 23445521 11111 1
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc----------cccccCCCCCCCccccCCCCCeEEEEec
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------LDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
. +....+ ..+.....+.+.+.+.++.+|++|++..... ...+..++ + ....-+||-+|
T Consensus 255 a--G~~~~G--e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~-------L-~~g~i~vIgAT 322 (758)
T PRK11034 255 A--GTKYRG--DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-------L-SSGKIRVIGST 322 (758)
T ss_pred c--ccchhh--hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH-------H-hCCCeEEEecC
Confidence 0 111111 2334455555556555678999999985411 11111111 1 23345566666
Q ss_pred CchhHHh------hcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 296 RDQHVLR------INMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 296 r~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
...+... .-.+....++++..+.+++.++++...
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 5544211 002234589999999999999998765
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.70 E-value=0.00054 Score=74.63 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCe
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKR 254 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 254 (1205)
-+.++|++|+|||++|+.++............-|+.++. .++ ...+... +.. .+.+.+.+-..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~-----~~~----~~~~~~~~a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH-----TAP----KTKEILKRAMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc-----chH----HHHHHHHHccC
Confidence 578999999999999998887765322222112443332 122 1111111 111 12222332344
Q ss_pred EEEEEccccccc------cc-----ccccCCCCCCCccccCCCCCeEEEEecCchhHHhh-------cCCCCceEEccCC
Q 000975 255 VLVILDDIWTQI------NL-----DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI-------NMSNPRIFSISTL 316 (1205)
Q Consensus 255 ~LlVlDdv~~~~------~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~-------~~~~~~~~~l~~L 316 (1205)
-+|+||++.... .| +.+...+.. ...+.+||+++........ .......++++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~-------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN-------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 689999997420 11 111111111 2345677777654322110 0112457999999
Q ss_pred ChHhHHHHHHHHhC
Q 000975 317 ADGEAKSLFEKIVG 330 (1205)
Q Consensus 317 ~~~e~~~Lf~~~~~ 330 (1205)
+.+|-.+++...+.
T Consensus 196 ~~edl~~I~~~~l~ 209 (284)
T TIGR02880 196 SEAELLVIAGLMLK 209 (284)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998873
No 152
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=7.7e-07 Score=101.02 Aligned_cols=78 Identities=29% Similarity=0.370 Sum_probs=35.9
Q ss_pred hCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCc--cccccccCcEEEcccCCCCccchhccCCCccCEEe
Q 000975 556 DGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVA--RVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLD 633 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~--~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 633 (1205)
.-++.|+.|||++|.++.+- .+..|++|++|||++|.+...+ ....++ |+.|.+++|.++++- +|.+|.+|+.||
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccc
Confidence 34445555555555544443 3444555555555555544411 111222 555555555444442 344555555555
Q ss_pred ccC
Q 000975 634 LSN 636 (1205)
Q Consensus 634 L~~ 636 (1205)
+++
T Consensus 261 lsy 263 (1096)
T KOG1859|consen 261 LSY 263 (1096)
T ss_pred hhH
Confidence 554
No 153
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.66 E-value=0.00053 Score=78.38 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=101.0
Q ss_pred ccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
|...+.++.|.+.+++++.+.+. . ...+-|.++|++|+|||++|+.+++... ..| +.+..+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f---i~V~~se 252 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF---LRVVGSE 252 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE---EEEecch
Confidence 44556677888888888877663 1 1245688999999999999999999764 333 2221111
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc--ccc----------cCCCCCCCcc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL--DDI----------GIPFWDGEKQ 281 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~~----------~~~~~~~~~~ 281 (1205)
+.... .+ .....+..+.+......+.+|+||+++....= ... ...+...+ +
T Consensus 253 ------L~~k~---~G-------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L-d 315 (438)
T PTZ00361 253 ------LIQKY---LG-------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL-D 315 (438)
T ss_pred ------hhhhh---cc-------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH-h
Confidence 11110 00 11222333444344457889999998753110 000 00000000 0
Q ss_pred ccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 282 SVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+....+.+||+||........+. .-...++++..+.++..++|..++......++. -...++..+.|.-
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 011234567888888665543222 224578999999999999999887432222111 1234555555543
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.63 E-value=0.00081 Score=85.20 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=94.3
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEE-EEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVD-AEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~ 222 (1205)
+....+++||+.++.++++.|......-+.++|++|+|||++|..++........ .+..+| ++++ .+.
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~- 241 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI- 241 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh-
Confidence 3456678999999999999997655566779999999999999999988642211 122233 3221 110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHc-CCeEEEEEcccccccc---------cccccCCCCCCCccccCCCCCeEEE
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQIN---------LDDIGIPFWDGEKQSVDNQGRWTLL 292 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~il 292 (1205)
. +....+ ..+.....+.+.+.+ +++.+|++|++..... ...+..+ .+ ....-++|
T Consensus 242 ---a--~~~~~g--~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~-------~l-~~g~i~~I 306 (852)
T TIGR03346 242 ---A--GAKYRG--EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP-------AL-ARGELHCI 306 (852)
T ss_pred ---h--cchhhh--hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhch-------hh-hcCceEEE
Confidence 0 000000 223344455555533 4689999999986421 1111111 11 22334566
Q ss_pred EecCchhHHh------hcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 293 LASRDQHVLR------INMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 293 vTTr~~~v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
-+|...+... .-......+.++..+.++...+++...
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5555554311 012234578899999999999988665
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00069 Score=81.40 Aligned_cols=182 Identities=15% Similarity=0.226 Sum_probs=107.8
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCcE
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDV 205 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~ 205 (1205)
.|..+..++|.+...+.+.+++..++. ..+.++|+.|+||||+|+.++....-.. +++.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 456677899999999999998876554 4568999999999999999988753111 1111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEcccccccc--cccccCCCCCCC
Q 000975 206 VVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQIN--LDDIGIPFWDGE 279 (1205)
Q Consensus 206 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~ 279 (1205)
+.++...... .+.++.+.+... .+++-++|+|+|+.... .+.+...+-.
T Consensus 91 -~eid~~s~~~----------------------v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-- 145 (576)
T PRK14965 91 -FEIDGASNTG----------------------VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-- 145 (576)
T ss_pred -eeeeccCccC----------------------HHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc--
Confidence 1111111111 122233333322 13455789999976532 3333222211
Q ss_pred ccccCCCCCeEEEEec-CchhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHHH
Q 000975 280 KQSVDNQGRWTLLLAS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVS 357 (1205)
Q Consensus 280 ~~~~~~~~~s~ilvTT-r~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~ 357 (1205)
....+.+|++| ....+...-......+++++++.++....+...+...... -..+....|++.++|.. .|+.
T Consensus 146 -----pp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~ 219 (576)
T PRK14965 146 -----PPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLS 219 (576)
T ss_pred -----CCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 12345555544 4444443123445688999999999988888766332111 22456778999999865 4444
Q ss_pred HH
Q 000975 358 TI 359 (1205)
Q Consensus 358 ~~ 359 (1205)
.+
T Consensus 220 ~L 221 (576)
T PRK14965 220 TL 221 (576)
T ss_pred HH
Confidence 44
No 156
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.61 E-value=1.4e-05 Score=96.53 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=79.5
Q ss_pred hhhhchhhcccccCchh--hhhhhccCCCccccceEEeecC-CceeEee--cCCCCCcccccccccccccccccceeccc
Q 000975 747 LKTTEDLYLDNLNGIQN--IVQELDNGEGFPRLKHLHVQND-PKILCIA--NSEGPVIFPLLQSLFLCNLILLEKVCGSQ 821 (1205)
Q Consensus 747 l~~L~~L~l~~~~~~~~--~~~~l~~~~~l~~L~~L~L~~~-~~l~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 821 (1205)
.++|+.|.+.++....+ ..... ...++|+.|++.++ ......+ .......+++|+.|.+..+..+.......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 57888888888776655 33333 67899999999873 2222111 11134456788888888877655443322
Q ss_pred cccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccch
Q 000975 822 VQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKIL 871 (1205)
Q Consensus 822 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 871 (1205)
+. ..+++|+.|.+.+|..+++..-..+...+++|++|++++|..+
T Consensus 264 l~-----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LA-----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HH-----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22 2378999999888987766554556678899999999998876
No 157
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.1e-05 Score=92.77 Aligned_cols=132 Identities=22% Similarity=0.246 Sum_probs=92.3
Q ss_pred CCcceEEEeecCC-CCCCCChhhhhCCCceeEEEeeCCCCC--CcccccCCCcCCcEEEccCCcCCCCccccccccCcEE
Q 000975 533 CTRLKLFLLFTED-SSLQIPNQFFDGMTELLVLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEIL 609 (1205)
Q Consensus 533 ~~~Lr~L~l~~n~-~~~~~~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L 609 (1205)
-.+|+.|++++.. ++...|..+...+++|+.|.+++-.+. ++-.-..+++||+.||++++.++....+++|++||.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 4578888888764 344556666778889999998887654 3444466788899999999988888888889999998
Q ss_pred EcccCCCCccc--hhccCCCccCEEeccCCCCCCcc--Ch---hhhcCCCCCCEEEccCCcC
Q 000975 610 SFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVI--KP---EVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 610 ~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~--~~---~~l~~L~~L~~L~l~~~~~ 664 (1205)
.+++=.+..-+ ..+.+|++|++||+|.......- .. +--..|++|+.|+.+++.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 88876665322 35678888888888874332221 10 1123477888888776543
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.001 Score=83.73 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=93.5
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----Cc-EEEEEEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FD-VVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~ 222 (1205)
+....+++||+.++.++++.|......-+.++|++|+|||++|+.++........ .+ .+++++++.-..
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a------ 247 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------ 247 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh------
Confidence 4456779999999999999998666566779999999999999999998642111 12 233333322100
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHH-cCCeEEEEEccccccccc---------ccccCCCCCCCccccCCCCCeEEE
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQINL---------DDIGIPFWDGEKQSVDNQGRWTLL 292 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~il 292 (1205)
+....+ ..+.....+.+.+. .+++.+|++|++.....- ..+..+. + ..+.-++|
T Consensus 248 ------g~~~~g--~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~-------l-~~g~l~~I 311 (857)
T PRK10865 248 ------GAKYRG--EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA-------L-ARGELHCV 311 (857)
T ss_pred ------ccchhh--hhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch-------h-hcCCCeEE
Confidence 000000 12333444444443 257899999999865211 1111111 1 23344666
Q ss_pred EecCchhHH------hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 293 LASRDQHVL------RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 293 vTTr~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
-+|...+.. .........+.+..-+.++..++++...
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 666555431 1012233466777779999999887655
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.56 E-value=0.00057 Score=79.38 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.|+|+.|+|||+||+.+++....+..-..++|+++. ++...+...+... . ...+.+.+. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~--~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN-----K----MEEFKEKYR--S 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC-----C----HHHHHHHHH--h
Confidence 468899999999999999999987643222356677543 3333444443221 1 223344443 2
Q ss_pred eEEEEEccccccccc----ccccCCCCCCCccccCCCCCeEEEEecCchhHH-h-------hcCCCCceEEccCCChHhH
Q 000975 254 RVLVILDDIWTQINL----DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-R-------INMSNPRIFSISTLADGEA 321 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~~----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-~-------~~~~~~~~~~l~~L~~~e~ 321 (1205)
.-+|||||++....- +.+...+.. + ...+..+|+|+....-. . ..+.....+++++.+.++-
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~-----~-~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNA-----L-HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHH-----H-HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 348899999864221 111111100 0 12345677877643211 0 0123345789999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 322 KSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 322 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
..++++.+.... ..-.+++...|++.+.|..-.+
T Consensus 274 ~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 274 LAILQKKAEEEG-LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHH
Confidence 999999984421 1223567778888888766543
No 160
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0054 Score=62.53 Aligned_cols=184 Identities=16% Similarity=0.176 Sum_probs=106.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec-CCCCHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHH
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT-HTPDWKEICGRIADQLGLEIVRPD--SLVEKANQLR 246 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~ 246 (1205)
.++.+++.++|.-|+|||.+.+....... + +.++-+.++ +..+...+...|+..+..+....- ........+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45567999999999999999996555543 1 122223333 345677788888888877332210 1122334455
Q ss_pred HHHHcCCe-EEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEec--------CchhHHhhcCCCCceEEccC
Q 000975 247 QALKKKKR-VLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS--------RDQHVLRINMSNPRIFSIST 315 (1205)
Q Consensus 247 ~~l~~~k~-~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTT--------r~~~v~~~~~~~~~~~~l~~ 315 (1205)
...++++| ..+++||+.+.. .++.++ -|++...++ .++ -+|+..- |............-.|++.|
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lr-ll~nl~~~~--~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALR-LLTNLEEDS--SKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHH-HHHhhcccc--cCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 55566777 999999987752 222221 011100000 111 1233222 22222221111222399999
Q ss_pred CChHhHHHHHHHHhCCCCCCC--chHHHHHHHHHhcCCChHHHHHHHH
Q 000975 316 LADGEAKSLFEKIVGDSAKES--DCRAIGVEIVGKCGGLPIAVSTIAN 361 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~~~~~~~--~~~~~~~~i~~~~~glPLai~~~~~ 361 (1205)
++.++...+++.+.+....++ -.++....|.....|.|.+|..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999998884322211 2245677899999999999987764
No 161
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0016 Score=69.25 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=109.3
Q ss_pred cccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
.|...+.++-|=++++++|.+... . +..+=|.+||++|+|||-||++|+++.. .. |+.+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--At-----FIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--AT-----FIRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ce-----EEEec
Confidence 345566777888999988888764 1 2345588999999999999999999865 32 33333
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cc----cccCCCC
Q 000975 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LD----DIGIPFW 276 (1205)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~----~~~~~~~ 276 (1205)
.. ++ .+..-+ .....+..+.+.-+...+..|++|.++.... .+ ++...+-
T Consensus 218 gS----El----VqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 218 GS----EL----VQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred cH----HH----HHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 21 22 222111 2234455666655667899999999875310 00 0100000
Q ss_pred CCCccccCCCCCeEEEEecCchhHHhhc---C-CCCceEEccCCChHhHHHHHHHHhCCCC--CCCchHHHHHHHHHhcC
Q 000975 277 DGEKQSVDNQGRWTLLLASRDQHVLRIN---M-SNPRIFSISTLADGEAKSLFEKIVGDSA--KESDCRAIGVEIVGKCG 350 (1205)
Q Consensus 277 ~~~~~~~~~~~~s~ilvTTr~~~v~~~~---~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~ 350 (1205)
. +.....-|||..|...++..-+ . .-++.++++.=+.+.-.+.|+-++..-. ..-++ +.+++.+.
T Consensus 284 G-----FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~ 354 (406)
T COG1222 284 G-----FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTE 354 (406)
T ss_pred C-----CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcC
Confidence 0 2245678999999877655211 1 2246788884444555566666664322 22233 35666666
Q ss_pred CCh----HHHHHHHHHh
Q 000975 351 GLP----IAVSTIANAL 363 (1205)
Q Consensus 351 glP----Lai~~~~~~l 363 (1205)
|.- -||.+=|+++
T Consensus 355 g~sGAdlkaictEAGm~ 371 (406)
T COG1222 355 GFSGADLKAICTEAGMF 371 (406)
T ss_pred CCchHHHHHHHHHHhHH
Confidence 655 3444555555
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0019 Score=71.58 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCcEEEEEEec---CCCCHHHHHHHHHHHhC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVVDAEVT---HTPDWKEICGRIADQLG 229 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~ 229 (1205)
...+.++|+.|+||||+|+.++...--.. |.| ..|+.-. +...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~------------- 87 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIK------------- 87 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCC-------------
Confidence 45688999999999999999998764211 122 2222111 1112
Q ss_pred CCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhH-Hh
Q 000975 230 LEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV-LR 302 (1205)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v-~~ 302 (1205)
.+.++.+.+.+. .+++-++|+|+++... ..+.+...+-. ...++.+|+||.+... ..
T Consensus 88 ---------id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 88 ---------VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLLP 151 (328)
T ss_pred ---------HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCcH
Confidence 222333333332 1344455789998763 23333222211 1346677777766543 22
Q ss_pred hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 303 INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 303 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
.-.+....+.+.+++.+++.+.+.+..+. ..++.+..++..++|.|..+..+
T Consensus 152 TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 152 TIKSRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 12444568999999999999999876421 11234567889999999755443
No 163
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=0.00013 Score=69.85 Aligned_cols=69 Identities=22% Similarity=0.217 Sum_probs=43.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC-e
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK-R 254 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~ 254 (1205)
|.|+|++|+||||+|+.+++... . .++.++.+.-.+. ...........+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~---~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--F---PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--S---EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--c---ccccccccccccc----------------cccccccccccccccccccccc
Confidence 57999999999999999999974 1 2345544332100 00122333444444444344 8
Q ss_pred EEEEEcccccc
Q 000975 255 VLVILDDIWTQ 265 (1205)
Q Consensus 255 ~LlVlDdv~~~ 265 (1205)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999875
No 164
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.48 E-value=6.8e-05 Score=78.88 Aligned_cols=178 Identities=21% Similarity=0.237 Sum_probs=99.3
Q ss_pred CCCcceEEEeecCCCCCCCC---hhhhhCCCceeEEEeeCCCCCC--------------cccccCCCcCCcEEEccCCcC
Q 000975 532 QCTRLKLFLLFTEDSSLQIP---NQFFDGMTELLVLHLTGIHFPS--------------LPLSLGSLINLRTLSFDCCHL 594 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~---~~~~~~l~~Lr~L~Ls~~~i~~--------------lp~~i~~L~~Lr~L~L~~~~l 594 (1205)
.+++|++++|++|-+.-.-+ ..+++++..|+.|.|.+|.+.. ....+.+-+.||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 56677777777776542222 2345666777777777776541 122245556677777777776
Q ss_pred CC-C-----ccccccccCcEEEcccCCCC-----ccchhccCCCccCEEeccCCCCCCcc---ChhhhcCCCCCCEEEcc
Q 000975 595 ED-V-----ARVGDLAKLEILSFRNSHIE-----QLPEQIGNLTRLKLLDLSNCSKLKVI---KPEVISRLSRLNELYMG 660 (1205)
Q Consensus 595 ~~-~-----~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~---~~~~l~~L~~L~~L~l~ 660 (1205)
.+ + ..|...+.|+.+.+..|.|. -+-..+..+++|+.|||.+|..-..- -...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 54 2 34555567777777776554 12344566777777777776532211 01225566677777777
Q ss_pred CCcCccccCCCccchHhh-ccCCCCcEEEEecch-----------hhhccccccccccccceE
Q 000975 661 NSFTRKVEGQSNASVVEL-KQLSSLTILDMHIPD-----------AQLLLEDLISLDLERYRI 711 (1205)
Q Consensus 661 ~~~~~~~~~~~~~~l~~L-~~L~~L~~L~l~~~~-----------~~~~~~~L~~l~L~~~~i 711 (1205)
+|.+.+- | ..+....+ ...++|+.+.+.... .....+.|..|+|++|.+
T Consensus 250 dcll~~~-G-a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENE-G-AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccc-c-HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7755421 0 01112222 224566666665221 122356777888888875
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.48 E-value=0.0016 Score=77.56 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=97.1
Q ss_pred ccCCccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+.+++|-+..++++.+.+. . ...+-+.++|++|+|||++|+.++.... ..| +.++.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~-----~~i~~- 121 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSISG- 121 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCe-----eeccH-
Confidence 34456677787776655554332 1 1234588999999999999999998754 222 22221
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cccccCCCCCCCccc
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEKQS 282 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~~~~~~~~~~~~~~ 282 (1205)
.++.... .+ ........+.+......+.+|+|||++.... +......+...+ +.
T Consensus 122 ---~~~~~~~---~g-------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~-d~ 187 (495)
T TIGR01241 122 ---SDFVEMF---VG-------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM-DG 187 (495)
T ss_pred ---HHHHHHH---hc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh-cc
Confidence 1111110 01 1112233344444445778999999976411 000000000000 00
Q ss_pred cCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 283 VDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+....+..||.||.......-++ .-...++++..+.++-.++|+.++......++ .....+++.+.|.-
T Consensus 188 ~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 188 FGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred ccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 11234556666776654221111 22457889999999999999888743222111 12347788887743
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0025 Score=70.16 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=110.8
Q ss_pred ccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc--------------CCCcEEEEEEecCCC
Q 000975 151 YVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKE--------------DLFDVVVDAEVTHTP 215 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~~~~~ 215 (1205)
+..++|.+..++.+...+..++ .+...++|+.|+||+++|..++...--. .|.| ..|+.-....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~ 81 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQH 81 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccc
Confidence 3467899999999999987665 4789999999999999999998875311 1222 2333211000
Q ss_pred CHHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHHHc----CCeEEEEEccccccc--ccccccCCCCCCCccccCCCCC
Q 000975 216 DWKEICGRIADQLGLEIV-RPDSLVEKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGR 288 (1205)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~ 288 (1205)
+-..+-..-++..+.... ...-..+.++.+.+.+.. +++-++|+|+++... ...++...+-. |. .
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE------Pp--~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE------PG--N 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC------CC--C
Confidence 000000111112221000 000123344555555542 466789999987763 23333222211 12 3
Q ss_pred eEEEEecCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 289 WTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 289 s~ilvTTr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
+.+|++|.+. .+...-......+++.++++++..+.+.+....+.. ......++..++|.|..+..
T Consensus 154 ~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 154 GTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHH
Confidence 3555555443 333322455678999999999999999987532111 11135789999999965544
No 167
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.47 E-value=0.0033 Score=74.01 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=95.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
...+.|+|++|+|||+||+.+++....+..-..++|++... +...+...+... . ...+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~-----~----~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN-----T----MEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC-----c----HHHHHHHHh--
Confidence 35689999999999999999999976432233566775543 233333333211 1 223344444
Q ss_pred CeEEEEEcccccccc---c-ccccCCCCCCCccccCCCCCeEEEEecCchh--H-------HhhcCCCCceEEccCCChH
Q 000975 253 KRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQH--V-------LRINMSNPRIFSISTLADG 319 (1205)
Q Consensus 253 k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~--v-------~~~~~~~~~~~~l~~L~~~ 319 (1205)
+.-+|||||++.... + +.+...+.. + ...|..||+||.... + .. .+.....+++++.+.+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~-----l-~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNA-----L-HEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLE 283 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHH-----H-HHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHH
Confidence 344899999976421 1 112111100 0 123445777776542 1 11 2344468999999999
Q ss_pred hHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 320 EAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 320 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
+-..++++.+... ...-.+++...|++.+.|..-.+
T Consensus 284 ~r~~il~~~~~~~-~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 284 TRIAILKKKAEEE-GIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHcCcCCCHHHH
Confidence 9999999988432 12223567888999888876543
No 168
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.00083 Score=78.00 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=94.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
...+.|+|.+|+|||+||+.+++.......-..++|++.. ++...+...+... . ...+.+.+. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~-----~----~~~f~~~~~-~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKYR-K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc-----c----HHHHHHHHH-h
Confidence 3458999999999999999999987643222356777643 4455555544311 1 122333333 2
Q ss_pred CeEEEEEcccccccc---c-ccccCCCCCCCccccCCCCCeEEEEecC-chhHH----h---hcCCCCceEEccCCChHh
Q 000975 253 KRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASR-DQHVL----R---INMSNPRIFSISTLADGE 320 (1205)
Q Consensus 253 k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTTr-~~~v~----~---~~~~~~~~~~l~~L~~~e 320 (1205)
+.-+||+||++.... + +.+...+.. + ...|..||+||. .+.-. . ..+....++++++.+.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~-----l-~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNE-----L-HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHH-----H-HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 455899999985411 1 112111100 0 123446888875 33211 1 012334588999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 321 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
-..++++.+.... -.-.+++...|++.+.|.--.
T Consensus 268 r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 268 RKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHH
Confidence 9999999884321 112356778888888875433
No 169
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00017 Score=69.93 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=31.4
Q ss_pred hhCCCceeEEEeeCCCCCCcccccCC-CcCCcEEEccCCcCCC---CccccccccCcEEEcccCCCCc
Q 000975 555 FDGMTELLVLHLTGIHFPSLPLSLGS-LINLRTLSFDCCHLED---VARVGDLAKLEILSFRNSHIEQ 618 (1205)
Q Consensus 555 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~ 618 (1205)
|..++.|..|.|.+|.|+.+.+.+.. +++|+.|.|.+|+|.. ...+..++.|++|.+-+|.++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 34555555555555555555333332 3345555555555443 3344444555555555554443
No 170
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.0011 Score=77.74 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.|+|..|+|||.|++.+++.......-..++|++. .++...+...+... ....+.+.+. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--c
Confidence 45899999999999999999998753222235677754 33333443332210 1223334443 3
Q ss_pred eEEEEEcccccccc---ccc-ccCCCCCCCccccCCCCCeEEEEecCchh---------HHhhcCCCCceEEccCCChHh
Q 000975 254 RVLVILDDIWTQIN---LDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQH---------VLRINMSNPRIFSISTLADGE 320 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~---~~~-~~~~~~~~~~~~~~~~~~s~ilvTTr~~~---------v~~~~~~~~~~~~l~~L~~~e 320 (1205)
-=+|||||++.... |+. +...+.. + ...+..|||||+... +.. .+...-+++++..+.+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~-----l-~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNT-----L-HNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELET 450 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHH-----H-HhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHHH
Confidence 35789999976521 221 2111110 1 123456888887632 112 24445689999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 321 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
-..++++++.... -.--+++..-|++++.+..-.
T Consensus 451 R~aIL~kka~~r~-l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 451 RIAILRKKAVQEQ-LNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHHhccCCHHH
Confidence 9999999884321 122356777787777765433
No 171
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00022 Score=69.28 Aligned_cols=103 Identities=22% Similarity=0.189 Sum_probs=83.2
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc--cccCCCcCCcEEE
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP--LSLGSLINLRTLS 588 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~Lr~L~ 588 (1205)
.+....+++++|++..++....+++|.+|.+.+|.+. .|.+.+-..+++|.+|.|.+|+|..+- ..+..|+.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3456678899999988888779999999999999997 777777677889999999999998663 3478899999999
Q ss_pred ccCCcCCC-C----ccccccccCcEEEcccC
Q 000975 589 FDCCHLED-V----ARVGDLAKLEILSFRNS 614 (1205)
Q Consensus 589 L~~~~l~~-~----~~i~~L~~L~~L~L~~~ 614 (1205)
+-+|.+.. . -.+.++++|++||..+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99998765 2 35666777777776653
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.42 E-value=0.0017 Score=78.31 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=95.4
Q ss_pred CccccCCChHHHHHHHH---HhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH
Q 000975 150 GYVHFPSRNPVFQKMME---SLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (1205)
.+.++.|.++.++++.+ .+... ..+-|.++|++|+|||++|+.++.... .. |+.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----
Confidence 34456676665555444 33321 134588999999999999999998754 22 222221
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cccccCCCCCCCccccCC
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEKQSVDN 285 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~~~~~~~~~~~~~~~~~ 285 (1205)
.++.... .+ ........+.+......+++|++||++.... .+.....+...+ +-+..
T Consensus 250 s~f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~-dg~~~ 318 (638)
T CHL00176 250 SEFVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM-DGFKG 318 (638)
T ss_pred HHHHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh-ccccC
Confidence 1111100 01 0112233344444446889999999975410 001000000000 00112
Q ss_pred CCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC
Q 000975 286 QGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG 351 (1205)
Q Consensus 286 ~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g 351 (1205)
..+..||.||........++ .-...+.++..+.++-.++++.++......+ ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 34566777776655432111 1236788999999999999998885422111 2334677787777
No 173
>PRK06620 hypothetical protein; Validated
Probab=97.42 E-value=0.00052 Score=71.14 Aligned_cols=134 Identities=19% Similarity=0.029 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
+.+.|+|++|+|||+|++.+++... . .++. .... . . +... .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~-~-------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N-E-------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c-h-------hHHh--c
Confidence 5689999999999999998776543 1 1221 0000 0 0 0111 2
Q ss_pred eEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHH------hhcCCCCceEEccCCChHhHHHHHHH
Q 000975 254 RVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL------RINMSNPRIFSISTLADGEAKSLFEK 327 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (1205)
.-++++||++...+ ..+...+. .+ ...|..||+|++..... ...+...-+++++++++++-..++++
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N-----~~-~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFN-----II-NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHH-----HH-HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 34788899974321 11111100 00 13456888888754321 01233445899999999999999988
Q ss_pred HhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 328 IVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
.+... .-.-.+++..-|++++.|---
T Consensus 159 ~~~~~-~l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 159 HFSIS-SVTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred HHHHc-CCCCCHHHHHHHHHHccCCHH
Confidence 87421 112235677778887777543
No 174
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=4.4e-05 Score=77.98 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=49.1
Q ss_pred hCCCceeEEEeeCCCCCC---cccccCCCcCCcEEEccCCcCCC-Cccc-cccccCcEEEcccCCCC--ccchhccCCCc
Q 000975 556 DGMTELLVLHLTGIHFPS---LPLSLGSLINLRTLSFDCCHLED-VARV-GDLAKLEILSFRNSHIE--QLPEQIGNLTR 628 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~Lr~L~L~~~~l~~-~~~i-~~L~~L~~L~L~~~~l~--~lp~~i~~L~~ 628 (1205)
..+..++.|||.+|.|+. +-..+.+|++|++|+|+.|.+.. +... -.+.+|++|-|.|+.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 445666677777776652 33335567777777777776655 4444 35566777777666443 44444556666
Q ss_pred cCEEeccCC
Q 000975 629 LKLLDLSNC 637 (1205)
Q Consensus 629 L~~L~L~~~ 637 (1205)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 666666654
No 175
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.36 E-value=0.0018 Score=61.55 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=86.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhHHHHHHh
Q 000975 2 AEELGSAAVSGIASKVVELLFDPIREEISYVCKYQSNVKELKNVGERVEQAVKHADRQGDDIFSDVQEWLTKFDEWTKRV 81 (1205)
Q Consensus 2 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~~~ 81 (1205)
||.++|||++++++.+...+. +..+....++.-.++|..+++.|...+++.+..+...+..-+.-++++.+... +
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~----~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~-~ 77 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVI----DASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLE-K 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHH-H
Confidence 677888877777777775544 55555667899999999999999999999987655555555788999999999 9
Q ss_pred hhhhhhcccccccccccccccccccccchhchhhHHHHHHHHHHHHHHhc
Q 000975 82 GNAVVEDEGEDEANKKRCTFKDLCSKMMTRYRLSKEAAKAAREGNIILQR 131 (1205)
Q Consensus 82 ~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 131 (1205)
++++++.+.+-. ..++..+++.+++|+++.+.+....+.
T Consensus 78 g~~LV~k~sk~~-----------r~n~~kk~~y~~Ki~~le~~l~~f~~v 116 (147)
T PF05659_consen 78 GKELVEKCSKVR-----------RWNLYKKPRYARKIEELEESLRRFIQV 116 (147)
T ss_pred HHHHHHHhcccc-----------HHHHHhhHhHHHHHHHHHHHHHHHhcc
Confidence 999887655211 123445677889999999988877653
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00078 Score=80.35 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=45.1
Q ss_pred cccccCCccccCCChHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 144 ERFSVRGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 144 ~~~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+...|....+++|.++.++++..++.. ...+++.|+|++|+||||+++.++....
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345677888899999999999988863 2345799999999999999999998754
No 177
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.35 E-value=0.0032 Score=73.30 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=93.5
Q ss_pred CccccCCChHHHHHHHHHhc-------c---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 150 GYVHFPSRNPVFQKMMESLR-------D---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------~---~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
.+.++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++... ..| +-++.+.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------ 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------
Confidence 34556677666655544211 0 2245688999999999999999999875 222 2222211
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc-ccccCC-----CCCCCccccC-CCCCeEEE
Q 000975 220 ICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-DDIGIP-----FWDGEKQSVD-NQGRWTLL 292 (1205)
Q Consensus 220 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-~~~~~~-----~~~~~~~~~~-~~~~s~il 292 (1205)
++. ...+ ..+.....+.+......+++|++|+++....- ..-... ....+...+. ...+--||
T Consensus 295 l~~--------~~vG--ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 LFG--------GIVG--ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred hcc--------cccC--hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 110 0011 12223344444444458899999999853110 000000 0000000011 12333456
Q ss_pred EecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 293 LASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 293 vTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.||.+.....-++ .-...+.++.-+.++-.++|+.+............-...+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 6776554221111 234578888889999999999887432211100111346666666654
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.34 E-value=0.0069 Score=62.19 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=42.0
Q ss_pred ccCCccccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED 201 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~ 201 (1205)
.+.....++|-+.+++.+++-.. .....-|.+||..|+|||++++.+.+.+..++
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34556678888888887776443 34455678999999999999999999887543
No 179
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0083 Score=61.89 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=100.4
Q ss_pred ccCCccccCCChHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
.|..+.+|+|.++.++++-=.+. .....-|.++|++|.||||||.-+++...+. +-++......-.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn------~k~tsGp~leK~--- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN------LKITSGPALEKP--- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC------eEecccccccCh---
Confidence 36677899999998888766664 2345568999999999999999999987643 111111111100
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCC--CCCC---CccccCCCC
Q 000975 222 GRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---------LDDIGIP--FWDG---EKQSVDNQG 287 (1205)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~~~~~--~~~~---~~~~~~~~~ 287 (1205)
.+ ...+...++ +.=++++|++..... .+++..- ...+ -.-.++-.+
T Consensus 92 -----------------gD-laaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 92 -----------------GD-LAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -----------------hh-HHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 11 111111121 333455666544310 1111000 0000 000011122
Q ss_pred CeEEEEecCchhHHhh-cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 288 RWTLLLASRDQHVLRI-NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 288 ~s~ilvTTr~~~v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
-+-|=.|||.-.+..- .-.-.-+.+++-.+++|-.+...+.+..-. -+-.++.+.+|+++..|-|--
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHH
Confidence 3345568887655431 111234778999999999999999884311 122346788999999999953
No 180
>PHA00729 NTP-binding motif containing protein
Probab=97.28 E-value=0.0025 Score=65.14 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 163 ~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555556679999999999999999999875
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.25 E-value=5e-05 Score=68.49 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=76.3
Q ss_pred ceEEEeecCCCCCCCChh--hhhCCCceeEEEeeCCCCCCcccccCCC-cCCcEEEccCCcCCC-CccccccccCcEEEc
Q 000975 536 LKLFLLFTEDSSLQIPNQ--FFDGMTELLVLHLTGIHFPSLPLSLGSL-INLRTLSFDCCHLED-VARVGDLAKLEILSF 611 (1205)
Q Consensus 536 Lr~L~l~~n~~~~~~~~~--~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L-~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L 611 (1205)
+..++|+++.+. .++.. ...+..+|...+|++|.++++|..|... +.+.+|+|++|.|++ |..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 444566665442 23322 2356667888888888888888776544 478888888888887 777888888888888
Q ss_pred ccCCCCccchhccCCCccCEEeccCCCCCCccChh
Q 000975 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPE 646 (1205)
Q Consensus 612 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~ 646 (1205)
+.|.+...|..|..|.+|-.|+..+|. ...+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888888888777778888888777754 4555544
No 182
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0025 Score=74.15 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=93.9
Q ss_pred ccCCChHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
+..|-++.+++|++.|. .-+.+++++||++|+|||+|++.++.... +.| +-++++..-+..++...=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhcccccc
Confidence 35688899999999885 23457999999999999999999999876 555 34455554444444221111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEccccccc------ccccccCCCCCCCc-----cccC-CCCCeEEE
Q 000975 227 QLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQI------NLDDIGIPFWDGEK-----QSVD-NQGRWTLL 292 (1205)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~------~~~~~~~~~~~~~~-----~~~~-~~~~s~il 292 (1205)
.+|. - -..+.+.+++ .++-+++||.++... .-.++...+-.+.. .|+. .-.=|.|+
T Consensus 399 YIGa------m----PGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 399 YIGA------M----PGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccc------C----ChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 1111 1 1123333332 477899999998641 11111111110000 1111 11234555
Q ss_pred EecCchhHH---hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 293 LASRDQHVL---RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 293 vTTr~~~v~---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
+.+...... .--+....++++.+.+++|-.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 544333222 2125567899999999999888887776
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.00099 Score=64.85 Aligned_cols=90 Identities=21% Similarity=0.098 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.|+|++|+||||+|+.++...... ...+++++.+........... ......... ..........+.+.....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKA-SGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCC-CCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999987632 234666666554332222111 111111111 1133344445555554334
Q ss_pred eEEEEEcccccccc
Q 000975 254 RVLVILDDIWTQIN 267 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~ 267 (1205)
..+|++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 48999999988744
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0081 Score=67.14 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=80.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
....+.|||..|.|||.|++++.+.......-..+++++. +.....++..+.. ...+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 3678999999999999999999999874333234555533 2333333333211 1233344433
Q ss_pred CCeEEEEEcccccccc---ccc-ccCCCCCCCccccCCCCCeEEEEecCchhHH---------hhcCCCCceEEccCCCh
Q 000975 252 KKRVLVILDDIWTQIN---LDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQHVL---------RINMSNPRIFSISTLAD 318 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~~~---~~~-~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~---------~~~~~~~~~~~l~~L~~ 318 (1205)
.-=++++||++.... |+. +...|.. + ...|-.||+|++...-. . .+...-++++.+.+.
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~-----l-~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNA-----L-LENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDD 246 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHH-----H-HhcCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCH
Confidence 123789999987422 221 2222211 1 12333899998654322 2 234456899999999
Q ss_pred HhHHHHHHHHh
Q 000975 319 GEAKSLFEKIV 329 (1205)
Q Consensus 319 ~e~~~Lf~~~~ 329 (1205)
+.....+.+++
T Consensus 247 e~r~aiL~kka 257 (408)
T COG0593 247 ETRLAILRKKA 257 (408)
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 185
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.003 Score=63.67 Aligned_cols=175 Identities=16% Similarity=0.189 Sum_probs=101.4
Q ss_pred ccccCCChHHHHH---HHHHhccC------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 151 YVHFPSRNPVFQK---MMESLRDS------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 151 ~~~~~gr~~~~~~---l~~~l~~~------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
..+++|.++.+.+ |++.|.+. ..+-|..+|++|+|||-+|+++++..++ .| +.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka----t--- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA----T--- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech----H---
Confidence 4556787766543 45555532 3678999999999999999999998763 22 11111 1
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc----------c----cccccCCCCCCCccccCCCC
Q 000975 222 GRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI----------N----LDDIGIPFWDGEKQSVDNQG 287 (1205)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~----~~~~~~~~~~~~~~~~~~~~ 287 (1205)
.-|.+..| +....+.++.+.-.+.-++.+++|.++-.. + ..++...+. -+..+.
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-----gi~ene 253 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-----GIKENE 253 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc-----CcccCC
Confidence 12222222 234445566665555689999999886431 1 112111110 112456
Q ss_pred CeEEEEecCchhHHhhcCC--CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 288 RWTLLLASRDQHVLRINMS--NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 288 ~s~ilvTTr~~~v~~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
|-..|-.|..++....+.. -...++..--+++|-.+++...+..-..+-+ .-.+.++.+.+|..
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 7667777777765532222 2346777777889999999988843221111 11345666666643
No 186
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.056 Score=56.00 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=84.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
-+-|.++|++|+||+-||++|+.... . -|++||.. ++.... +| ..+..+..+.+.-++.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----DLvSKW---mG-------ESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----DLVSKW---MG-------ESEKLVKNLFEMAREN 224 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----HHHHHH---hc-------cHHHHHHHHHHHHHhc
Confidence 45689999999999999999998764 2 24455543 222222 22 3345566677666678
Q ss_pred CeEEEEEcccccc---------cccccccCCCCCCCccccCCCCCeEEEEecCchhHHhhcCCC--CceEEccCCChHhH
Q 000975 253 KRVLVILDDIWTQ---------INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSN--PRIFSISTLADGEA 321 (1205)
Q Consensus 253 k~~LlVlDdv~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~~~--~~~~~l~~L~~~e~ 321 (1205)
|+-.|++|+++.. +.-..+...|...+.-.=.+..|.-|+=.|..+-+...++.. .+.+- -+|.+..|
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIY-IPLPe~~A 303 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIY-IPLPEAHA 303 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhccee-ccCCcHHH
Confidence 9999999999753 111111111111111010134455566677777665422222 12222 25666666
Q ss_pred HH-HHHHHhCCCCCCCchHHHHHHHHHhcCCC
Q 000975 322 KS-LFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (1205)
Q Consensus 322 ~~-Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 352 (1205)
.. .|+-++|+... .-.++-.++++++..|.
T Consensus 304 R~~MF~lhlG~tp~-~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 304 RARMFKLHLGDTPH-VLTEQDFKELARKTEGY 334 (439)
T ss_pred hhhhheeccCCCcc-ccchhhHHHHHhhcCCC
Confidence 65 45555665322 22223345566666554
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.22 E-value=0.017 Score=64.24 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=120.8
Q ss_pred ChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHH-HHHHHHHhhcCCCcEEEEEEecCCC---CHHHHHHHHHHHhCCCC
Q 000975 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLV-KVVARQVVKEDLFDVVVDAEVTHTP---DWKEICGRIADQLGLEI 232 (1205)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~~~l~~~~ 232 (1205)
|.+.+++|-.||.+..-..|.|.||-|+||+.|+ .++..+.+ .+..+++.+-. +-..+++.++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888889999999999999999 77766543 26777776432 23445555555554311
Q ss_pred -----------------------CC-CCCHHHHHHHHHH----HHHc-------------------------CCeEEEEE
Q 000975 233 -----------------------VR-PDSLVEKANQLRQ----ALKK-------------------------KKRVLVIL 259 (1205)
Q Consensus 233 -----------------------~~-~~~~~~~~~~l~~----~l~~-------------------------~k~~LlVl 259 (1205)
.+ .++.+.....+.+ .|++ .++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 11 1122222222111 1110 13678999
Q ss_pred ccccccc-----------ccccccCCCCCCCccccCCCCCeEEEEecCchhHHhh---cCC--CCceEEccCCChHhHHH
Q 000975 260 DDIWTQI-----------NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI---NMS--NPRIFSISTLADGEAKS 323 (1205)
Q Consensus 260 Ddv~~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~---~~~--~~~~~~l~~L~~~e~~~ 323 (1205)
||..... +|.+. +- ..+--.||++|-+...... +++ ..+.+.+.-.+++.|.+
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv--------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV--------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH--------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 9986542 23332 11 2344578888877654420 232 34688999999999999
Q ss_pred HHHHHhCCCCCC-------------------CchHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 000975 324 LFEKIVGDSAKE-------------------SDCRAIGVEIVGKCGGLPIAVSTIANALKGQ 366 (1205)
Q Consensus 324 Lf~~~~~~~~~~-------------------~~~~~~~~~i~~~~~glPLai~~~~~~l~~~ 366 (1205)
+...+....... .....-....++.+||==.=+..+++.++..
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 999988442110 1123334577888888888888888888765
No 188
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.0023 Score=74.05 Aligned_cols=152 Identities=12% Similarity=0.114 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.|+|+.|+|||+||+.+++..... ...+++++. .++...+...+... ....+.+.+. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~--~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR--N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc--c
Confidence 568899999999999999999987632 234566653 23334444444211 1122333332 4
Q ss_pred eEEEEEccccccccc----ccccCCCCCCCccccCCCCCeEEEEecCchh---------HHhhcCCCCceEEccCCChHh
Q 000975 254 RVLVILDDIWTQINL----DDIGIPFWDGEKQSVDNQGRWTLLLASRDQH---------VLRINMSNPRIFSISTLADGE 320 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~~----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~---------v~~~~~~~~~~~~l~~L~~~e 320 (1205)
.-+|++||+...... +.+...+.. + ...|..||+||.... +.. .+.....+++.+++.++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~-----l-~~~~k~IIlts~~~p~~l~~l~~rL~S-R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNS-----L-HTEGKLIVISSTCAPQDLKAMEERLIS-RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHH-----H-HHCCCcEEEecCCCHHHHhhhHHHHHh-hhcCCeEEecCCCCHHH
Confidence 458899998765321 112111110 0 113456888885431 111 23344688999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC
Q 000975 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (1205)
Q Consensus 321 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 352 (1205)
-..++++++.... ..-.+++..-|++.+.|.
T Consensus 276 r~~iL~~k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 276 LRSFLERKAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 9999999884321 112245566676666643
No 189
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0051 Score=71.22 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=65.2
Q ss_pred cccCCChHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.+..|.++.+++|++.+. ..+.++++.+|++|+|||.+|+.++.-.. +.| +-++++.-.+..+|-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccce
Confidence 345688899999999885 34568999999999999999999999875 444 3456666555555422111
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEcccccc
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQ 265 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 265 (1205)
..+|. .-.++.+.|++ ..+-|+.||+|+..
T Consensus 486 TYVGA----------MPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 486 TYVGA----------MPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eeecc----------CChHHHHHHHhhCCCCceEEeehhhhh
Confidence 11110 11234444543 36678999999764
No 190
>PRK08116 hypothetical protein; Validated
Probab=97.19 E-value=0.00098 Score=71.79 Aligned_cols=75 Identities=25% Similarity=0.323 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
..+.++|.+|+|||.||..+++....+ ...+++++ ..+++..+...+..... .....+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK------EDENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc------ccHHHHHHHhcC-C
Confidence 458899999999999999999998643 34566765 34455555544432111 112234444542 2
Q ss_pred eEEEEEccccc
Q 000975 254 RVLVILDDIWT 264 (1205)
Q Consensus 254 ~~LlVlDdv~~ 264 (1205)
=||||||+..
T Consensus 180 -dlLviDDlg~ 189 (268)
T PRK08116 180 -DLLILDDLGA 189 (268)
T ss_pred -CEEEEecccC
Confidence 3899999943
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0034 Score=69.07 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=68.9
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE-EEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCC
Q 000975 161 FQKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHT-PDWKEICGRIADQLGLEIVRPDS 237 (1205)
Q Consensus 161 ~~~l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~ 237 (1205)
..++++.+.. .....+.|+|.+|+|||||++.+++.... .+-+. ++|+.+.+. .++.++++.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 4457777762 23345789999999999999999998754 23344 477777765 46788888888877665432211
Q ss_pred HH-----HHHHHHHHHH-HcCCeEEEEEcccccc
Q 000975 238 LV-----EKANQLRQAL-KKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 238 ~~-----~~~~~l~~~l-~~~k~~LlVlDdv~~~ 265 (1205)
.. ..+..+.+++ .++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 1122333333 3479999999998654
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0084 Score=66.81 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=93.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
....+.+.|++|+|||+||..++.. ..|..+=-++...-... ++......+.+.+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~-------------------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGL-------------------SESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCc-------------------cHHHHHHHHHHHHHH
Confidence 3456789999999999999999887 44655443332211111 222333333333321
Q ss_pred ---CCeEEEEEcccccccccccccCCCCCCCcccc--------CCCCCeEEEEecCchhHHhhcCCC----CceEEccCC
Q 000975 252 ---KKRVLVILDDIWTQINLDDIGIPFWDGEKQSV--------DNQGRWTLLLASRDQHVLRINMSN----PRIFSISTL 316 (1205)
Q Consensus 252 ---~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~ilvTTr~~~v~~~~~~~----~~~~~l~~L 316 (1205)
..=-.||+||+....+|-.+++.|.+.+.+.+ |.++.--|+-||....+.. .|+- ...|+++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 35578999999999999999888776544432 3344444556777777765 3443 357899999
Q ss_pred Ch-HhHHHHHHHHhCCCCCCCchHHHHHHHHHhc
Q 000975 317 AD-GEAKSLFEKIVGDSAKESDCRAIGVEIVGKC 349 (1205)
Q Consensus 317 ~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~ 349 (1205)
+. ++..+.+...- .-.+.+.+.++.+...+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 87 77777776642 112333445556666665
No 193
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.0033 Score=71.95 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCCCCC
Q 000975 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVRP 235 (1205)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~ 235 (1205)
|.....++++.+..... ++.|+|+-++||||+++.+...... . .+++...+.. +..++ .+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~--~---~iy~~~~d~~~~~~~l-~d~----------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE--E---IIYINFDDLRLDRIEL-LDL----------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc--c---eEEEEecchhcchhhH-HHH-----------
Confidence 44455666666543333 9999999999999999666665432 1 5555543322 11111 111
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHH-----hhcCCCCce
Q 000975 236 DSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-----RINMSNPRI 310 (1205)
Q Consensus 236 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-----~~~~~~~~~ 310 (1205)
.....+.-. .++..|+||.|+....|+.....+.+ .+.. +|++|+-+.... ..-.+....
T Consensus 84 ------~~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 84 ------LRAYIELKE-REKSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred ------HHHHHHhhc-cCCceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 111111111 26789999999999999887665554 3444 888888776543 212455678
Q ss_pred EEccCCChHhHHHH
Q 000975 311 FSISTLADGEAKSL 324 (1205)
Q Consensus 311 ~~l~~L~~~e~~~L 324 (1205)
+++.|||..|-..+
T Consensus 149 ~~l~PlSF~Efl~~ 162 (398)
T COG1373 149 LELYPLSFREFLKL 162 (398)
T ss_pred EEECCCCHHHHHhh
Confidence 99999999998764
No 194
>PRK10536 hypothetical protein; Provisional
Probab=97.15 E-value=0.0014 Score=67.99 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=42.9
Q ss_pred CccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEE
Q 000975 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVD 208 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 208 (1205)
+..++.+|+.....++.++.+. ..|.+.|++|+|||+||.+++.+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4455678888888888888753 58999999999999999999986432344554443
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.14 E-value=0.00098 Score=65.90 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=55.6
Q ss_pred cccccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 144 ERFSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 144 ~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
+...|....++||-++.++.+.-...+.+.+-+.|.||+|+||||-+..+++..--..+-+.+.-.++|..-.+.-
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDv 94 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDV 94 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHH
Confidence 3445666778899999888887777788888999999999999999988888764222334555556665544433
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=97.14 E-value=0.00024 Score=70.55 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCcEEEE
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVD 208 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 208 (1205)
+.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987643 55777776
No 197
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.11 E-value=0.031 Score=61.41 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 156 SRNPVFQKMMESLRD----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 156 gr~~~~~~l~~~l~~----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
+|........+++.. ...+-+.++|..|+|||.||..+++.... ..+ .+.+++++ +++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555542 13456899999999999999999999863 223 34566543 4555554443211
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cccc
Q 000975 232 IVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLD 269 (1205)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~ 269 (1205)
+ .....+.+. +-=||||||+... ..|.
T Consensus 207 -----~----~~~~l~~l~--~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 207 -----S----VKEKIDAVK--EAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred -----c----HHHHHHHhc--CCCEEEEecCCCccccHHH
Confidence 1 122333343 5668999998644 3454
No 198
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.06 E-value=0.00063 Score=68.89 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=41.1
Q ss_pred CCcceEEEeecCCCCCCCC---hhhhhCCCceeEEEeeCCCCC----Cc-------ccccCCCcCCcEEEccCCcCCC--
Q 000975 533 CTRLKLFLLFTEDSSLQIP---NQFFDGMTELLVLHLTGIHFP----SL-------PLSLGSLINLRTLSFDCCHLED-- 596 (1205)
Q Consensus 533 ~~~Lr~L~l~~n~~~~~~~---~~~~~~l~~Lr~L~Ls~~~i~----~l-------p~~i~~L~~Lr~L~L~~~~l~~-- 596 (1205)
+..+..+++++|.+...-. ...+.+-++|++.+++.-... .+ ...+-+|++|+..+|+.|-+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4456666666665542211 122344556666666654221 12 2234455666666666655432
Q ss_pred C----ccccccccCcEEEcccCCCC
Q 000975 597 V----ARVGDLAKLEILSFRNSHIE 617 (1205)
Q Consensus 597 ~----~~i~~L~~L~~L~L~~~~l~ 617 (1205)
| ..|++-..|.+|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 2 23444455555555555443
No 199
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.05 E-value=0.0089 Score=75.15 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=37.2
Q ss_pred ccCCChHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 153 HFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|.+..++.+.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36688888888887664 12345799999999999999999999875
No 200
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0071 Score=67.61 Aligned_cols=147 Identities=13% Similarity=0.163 Sum_probs=85.1
Q ss_pred ccCC-ChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCcEEEEEE
Q 000975 153 HFPS-RNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVVDAE 210 (1205)
Q Consensus 153 ~~~g-r~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 210 (1205)
.++| .+..++.+...+..++ .....++|+.|+||||+|+.+++..--.. |.|..+...
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3445 6667777777776554 45678999999999999999988753211 222221111
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEcccccccc--cccccCCCCCCCccccC
Q 000975 211 VTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 211 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ 284 (1205)
.+.... .+.+..+.+.+. .+++-++|+|+++.... .+++...+-.
T Consensus 86 ~~~~i~----------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE------- 136 (329)
T PRK08058 86 DGQSIK----------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE------- 136 (329)
T ss_pred ccccCC----------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------
Confidence 111111 222333333332 13555789999876532 2333222221
Q ss_pred CCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHH
Q 000975 285 NQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKI 328 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (1205)
...++.+|++|.+.. +...-......+++.++++++..+.+.+.
T Consensus 137 Pp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 137 PSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 235566666665543 22212445678999999999998888653
No 201
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.04 E-value=0.005 Score=60.80 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCcEEEEEEecCC-
Q 000975 156 SRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVVVDAEVTHT- 214 (1205)
Q Consensus 156 gr~~~~~~l~~~l~~~~~-~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~- 214 (1205)
|.++..+.+.+.+..++. ..+.++|+.|+||+++|..+++..--. .|.| +.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 456677777777765554 568999999999999999999875321 1233 334433322
Q ss_pred --CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeE
Q 000975 215 --PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWT 290 (1205)
Q Consensus 215 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ 290 (1205)
..+.++. .+.+.+...... +++=++|+||++.. +...++...+-. ...+++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~~-----------------~~~KviiI~~ad~l~~~a~NaLLK~LEe-------pp~~~~ 134 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPSE-----------------GKYKVIIIDEADKLTEEAQNALLKTLEE-------PPENTY 134 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-TT-----------------SSSEEEEEETGGGS-HHHHHHHHHHHHS-------TTTTEE
T ss_pred chhhHHHHH-HHHHHHHHHHhc-----------------CCceEEEeehHhhhhHHHHHHHHHHhcC-------CCCCEE
Confidence 3333332 444444332211 35667899999886 233443322222 246788
Q ss_pred EEEecCchhH-HhhcCCCCceEEccCCC
Q 000975 291 LLLASRDQHV-LRINMSNPRIFSISTLA 317 (1205)
Q Consensus 291 ilvTTr~~~v-~~~~~~~~~~~~l~~L~ 317 (1205)
+|++|++..- ...-......+.+.++|
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 8888877652 22224455667776654
No 202
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.03 E-value=0.0027 Score=64.31 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE
Q 000975 156 SRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (1205)
Q Consensus 156 gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (1205)
.+.......++.+. ...+|.+.|++|+|||.||...+-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34455566667766 456899999999999999999997765568899888874
No 203
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.031 Score=61.25 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=100.5
Q ss_pred HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCcEEEEEEecCCCCHHH
Q 000975 160 VFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 160 ~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~ 219 (1205)
..+++.+.+..++ ...+.++|+.|+||+++|+.++...--. .|.|. .|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC-----
Confidence 3556666665444 4578899999999999999998765311 12222 22211100
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEE
Q 000975 220 ICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL 293 (1205)
Q Consensus 220 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv 293 (1205)
+..-..+.++.+.+.+. .+++=++|+|+++... ...++...+-. ...++.+|+
T Consensus 85 --------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL 143 (319)
T PRK06090 85 --------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNCLFLL 143 (319)
T ss_pred --------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCeEEEE
Confidence 00011222333333332 1355688999998763 23333222221 234556666
Q ss_pred ecCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHH
Q 000975 294 ASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWK 372 (1205)
Q Consensus 294 TTr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~ 372 (1205)
+|.+. .+...-.+....+.+.+++++++.+.+.+. |.. .+..+++.++|.|+.+.-+ +.......++
T Consensus 144 ~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~~--------~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~ 211 (319)
T PRK06090 144 VTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GIT--------VPAYALKLNMGSPLKTLAM---MKEGGLEKYH 211 (319)
T ss_pred EECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CCc--------hHHHHHHHcCCCHHHHHHH---hCCCcHHHHH
Confidence 55554 444323455678999999999999888654 211 1356789999999866543 3333333444
Q ss_pred HHHHHH
Q 000975 373 DAINWL 378 (1205)
Q Consensus 373 ~~l~~l 378 (1205)
+++..+
T Consensus 212 ~~~~~l 217 (319)
T PRK06090 212 KLERQL 217 (319)
T ss_pred HHHHHH
Confidence 444433
No 204
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.00 E-value=0.0019 Score=66.96 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (1205)
.++|+|..|+||||++..+..... ..|.++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 578999999999999999998866 77888887754
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.97 E-value=0.0046 Score=63.01 Aligned_cols=88 Identities=25% Similarity=0.228 Sum_probs=57.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVR---PDSLVEKANQLRQA 248 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 248 (1205)
+++|.++|+.|+||||.+.+++...+.+ -..+..++... .....+-++..++.++.+... ..+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999999888754 44567777653 345566778889998876432 21344444444444
Q ss_pred HHcCCeEEEEEccc
Q 000975 249 LKKKKRVLVILDDI 262 (1205)
Q Consensus 249 l~~~k~~LlVlDdv 262 (1205)
...++.=+|++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44333457788865
No 206
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.028 Score=61.77 Aligned_cols=173 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcC-----------------CCcEEEEEEecCCCCHHHH
Q 000975 159 PVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKED-----------------LFDVVVDAEVTHTPDWKEI 220 (1205)
Q Consensus 159 ~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~~ 220 (1205)
...+.+...+..++ ...+.++|+.|+||+++|..++...--+. |.| +.|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 34566666666554 34688999999999999999987653211 111 12221100000
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc----CCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEEe
Q 000975 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
+.+. ...-..+.+..+.+.+.. +++-++|||+++.... -.++...+-. -..++.+|++
T Consensus 86 --------~~k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~~~fiL~ 149 (319)
T PRK08769 86 --------GDKL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------PSPGRYLWLI 149 (319)
T ss_pred --------cccc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------CCCCCeEEEE
Confidence 0000 000113333444443321 4566899999987632 2222221111 1345666666
Q ss_pred cCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 295 SRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 295 Tr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
|.+.. +...-.+....+.+.+++.+++.+.+.+. |. . ++.+..++..++|.|+.+..+
T Consensus 150 ~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~--~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 150 SAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV--S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC--C----hHHHHHHHHHcCCCHHHHHHH
Confidence 66543 33222445668899999999999888753 21 1 223567899999999865433
No 207
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0068 Score=75.27 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=87.8
Q ss_pred ccCCChHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
.++|.++.++.|++++. .....++.++|++|+||||+|+.++.... ..|.. ++++...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccchhc
Confidence 46788999999998876 12456899999999999999999998764 33322 334443333333211111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEcccccccc------cccccCCCCCCC----c-ccc--C-CCCCeE
Q 000975 227 QLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQIN------LDDIGIPFWDGE----K-QSV--D-NQGRWT 290 (1205)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~------~~~~~~~~~~~~----~-~~~--~-~~~~s~ 290 (1205)
..|. .+ . .+.+.+.. ...-+++||+++.... ...+...+-.+- . .++ + .-...-
T Consensus 398 ~~g~-~~-----G----~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 398 YIGS-MP-----G----KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred cCCC-CC-----c----HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 1111 11 1 12222222 1345789999976521 111111110000 0 000 0 113344
Q ss_pred EEEecCchhHHhhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 291 LLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 291 ilvTTr~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
+|.||....+...-.+...++++.+++++|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 455554443332224455688999999999888887765
No 208
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.93 E-value=0.0044 Score=77.94 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=61.1
Q ss_pred ccCCChHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+.+.+.. . ...++.++|++|+|||.+|+.++...- +.....+-++++...+. ..
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~~----~~ 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY--GGEQNLITINMSEFQEA----HT 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhhh----hh
Confidence 467999999998888741 1 234789999999999999999988753 22223333443332111 11
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+.+-+|.+.... .. +....+.+.+++....+|+||++...
T Consensus 641 ~~~l~g~~~gyv-g~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 641 VSRLKGSPPGYV-GY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hccccCCCCCcc-cc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 122222221110 11 11123445555567789999999765
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.0072 Score=75.51 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=61.1
Q ss_pred ccCCChHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||++|+.++.... ...+.++.+...+.. .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 356888888888877651 1 133678999999999999999998763 234666665532211 1
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+.+.+|...... . .+....+.+.++....-+++||+++..
T Consensus 526 ~~~lig~~~gyv-g-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYV-G-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCc-c-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 222222221110 1 111233445555456679999999875
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.03 Score=61.62 Aligned_cols=175 Identities=11% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc---E-----EEEEEecCCCCHHHHHHHHHHHhCC
Q 000975 160 VFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD---V-----VVDAEVTHTPDWKEICGRIADQLGL 230 (1205)
Q Consensus 160 ~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (1205)
..+.+.+.+..+. ...+.++|+.|+||+++|+.++...--..... | +-++..+..+|+..+ .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~- 80 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E- 80 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c-
Confidence 3455666665544 45778999999999999999998753211110 0 000001111111100 0
Q ss_pred CCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCch-hHHhh
Q 000975 231 EIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVLRI 303 (1205)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~-~v~~~ 303 (1205)
+..+..-..+.++.+.+.+. .+++=++|+|+++... ...++...+-. ...++.+|++|.+. .+...
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-------Pp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-------PRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhCchH
Confidence 00000012333444444443 2456678899998763 23333222211 23455666666554 33322
Q ss_pred cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 304 NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 304 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
-.+....+.+.++++++..+.+.+..+.. ...+...++.++|.|+.+
T Consensus 154 I~SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 154 IYSRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 24456789999999999999888765321 123556788999999633
No 211
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0068 Score=69.91 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=111.0
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.|..+.+++|.+.....|...+..++ .......|+-|+||||+|+.++...--.. | ....+.+.=...+.|.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 35566778999999999888887544 34567899999999999999998753211 0 0011111111112222
Q ss_pred HHhCC-----CCCCCCCHHHHHHHHHHHHHc----CCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 226 DQLGL-----EIVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 226 ~~l~~-----~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
..-.. +.... ...+.++.+.+.... ++-=+.|+|+|... ..|.++...+-. --..-+.|+.
T Consensus 84 ~g~~~DviEiDaASn-~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlA 155 (515)
T COG2812 84 EGSLIDVIEIDAASN-TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILA 155 (515)
T ss_pred cCCcccchhhhhhhc-cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEe
Confidence 11000 00011 223334444444431 34447799999875 345555444322 1233445555
Q ss_pred cCch-hHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 295 SRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 295 Tr~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
|++. .+...-......|.++.++.++-...+...+..+.... .+++...|++..+|..
T Consensus 156 TTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 156 TTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSL 214 (515)
T ss_pred cCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCCh
Confidence 5554 44433356678999999999999999998885433222 2455667777777754
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.025 Score=62.98 Aligned_cols=165 Identities=14% Similarity=0.149 Sum_probs=95.3
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCcEEEEEEecCCCCH
Q 000975 159 PVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKE--------------------DLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 159 ~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~ 217 (1205)
...+++.+.+..++ ...+.+.|+.|+||+++|..++...--. .|.|. .++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc---
Confidence 34566677766544 4678899999999999999988775211 12222 12210000
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEE
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTL 291 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~i 291 (1205)
...-..+.++.+.+.+. .+++=++|+|+++.... ..++...+-. -..++.+
T Consensus 85 ----------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~f 141 (334)
T PRK07993 85 ----------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWF 141 (334)
T ss_pred ----------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEE
Confidence 00011233344444433 24666889999987632 2333222211 2345566
Q ss_pred EEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 292 LLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 292 lvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
|++|.+.. +...-.+....+.+.+++++++.+.+.+..+. + .+.+..+++.++|.|..+
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-----~-~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM-----S-QDALLAALRLSAGAPGAA 201 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC-----C-HHHHHHHHHHcCCCHHHH
Confidence 66665543 44322444567899999999999888764321 1 233668899999999644
No 213
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.011 Score=74.09 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=97.7
Q ss_pred CccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.+..+.|.+..++.+.+.+. -...+-|.++|++|+|||++|+.+++... ..| +.+..+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f---i~v~~~---- 521 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF---IAVRGP---- 521 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE---EEEehH----
Confidence 45556677777666665542 01234588999999999999999999864 222 222211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc----------ccccCCCCCCCccccCCC
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL----------DDIGIPFWDGEKQSVDNQ 286 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~----------~~~~~~~~~~~~~~~~~~ 286 (1205)
++ +... .+ ..+..+..+.+.-.+..+.+|++|+++....- +.+...+...+. -+...
T Consensus 522 --~l----~~~~----vG--ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ld-g~~~~ 588 (733)
T TIGR01243 522 --EI----LSKW----VG--ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMD-GIQEL 588 (733)
T ss_pred --HH----hhcc----cC--cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhh-cccCC
Confidence 11 1111 01 12334455555445567899999998753110 000000000000 01123
Q ss_pred CCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 287 GRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 287 ~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+.-||.||..+....-+. .-...+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 4455666776665442112 234678899999999999998776432221111 1346777777754
No 214
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.83 E-value=0.022 Score=60.27 Aligned_cols=173 Identities=20% Similarity=0.205 Sum_probs=99.5
Q ss_pred cccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH-HHHHHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW-KEICGRIAD 226 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~ 226 (1205)
..++|-.++..++-.++. .++..-|.|+|+.|.|||+|...+..+.+ ..-+..+-|........ +-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 356777777777777775 34456688999999999999988888732 22234455555544332 224445555
Q ss_pred HhC----CCCCCCCCHHHHHHHHHHHHHcC-----CeEEEEEcccccccc-ccc-ccCCCCCCCccccCCCCCeEEEEec
Q 000975 227 QLG----LEIVRPDSLVEKANQLRQALKKK-----KRVLVILDDIWTQIN-LDD-IGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 227 ~l~----~~~~~~~~~~~~~~~l~~~l~~~-----k~~LlVlDdv~~~~~-~~~-~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
++. ......-+-.+....+.+.|+++ .++.+|+|+++--.. -.+ +...+- ++.+. ...+-|-|-+||
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlf-Disqs-~r~Piciig~Tt 179 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLF-DISQS-ARAPICIIGVTT 179 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHH-HHHhh-cCCCeEEEEeec
Confidence 443 22222223455567777777653 457888887764311 000 000000 01111 045677888999
Q ss_pred CchhHH-------hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 296 RDQHVL-------RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 296 r~~~v~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
|-.-.. . .+....++-++.++-++-..++++..
T Consensus 180 rld~lE~LEKRVKS-RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKS-RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHh-hcccceeeccCCCChHHHHHHHHHHh
Confidence 975432 2 23333466677788888888888776
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.018 Score=69.42 Aligned_cols=103 Identities=19% Similarity=0.311 Sum_probs=63.9
Q ss_pred cCCChHHHHHHHHHhc-------cC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLR-------DS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------~~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
++|.+..++.+.+.+. ++ ...+...+|+.|+|||.||+.++...- +.-+..+-++.|+.-.- ..+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~Ek----HsV 566 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEK----HSV 566 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHH----HHH
Confidence 5789999999888875 12 235677899999999999999998763 22245566666654322 223
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeE-EEEEcccccc
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRV-LVILDDIWTQ 265 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 265 (1205)
.+-+|.++.-- ..++ ...+-+..++ ++| +|.||+|...
T Consensus 567 SrLIGaPPGYV-Gyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 567 SRLIGAPPGYV-GYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHhCCCCCCc-eecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 33344333211 1111 2345555554 555 8888999875
No 216
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.03 Score=64.62 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+|+|+|++|+||||++.+++.....+.....+..++.... ....+.++...+.++..........+ .....+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~-L~~aL~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES-LLDLLERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH-HHHHHHHhc-
Confidence 478999999999999999999887654332344556655432 12233334444455544333222222 233333332
Q ss_pred CCeEEEEEcccc
Q 000975 252 KKRVLVILDDIW 263 (1205)
Q Consensus 252 ~k~~LlVlDdv~ 263 (1205)
..-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35588889764
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.79 E-value=0.01 Score=74.57 Aligned_cols=180 Identities=15% Similarity=0.152 Sum_probs=94.7
Q ss_pred CccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.+.++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++... ..| +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE---EEEecH----
Confidence 445677999888888776531 1235688999999999999999998764 222 233221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc-----c----ccCCCCCCCccccCCCC
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD-----D----IGIPFWDGEKQSVDNQG 287 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~-----~----~~~~~~~~~~~~~~~~~ 287 (1205)
++. ... .+ ........+.+......+.+|++||++....-. . +...+... .+.+ ...
T Consensus 247 --~i~----~~~----~g--~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~-ld~l-~~~ 312 (733)
T TIGR01243 247 --EIM----SKY----YG--ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTL-MDGL-KGR 312 (733)
T ss_pred --HHh----ccc----cc--HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHH-hhcc-ccC
Confidence 111 000 00 122334444444444567899999986531100 0 00000000 0001 122
Q ss_pred CeEEEE-ecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 288 RWTLLL-ASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 288 ~s~ilv-TTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
+..++| ||....-..... .-...+.++..+.++-.++++.........++ .....+++.+.|.--
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 333444 554433211011 12356788888888888888866532211111 124577888888653
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.037 Score=61.39 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHc----CCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCc-hhHHhhcCCCCceEE
Q 000975 240 EKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD-QHVLRINMSNPRIFS 312 (1205)
Q Consensus 240 ~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~-~~v~~~~~~~~~~~~ 312 (1205)
+.++.+.+.+.. +++-++|+|+++... ....+...+-. -.+++.+|++|.+ ..+...-.+....+.
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~ 187 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-------PPPGTVFLLVSARIDRLLPTILSRCRQFP 187 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCcCcEEEEEECChhhCcHHHHhcCEEEE
Confidence 444455554432 355688899998763 23333222222 2345555555544 444432244557899
Q ss_pred ccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 313 ISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 313 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
+.+++.++..+.+... +. . . ...++..++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~L~~~-~~--~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 188 MTVPAPEAAAAWLAAQ-GV--A--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ecCCCHHHHHHHHHHc-CC--C--h----HHHHHHHcCCCHHHHHHH
Confidence 9999999999988775 21 1 1 123577889999755433
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.78 E-value=0.0054 Score=64.09 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHh-C---C-----CCCCCCCHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL-G---L-----EIVRPDSLVEKAN 243 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~---~-----~~~~~~~~~~~~~ 243 (1205)
..++.|+|++|+|||++|.+++.... .....++|++... +....+.+ +++.. . . .............
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 46899999999999999999988765 3356889999876 55555433 33322 0 0 0000001122244
Q ss_pred HHHHHHHcCCeEEEEEccccc
Q 000975 244 QLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 244 ~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
.+.+.+.+.+.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 444444434556888887754
No 220
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.77 E-value=0.00023 Score=71.95 Aligned_cols=224 Identities=17% Similarity=0.108 Sum_probs=102.5
Q ss_pred hCCCceeEEEeeCCCCC-----CcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCcc
Q 000975 556 DGMTELLVLHLTGIHFP-----SLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRL 629 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L 629 (1205)
..+..+..++||+|.|. .+...|.+-.+|+..+++.-.... -..+. ..+..+-..+-++++|
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~------------~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELY------------SNLVMLLKALLKCPRL 94 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHH------------HHHHHHHHHHhcCCcc
Confidence 34677888888888876 345556666777777776543221 00000 0011112234455555
Q ss_pred CEEeccCCCCCCccCh---hhhcCCCCCCEEEccCCcCccccCCC-ccchH------hhccCCCCcEEEEecchhhhccc
Q 000975 630 KLLDLSNCSKLKVIKP---EVISRLSRLNELYMGNSFTRKVEGQS-NASVV------ELKQLSSLTILDMHIPDAQLLLE 699 (1205)
Q Consensus 630 ~~L~L~~~~~l~~~~~---~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~l~------~L~~L~~L~~L~l~~~~~~~~~~ 699 (1205)
+..+||.|..-...|+ ..+++-+.|.+|.+++|....+.|.. +..+. ...+-+.|+...+
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic---------- 164 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC---------- 164 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe----------
Confidence 5555555443333332 12445566666666666555433311 11111 1122233444333
Q ss_pred cccccccccceEEEcccccc---CCccCccceEEeeccCcccchhhHH-------HHhhhhchhhcccccCchhhhhhhc
Q 000975 700 DLISLDLERYRIFIGDVWNW---SGKYECSRTLKLKLDNSIYLGYGIK-------KLLKTTEDLYLDNLNGIQNIVQELD 769 (1205)
Q Consensus 700 ~L~~l~L~~~~i~~~~~~~~---~~~~~~l~~l~L~~~~~~~~~~~~~-------~~l~~L~~L~l~~~~~~~~~~~~l~ 769 (1205)
..|++..+..-.| ......++.+++..++... .++. ..+++|+.|++.++.....-...+.
T Consensus 165 -------grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp--egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 165 -------GRNRLENGSKELSAALLESHENLKEVKIQQNGIRP--EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred -------ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc--chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 2333333222222 1112345555555554432 2221 2346777777776554322211110
Q ss_pred -cCCCccccceEEeecCCcee----EeecCCCCCcccccccccccc
Q 000975 770 -NGEGFPRLKHLHVQNDPKIL----CIANSEGPVIFPLLQSLFLCN 810 (1205)
Q Consensus 770 -~~~~l~~L~~L~L~~~~~l~----~~~~~~~~~~~~~L~~L~l~~ 810 (1205)
....++.|++|.+.+|--.. .+...+....+|+|..|...+
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 12456778888888773111 111111334456666666654
No 221
>PRK08181 transposase; Validated
Probab=96.73 E-value=0.0014 Score=70.07 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Q 000975 166 ESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQL 245 (1205)
Q Consensus 166 ~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 245 (1205)
+|+. ...-+.++|++|+|||.||..+.+.... ....++|+++ .+++..+..... .. . ....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~~------~~L~~~l~~a~~----~~-~----~~~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTRT------TDLVQKLQVARR----EL-Q----LESA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeeeH------HHHHHHHHHHHh----CC-c----HHHH
Confidence 4554 3345899999999999999999987653 2334566653 445554433211 01 1 1223
Q ss_pred HHHHHcCCeEEEEEcccccc
Q 000975 246 RQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 246 ~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.+.+. +.=||||||+...
T Consensus 162 l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh--cCCEEEEeccccc
Confidence 33443 4559999999654
No 222
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.73 E-value=0.037 Score=63.54 Aligned_cols=88 Identities=25% Similarity=0.275 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (1205)
...+|.++|.+|+||||.|.+++.....++ + .+.-|++... +...+.++.++++++.+.... ......+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 457899999999999999999998876432 2 4444555432 233455666777777654322 122232333333
Q ss_pred HHHcCCeEEEEEcccc
Q 000975 248 ALKKKKRVLVILDDIW 263 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~ 263 (1205)
... +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 333 23 568888764
No 223
>PRK12377 putative replication protein; Provisional
Probab=96.73 E-value=0.016 Score=61.14 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=47.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
....+.++|.+|+|||+||..+++....+ ...++++++. +++..+-..... ... ...+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~~----~~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQS----GEKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cch----HHHHHHHhc-
Confidence 34678999999999999999999988632 3345777554 344444333211 101 123344443
Q ss_pred CCeEEEEEccccc
Q 000975 252 KKRVLVILDDIWT 264 (1205)
Q Consensus 252 ~k~~LlVlDdv~~ 264 (1205)
+--||||||+..
T Consensus 163 -~~dLLiIDDlg~ 174 (248)
T PRK12377 163 -KVDLLVLDEIGI 174 (248)
T ss_pred -CCCEEEEcCCCC
Confidence 667999999944
No 224
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.71 E-value=0.0031 Score=67.17 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=43.5
Q ss_pred cccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHH-HHhhcCCCcEEE
Q 000975 152 VHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVAR-QVVKEDLFDVVV 207 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~-~~~~~~~f~~~~ 207 (1205)
-++-+|+.+..-.+++|.+++...|.+.|.+|+|||-||-+..- ..-.++.|..++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 35567888888888999999999999999999999999977653 333445565443
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.67 E-value=0.05 Score=69.01 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=60.9
Q ss_pred ccCCChHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD-------SN--VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~~--~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+.+.+.. .+ ..++.++|+.|+|||++|+.+++..- +.-...+-++.+...+...+
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~--- 584 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTV--- 584 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccH---
Confidence 467999999888887751 11 23567999999999999999998753 11233455555543222111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.+.+|.+. +-.. .+....+.+.++.....+++||+++..
T Consensus 585 -~~l~g~~~-gyvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 -SKLIGSPP-GYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHhcCCCC-cccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 11222211 1000 011223455555445578999999875
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.65 E-value=0.017 Score=73.47 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=62.4
Q ss_pred ccCCChHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+.+.+... ...++.++|++|+|||++|+.++.... ..-...+.++++...+...
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccch----
Confidence 4679999999998888621 134688999999999999999998754 2223445566554322111
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
..+.+|.+. +.... +....+.+.++.....+|+||++...
T Consensus 640 ~~~l~g~~~-g~~g~-~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 VARLIGAPP-GYVGY-EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred HHHhcCCCC-CccCc-ccccHHHHHHHcCCCcEEEEeccccC
Confidence 112222221 11011 01123444444445568999999875
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.62 E-value=0.075 Score=60.01 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCcEEEEEEec
Q 000975 158 NPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEVT 212 (1205)
Q Consensus 158 ~~~~~~l~~~l~~---~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~ 212 (1205)
+...+.+.+.+.+ ....+|+|.|.-|+||||+.+.+.+..+.. ..--.++|++..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w 60 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAW 60 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccc
Confidence 4455666676663 457799999999999999999999988744 112234455443
No 228
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.0081 Score=64.17 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCH-
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDSL- 238 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~- 238 (1205)
..++.|+|.+|+|||++|..++........ ...++|++....++...+ .++++..+..... ..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999865432221 367899998887765544 4444544432111 0111
Q ss_pred --HHHHHHHHHHHHcC-CeEEEEEccccc
Q 000975 239 --VEKANQLRQALKKK-KRVLVILDDIWT 264 (1205)
Q Consensus 239 --~~~~~~l~~~l~~~-k~~LlVlDdv~~ 264 (1205)
.+....+.+.+.+. +.-+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 22334455555555 677889998754
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.023 Score=68.44 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=96.7
Q ss_pred CCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc----EEEEEEecCCCCHHHHHHHH
Q 000975 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD----VVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i 224 (1205)
....+.+||++++.++++.|....-.--.++|.+|+|||++|.-++.+.-...-.. ..++. -++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecH
Confidence 35667899999999999999843322335899999999999999888864321111 11111 011
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccc-c--CCCCCCCccccCCCCCeEEEEecCchhHH
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDI-G--IPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~ilvTTr~~~v~ 301 (1205)
..-..+..... .-+++...+.+.+.+.++..|++|.+.+...-..- + .-..+-++..+-.+.--.|-.||-+..--
T Consensus 235 g~LvAGakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 235 GSLVAGAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred HHHhccccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 11111111111 34666777777777667999999999875221110 0 00000111112123333455555444321
Q ss_pred h-----hcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 302 R-----INMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 302 ~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
. .-......+.++.-+.+++...++...
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1 013345688999999999999988765
No 230
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.60 E-value=0.0089 Score=65.26 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=58.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (1205)
.+++-|+|++|+||||||.+++..... .-..++|++..+.++.. .++.++.+.. ..+..++....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468999999999999999998877653 34567899887766553 3555555421 12244444444444
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
..+++..-+||+|.|-..
T Consensus 128 li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HhhccCCcEEEEcchhhh
Confidence 445456779999998643
No 231
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0027 Score=65.36 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=98.6
Q ss_pred HHHHhhhhchhhccccc--CchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecc
Q 000975 743 IKKLLKTTEDLYLDNLN--GIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGS 820 (1205)
Q Consensus 743 ~~~~l~~L~~L~l~~~~--~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 820 (1205)
+.+..+.++.|++.++. .+.++...+ ..+|.|+.|+|+.|+--..+ ...+ ...
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~il---e~lP~l~~LNls~N~L~s~I-~~lp-~p~-------------------- 120 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAIL---EQLPALTTLNLSCNSLSSDI-KSLP-LPL-------------------- 120 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHH---hcCccceEeeccCCcCCCcc-ccCc-ccc--------------------
Confidence 44556788888887754 334444445 78999999999888521111 1100 122
Q ss_pred ccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchh
Q 000975 821 QVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSL 900 (1205)
Q Consensus 821 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 900 (1205)
.+|+.|.+.+- .+.--.....+..+|.+++|+++.+ ++..+-....+.. ..-+.+++|
T Consensus 121 -----------~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e---------~~s~~v~tl 178 (418)
T KOG2982|consen 121 -----------KNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIE---------DWSTEVLTL 178 (418)
T ss_pred -----------cceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc-hhhhhcccccccc---------ccchhhhhh
Confidence 33444444332 1111111123455666677776663 2222221111110 122345555
Q ss_pred hccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEE
Q 000975 901 ALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELT 980 (1205)
Q Consensus 901 ~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~ 980 (1205)
.+..|+...- .........||++..+-+..|.+.....+... ..+|.+..|+
T Consensus 179 h~~~c~~~~w-------------------------~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s---e~~p~~~~Ln 230 (418)
T KOG2982|consen 179 HQLPCLEQLW-------------------------LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS---EPFPSLSCLN 230 (418)
T ss_pred hcCCcHHHHH-------------------------HHHHhHHhhcccchheeeecCcccchhhcccC---CCCCcchhhh
Confidence 5555543211 11112223477777777777766555433221 1345566666
Q ss_pred ecccCCcccccchhhHHhhccccEEEEcccccccc
Q 000975 981 VDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQG 1015 (1205)
Q Consensus 981 l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 1015 (1205)
++. +++.+......+..+++|..|.+++.|-...
T Consensus 231 L~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 231 LGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcc-cccccHHHHHHHcCCchhheeeccCCccccc
Confidence 665 5666554444556667777777766654443
No 232
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0045 Score=68.95 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHhccCC---------ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHH
Q 000975 157 RNPVFQKMMESLRDSN---------VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (1205)
Q Consensus 157 r~~~~~~l~~~l~~~~---------~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (1205)
-.+++++|++.|.++. .+=|.++|++|+|||-||++++....+ . +|...+..|+ +++ -
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--P----FF~~sGSEFd--Em~----V- 378 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--P----FFYASGSEFD--EMF----V- 378 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--C----eEeccccchh--hhh----h-
Confidence 4456788888887431 345889999999999999999988764 2 2333333332 111 0
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 228 LGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 228 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
| -...++..+...-+..-++.|++|+++..
T Consensus 379 -G-------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 379 -G-------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred -c-------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 0 11234455555555568899999998764
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.56 E-value=0.057 Score=63.02 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=103.3
Q ss_pred ccCCChHHHHHHHHHhc----c-CCccEEEEEcCCCCcHHHHHHHHHHHHhh---c---CCCcEEEEEEecCCCCHHHHH
Q 000975 153 HFPSRNPVFQKMMESLR----D-SNVNMIGLYGMGGVGKTTLVKVVARQVVK---E---DLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~----~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~---~---~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
..-+|+.+..+|-+.+. + ...+.+.|.|-+|+|||..+..|....+. + ..| ..+.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHHH
Confidence 45589999999888775 3 33458999999999999999999996541 2 233 33556666666799999
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHc----CCeEEEEEcccccc-----cccccccCCCCCCCccccCCCCCeEEE
Q 000975 222 GRIADQLGLEIVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQ-----INLDDIGIPFWDGEKQSVDNQGRWTLL 292 (1205)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~il 292 (1205)
..|..++.+.... .......+..++.. .+.+++++|+++.. +.+..|.. | |..+++|++
T Consensus 476 ~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd--W-------pt~~~sKLv 543 (767)
T KOG1514|consen 476 EKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD--W-------PTLKNSKLV 543 (767)
T ss_pred HHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc--C-------CcCCCCceE
Confidence 9999998776543 23444555555541 36789999998764 11222211 1 256677766
Q ss_pred EecCch--hHHh-h------cCCCCceEEccCCChHhHHHHHHHHh
Q 000975 293 LASRDQ--HVLR-I------NMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 293 vTTr~~--~v~~-~------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
|.+=.. +... + ..-+...+...+.+.++-.+....+.
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 654221 1110 0 01123456667777777766666665
No 234
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.55 E-value=0.029 Score=71.04 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=60.5
Q ss_pred ccCCChHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD-------SN--VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~~--~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+...+.. .+ ..++.++|+.|+|||++|+.+++... ..-...+.++++..... ..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~~----~~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFMEK----HS 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhhh----hh
Confidence 467999988888887752 11 24688999999999999999997653 12223455655543211 11
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+.+-+|.+.... .. +....+.+.++....-+|+|||+...
T Consensus 643 ~~~LiG~~pgy~-g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAPPGYV-GY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCCCccc-cc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 222233221111 11 11123444444344569999999854
No 235
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.13 Score=59.77 Aligned_cols=163 Identities=12% Similarity=0.147 Sum_probs=86.4
Q ss_pred ccCCccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
+...+.++.|-++.+.++-+.+. -+..+-|.++|++|.|||++|+.+++... ..| +.+..
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF-----lsvkg 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNF-----LSVKG 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCe-----eeccC
Confidence 44566677777776666665543 13456788999999999999999999876 333 33322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc---------cccCCCCCCCccccC
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD---------DIGIPFWDGEKQSVD 284 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~~~ 284 (1205)
. +++... .| ..+..+..+.+.-++-.+++|.||+++....-. .+...+...+. =+.
T Consensus 502 p----EL~sk~---vG-------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD-G~e 566 (693)
T KOG0730|consen 502 P----ELFSKY---VG-------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD-GLE 566 (693)
T ss_pred H----HHHHHh---cC-------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc-ccc
Confidence 1 121111 11 223344555554444567899999887542110 00000000000 000
Q ss_pred CCCCeEEEEecCchhHH-hhcCC---CCceEEccCCChHhHHHHHHHHhCC
Q 000975 285 NQGRWTLLLASRDQHVL-RINMS---NPRIFSISTLADGEAKSLFEKIVGD 331 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~v~-~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 331 (1205)
...+--||-.|..++.. ...+. -++.+.++.=+.+--.++|+.++..
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 12233334344444332 11233 2456667666666677888888844
No 236
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.53 E-value=0.014 Score=61.80 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=54.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 239 (1205)
..++.|+|.+|+|||++|..++....... .-..++|++....++...+ ..+++..+.... ...+..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCHH
Confidence 56899999999999999999987754211 1156799998877766554 344444322211 111233
Q ss_pred HHHHHHHHHHH---cCCeEEEEEccccc
Q 000975 240 EKANQLRQALK---KKKRVLVILDDIWT 264 (1205)
Q Consensus 240 ~~~~~l~~~l~---~~k~~LlVlDdv~~ 264 (1205)
+....+.+... ..+.-++|+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 33333333222 34556899998754
No 237
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.48 E-value=0.011 Score=64.45 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (1205)
.+++-|+|++|+||||||.+++..... .-..++|++....++.. .++.++.+.. ..++.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 468899999999999999998877653 34568899988776653 3455554321 12244444444444
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
..+++..-+||+|-|-..
T Consensus 128 li~s~~~~lIVIDSvaal 145 (325)
T cd00983 128 LVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHhccCCCEEEEcchHhh
Confidence 445556779999997643
No 238
>PRK09354 recA recombinase A; Provisional
Probab=96.48 E-value=0.011 Score=64.97 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (1205)
.+++-|+|++|+||||||.+++.... ..-..++||+....++.. .++.++.+.. ..++.++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 46889999999999999999987765 334678999998877753 4555555421 12244455544544
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.++++..-+||+|-|-..
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 455556779999998643
No 239
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.042 Score=59.39 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 160 VFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 160 ~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
..+++..++.. + ..|.+.|++|+|||++|+.++.... . ..+++++....+..+++
T Consensus 10 l~~~~l~~l~~-g-~~vLL~G~~GtGKT~lA~~la~~lg--~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKS-G-YPVHLRGPAGTGKTTLAMHVARKRD--R---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhc-C-CeEEEEcCCCCCHHHHHHHHHHHhC--C---CEEEEeCCccCCHHHHh
Confidence 34455555543 2 3467999999999999999987432 2 23556666555544443
No 240
>PRK04296 thymidine kinase; Provisional
Probab=96.45 E-value=0.0031 Score=64.31 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHHc
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR--PDSLVEKANQLRQALKK 251 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 251 (1205)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.......++++++.+... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999999887532 23344442 1112222234456666654332 1123333444433 32
Q ss_pred CCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 252 KKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
++.-+||+|.+... ++..++...+ ...|..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---------~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---------DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---------HHcCCeEEEEecCcc
Confidence 34558999999653 1122221111 246778999998865
No 241
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.44 E-value=0.011 Score=64.99 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---------CCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP---------DSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~~ 239 (1205)
..++-|+|++|+|||+++..++-..... ..-..++||+....+..+++. ++++.++.+.... .+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4688899999999999999887544321 122478999999988888874 5677776653210 1222
Q ss_pred HH---HHHHHHHHHcCCeEEEEEccccc
Q 000975 240 EK---ANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 240 ~~---~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
+. +..+...+.+.+--|||+|.+-.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 22 23333344444555789998754
No 242
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.41 E-value=0.021 Score=70.37 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=60.7
Q ss_pred ccCCChHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.++.++.+.+.+.. . ....+.++|++|+|||++|+.++.... .. .+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~---~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CC---cEEeechhhcccc----c
Confidence 367888888888887751 1 234688999999999999999988763 22 3455555432211 1
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+.+-+|.+.... . .+....+.+.+.+....+|+||+++..
T Consensus 530 ~~~LiG~~~gyv-g-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYV-G-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCcc-c-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 222233221110 0 111123444455456679999999876
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.40 E-value=0.15 Score=58.13 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
...+|.++|..|+||||.|.+++...+.++ + .+..|++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCc
Confidence 357999999999999999999998776332 2 44555543
No 244
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.38 E-value=0.0029 Score=59.37 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|+|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.023 Score=59.90 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=52.5
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 000975 160 VFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDS 237 (1205)
Q Consensus 160 ~~~~l~~~l~~--~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 237 (1205)
.+..+.+.... .....+.++|.+|+|||+||..+++....+ -..++++++ .++...+-.... . ...+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~-~--~~~~ 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFS-N--SETS 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHh-h--cccc
Confidence 34444444432 223568899999999999999999987643 345566643 445544444332 1 0101
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 238 LVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 238 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
...+.+.+. +.=+|||||+...
T Consensus 153 ----~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 153 ----EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ----HHHHHHHhc--cCCEEEEeCCCCC
Confidence 223444443 4458899998654
No 246
>PRK10867 signal recognition particle protein; Provisional
Probab=96.36 E-value=0.17 Score=58.05 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=36.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLE 231 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 231 (1205)
...+|.++|++|+||||.|.+++.....+. -..+..|++... +...+-++..++..+.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 467899999999999999999988776431 223455554422 12223334445555543
No 247
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.35 E-value=0.0077 Score=66.15 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=44.6
Q ss_pred ccCCChHHHHHHHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCCcEEEE
Q 000975 153 HFPSRNPVFQKMMESLRD------SNVNMIGLYGMGGVGKTTLVKVVARQVVK-----EDLFDVVVD 208 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~-----~~~f~~~~w 208 (1205)
.++|-++.++++++++.. ...+++.++|++|+||||||+.+++.... .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 578999999999998862 24578999999999999999999998753 224555556
No 248
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.015 Score=64.94 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+++++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.+........+.. .....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-LALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-HHHHHhc-
Confidence 46899999999999999999998864322224566666443 23455666777777777654332222222 2223333
Q ss_pred CCeEEEEEccccc
Q 000975 252 KKRVLVILDDIWT 264 (1205)
Q Consensus 252 ~k~~LlVlDdv~~ 264 (1205)
++-++++|..-.
T Consensus 215 -~~DlVLIDTaG~ 226 (374)
T PRK14722 215 -NKHMVLIDTIGM 226 (374)
T ss_pred -CCCEEEEcCCCC
Confidence 445677998753
No 249
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.053 Score=61.98 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
..=|.+||++|.|||-||++|++.... . |++|... +++... .| ..+..+..+.++-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~--N-----FisVKGP----ELlNkY---VG-------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA--N-----FISVKGP----ELLNKY---VG-------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC--c-----eEeecCH----HHHHHH---hh-------hHHHHHHHHHHHhhcC
Confidence 344789999999999999999999763 2 4555443 222221 11 2344566666666667
Q ss_pred CeEEEEEcccccccc-------------cccccCCCCCCCccccCCCCCeEEEEecCchhHHhhcC---C-CCceEEccC
Q 000975 253 KRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINM---S-NPRIFSIST 315 (1205)
Q Consensus 253 k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~---~-~~~~~~l~~ 315 (1205)
-+++|+||+++..-. ..++..-+-. +....|--||-.|..+++..-++ + -++..-|+.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG-----l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG-----LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc-----cccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 899999999975411 1111111100 11346677888887777653222 1 135677777
Q ss_pred CChHhHHHHHHHHhC
Q 000975 316 LADGEAKSLFEKIVG 330 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~ 330 (1205)
=+.+|-.+.++....
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 888899999988875
No 250
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.013 Score=66.75 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=63.2
Q ss_pred CccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH
Q 000975 150 GYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (1205)
.+.++.|-+..+.++.+++. . ...+=|.++|++|.|||.||+++++...+ . ++.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch---
Confidence 35667788888888777664 1 12345789999999999999999999763 2 3333332
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+|.....+ ..++.++++.+.-...-++++++|+++-.
T Consensus 258 -----eivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 -----EIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred -----hhhcccCc------ccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 12221111 23445566666555578999999998754
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.32 E-value=0.021 Score=56.96 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
++.|+|.+|+||||+|..++..... +-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3689999999999999999988753 446778888776543
No 252
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.035 Score=65.13 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=68.0
Q ss_pred ccCCccccCCChHHHHHHHHHhc---------cCC---ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR---------DSN---VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~---------~~~---~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
|...+.++.|-++.+.+|.+-+. ..+ ..=|.++|++|+|||-+|++|+.... .-|++|..+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH
Confidence 44566778888888888888764 122 34578999999999999999999865 235555543
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+++..- .| ..++.++++.++-++.++|.|+||+++..
T Consensus 740 ----ELLNMY---VG-------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLNMY---VG-------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHHHH---hc-------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222111 11 23455666777666679999999999875
No 253
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.30 E-value=0.014 Score=61.75 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (1205)
..++.|+|.+|+|||++|.+++..... .-..++|++.. ......+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHH
Confidence 468999999999999999999987653 34678999987 5554443
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0023 Score=65.43 Aligned_cols=82 Identities=26% Similarity=0.425 Sum_probs=44.2
Q ss_pred hCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCC--cCCC--CccccccccCcEEEcccCCCCccc--hhccCCCcc
Q 000975 556 DGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCC--HLED--VARVGDLAKLEILSFRNSHIEQLP--EQIGNLTRL 629 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~--~l~~--~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L 629 (1205)
..+..|..|++.+..++.+- .+-.|++|++|.++.| ++.. +....++++|++|++++|+++.+. ..+..|.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 44555666666665555432 2445667777777777 3332 333444566666666666555321 123445555
Q ss_pred CEEeccCCC
Q 000975 630 KLLDLSNCS 638 (1205)
Q Consensus 630 ~~L~L~~~~ 638 (1205)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 555555543
No 255
>PRK07261 topology modulation protein; Provisional
Probab=96.27 E-value=0.0078 Score=60.17 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCCcEEEE
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVD 208 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 208 (1205)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998775421 23455555
No 256
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.076 Score=63.71 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=101.7
Q ss_pred cccCCChHH---HHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 152 VHFPSRNPV---FQKMMESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 152 ~~~~gr~~~---~~~l~~~l~~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
.++.|-++. ++++++.|..+ -++=|.++|++|+|||-||++++....+ . |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV--P-----F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--P-----FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--c-----eeeechH-----
Confidence 445565554 45555555421 1344789999999999999999998763 2 3444432
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccccc--cc-CCCC---CCCcccc------CCCC
Q 000975 220 ICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD--IG-IPFW---DGEKQSV------DNQG 287 (1205)
Q Consensus 220 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~~-~~~~---~~~~~~~------~~~~ 287 (1205)
+..+.+.. .....++.+...-+...++.|.+|+++...--.. .. ..-. ..+.+.+ ....
T Consensus 379 ---EFvE~~~g------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVG------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcc------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11122211 1133455666655667889999998876421110 00 0000 0011111 1222
Q ss_pred CeEEEEecCchhHHhhc---CC-CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 288 RWTLLLASRDQHVLRIN---MS-NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 288 ~s~ilvTTr~~~v~~~~---~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
+--++-+|+..++...+ .+ -++.+.++.=+..+..+.|.-++.......+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 33344455555544211 12 2457788888889999999999855333344556666 88888887744
No 257
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.012 Score=61.59 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=46.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
.++|.++|++|+|||+|.+++++...++ ..|....-+.+.. ..++.+....-|. ......+++.+...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESgK------lV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESGK------LVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhhh------HHHHHHHHHHHHHh
Confidence 4789999999999999999999987654 3333333333332 2222333222111 12233444444444
Q ss_pred cCCe-EEEEEcccccc
Q 000975 251 KKKR-VLVILDDIWTQ 265 (1205)
Q Consensus 251 ~~k~-~LlVlDdv~~~ 265 (1205)
..+. +++.+|+|...
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 3233 44556988754
No 258
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.24 E-value=0.025 Score=61.63 Aligned_cols=88 Identities=24% Similarity=0.208 Sum_probs=51.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
..++++|+|++|+||||++..++.....+..-..+..|+.... ....+.+....+.++.+........+. ....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHcc
Confidence 3568999999999999999999988764311135566665542 122334444555566554333233332 23333332
Q ss_pred cCCeEEEEEccc
Q 000975 251 KKKRVLVILDDI 262 (1205)
Q Consensus 251 ~~k~~LlVlDdv 262 (1205)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 3347777853
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.021 Score=60.91 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=49.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
+..-+.++|.+|+|||.||.++.+... +.. -.+.+++ ..+++..+....... .....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDEG--------RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHhh-
Confidence 556689999999999999999999987 332 3455554 345566665554321 11223333343
Q ss_pred CCeEEEEEcccccc
Q 000975 252 KKRVLVILDDIWTQ 265 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~ 265 (1205)
+-=||||||+-..
T Consensus 167 -~~dlLIiDDlG~~ 179 (254)
T COG1484 167 -KVDLLIIDDIGYE 179 (254)
T ss_pred -cCCEEEEecccCc
Confidence 4458999998654
No 260
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.037 Score=55.93 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=41.1
Q ss_pred cccCCccccCCChHHHHHHHHHhc---c----------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR---D----------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~---~----------~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|...+.++.|-++.++++++.+. . ...+-|..+|++|+|||-+|++.+....
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 345566778889999999998774 0 1245578999999999999999887654
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.038 Score=61.17 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=51.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
+.++|+++|++|+||||++..++.....++ ..+..+++... ....+-++..++..+.+.....+..+..+ ..+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~-aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR-ALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHH-HHHHHH
Confidence 347999999999999999999998765322 24455665432 12233334455556655443323333333 333333
Q ss_pred c-CCeEEEEEccccc
Q 000975 251 K-KKRVLVILDDIWT 264 (1205)
Q Consensus 251 ~-~k~~LlVlDdv~~ 264 (1205)
. .+.=++++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 2 1234678886644
No 262
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.17 E-value=0.012 Score=59.49 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (1205)
...+|.+.|+.|+||||+|+.++.... ..+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEe
Confidence 456899999999999999999999886 3455555553
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=96.14 E-value=0.067 Score=66.14 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=92.8
Q ss_pred EEc--CCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q 000975 178 LYG--MGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRV 255 (1205)
Q Consensus 178 i~G--~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~ 255 (1205)
+.| |.++||||+|..++++.--...-..++-++++...++..+. ++++.+....+ +...+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCE
Confidence 347 78999999999999986321111346778888765555443 33332211000 0012457
Q ss_pred EEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCC
Q 000975 256 LVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDS 332 (1205)
Q Consensus 256 LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 332 (1205)
++|+|+++... ...++...+-. -...+++|++|.+.. +...-......+++.++++++-...+.+.+...
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEe-------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhC-------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc
Confidence 99999999874 33333222211 134566666665553 322113446789999999999998888776322
Q ss_pred CCCCchHHHHHHHHHhcCCChHHH
Q 000975 333 AKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
.. .-.++....|++.++|-+-.+
T Consensus 706 gi-~i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 706 GL-ELTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CC-CCCHHHHHHHHHHcCCCHHHH
Confidence 11 112457789999999988433
No 264
>PRK06696 uridine kinase; Validated
Probab=96.10 E-value=0.0087 Score=63.03 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 156 SRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 156 gr~~~~~~l~~~l~---~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
.|++.+++|.+.+. .+...+|+|.|.+|+||||+|+.++.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777888888875 345779999999999999999999998753
No 265
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.09 E-value=0.029 Score=65.99 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=46.8
Q ss_pred cccccCCccccCCChHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE
Q 000975 144 ERFSVRGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (1205)
Q Consensus 144 ~~~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (1205)
+...|....+++-..+-++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+-|.+
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 344455555566566678888888862 2357899999999999999999998854 66677864
No 266
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.026 Score=65.45 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=86.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
.-|.|.|+.|+|||+||+++++... +.+.-++.+|+++.- ...+.+++.+.. ...+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~- 492 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW- 492 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh-
Confidence 4588999999999999999999887 466667778877643 223333332221 1122232
Q ss_pred CCeEEEEEccccccc--------cccc----ccCCCCCCCccccCCCCCeEEEEecCchhHHhhcC----CCCceEEccC
Q 000975 252 KKRVLVILDDIWTQI--------NLDD----IGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSIST 315 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~~--------~~~~----~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~ 315 (1205)
-.+-+|||||++-.. +|.. +...+...+..+...+..-++|.|....+...-.. --...+.+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 378899999987431 2211 11111111112222223334555655544331111 1124678888
Q ss_pred CChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC
Q 000975 316 LADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (1205)
Q Consensus 316 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 352 (1205)
+...+-.++++.............+ ..-+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~d-Ld~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDD-LDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHH-HHHHHHhcCCc
Confidence 8888877777766533221111122 22377777763
No 267
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.031 Score=63.19 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=79.2
Q ss_pred cCCChHHHHHHHHHhc-cCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCcEEEEEEec
Q 000975 154 FPSRNPVFQKMMESLR-DSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVDAEVT 212 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-~~~~~-vi~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~ 212 (1205)
+++-+....++..+.. ..+.+ .+.++|++|+||||+|..+++...-.. ...-+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777776 33344 489999999999999999999864211 12344555555
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCccccCCCC
Q 000975 213 HTPD---WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQG 287 (1205)
Q Consensus 213 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~ 287 (1205)
.... ..+.++.+.+....... .++.-++++|+++.... -.++...+-. ...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe-------p~~ 138 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE-------PPK 138 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc-------CCC
Confidence 4443 34444444444332211 14667899999987632 2222222111 345
Q ss_pred CeEEEEecCchh-HHhhcCCCCceEEccC
Q 000975 288 RWTLLLASRDQH-VLRINMSNPRIFSIST 315 (1205)
Q Consensus 288 ~s~ilvTTr~~~-v~~~~~~~~~~~~l~~ 315 (1205)
.+++|++|.... +...-......+++.+
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCC
Confidence 677888887443 2221123345667766
No 268
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.05 E-value=0.0092 Score=74.01 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=91.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH-hhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV-VKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---RPDSLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 247 (1205)
+.++++|+|+.|.||||+.+.+.... ..+.- ++|.+.....+ ..+.++...++.+.. ...+-......+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44789999999999999999998762 21111 11111110000 001111111111000 00011111222233
Q ss_pred HHHc-CCeEEEEEcccccccccc---cccCCCCCCCccccCCCCCeEEEEecCchhHHhhcCCCCc--eEEccCCChHhH
Q 000975 248 ALKK-KKRVLVILDDIWTQINLD---DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPR--IFSISTLADGEA 321 (1205)
Q Consensus 248 ~l~~-~k~~LlVlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~~~~~--~~~l~~L~~~e~ 321 (1205)
.+.. .++-|+++|+.-...+.. .+...+ ..++ ...|+.+|+||....+......... ...+. ++.+ .
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~ai----Le~l-~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~ 468 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISI----LEYL-LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-T 468 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHH----HHHH-HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-C
Confidence 3322 478999999987653321 111000 0111 2357899999999887643222222 11221 1111 1
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 000975 322 KSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINWLRK 380 (1205)
Q Consensus 322 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~ 380 (1205)
.. +..+.-...+ -...|-.|++++ |+|-.|.--|..+.+.....++++++.+..
T Consensus 469 l~-p~Ykl~~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 469 LS-PTYKLLKGIP---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred Cc-eEEEECCCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 00 0011101111 134567888877 788888877777766656667777776654
No 269
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.0027 Score=64.90 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=52.6
Q ss_pred hCCCceeEEEeeCC--CCC-CcccccCCCcCCcEEEccCCcCCC---CccccccccCcEEEcccCCCCccc----hhccC
Q 000975 556 DGMTELLVLHLTGI--HFP-SLPLSLGSLINLRTLSFDCCHLED---VARVGDLAKLEILSFRNSHIEQLP----EQIGN 625 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~--~i~-~lp~~i~~L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp----~~i~~ 625 (1205)
..+++|+.|.+|.| ++. .++-....+++|++|+|++|+|.. ...+..+.+|..||+.+|..+.+- .-+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 45666677777776 333 444445556777777777777664 345556677778888887666552 12556
Q ss_pred CCccCEEeccCC
Q 000975 626 LTRLKLLDLSNC 637 (1205)
Q Consensus 626 L~~L~~L~L~~~ 637 (1205)
+++|++|+-...
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 788888876653
No 270
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.04 E-value=0.013 Score=68.18 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=52.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..++..+.|++|.||||||+.++++.. | .++-|++|+.-+...+-..|...+....... ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 357899999999999999999998753 2 4678888888776666555554443221110 01
Q ss_pred CCeEEEEEcccccc
Q 000975 252 KKRVLVILDDIWTQ 265 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~ 265 (1205)
.++..+|+|+++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 47778899988765
No 271
>PRK06921 hypothetical protein; Provisional
Probab=96.04 E-value=0.027 Score=60.56 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (1205)
....+.++|..|+|||.||..+++....+. -..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 356789999999999999999999875321 345677764
No 272
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.19 Score=50.67 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=83.1
Q ss_pred cCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHH
Q 000975 154 FPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (1205)
+.|-++.+++|.+.+. -.+.+=|.++|++|.|||-||+.|+++.. +.|+.||.. ++
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs----el 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS----EL 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH----HH
Confidence 3455677777766653 12455688999999999999999998753 345666653 22
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc--c--------------cccCCCCCCCccccC
Q 000975 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL--D--------------DIGIPFWDGEKQSVD 284 (1205)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~--------------~~~~~~~~~~~~~~~ 284 (1205)
.+... | .....+.++.-.-+..-+..|+.|+++....- + .+...+.. +.
T Consensus 218 vqk~i---g-------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg-----fe 282 (404)
T KOG0728|consen 218 VQKYI---G-------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG-----FE 282 (404)
T ss_pred HHHHh---h-------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc-----cc
Confidence 22111 1 11122233332223346677888887654110 0 00000000 12
Q ss_pred CCCCeEEEEecCchhHHhhc-C---CCCceEEccCCChHhHHHHHHHHh
Q 000975 285 NQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
....-+||+.|..-++...+ . ..++-++.++-+++.-.+.++-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 45677899888766554311 1 224567777777776667766554
No 273
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.00 E-value=0.35 Score=55.51 Aligned_cols=91 Identities=24% Similarity=0.195 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (1205)
...++.++|.+|+||||.|.+++.....+.. ..+.-|++... +...+-+...++..+.+.... .+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4578999999999999999999988642222 23455554432 222333444555555443221 123333333333
Q ss_pred HHHcCCeEEEEEcccc
Q 000975 248 ALKKKKRVLVILDDIW 263 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~ 263 (1205)
.......=++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3332222367777654
No 274
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.98 E-value=0.63 Score=48.24 Aligned_cols=209 Identities=10% Similarity=0.092 Sum_probs=112.8
Q ss_pred ccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh----hcCCCcEEEEEEecCC----------C-
Q 000975 151 YVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV----KEDLFDVVVDAEVTHT----------P- 215 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~~~~----------~- 215 (1205)
.....++++....+.......+.+-..++|++|.||-|.+..+.+..- .+-.-+..-|.+-+.. .
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 334556666666666665556678899999999999998888777642 1122344555544432 1
Q ss_pred ----------CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeE-EEEEccccccc--ccccccCCCCCCCccc
Q 000975 216 ----------DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRV-LVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (1205)
Q Consensus 216 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 282 (1205)
.-+-+.++++++..-..+-. ....+.| ++|+-.++... .-.++....-.
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk----- 153 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEK----- 153 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHH-----
Confidence 01223333333322111000 0001333 45555555431 11111111000
Q ss_pred cCCCCCeEEEEecCc--hhHHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHH
Q 000975 283 VDNQGRWTLLLASRD--QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~--~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 360 (1205)
-...+|+|+...+ +-+... ....-.+++...+++|-...+.+.+..+.- .--.+++.+|+++++|.---...+-
T Consensus 154 --Ys~~~RlIl~cns~SriIepI-rSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 154 --YSSNCRLILVCNSTSRIIEPI-RSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLPKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred --HhcCceEEEEecCcccchhHH-hhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHhcccHHHHHHHH
Confidence 1356677664332 222221 233447899999999999999998843221 1126789999999999764333333
Q ss_pred HHhcCC-----------CchHHHHHHHHHHhc
Q 000975 361 NALKGQ-----------STHVWKDAINWLRKS 381 (1205)
Q Consensus 361 ~~l~~~-----------~~~~w~~~l~~l~~~ 381 (1205)
..++-+ +..+|+-++.+....
T Consensus 230 E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 230 EAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 333211 356899988877653
No 275
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.039 Score=66.12 Aligned_cols=139 Identities=18% Similarity=0.153 Sum_probs=77.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+.+.++|++|+|||.||+++++..+ ..|-.+.+-..... .+| ..+..+..+.+.-++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~l~sk------------~vG-------esek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSELLSK------------WVG-------ESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHHHhcc------------ccc-------hHHHHHHHHHHHHHc
Confidence 345789999999999999999999654 44433222111110 011 122333444443344
Q ss_pred CCeEEEEEcccccccccccccC------CCCCCC--ccccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChH
Q 000975 252 KKRVLVILDDIWTQINLDDIGI------PFWDGE--KQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADG 319 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~~~~~~~~~------~~~~~~--~~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~ 319 (1205)
..++.|++|+++....+..-.. .....+ .+-+....+..||-||..+....-++ .-...+.++.-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 6889999999987533322110 000000 00011233434455555544332111 22458889999999
Q ss_pred hHHHHHHHHhCC
Q 000975 320 EAKSLFEKIVGD 331 (1205)
Q Consensus 320 e~~~Lf~~~~~~ 331 (1205)
+..+.|..+..+
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999999854
No 276
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.96 E-value=0.055 Score=57.47 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE------IVRPDSLVE----- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~----- 240 (1205)
-..++|.|.+|+||||||+.+++..+.+ +-+.++++-+.+.. .+.++.+.+.+.-..+ ....+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999999998742 23567778887764 4456665554431111 011111111
Q ss_pred -HHHHHHHHHH-c-CCeEEEEEcccccc
Q 000975 241 -KANQLRQALK-K-KKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -~~~~l~~~l~-~-~k~~LlVlDdv~~~ 265 (1205)
..-.+.+++. + ++.+|+|+||+-..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 2233455554 3 79999999998654
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.94 E-value=0.035 Score=61.50 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh----cCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---------CCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK----EDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP---------DSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~~ 239 (1205)
..++-|+|.+|+|||+|+..++-.... ...-..++||+....+...++. ++++.++.+.... .+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCHH
Confidence 467889999999999999988754432 1223578999999999888874 5677777653211 1222
Q ss_pred HH---HHHHHHHHHcCCeEEEEEccccc
Q 000975 240 EK---ANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 240 ~~---~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
+. ...+...+.+.+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 22 22233333334455788887653
No 278
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.94 E-value=0.035 Score=67.99 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=80.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
+-|.++|++|+|||++|+.++.... ..| +.++.+. +.. + ..+ ........+.+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~------~~~-~--~~g-------~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSD------FVE-M--FVG-------VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHH------hHH-h--hhc-------ccHHHHHHHHHHHHhcC
Confidence 3488999999999999999988764 233 2332221 111 0 001 01112233333333357
Q ss_pred eEEEEEcccccccccc------------cccCCCCCCCccccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCC
Q 000975 254 RVLVILDDIWTQINLD------------DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLA 317 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~ 317 (1205)
+++|++|+++....-. .....+...+. -+....+.-||.||..++....+. .-.+.+.++.-+
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md-g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh-cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 8899999997642100 00000000000 011234555666777766442122 224678888888
Q ss_pred hHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC
Q 000975 318 DGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (1205)
Q Consensus 318 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 352 (1205)
.++-.++++.+.......++.. ...+++.+.|.
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 8888888888874432222211 23456666553
No 279
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.93 E-value=0.032 Score=59.76 Aligned_cols=91 Identities=27% Similarity=0.274 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 239 (1205)
..+.=|+|.+|+|||+||..++-..... +.-..++|++-...+....+. +|++..+.+... ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4688999999999999999888664322 223479999999989887774 577766543210 01122
Q ss_pred H---HHHHHHHHHHcCCeEEEEEccccc
Q 000975 240 E---KANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 240 ~---~~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
+ ....+...+.+.+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 2 223333334445666888887643
No 280
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=1.4 Score=49.49 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH-cCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK-KKK 253 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k 253 (1205)
=-.++||+|+|||+++.++++... |+.. -...+...+- .+ +++.|. ...
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n---------------------~d----Lr~LL~~t~~ 286 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLD---------------------SD----LRHLLLATPN 286 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCc---------------------HH----HHHHHHhCCC
Confidence 357999999999999999999864 4432 2222222111 11 222222 246
Q ss_pred eEEEEEcccccccccccccCC-----------C-CCCCccccC----CCCCeE-EEEecCchhHHh---hcCCC-CceEE
Q 000975 254 RVLVILDDIWTQINLDDIGIP-----------F-WDGEKQSVD----NQGRWT-LLLASRDQHVLR---INMSN-PRIFS 312 (1205)
Q Consensus 254 ~~LlVlDdv~~~~~~~~~~~~-----------~-~~~~~~~~~----~~~~s~-ilvTTr~~~v~~---~~~~~-~~~~~ 312 (1205)
+-+||+.|++-..+...-... . ..++..+++ ...+=| ||+||...+-.. +..+. +.-+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 778888888754221111000 0 001112221 122234 556777665432 11222 34678
Q ss_pred ccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHH-HHhcCC
Q 000975 313 ISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA-NALKGQ 366 (1205)
Q Consensus 313 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~-~~l~~~ 366 (1205)
|.-=+.+.-..|+....+.+.++. +..+|.+...|.-+.=..+| .+|+.+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 888899999999999987644333 34455554455444434444 444554
No 281
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.88 E-value=0.039 Score=61.61 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=43.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
..++-|+|++|+|||++|.+++........ -..++||+....++...+. ++++.++.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~ 163 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLD 163 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCC
Confidence 568889999999999999999876532111 1478999999888877764 455655543
No 282
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.058 Score=57.54 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHH-hCCC-CCCCCCHHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ-LGLE-IVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~~l~~~l~ 250 (1205)
.+++=|+|+.|+||||+|.+++-..+ ..-..++|++....+++..+ ++++.. +..- .....+.++ ...+.+.+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~-q~~i~~~~~ 135 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQ-QLEIAEKLA 135 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHH-HHHHHHHHH
Confidence 46889999999999999999887765 44458899999999988776 344444 2111 111112222 222222222
Q ss_pred -cC--CeEEEEEccccc
Q 000975 251 -KK--KRVLVILDDIWT 264 (1205)
Q Consensus 251 -~~--k~~LlVlDdv~~ 264 (1205)
.. +--|+|+|.|-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 12 356899997744
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.012 Score=55.39 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFD 204 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~ 204 (1205)
.-|+|.|++|+||||+++++++..+.+. |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4589999999999999999999987543 54
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.037 Score=62.20 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+++++|++|+||||+|.+++........+ .+..++... .....+.++..++..+.+.... .....+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~----~~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh----HHHHHHHHHHHh
Confidence 4689999999999999999999765322222 344444332 1223344455556666544322 123344444543
Q ss_pred CCeEEEEEcc
Q 000975 252 KKRVLVILDD 261 (1205)
Q Consensus 252 ~k~~LlVlDd 261 (1205)
...=+||+|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 3334588884
No 285
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.82 E-value=0.065 Score=57.03 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
...++.|.|.+|+|||++|.++....- ..-..++|++.... ..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCC--HHHHHHH
Confidence 356899999999999999998876643 22457889887653 4455444
No 286
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.81 E-value=0.031 Score=62.07 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=44.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEI 232 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 232 (1205)
..++-|+|.+|+|||++|..++-..... ..-..++|++....+..+++ .+|++.++.+.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~ 185 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNG 185 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCCh
Confidence 4678899999999999999888653311 11237899999999888776 56677776543
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.80 E-value=0.023 Score=56.97 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=44.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
..-+.++|.+|+|||.||..+.+....+ . ..+.|+++ .+++..+-.. .... .. ..+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g-~~v~f~~~------~~L~~~l~~~----~~~~-~~----~~~~~~l~-- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-G-YSVLFITA------SDLLDELKQS----RSDG-SY----EELLKRLK-- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEH------HHHHHHHHCC----HCCT-TH----CHHHHHHH--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-C-cceeEeec------Cceecccccc----cccc-ch----hhhcCccc--
Confidence 4568999999999999999999887542 2 34566653 4444444321 1111 21 22344454
Q ss_pred CeEEEEEcccccc
Q 000975 253 KRVLVILDDIWTQ 265 (1205)
Q Consensus 253 k~~LlVlDdv~~~ 265 (1205)
+-=||||||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 3457889998654
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=95.80 E-value=0.097 Score=57.97 Aligned_cols=92 Identities=23% Similarity=0.218 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCC---CHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPD---SLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~ 247 (1205)
+..+|.++|++|+||||++.+++...... .+ .++.+..... ....+-++..++.++.+..... +....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 45799999999999999999999877643 23 3444543321 2233445666777776543211 22222222222
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.......=++++|.+...
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 222222238899987543
No 289
>PRK06526 transposase; Provisional
Probab=95.78 E-value=0.017 Score=61.52 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=43.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
...+.++|++|+|||+||..+......++ + .+.|+ +..++...+..... .. ... .....+ .
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~~-~~~----~~l~~l--~ 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----AG-RLQ----AELVKL--G 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----cC-cHH----HHHHHh--c
Confidence 45689999999999999999998765322 2 33443 23344444433211 10 111 112223 2
Q ss_pred CeEEEEEcccccc
Q 000975 253 KRVLVILDDIWTQ 265 (1205)
Q Consensus 253 k~~LlVlDdv~~~ 265 (1205)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4568999999754
No 290
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.76 E-value=0.053 Score=54.57 Aligned_cols=54 Identities=30% Similarity=0.338 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGL 230 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 230 (1205)
++.++|++|+||||+++.++......+ ..++.++.... ....+.+...++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 688999999999999999998876432 23455554432 1233334444454443
No 291
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.76 E-value=0.049 Score=60.75 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
..++-|+|.+|+||||++.+++....... .-..++||+....+....+. ++++.++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 56889999999999999999987754211 11378999998888877654 556665543
No 292
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.75 E-value=0.043 Score=59.81 Aligned_cols=86 Identities=23% Similarity=0.287 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 247 (1205)
.+++-|+|+.|+||||||..+...... .-..++||+....++.. .++.+|.+... ++..++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~--~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK--QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc--ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 578999999999999999999987653 34678999998877653 34556665432 2345555555555
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.++.+..-++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 556566678999988654
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.063 Score=59.31 Aligned_cols=90 Identities=24% Similarity=0.247 Sum_probs=56.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
..++++++|+.|+||||++..++.....++ ..+.++++... ....+-++..++.++.+.....+..+. ....+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL-~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAEL-EEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHH-HHHHHHHH
Confidence 357899999999999999999998765332 35677777643 233445566777777654333233333 33333343
Q ss_pred c-CCeEEEEEccccc
Q 000975 251 K-KKRVLVILDDIWT 264 (1205)
Q Consensus 251 ~-~k~~LlVlDdv~~ 264 (1205)
. +..=+|++|-+-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 2446788887644
No 294
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.72 E-value=0.036 Score=61.25 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=41.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
..++.|+|.+|+||||+|..++...... ..-..++|++....+...++ .++++.++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 5789999999999999999988643221 11236799998887777664 4566666554
No 295
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.00062 Score=69.21 Aligned_cols=106 Identities=28% Similarity=0.381 Sum_probs=61.4
Q ss_pred CcCCcEEEccCCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccCh-hhhcCCCCCCEEEc
Q 000975 581 LINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKP-EVISRLSRLNELYM 659 (1205)
Q Consensus 581 L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~-~~l~~L~~L~~L~l 659 (1205)
+.+.+.|+..+|.+++++...+++.|++|.|+-|+|+.|- .+..+++|+.|+|..|. +.++.. ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 4455666666666666666666677777777777666663 35666777777776643 444432 22556777777777
Q ss_pred cCCcCccccCCCccchHhhccCCCCcEEEE
Q 000975 660 GNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (1205)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l 689 (1205)
..|....-.|. .-...-|.-|++|+.|+-
T Consensus 96 ~ENPCc~~ag~-nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAGQ-NYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccch-hHHHHHHHHcccchhccC
Confidence 66654322111 112234566666666654
No 296
>PTZ00494 tuzin-like protein; Provisional
Probab=95.71 E-value=0.49 Score=52.58 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=98.0
Q ss_pred cCCccccCCChHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~---~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
+.....++.|+.+-..+-+.|. ...++++.+.|.-|.||++|.+........ ..++|++.... +.++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHH
Confidence 3445567888887666666664 345789999999999999999988876542 35788888764 467788
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHH------cCCeEEEEEcccccccccccc---cCCCCCCCccccCCCCCeEEEEec
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALK------KKKRVLVILDDIWTQINLDDI---GIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~------~~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
.+.++.+..+. --+..+.+-+... .++.-+||+- ..+...+... ...+.. ...-|.|++--
T Consensus 439 VKALgV~nve~--CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLac-------DrRlCHvv~EV 508 (664)
T PTZ00494 439 VRALGVSNVEV--CGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVS-------DCQACHIVLAV 508 (664)
T ss_pred HHHhCCCChhh--hccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHc-------cchhheeeeec
Confidence 99998875432 1112222222221 2445555553 1111111110 001111 34556676644
Q ss_pred CchhHH--hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 296 RDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 296 r~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
--+.+. ....+.-..|-+++|+.++|.++..+..
T Consensus 509 plESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 509 PMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 333222 2234556789999999999999887765
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.074 Score=60.07 Aligned_cols=90 Identities=21% Similarity=0.173 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA 248 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 248 (1205)
..++|.++|+.|+||||.+.+++...... .+-..+..+++... ....+-++..++.++.+........+....+ ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L-~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI-TQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH-HH
Confidence 35789999999999999999999876532 12235566666542 2233346666777777654432333322222 22
Q ss_pred HHcCCeEEEEEccccc
Q 000975 249 LKKKKRVLVILDDIWT 264 (1205)
Q Consensus 249 l~~~k~~LlVlDdv~~ 264 (1205)
+ .+.-++++|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 2 3456888997744
No 298
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.70 E-value=0.077 Score=57.28 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCC---CCCHHHH-HHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVR---PDSLVEK-ANQL 245 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~-~~~l 245 (1205)
.+.++|.++|++|+||||.+.+++.....+ -..+.++++... ....+-++..++..+.+... ..+.... ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 346789999999999999999999877532 245677766532 11223344455665544211 1122222 2233
Q ss_pred HHHHHcCCeEEEEEccccc
Q 000975 246 RQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 246 ~~~l~~~k~~LlVlDdv~~ 264 (1205)
..... ...=++++|-.-.
T Consensus 148 ~~~~~-~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKA-RNIDVVLIDTAGR 165 (272)
T ss_pred HHHHH-CCCCEEEEeCCCC
Confidence 33222 3445778886543
No 299
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.055 Score=54.86 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=57.8
Q ss_pred cCCccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 148 VRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..-+.++.|=.++++++.+... -+..+-|.++|++|+|||-+|++|+++.. ..| +.|-.
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acf-----irvig- 244 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACF-----IRVIG- 244 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceE-----Eeehh-
Confidence 3344556677777777776553 12345688999999999999999999764 223 22211
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccc
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
.++.+..-. .....+.++.+.-+..|-++|++|+++-
T Consensus 245 -------selvqkyvg------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 -------SELVQKYVG------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -------HHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 111111100 1223344555544556889999998864
No 300
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.68 E-value=0.038 Score=58.16 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
..++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 578999999999999999999987652 234678887765543
No 301
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.049 Score=59.64 Aligned_cols=87 Identities=28% Similarity=0.298 Sum_probs=61.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 251 (1205)
-.+|.|-|-+|+|||||..+++.+...+. .++||+-.+. ..++ +--++.++.+..... -.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999987443 6788765543 3333 445667776543221 123345667777777
Q ss_pred CCeEEEEEcccccc
Q 000975 252 KKRVLVILDDIWTQ 265 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~ 265 (1205)
.++-++|+|-++..
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 79999999988764
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.65 E-value=0.07 Score=56.79 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------------------
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR------------------ 234 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------ 234 (1205)
..++.|+|.+|+|||++|.++...... .=..++|++..+. ..++.+.+ ++++.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 568999999999999999999766432 2457899988754 34555543 334332211
Q ss_pred --CCCHHHHHHHHHHHHHcCCeEEEEEcccc
Q 000975 235 --PDSLVEKANQLRQALKKKKRVLVILDDIW 263 (1205)
Q Consensus 235 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 263 (1205)
.....+....+.+.+.+.+.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01224455566666654456689999876
No 303
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0055 Score=37.05 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=14.5
Q ss_pred cCcEEEcccCCCCccchhccC
Q 000975 605 KLEILSFRNSHIEQLPEQIGN 625 (1205)
Q Consensus 605 ~L~~L~L~~~~l~~lp~~i~~ 625 (1205)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 304
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00091 Score=68.06 Aligned_cols=99 Identities=25% Similarity=0.238 Sum_probs=53.6
Q ss_pred CcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEccc
Q 000975 534 TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRN 613 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~ 613 (1205)
.+.+-|++.++.+. . -++..+|+.|.||.||-|.|+.+ ..+..+++|+.|.|+.
T Consensus 19 ~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL-----------------------~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL-----------------------APLQRCTRLKELYLRK 72 (388)
T ss_pred HHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc-----------------------hhHHHHHHHHHHHHHh
Confidence 34455555555443 1 23345555555555555555554 4444455555555555
Q ss_pred CCCCccc--hhccCCCccCEEeccCCCCCCccCh----hhhcCCCCCCEEE
Q 000975 614 SHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKP----EVISRLSRLNELY 658 (1205)
Q Consensus 614 ~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~~~----~~l~~L~~L~~L~ 658 (1205)
|.|..+- ..+.+|++|+.|.|..|.....-++ ..+.-|++|+.|+
T Consensus 73 N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 73 NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5544442 2356777777777776654443332 2356677777775
No 305
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.56 E-value=0.066 Score=54.02 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=70.2
Q ss_pred cCCccccCCChHHHHHHHHHh----ccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESL----RDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l----~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
+.+...++|-+...+.+++-- ......-|.+||--|+|||+|++++.+.+..+ .-.. |.|.+.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrL--VEV~k~--------- 122 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRL--VEVDKE--------- 122 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeE--EEEcHH---------
Confidence 345556778777777666543 23344568899999999999999999998732 2222 222221
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHc-CCeEEEEEccccccc---ccccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQI---NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
+....-.+.+.|+. ..||.|..||..-+. ....++..+-.+ +.+.+...++..|.++.
T Consensus 123 --------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~----ve~rP~NVl~YATSNRR 184 (287)
T COG2607 123 --------------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG----VEGRPANVLFYATSNRR 184 (287)
T ss_pred --------------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC----cccCCCeEEEEEecCCc
Confidence 11112233344442 589999999986553 233343333221 11345556666666553
No 306
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.053 Score=54.52 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=56.8
Q ss_pred CccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.+.++.|-|-.++++.+... -+..+-|.++|++|.|||-||++|+++.. ..| +.|-.
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~f-----irvvg--- 222 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF-----IRVVG--- 222 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hhe-----eeecc---
Confidence 34456666666666665543 13456688999999999999999999865 333 22211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.+..+ +.+|.. ...+..+.+.-+++.+..|++|+++..
T Consensus 223 -sefvq---kylgeg-------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 223 -SEFVQ---KYLGEG-------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred -HHHHH---HHhccC-------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 11111 122211 122344444445578889999988753
No 307
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.0021 Score=62.75 Aligned_cols=90 Identities=18% Similarity=0.338 Sum_probs=65.3
Q ss_pred CccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcc
Q 000975 975 QLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNL 1054 (1205)
Q Consensus 975 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l 1054 (1205)
.++.++-++| .+... ....+..+++++.|.+.+|..+.+..... +....++|+.|+|++|+.+++-....+
T Consensus 102 ~IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred eEEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHH-------hcccccchheeeccCCCeechhHHHHH
Confidence 4666777664 44433 22345667888888899998887664311 223589999999999999999877778
Q ss_pred cCCCCcceeeeccCccccc
Q 000975 1055 VELPSLRQLSINFCPELKR 1073 (1205)
Q Consensus 1055 ~~l~~L~~L~i~~C~~L~~ 1073 (1205)
..+++|+.|.|.+-|....
T Consensus 173 ~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHhhhhHHHHhcCchhhhc
Confidence 8899999999998666544
No 308
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.51 E-value=0.041 Score=52.21 Aligned_cols=104 Identities=18% Similarity=0.309 Sum_probs=42.8
Q ss_pred ChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccCCCCccch-hccCC
Q 000975 551 PNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNL 626 (1205)
Q Consensus 551 ~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L 626 (1205)
+...|.++.+|+.+.+.. .+..++. .|.++.+|+.+.+.++ +.. -..|.++.+|+.+.+.+ .+..++. .+...
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344455555555555553 3444432 2555555555555543 333 24455555566666644 3444432 24446
Q ss_pred CccCEEeccCCCCCCccChhhhcCCCCCCEEEcc
Q 000975 627 TRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMG 660 (1205)
Q Consensus 627 ~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~ 660 (1205)
++|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 66666666441 445555555555 66666554
No 309
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.50 E-value=0.017 Score=66.65 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=41.5
Q ss_pred ccccCCChHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 151 YVHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.+++|-++.+++|++.+. +...+++.++|++|+||||||+.+++-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3467899999999999883 45668999999999999999999999765
No 310
>PTZ00035 Rad51 protein; Provisional
Probab=95.49 E-value=0.067 Score=59.69 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh----cCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK----EDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 239 (1205)
..++.|+|.+|+||||++..++..... ...-..++|++....+..+++ .++++.++..... ..+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHH
Confidence 568899999999999999988765431 112346789998887777664 5566666554311 11222
Q ss_pred HHHH---HHHHHHHcCCeEEEEEccccc
Q 000975 240 EKAN---QLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 240 ~~~~---~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
+... .+.+.+.+.+--|||+|-+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 2222 223333334556888887654
No 311
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.37 Score=52.62 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=91.3
Q ss_pred HHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHH--------hhcCCCcEEEEEEe-cCCCCHHHHHHHHHHHhCC
Q 000975 161 FQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQV--------VKEDLFDVVVDAEV-THTPDWKEICGRIADQLGL 230 (1205)
Q Consensus 161 ~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 230 (1205)
++.+...+..++ .++..++|..|.||+++|..+.+.. ....|.+-+.+++. +....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344455554444 4567799999999999999999886 22223323344432 2223333332 33333322
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEEecCc-hhHHhhcCCC
Q 000975 231 EIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASRD-QHVLRINMSN 307 (1205)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~-~~v~~~~~~~ 307 (1205)
... ..+++=++|+||++.... ..++...+-. ....+.+|++|.+ ..+...-...
T Consensus 84 ~~~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-------Pp~~t~~il~~~~~~kll~TI~SR 140 (299)
T PRK07132 84 SSF----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEE-------PPKDTYFLLTTKNINKVLPTIVSR 140 (299)
T ss_pred CCc----------------ccCCceEEEEecccccCHHHHHHHHHHhhC-------CCCCeEEEEEeCChHhChHHHHhC
Confidence 211 113666788898866532 3333222222 2345566655543 3333312455
Q ss_pred CceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 308 PRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 308 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
...+++.++++++..+.+... +. + ++.+..++...+|.--|+..
T Consensus 141 c~~~~f~~l~~~~l~~~l~~~-~~---~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 141 CQVFNVKEPDQQKILAKLLSK-NK---E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred eEEEECCCCCHHHHHHHHHHc-CC---C---hhHHHHHHHHcCCHHHHHHH
Confidence 678999999999998877664 21 1 23355666666663344444
No 312
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.49 E-value=0.092 Score=55.54 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
....+|+|.|++|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999988764
No 313
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.48 E-value=0.18 Score=63.10 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=43.4
Q ss_pred CccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 150 GYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
.+..++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++... ..-...+.+++..-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~ 438 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAM 438 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccC
Confidence 34467899888888776665 22334678999999999999999988643 11223455665543
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=95.46 E-value=0.046 Score=58.69 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+.|+|++|+|||+||..++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999987754
No 315
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.45 E-value=0.037 Score=52.53 Aligned_cols=116 Identities=15% Similarity=0.300 Sum_probs=66.1
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcE
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 608 (1205)
++++|+.+.+.. ... .++...|.++..|+.+.+.++ +..++. .+.++.+|+.+.+.. .+.. ...|..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 677888888774 343 678888899999999999885 777754 488888899999976 4433 467778999999
Q ss_pred EEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCC
Q 000975 609 LSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN 655 (1205)
Q Consensus 609 L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~ 655 (1205)
+++..+ +..++. .+.+. +|+.+.+.. .+..++...|.+.++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 999775 667754 46676 899888875 36677777777776663
No 316
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.45 E-value=0.15 Score=46.61 Aligned_cols=44 Identities=11% Similarity=0.349 Sum_probs=32.3
Q ss_pred cCCChHHHHHHHHHhc----c---CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLR----D---SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~----~---~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
++|.+-..+.+++.+. . .+.-|++.+|.+|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4565555555555553 2 345688999999999999999999883
No 317
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.43 E-value=0.025 Score=61.69 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
....++|||++|.|||.+|+.++....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999999976
No 318
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.43 E-value=0.063 Score=52.24 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...++.++|++|.||||+.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3467999999999999999999998753
No 319
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.41 E-value=0.025 Score=64.60 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=39.5
Q ss_pred ccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc
Q 000975 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD 204 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~ 204 (1205)
.++||++.++.+...+..++ -|.|.|++|+|||++|+.+.......+.|.
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 47899999999888876443 477999999999999999998764333443
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.41 E-value=0.017 Score=59.36 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (1205)
..|.|+|+.|+||||++..+..... ......+++--... ..... ...+..+-.... ......+.+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~----~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIEDPIEFVHES-KRSLINQREVGL----DTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcCCccccccC-ccceeeecccCC----CccCHHHHHHHHhcC-
Confidence 4689999999999999998887764 22333444322211 10000 001111111110 111223445555654
Q ss_pred CeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHH
Q 000975 253 KRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (1205)
Q Consensus 253 k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~ 301 (1205)
.+=.|++|++.+.+.+...... ...|..|+.|+-...+.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~----------a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA----------AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH----------HHcCCEEEEEecCCcHH
Confidence 4568999999877654432111 12344577777655543
No 321
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.40 E-value=0.083 Score=58.51 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=30.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
...+.++|.+|+|||.||..+++....+ -..++|+++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH
Confidence 3679999999999999999999987633 2356777653
No 322
>PRK06547 hypothetical protein; Provisional
Probab=95.39 E-value=0.022 Score=56.63 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 163 ~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566778999999999999999999998743
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.38 E-value=0.048 Score=61.55 Aligned_cols=88 Identities=26% Similarity=0.247 Sum_probs=54.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 251 (1205)
..++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ +.-++.++....... ........+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999876532 346788876543 3333 233455655432210 001123445555554
Q ss_pred CCeEEEEEcccccc
Q 000975 252 KKRVLVILDDIWTQ 265 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~ 265 (1205)
.+.-++|+|.+...
T Consensus 157 ~~~~lVVIDSIq~l 170 (372)
T cd01121 157 LKPDLVIIDSIQTV 170 (372)
T ss_pred cCCcEEEEcchHHh
Confidence 56778999988653
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.33 E-value=0.088 Score=55.48 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGL 230 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (1205)
..++.|.|.+|+||||+|.+++.....++ ..+++++... +..++.+.+ ++++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 45899999999999999877766553222 3457776433 445666655 34443
No 325
>PRK04328 hypothetical protein; Provisional
Probab=95.32 E-value=0.07 Score=57.10 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=32.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
...++.|.|.+|+|||++|.++..... ..-..++|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCCH
Confidence 356899999999999999999877643 224567898877643
No 326
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.29 E-value=0.078 Score=57.11 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..++.|.|.+|+|||++|.+++..... .-..++|++....
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCC
Confidence 468999999999999999998776542 2346788888643
No 327
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.28 E-value=0.24 Score=54.08 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=41.9
Q ss_pred ccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHH
Q 000975 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (1205)
.|+=+.+....++.++.. .+.|.|.|++|+||||+|+.++.... ..| +.|..+...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~--~~~---~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLN--WPC---VRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHC--CCe---EEEEecCCCChhhc
Confidence 444455566667777753 24588999999999999999999875 322 45555555544444
No 328
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.28 E-value=0.15 Score=61.73 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 149 RGYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
.....++|+...++++.+.+. ......|.|+|..|+|||++|+.+++.... .-...+.|++..-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCC
Confidence 345578899998888888775 223345779999999999999999986431 1122355665543
No 329
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.17 E-value=0.051 Score=55.58 Aligned_cols=37 Identities=19% Similarity=0.059 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+.|.|++|+|||++|.+++..... .=..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--CCCcEEEEECCCC
Confidence 679999999999999998877642 2245788877553
No 330
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.17 E-value=0.1 Score=53.64 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCC--------cEEEEEEecCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLF--------DVVVDAEVTHT 214 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 214 (1205)
.++.|+|++|+||||++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 578999999999999999999887643333 36888887765
No 331
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.16 E-value=0.14 Score=52.60 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=42.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE-------ecCCCCHHHH--HHHHHHHhCCCCCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE-------VTHTPDWKEI--CGRIADQLGLEIVRP 235 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~~~~ 235 (1205)
....|.++||+|+||||..++++.+...++....++-.+ ..-+.++++. ++..+++.+..+++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 345788999999999999999999877544333333322 1223355543 457788887776654
No 332
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.027 Score=53.11 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEI 232 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 232 (1205)
+|+|-|++|+||||+|+.++++..-. .| +.-.++++|++..|+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999997521 11 22367889998888764
No 333
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.06 E-value=0.098 Score=54.63 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
+|+|.|.+|+||||+|+.+.........-..+..++.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111234556655544
No 334
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.06 E-value=0.018 Score=54.70 Aligned_cols=22 Identities=45% Similarity=0.780 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 000975 176 IGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
|+|.|++|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 335
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.05 E-value=0.1 Score=56.39 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
....+|+|.|..|+||||+|+.+..-......-..+..++.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 346789999999999999998887665421111235555555544
No 336
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.02 E-value=0.23 Score=62.18 Aligned_cols=183 Identities=15% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh-hc-C------------CCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV-KE-D------------LFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD 236 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~-~~-~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 236 (1205)
.+.+++.|+|+.+.||||+.+.+.-..- .+ + .|+ .++..++...++..-...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStf------------ 391 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTF------------ 391 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHH------------
Confidence 4457899999999999999998875421 00 1 112 2233333333222211111
Q ss_pred CHHHHHHHHHHHHHc-CCeEEEEEcccccccccc---cccCCCCCCCccccCCCCCeEEEEecCchhHHhhcCCCCc--e
Q 000975 237 SLVEKANQLRQALKK-KKRVLVILDDIWTQINLD---DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPR--I 310 (1205)
Q Consensus 237 ~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~~~~~~~--~ 310 (1205)
......+...+.. .++-|+++|+.....+.. .+...+ ..++ ...|+.+|+||....+......... .
T Consensus 392 --S~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~ai----le~l-~~~~~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 392 --SGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISI----LEYL-RKRGAKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred --HHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHH----HHHH-HHCCCEEEEECChHHHHHHHhcCCCeEE
Confidence 1112222222221 467899999987653321 121110 0111 2357899999999887753222222 1
Q ss_pred EEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 000975 311 FSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINWLRK 380 (1205)
Q Consensus 311 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~ 380 (1205)
..+. ++.+.-.-.++-..|.. ....|-.|++++ |+|-.|.--|..+-......++.+++.+..
T Consensus 465 ~~~~-~d~~~l~~~Ykl~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 465 ASVE-FDEETLRPTYRLLIGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EEEE-EecCcCcEEEEEeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2221 11111000111111221 134567888877 788888877777766666677777776654
No 337
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.00 E-value=0.23 Score=55.41 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 155 PSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 155 ~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+|+...++++.+.+. ......|.|+|..|+||+++|+.+++..
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 566666777766665 2223457899999999999999998754
No 338
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.3 Score=54.24 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc---------------------CCCcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE---------------------DLFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
...+.++|+.|+||||+|+.++...--. .|.|. +++.-..... .-+..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~-~~~~p~~~~~----------~~g~~ 89 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDF-YEITPLSDEP----------ENGRK 89 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEEecccccc----------ccccc
Confidence 4568899999999999999999875310 11221 2221110000 00000
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CCeEEEEEcccccccc--cccccCCCCCCCccccCCCCCeEEEEecCchh-HHhhc
Q 000975 232 IVRPDSLVEKANQLRQALKK----KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VLRIN 304 (1205)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-v~~~~ 304 (1205)
. ..-..+.++.+.+.+.. +++-++|+|++...+. ...+...+-. ...++.+|++|.+.. +...-
T Consensus 90 -~-~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-------p~~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 90 -L-LQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-------PPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred -C-CCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-------CcCCCEEEEEeCChHhChHHH
Confidence 0 00112333344444431 3444556687776532 1222111111 113455666666654 33322
Q ss_pred CCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 305 MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 305 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
......+.+.+++.+++.+.+.+. |. ... . ..+..++|.|+.
T Consensus 161 ~SRc~~~~~~~~~~~~~~~~L~~~-~~---~~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRER-GV---AEP--E---ERLAFHSGAPLF 202 (325)
T ss_pred HHHhhhhcCCCCCHHHHHHHHHhc-CC---CcH--H---HHHHHhCCChhh
Confidence 344568899999999998888654 21 111 1 113568898954
No 339
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.00 E-value=2.5 Score=47.42 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=42.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec-CCCCHHHHHHHHHHHhCCCCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT-HTPDWKEICGRIADQLGLEIVR 234 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~ 234 (1205)
.+.||-.+|.-|.||||-|-++++..+.++ + .+.-|.+. ..+...+-++.++++.+.+.-+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 457899999999999999999999987522 2 23333332 2344556667888888776543
No 340
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.98 E-value=0.084 Score=60.92 Aligned_cols=87 Identities=21% Similarity=0.149 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
.++++++|++|+||||++.+++........-..+..|+....- ...+-++...+.++.+........+....+. .+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~-~~-- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE-QL-- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH-Hh--
Confidence 3689999999999999999988776511223456777765421 1223344445556655433323333333332 22
Q ss_pred CCeEEEEEccc
Q 000975 252 KKRVLVILDDI 262 (1205)
Q Consensus 252 ~k~~LlVlDdv 262 (1205)
...=+||+|..
T Consensus 298 ~~~DlVlIDt~ 308 (424)
T PRK05703 298 RDCDVILIDTA 308 (424)
T ss_pred CCCCEEEEeCC
Confidence 23467888965
No 341
>PRK07667 uridine kinase; Provisional
Probab=94.97 E-value=0.052 Score=55.59 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=29.5
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 162 QKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 162 ~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
+.+.+.+. .....+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 334579999999999999999999998763
No 342
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.96 E-value=0.015 Score=60.48 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 378999999999999999999854
No 343
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.94 E-value=0.023 Score=46.74 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 344
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.94 E-value=0.21 Score=55.51 Aligned_cols=100 Identities=25% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCCC
Q 000975 161 FQKMMESLRDS----NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRP 235 (1205)
Q Consensus 161 ~~~l~~~l~~~----~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~ 235 (1205)
...+..++.++ +.++|++||+.|+||||-..+++..+.-...-..+..|+.... ....+-++..++-++.+....
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV 266 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe
Confidence 44444454433 3789999999999997655555555431222345666665532 344555566777778776655
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEEcccc
Q 000975 236 DSLVEKANQLRQALKKKKRVLVILDDIW 263 (1205)
Q Consensus 236 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 263 (1205)
.+..+....+ ..+. ..=+|.+|-+.
T Consensus 267 ~~~~el~~ai-~~l~--~~d~ILVDTaG 291 (407)
T COG1419 267 YSPKELAEAI-EALR--DCDVILVDTAG 291 (407)
T ss_pred cCHHHHHHHH-HHhh--cCCEEEEeCCC
Confidence 4444444333 2333 22455667553
No 345
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.92 E-value=0.044 Score=57.99 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------------C---
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------------R--- 234 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~--- 234 (1205)
..++.|.|.+|+|||++|.+++.....+ .=+.++|++..+.+ .++.+.+. .++.+.. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 4689999999999999999877665422 02467888876653 44444432 3332110 0
Q ss_pred --CCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 235 --PDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 235 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
..+..+....+.+.+.+.+...+|+|.+...
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1244555666666665545578899987554
No 346
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.11 Score=50.88 Aligned_cols=25 Identities=44% Similarity=0.499 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+.|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999886
No 347
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.90 E-value=0.07 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998763
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.047 Score=54.55 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999954
No 349
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.86 E-value=0.011 Score=35.67 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=13.9
Q ss_pred ceeEEEeeCCCCCCcccccCC
Q 000975 560 ELLVLHLTGIHFPSLPLSLGS 580 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~~i~~ 580 (1205)
+|++|||++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777766666554
No 350
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.83 E-value=0.072 Score=55.20 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=39.1
Q ss_pred HHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH
Q 000975 160 VFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 160 ~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (1205)
...++++.+. ..+..+|+|.|++|+|||||.-.+...++.+++=-.++=|+=|.+++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4556666665 346789999999999999999999999886555455666665655543
No 351
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.80 E-value=0.1 Score=63.69 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=59.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 247 (1205)
.+++-|+|.+|+||||||..++..... .-..++|++....++. ..++.+|.+... ....++....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~--~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 578889999999999999887766542 2356799998887764 367777775431 2244444555555
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.+.+++.-+||+|-+...
T Consensus 133 lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 133 LIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HhhcCCCeEEEEcchhhh
Confidence 555567789999987643
No 352
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.022 Score=56.67 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=33.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
..+|+|-||-|+||||||+.++++.... +++=.+.+.+=+...+.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999998632 22333444444444544443
No 353
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.79 E-value=0.066 Score=51.60 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=45.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRV 255 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~ 255 (1205)
|.++|++|+|||++|+.+++... ....-+.++...+..+++...--. .....- .. ..+.+.. .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~--~~----~~l~~a~--~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPS-NGQFEF--KD----GPLVRAM--RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET--TTTTCE--EE-----CCCTTH--HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeec-cccccc--cc----ccccccc--ccee
Confidence 67999999999999999999873 234556777777777665433211 000000 00 0011111 1788
Q ss_pred EEEEcccccc
Q 000975 256 LVILDDIWTQ 265 (1205)
Q Consensus 256 LlVlDdv~~~ 265 (1205)
++|||++...
T Consensus 68 il~lDEin~a 77 (139)
T PF07728_consen 68 ILVLDEINRA 77 (139)
T ss_dssp EEEESSCGG-
T ss_pred EEEECCcccC
Confidence 9999999854
No 354
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.77 E-value=0.048 Score=65.13 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=42.0
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..|..+..++|++..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455667789999999998887765555567899999999999999998754
No 355
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.76 E-value=0.099 Score=50.90 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 356
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.74 E-value=0.027 Score=57.88 Aligned_cols=25 Identities=48% Similarity=0.675 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999999864
No 357
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.73 E-value=0.046 Score=52.68 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (1205)
..+|.|.|.+|+||||||+.+........ ..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 35899999999999999999999987543 4455554
No 358
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.69 E-value=0.065 Score=61.34 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=33.3
Q ss_pred cCCChHHHHHHHHHhc-------cC---------CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 154 FPSRNPVFQKMMESLR-------DS---------NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.+..++.+...+. .. ..+.|.++|++|+|||++|+.++....
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5788888877654441 00 124688999999999999999987653
No 359
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.65 E-value=0.17 Score=58.66 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..|++++|+.|+||||.+.+++.....+.....+..++... .....+-++...+.++..........+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc-
Confidence 46999999999999999999998775332223455665543 22334445566677666543322222222222 2222
Q ss_pred CCeEEEEEcccc
Q 000975 252 KKRVLVILDDIW 263 (1205)
Q Consensus 252 ~k~~LlVlDdv~ 263 (1205)
.+..+++|-.-
T Consensus 334 -d~d~VLIDTaG 344 (484)
T PRK06995 334 -NKHIVLIDTIG 344 (484)
T ss_pred -CCCeEEeCCCC
Confidence 33467777653
No 360
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.21 Score=56.98 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+|+++|+.|+||||++.+++.........+.+..+.... .....+-+...++.++.+........+.. .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~-~al~~l~- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ-LMLHELR- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH-HHHHHhc-
Confidence 46899999999999999999987653323334444444333 22334445566777777655443433332 2222332
Q ss_pred CCeEEEEEccc
Q 000975 252 KKRVLVILDDI 262 (1205)
Q Consensus 252 ~k~~LlVlDdv 262 (1205)
..-++++|-+
T Consensus 269 -~~d~VLIDTa 278 (420)
T PRK14721 269 -GKHMVLIDTV 278 (420)
T ss_pred -CCCEEEecCC
Confidence 3445677764
No 361
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.63 E-value=0.3 Score=52.39 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 165 MESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 165 ~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+++.+.+..+|.|.|.+|+|||||+..+.+...
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344466788999999999999999999999865
No 362
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.61 E-value=0.98 Score=49.94 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=33.7
Q ss_pred eEEccCCChHhHHHHHHHHhCCCCC--CCchHHHHHHHHHhcCCChHH
Q 000975 310 IFSISTLADGEAKSLFEKIVGDSAK--ESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 310 ~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~i~~~~~glPLa 355 (1205)
++++++++.+|+..++......... ....+...+++.--.+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 7899999999999999988733221 134455666777777999854
No 363
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.61 E-value=0.12 Score=52.06 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...+|+|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999998753
No 364
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.59 E-value=0.25 Score=52.47 Aligned_cols=93 Identities=27% Similarity=0.201 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh--cCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH---
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK--EDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE--- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 240 (1205)
-..++|.|-.|+|||+|+..+.+.... +.+-+.++++-+.+.. +..+++..+.+.=..+. ...+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 346899999999999999998877531 2335788999998764 45666666654322111 01111111
Q ss_pred ---HHHHHHHHHHc--CCeEEEEEcccccc
Q 000975 241 ---KANQLRQALKK--KKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 ---~~~~l~~~l~~--~k~~LlVlDdv~~~ 265 (1205)
..-.+.++++. ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 23345566653 69999999998664
No 365
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.57 E-value=0.035 Score=59.87 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHH
Q 000975 161 FQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVE 240 (1205)
Q Consensus 161 ~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 240 (1205)
...+++.+...+. -|.++|+.|+|||++++........ ..| .+.-+..+...+...+++.+-..+......
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 3455565555544 4679999999999999998865432 111 234455555444444332221111110000
Q ss_pred HHHHHHHHH--HcCCeEEEEEcccccc
Q 000975 241 KANQLRQAL--KKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 ~~~~l~~~l--~~~k~~LlVlDdv~~~ 265 (1205)
.+ ..+|+.++++||+.-+
T Consensus 93 -------~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 -------VYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp -------EEEEESSSEEEEEEETTT-S
T ss_pred -------CCCCCCCcEEEEEecccCCC
Confidence 00 1258889999998654
No 366
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.06 Score=49.88 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=40.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
.+-|.|.|.+|+||||+|..++.... .-|+++++-..-.+++...-+......- +.+...+.+-..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y~c~i~---DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEYKCHIL---DEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccccCccc---cHHHHHHHHHHHHhc
Confidence 45688999999999999999996643 2477777644333333322222211111 334445555555554
No 367
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.56 E-value=0.093 Score=55.13 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=46.0
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 161 FQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 161 ~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
-.+++..+. ..+..+|+|.|.||+|||||.-.+......+++=-.++=|+-|.+++--.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 345555554 4567799999999999999999999999877776677777777776544443
No 368
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.55 E-value=0.078 Score=53.57 Aligned_cols=51 Identities=25% Similarity=0.430 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV 233 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 233 (1205)
.|+|.|-||+||||+|..++.....++- ..++-|++...+++ .+++|.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCCh-------HHhcCCCCC
Confidence 5899999999999999996766654333 35667777777654 455677664
No 369
>PTZ00301 uridine kinase; Provisional
Probab=94.53 E-value=0.034 Score=57.22 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.51 E-value=0.12 Score=55.56 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE---ecCCCCHHHHHHHHH--HHh--CCCCC
Q 000975 162 QKMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE---VTHTPDWKEICGRIA--DQL--GLEIV 233 (1205)
Q Consensus 162 ~~l~~~l~-~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~--~~l--~~~~~ 233 (1205)
+.++..+. ..+..-++|+|+.|.||||+.+.++.... .....+++. +.......++...+. .+. +....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHHHHHHhccccccccccccc
Confidence 33344443 33346789999999999999999998764 223344442 111111223322110 111 00000
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHHh
Q 000975 234 RPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR 302 (1205)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~ 302 (1205)
-.+. ......+...+..-.+-++++|++...+.+..+...+ ..|..||+||-+..+..
T Consensus 176 v~~~-~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----------~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 176 VLDG-CPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----------HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccc-chHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----------hCCCEEEEEechhHHHH
Confidence 0001 1112234444443467789999987665555442221 24678999998776644
No 371
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.48 E-value=0.035 Score=57.88 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 372
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.47 E-value=0.11 Score=50.46 Aligned_cols=117 Identities=19% Similarity=0.161 Sum_probs=61.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC---CCHHHHHHHHH----HHhCCCC--CCCCCH------
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT---PDWKEICGRIA----DQLGLEI--VRPDSL------ 238 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~----~~l~~~~--~~~~~~------ 238 (1205)
..|-|++..|.||||+|...+-+..- +=..+.++-.-+. .....+++.+- .+.+... ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~--~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG--HGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 46889999999999999998887653 2224444433322 23333333320 0001100 001111
Q ss_pred HHHHHHHHHHHHcCCeEEEEEccccccccc-----ccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 239 VEKANQLRQALKKKKRVLVILDDIWTQINL-----DDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 239 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
.+..+..++.+..+.-=|+|||++-..-.+ +++...+.. ...+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-------rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-------KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-------CCCCCEEEEECCCCC
Confidence 112233444444445569999998665222 222222222 345668999999975
No 373
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.47 E-value=0.14 Score=51.94 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=62.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC--CCCHHHHH------HHHHHHhCCCC------CCCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH--TPDWKEIC------GRIADQLGLEI------VRPDS 237 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~------~~i~~~l~~~~------~~~~~ 237 (1205)
...+++|+|..|.|||||++.++.... ...+.+++.-.. ..+..... .++++.++... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 346899999999999999999988643 234444443111 11222211 12455555432 11111
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEccccccccc---ccccCCCCCCCccccCCCCCeEEEEecCchhHH
Q 000975 238 LVEKANQLRQALKKKKRVLVILDDIWTQINL---DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (1205)
Q Consensus 238 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~ 301 (1205)
.....-.+.+.+. ..+-++++|+.-..-+. +.+...+.. +....+..||++|.+....
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~-----~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRR-----LARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHH-----HHHhcCCEEEEEeCCHHHH
Confidence 2222333445555 36778899987654221 111111110 0012256788888877654
No 374
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.46 E-value=0.064 Score=59.97 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=41.5
Q ss_pred cccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 152 VHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..++|+...+.++.+.+. .....-|.|+|..|+||+++|+.++.... ..-...+.+++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~ 68 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCC
Confidence 357788888888887775 22234577999999999999999986432 11123355666653
No 375
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.45 E-value=0.033 Score=54.02 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987653
No 376
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.12 Score=50.78 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
+.|.+.|.+|+||||+|++++...+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46789999999999999999998764
No 377
>PRK05439 pantothenate kinase; Provisional
Probab=94.44 E-value=0.21 Score=54.41 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 345689999999999999999998866421112234455555544
No 378
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.44 E-value=0.077 Score=63.96 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=60.1
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
++.....++|++..++.+...+... +.+.++|++|+||||+|+.+++... ..+++..+|..- ...+...+++.++.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHH
Confidence 3455667889988888877766543 4688999999999999999998754 244677788655 44467777788877
Q ss_pred HhCCC
Q 000975 227 QLGLE 231 (1205)
Q Consensus 227 ~l~~~ 231 (1205)
++|..
T Consensus 102 ~~G~~ 106 (637)
T PRK13765 102 GKGKQ 106 (637)
T ss_pred hcCHH
Confidence 66643
No 379
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.44 E-value=0.21 Score=51.49 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=58.7
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCC-------CCCC
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGL-------EIVR 234 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~ 234 (1205)
.++.+.. .+-..++|.|.+|+|||+|+..+.+... -+.++++.+++. .++.++.+.+...-.. ....
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3455541 1235689999999999999999999864 355688888766 3456666655432111 1111
Q ss_pred CCCHHHH------HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 235 PDSLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 235 ~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
. ..... .-.+.+++. +++++|+++||+...
T Consensus 81 ~-~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 81 E-PPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred h-hHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 1 11111 122333333 379999999998553
No 380
>PRK08233 hypothetical protein; Provisional
Probab=94.42 E-value=0.034 Score=56.58 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 381
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.14 Score=52.84 Aligned_cols=53 Identities=30% Similarity=0.332 Sum_probs=40.7
Q ss_pred cccCCccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|...+.++-|-+..+++|.+...= ...+=|.++|.+|+|||-||++|++.-.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 3445566777888888888887640 1244577999999999999999999865
No 382
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.36 E-value=0.29 Score=59.77 Aligned_cols=88 Identities=23% Similarity=0.186 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
..+|+++|+.|+||||.+.+++...........+..++... .....+-++...+.++.+.....+..+. ....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l-~~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADL-RFALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHH-HHHHHHhc-
Confidence 46999999999999999999998764322223556666543 2234566677777777766443344433 33333343
Q ss_pred CCeEEEEEcccc
Q 000975 252 KKRVLVILDDIW 263 (1205)
Q Consensus 252 ~k~~LlVlDdv~ 263 (1205)
++ =+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 23 478888765
No 383
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.2 Score=58.55 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=60.6
Q ss_pred CccccCCChHHHHHHHHHhc----------cCC---ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLR----------DSN---VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----------~~~---~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
++.++.|-.+.++-+.+.+. ... ..=|.++|++|.|||-||.+++..... -+|+|..+
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP-- 735 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP-- 735 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH--
Confidence 44555565555555555543 111 234889999999999999999987652 25666553
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+++ .+.+| ..++.++.+..+-+.-++|.+++|+.+..
T Consensus 736 --ElL---~KyIG-------aSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 --ELL---SKYIG-------ASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred --HHH---HHHhc-------ccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222 22233 23455666666666679999999998764
No 384
>PRK06762 hypothetical protein; Provisional
Probab=94.33 E-value=0.039 Score=55.11 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 385
>PF13245 AAA_19: Part of AAA domain
Probab=94.30 E-value=0.1 Score=43.60 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.8
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLV-KVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa-~~v~~~~ 197 (1205)
+.+++.|.|++|+|||+++ +.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999555 4444444
No 386
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.15 Score=55.17 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+-|.++|++|+|||-||++|+..-.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 4588999999999999999998865
No 387
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.28 E-value=0.035 Score=50.49 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
|.|+|++|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999998865
No 388
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.28 E-value=0.04 Score=57.26 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
....+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998764
No 389
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.27 E-value=0.04 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+.++|+|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999765
No 390
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.25 E-value=0.28 Score=56.56 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE----- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 240 (1205)
-..++|.|.+|+|||||+.++++....+ +-+.++++-+.+.. .+.++...+...-.... ...++...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 3568999999999999999999887643 67888888887664 45566666654322110 11112211
Q ss_pred -HHHHHHHHHH-c-CCeEEEEEcccccc
Q 000975 241 -KANQLRQALK-K-KKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -~~~~l~~~l~-~-~k~~LlVlDdv~~~ 265 (1205)
.+-.+.++++ + ++++|+++|++-..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 2334555654 2 79999999998654
No 391
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.25 E-value=0.14 Score=53.62 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=69.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-----CCCHHHHHHHHHHHhCCCCCC------CCCHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-----TPDWKEICGRIADQLGLEIVR------PDSLVE 240 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~ 240 (1205)
+..+++|||.+|.||||+|+.+..-.+ - -.+.+++.-.+ .....+-..++++..+..... .-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~--p-t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE--P-TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC--C-CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999998764 2 23334433221 223344556667766644311 101111
Q ss_pred H-HHHHHHHHHcCCeEEEEEccccccccc---ccccCCCCCCCccccCCCCCeEEEEecCchhHHh
Q 000975 241 K-ANQLRQALKKKKRVLVILDDIWTQINL---DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR 302 (1205)
Q Consensus 241 ~-~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~ 302 (1205)
. --.+.+.+. -++-++|.|+.-..-+. ..+...+. .+....|-..++.|-+-.++.
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~-----dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLK-----DLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHH-----HHHHHhCCeEEEEEEEHHhhh
Confidence 1 223444454 58889999986554221 11110000 011345677888888888876
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.25 E-value=0.12 Score=57.82 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=33.3
Q ss_pred cCCChHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 154 FPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.++.++.+.-.+.. ...+-|.++|++|+|||++|+.++....
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777766666544431 1235788999999999999999999875
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.23 E-value=0.39 Score=50.92 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
...+.|.|.+|+||||+|..++.... ..-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 46899999999999999998876543 22457788887543
No 394
>PRK03839 putative kinase; Provisional
Probab=94.23 E-value=0.04 Score=55.90 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 395
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.23 E-value=0.13 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999998765
No 396
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.21 E-value=0.09 Score=50.30 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999999864 4455555666555
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.18 E-value=0.28 Score=55.81 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=56.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCCcEEEE-----------EEec---------CCCCHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE-----DLFDVVVD-----------AEVT---------HTPDWKEICGRIADQ 227 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~-----~~f~~~~w-----------v~~~---------~~~~~~~~~~~i~~~ 227 (1205)
-..|++||+.|+|||||.+-++.+.... .+-..++= .+.+ ......+..+.|+..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 3568999999999999999999875421 11111000 0000 112345667788888
Q ss_pred hCCCCCCCC------CHHHHHHHHHHHHHcCCeEEEEEccccccccc
Q 000975 228 LGLEIVRPD------SLVEKANQLRQALKKKKRVLVILDDIWTQINL 268 (1205)
Q Consensus 228 l~~~~~~~~------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~ 268 (1205)
+|.+..... +..+....+..++.=..+.++|||+--+.-+.
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 887744321 22222333444443357899999987776443
No 398
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.16 E-value=0.15 Score=60.38 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------------CC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------------PD 236 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------~~ 236 (1205)
...++.|.|++|+|||||+.+++.....+ -+.+++++..+. ..++.+.+ +.++.+... ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 35689999999999999999999887532 346777776554 44554443 455543211 11
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEEccccc
Q 000975 237 SLVEKANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 237 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
...+.+..+.+.+.+.+.-.+|+|.+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 2355666777777655666788887654
No 399
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.1 Score=52.38 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+++|+|+.|.|||||.+.++.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999999998753
No 400
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.14 E-value=0.089 Score=60.74 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEE-EEEEecCCC-CHHHHHHHHHHHhCCCC-CCCC----CHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVV-VDAEVTHTP-DWKEICGRIADQLGLEI-VRPD----SLVEKANQL 245 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~----~~~~~~~~l 245 (1205)
-..+.|+|++|+|||||++.+++.... .+-++. +.+-|.+.+ .+.++.+.+-..+-... +... .....+-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999987653 334444 345566554 33333333211111111 1110 011222334
Q ss_pred HHHHH-cCCeEEEEEcccccc
Q 000975 246 RQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 246 ~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
-+++. +++.+||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 44443 479999999998654
No 401
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.046 Score=55.35 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++.+|+|.|.+|+||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999999987
No 402
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.69 Score=50.29 Aligned_cols=30 Identities=40% Similarity=0.497 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF 203 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f 203 (1205)
..+-|.++|++|.|||-+|++++.+.. ..|
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag--a~f 155 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG--ANF 155 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC--CCc
Confidence 345688999999999999999999876 445
No 403
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.06 E-value=0.2 Score=52.63 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred cCCChHHHHHHHHHhc-------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-CCcEE-EEEEecCCCCHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLR-------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-LFDVV-VDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-~f~~~-~wv~~~~~~~~~~~~~~i 224 (1205)
+.|..-..+.++..+. ..+.=|++.+|.+|+||.-.|+.+++.....+ +-+.| .++..-+-++...+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie--- 160 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE--- 160 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH---
Confidence 4566666666666664 23455899999999999999999998754221 11111 111111111111110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+-.++....++.....-+|-++|+|+|+..
T Consensus 161 -----------~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 161 -----------DYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -----------HHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 011233444555555568999999999875
No 404
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.05 E-value=0.1 Score=51.81 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=59.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL 249 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 249 (1205)
...+++|+|+.|.|||||.+.++.... ...+.+++.-... .+..+.. .+.++.-.. ........-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEEe-cCHHHHHHHHHHHHH
Confidence 346899999999999999999987643 3445555532211 1111111 111111111 112223333444555
Q ss_pred HcCCeEEEEEcccccccc---cccccCCCCCCCccccCCCCCeEEEEecCchhHH
Q 000975 250 KKKKRVLVILDDIWTQIN---LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (1205)
Q Consensus 250 ~~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~ 301 (1205)
. .++-++++|+.-..-+ .+.+...+.. + ...+..||++|.+....
T Consensus 98 ~-~~p~illlDEP~~~LD~~~~~~l~~~l~~-----~-~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 A-RNARLLILDEPTAALTPAEVERLFKVIRR-----L-RAQGVAVIFISHRLDEV 145 (163)
T ss_pred h-cCCCEEEEECCCcCCCHHHHHHHHHHHHH-----H-HHCCCEEEEEeCCHHHH
Confidence 5 3667888998765422 1111111111 0 12356788888887644
No 405
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.02 E-value=0.16 Score=49.18 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=55.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (1205)
...+++|+|..|.|||||++.+..... ...+.+|+.-.. .++.-.. ........-.+.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhc
Confidence 346899999999999999999987653 234445443110 0000000 11122223334455553
Q ss_pred CCeEEEEEcccccccc---cccccCCCCCCCccccCCCCCeEEEEecCchhHHh
Q 000975 252 KKRVLVILDDIWTQIN---LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR 302 (1205)
Q Consensus 252 ~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~ 302 (1205)
++-++++|+....-+ ...+...+.. . +..||++|.+.....
T Consensus 88 -~p~illlDEP~~~LD~~~~~~l~~~l~~--------~-~~til~~th~~~~~~ 131 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEALEEALKE--------Y-PGTVILVSHDRYFLD 131 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHHHHHHHHH--------c-CCEEEEEECCHHHHH
Confidence 666889998765422 1222111111 1 246888888776553
No 406
>PRK05973 replicative DNA helicase; Provisional
Probab=94.01 E-value=0.35 Score=50.55 Aligned_cols=48 Identities=23% Similarity=0.120 Sum_probs=34.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..++.|.|.+|+|||++|.+++.....+ -..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 4678999999999999999998776432 345777776664 34444443
No 407
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.01 E-value=0.14 Score=61.28 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=44.9
Q ss_pred ccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 151 YVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
...++|+...++++.+.+. ......|.|+|..|+|||++|+.+++... ..-...+.|++..-.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALP 250 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCC
Confidence 3457899888888888776 23345678999999999999999998743 122234566666543
No 408
>PRK00625 shikimate kinase; Provisional
Probab=94.01 E-value=0.044 Score=54.54 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.++||+|+||||+|+.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988864
No 409
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.01 E-value=0.14 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+++|+|+.|.|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46799999999999999999998653
No 410
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.99 E-value=0.11 Score=60.64 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 251 (1205)
..++.|.|.+|+|||||+.+++..... .-..++|++..+. ..++. .-++.++.+..... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 458999999999999999999987652 2346788886543 33332 22555654322100 000113344444544
Q ss_pred CCeEEEEEccccc
Q 000975 252 KKRVLVILDDIWT 264 (1205)
Q Consensus 252 ~k~~LlVlDdv~~ 264 (1205)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4566888897754
No 411
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.97 E-value=0.15 Score=55.14 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
...+++.|+|.+|+|||++|.++..... .....++||+..+.+ .++.+...+ ++.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d 76 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESP--EELLENARS-FGWD 76 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCH--HHHHHHHHH-cCCC
Confidence 3467999999999999999999998876 447889999988753 444444433 5543
No 412
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.94 E-value=0.33 Score=55.54 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=60.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE----- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 240 (1205)
-..++|.|.+|+|||+|+.++...... .+-+.++|+-+.+.. ...++.+.+...-..+. ...++...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 356899999999999999999887542 345788899887765 45566666554321110 01111211
Q ss_pred -HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 241 -KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
.+-.+.++++ +++++|+++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2344566665 379999999998764
No 413
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.92 E-value=0.37 Score=52.64 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=36.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (1205)
..++.|.|.+|+||||+|.+++..... .+-..++|++.... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEcccC--HHHHHHHHHHH
Confidence 457889999999999999999887642 22356888887663 34555555443
No 414
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.92 E-value=0.035 Score=50.86 Aligned_cols=27 Identities=48% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCc
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFD 204 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~ 204 (1205)
|.|+|.+|+||||+|+.++.... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Ccee
Confidence 57999999999999999999865 5554
No 415
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.86 E-value=0.41 Score=55.00 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=59.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE----- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 240 (1205)
-..++|.|.+|+|||||+.+++....... -+.++++-+.+.. .+.+++..+...-.... ....+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999988765422 3577888887664 45666666654322210 01111211
Q ss_pred -HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 241 -KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
..-.+.++++ +++++|+++|++-..
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2334555663 479999999998764
No 416
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.86 E-value=0.92 Score=48.91 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 160 VFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 160 ~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.-+.+...+..+. .....++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 3456666666544 45678999999999999999987653
No 417
>PRK04040 adenylate kinase; Provisional
Probab=93.84 E-value=0.054 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998863
No 418
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.83 E-value=0.12 Score=58.95 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 159 PVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 159 ~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
..++.+++.+.......+.|.|.||+|||++.+.+.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 34566666666566678999999999999999999998764
No 419
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.80 E-value=0.45 Score=54.42 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE----- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 240 (1205)
-..++|.|.+|+|||||+.++...... .+-+.++++-+.+.. .+.+++..+...-.... ...++...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999987653 234577888887664 45666666654322111 11112222
Q ss_pred -HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 241 -KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
.+-.+.++++ +++++|+|+||+-..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2334556664 368999999998765
No 420
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.77 E-value=0.5 Score=52.25 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=29.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
...+++++|++|+||||++..++...+.++ ..+..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEecC
Confidence 457999999999999999999998876432 244555543
No 421
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.73 E-value=0.12 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
++++|+|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999999999998655
No 422
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.72 E-value=0.11 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 000975 176 IGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.66 E-value=0.22 Score=49.39 Aligned_cols=82 Identities=22% Similarity=0.165 Sum_probs=47.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcC-Ce
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK-KR 254 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-k~ 254 (1205)
+.|.|.+|+|||++|.++.... ...++++.-.+..+. ++.+.|.+.-......- ...+....+.+.+.+. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w-~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHW-RTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCc-eEeecHHHHHHHHHhcCCC
Confidence 6799999999999999997651 235667766666554 34445444322222111 2223334455555332 33
Q ss_pred EEEEEccccc
Q 000975 255 VLVILDDIWT 264 (1205)
Q Consensus 255 ~LlVlDdv~~ 264 (1205)
-.+++|.+..
T Consensus 75 ~~VLIDclt~ 84 (169)
T cd00544 75 DVVLIDCLTL 84 (169)
T ss_pred CEEEEEcHhH
Confidence 4789998643
No 424
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.63 E-value=0.12 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
|.|.|++|+||||+|+.++..+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998864
No 425
>PRK14529 adenylate kinase; Provisional
Probab=93.63 E-value=0.22 Score=51.70 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCcE--EEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDV--VVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
|.|.|++|+||||+|+.++..+.. .+.+. .+.-.+.......+..+.++..-. ....+-....+.+++.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhccC
Confidence 789999999999999999988763 22211 111122222223333344443211 1123334555666665422
Q ss_pred eEEEEEccccc
Q 000975 254 RVLVILDDIWT 264 (1205)
Q Consensus 254 ~~LlVlDdv~~ 264 (1205)
..=+|||..-.
T Consensus 77 ~~g~iLDGfPR 87 (223)
T PRK14529 77 KNGWLLDGFPR 87 (223)
T ss_pred CCcEEEeCCCC
Confidence 34478998644
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.61 E-value=0.084 Score=53.66 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=31.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
.++|.|+|+.|+|||||++++..... ..|..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeeccc
Confidence 47899999999999999999999876 667665665544
No 427
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.057 Score=51.87 Aligned_cols=20 Identities=45% Similarity=0.757 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVA 194 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~ 194 (1205)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 428
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.60 E-value=0.32 Score=51.91 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=33.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCC----------cEEEEEEecCCC-CHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLF----------DVVVDAEVTHTP-DWKEICGRIADQL 228 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f----------~~~~wv~~~~~~-~~~~~~~~i~~~l 228 (1205)
+..|+|++|+|||+||..++........| ..+++++..... .+.+-+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 56799999999999999998875432211 235566655443 2344444454444
No 429
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.59 E-value=0.16 Score=59.14 Aligned_cols=87 Identities=24% Similarity=0.195 Sum_probs=50.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHc
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALKK 251 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 251 (1205)
..++.|.|.+|+|||||+..++...... -..++|++..+. ..++. .-++.++....... ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~-~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIK-MRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHH-HHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4689999999999999999998776532 235788876543 33332 22344443321100 000113444455544
Q ss_pred CCeEEEEEccccc
Q 000975 252 KKRVLVILDDIWT 264 (1205)
Q Consensus 252 ~k~~LlVlDdv~~ 264 (1205)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 4566788887754
No 430
>PRK13768 GTPase; Provisional
Probab=93.58 E-value=0.3 Score=52.30 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
.++.|.|+||+||||++..+......++ ..++.++..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEECC
Confidence 5789999999999999999998876433 244555543
No 431
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.58 E-value=0.62 Score=51.56 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=35.1
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 161 FQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 161 ~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
...+++.+. .....+|+|.|.+|+||||++..+....+.++. .+.-+.+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~--~v~vi~~Dp 94 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGH--KVAVLAVDP 94 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEEeCC
Confidence 344555543 345679999999999999999999888774333 334444433
No 432
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.55 E-value=0.081 Score=52.16 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4578999999999999999999988764
No 433
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.17 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.--+-+|-|+.|+||||||..+..+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998765
No 434
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.50 E-value=0.46 Score=56.47 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=37.1
Q ss_pred ccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 151 YVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+..++|....++++.+.+. ......|.|.|..|+||+.+|+.+++..
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 4457898888888887775 2333567899999999999999999764
No 435
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.49 E-value=0.36 Score=54.93 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=54.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE----- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 240 (1205)
...++|+|..|+|||||++.++... ..+.++.+-+.+.. .+.++...++..-+... ...++...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998643 23566777777664 34555555543322111 01111211
Q ss_pred -HHHHHHHHHH-cCCeEEEEEcccccc
Q 000975 241 -KANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
.+-.+.++++ +++++|+++||+-..
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1233445553 479999999998664
No 436
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.48 E-value=0.072 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999864
No 437
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.34 E-value=0.14 Score=56.01 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=38.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.+++.+.|.||+||||+|.+.+-.....+ ..++=|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777665433 44888888888777776554
No 438
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.024 Score=55.72 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=43.1
Q ss_pred cccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchh
Q 000975 799 IFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILR 872 (1205)
Q Consensus 799 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 872 (1205)
.+++++.|.+.+|.++..|+...+. +..|+|+.|+|++|+.+++-. ...+..+++|+.|.|.+.+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 3555666666666666666644333 356778888888887777642 2345667777777777755443
No 439
>PF13479 AAA_24: AAA domain
Probab=93.33 E-value=0.23 Score=51.77 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 35789999999999999665 45677777655
No 440
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.32 E-value=0.35 Score=50.87 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
+|+|.|.+|+||||+|+.+.+..+..+ ..+..++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D 36 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGD 36 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEecc
Confidence 589999999999999999998876432 224445444
No 441
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.30 E-value=0.24 Score=56.39 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=33.2
Q ss_pred cCCChHHHHHHHHHhc-------c----C-------CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 154 FPSRNPVFQKMMESLR-------D----S-------NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------~----~-------~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.++.++.+...+. . . ....|.++|++|+|||++|+.++....
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 5788888777765441 1 0 124689999999999999999997654
No 442
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.29 E-value=0.16 Score=47.55 Aligned_cols=28 Identities=32% Similarity=0.241 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...+|.+.|.-|+||||+++.++.....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999998653
No 443
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.27 E-value=0.33 Score=53.63 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~ 200 (1205)
....+|+|+|++|+||||++..+......+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999999887643
No 444
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.25 E-value=0.064 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 445
>PRK14531 adenylate kinase; Provisional
Probab=93.24 E-value=0.12 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..|.|.|++|+||||+|+.++..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998864
No 446
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.22 E-value=0.056 Score=56.24 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=61.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH-HhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQ-VVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---RPDSLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 247 (1205)
..+++.|.|+.|.||||+.+.+... ... +-.+.+|..-..- ..+.+|...++.... +...-.....++.+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la--~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMA--QIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHH
Confidence 3468899999999999999999873 221 1222333211100 001111111111111 01011223344444
Q ss_pred HHHc-CCeEEEEEcccccccc-cccccCCCCCCCccccCCCCCeEEEEecCchhHHhh
Q 000975 248 ALKK-KKRVLVILDDIWTQIN-LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI 303 (1205)
Q Consensus 248 ~l~~-~k~~LlVlDdv~~~~~-~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~~ 303 (1205)
.+.. .++-|+++|+...... .+..... ..+.+++....++.+|++|.+.+++..
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~--~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIA--YATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHH--HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 4443 5789999999744321 1100000 000111112357899999999988753
No 447
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.21 E-value=0.059 Score=30.13 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=7.0
Q ss_pred cCcEEEcccCCCCccc
Q 000975 605 KLEILSFRNSHIEQLP 620 (1205)
Q Consensus 605 ~L~~L~L~~~~l~~lp 620 (1205)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 448
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.21 E-value=0.24 Score=56.53 Aligned_cols=90 Identities=21% Similarity=0.292 Sum_probs=50.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHh-----CCCCCCCCCHHH------H
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL-----GLEIVRPDSLVE------K 241 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~------~ 241 (1205)
...++|+|..|+|||||++.+....+ ....++|..-....++.++....+... +.-....+.... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999988876432 223445543323344544444333322 111111112211 1
Q ss_pred HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 242 ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 242 ~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
.-.+.+++. +++.+|+++||+-..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 223444443 379999999998664
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.16 E-value=0.078 Score=53.72 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+++|+|++|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 450
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.15 E-value=0.59 Score=50.14 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
+..+++++|.+|+||||+++.+......+. ..+.+++..... ...+-++..++.++.+.....+..+. ....+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l-~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM-TRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHH-HHHHHHHH
Confidence 447899999999999999999988765322 345666665332 12222233444455443332233333 33333443
Q ss_pred c-CCeEEEEEccccc
Q 000975 251 K-KKRVLVILDDIWT 264 (1205)
Q Consensus 251 ~-~k~~LlVlDdv~~ 264 (1205)
+ .+.=++++|..-.
T Consensus 151 ~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 151 EEARVDYILIDTAGK 165 (270)
T ss_pred hcCCCCEEEEECCCC
Confidence 2 2456788897644
No 451
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.15 E-value=0.17 Score=54.14 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=39.2
Q ss_pred cccCCChHHH---HHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc
Q 000975 152 VHFPSRNPVF---QKMMESLRDS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD 204 (1205)
Q Consensus 152 ~~~~gr~~~~---~~l~~~l~~~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~ 204 (1205)
.+++|..+.. --+++++... .-+.|.++|++|+|||+||-.+++.....-+|.
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 4677765543 2355555533 357899999999999999999999987666664
No 452
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.15 E-value=0.085 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.13 E-value=0.071 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 454
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.13 E-value=0.69 Score=50.68 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHH----hCCCC-----
Q 000975 164 MMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQ----LGLEI----- 232 (1205)
Q Consensus 164 l~~~l~-~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~----l~~~~----- 232 (1205)
+++.+. -.+-..++|.|..|+|||+|++.+++.. +-+.++++.+.+.. .+.+++.++-+. .+...
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtv 222 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTV 222 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEE
Confidence 344443 1233578999999999999999988853 34678899988764 445555554321 11110
Q ss_pred ----CCCCCHHH------HHHHHHHHHH-cCCeEEEEEccccc
Q 000975 233 ----VRPDSLVE------KANQLRQALK-KKKRVLVILDDIWT 264 (1205)
Q Consensus 233 ----~~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 264 (1205)
........ ..-.+.++++ +++.+|+++|++..
T Consensus 223 lV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 223 LIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 00111111 1233445553 37899999998754
No 455
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.12 E-value=0.064 Score=55.39 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 456
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.10 E-value=0.24 Score=50.83 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=29.0
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000975 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (1205)
Q Consensus 163 ~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~ 200 (1205)
+.+..+..++.+++.|.|++|+||||+++.+.......
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 33444434555789999999999999999998887753
No 457
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.07 E-value=0.26 Score=49.02 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+++|+|+.|.|||||++.++....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999998653
No 458
>PRK06217 hypothetical protein; Validated
Probab=93.03 E-value=0.078 Score=53.88 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCC--cEEEEE
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLF--DVVVDA 209 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv 209 (1205)
.|.|.|.+|+||||+|+++...... .++ |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4899999999999999999988653 233 445553
No 459
>PRK13949 shikimate kinase; Provisional
Probab=92.99 E-value=0.089 Score=52.41 Aligned_cols=24 Identities=50% Similarity=0.522 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.|+|++|+||||+|+.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999875
No 460
>PRK14530 adenylate kinase; Provisional
Probab=92.98 E-value=0.087 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 461
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.95 E-value=0.15 Score=56.68 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=38.4
Q ss_pred ccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 151 YVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+..++|.+..+..++-.+.++...-|.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578999888887766666666667899999999999999998765
No 462
>PRK08149 ATP synthase SpaL; Validated
Probab=92.95 E-value=0.34 Score=55.24 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCC-----C-CCCCH------
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEI-----V-RPDSL------ 238 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~-~~~~~------ 238 (1205)
+...++|+|..|+|||||++.++.... .+.++...+... .++.++............ . ..+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345789999999999999998887532 344444555543 345566666655432211 0 11111
Q ss_pred HHHHHHHHHHHH-cCCeEEEEEcccccc
Q 000975 239 VEKANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 239 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
...+..+.+++. +++++|+++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112334445553 479999999998664
No 463
>PRK15453 phosphoribulokinase; Provisional
Probab=92.95 E-value=0.63 Score=49.50 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+..+|+|.|.+|+||||+|+.+.+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999997764
No 464
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.90 E-value=0.13 Score=56.99 Aligned_cols=49 Identities=12% Similarity=0.267 Sum_probs=41.0
Q ss_pred CccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+..++|.++.+..++..+.+....-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4556789999888888777777777788999999999999999987654
No 465
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.89 E-value=0.15 Score=56.15 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
+++.+.|-||+||||+|...+-....++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999988887766433 346667777665555543
No 466
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.88 E-value=0.16 Score=48.89 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=26.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~ 200 (1205)
..+..||-+.|.+|.||||+|.+++.....+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 4556799999999999999999999988754
No 467
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.25 Score=48.69 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD--WKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
..+++|+|..|.|||||++.++.... .....+++.-..... ..+. ...++.-.. ....+...-.+.+.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHh
Confidence 36899999999999999999987653 344555554322111 1111 111211111 1122223333455555
Q ss_pred cCCeEEEEEcccccccc---cccccCCCCCCCccccCCCCCeEEEEecCchhHHh
Q 000975 251 KKKRVLVILDDIWTQIN---LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR 302 (1205)
Q Consensus 251 ~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~~ 302 (1205)
. .+-++++|+....-+ ...+...+.. + ...+..++++|.+.....
T Consensus 97 ~-~~~i~ilDEp~~~lD~~~~~~l~~~l~~-----~-~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 L-NPDLLLLDEPTSGLDPASRERLLELLRE-----L-AEEGRTVIIVTHDPELAE 144 (157)
T ss_pred c-CCCEEEEeCCCcCCCHHHHHHHHHHHHH-----H-HHCCCEEEEEeCCHHHHH
Confidence 3 567889998765422 1111111100 0 112457888888877654
No 468
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.87 E-value=0.12 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 469
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.83 E-value=0.11 Score=51.58 Aligned_cols=24 Identities=50% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
|.|.|.+|+||||+++++++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 470
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.82 E-value=0.078 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998864
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.80 E-value=0.19 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+..|+|++|+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68899999999998777777765
No 472
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.80 E-value=0.65 Score=49.38 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=52.1
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHHhhcCCCcEE-EEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH---
Q 000975 173 VNMIGLYGMGGVGKTTLV-KVVARQVVKEDLFDVV-VDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE--- 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 240 (1205)
-..++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+.+.+.-..+. ...+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 346899999999999996 5555432 23444 777777664 45566666654321110 01111111
Q ss_pred ---HHHHHHHHHH-cCCeEEEEEcccccc
Q 000975 241 ---KANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 ---~~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
..-.+.+++. +++.+|+|+||+-..
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1233444443 369999999998765
No 473
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.79 E-value=0.5 Score=62.30 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+=|.++|++|+|||.||++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 44588999999999999999999865
No 474
>PRK13947 shikimate kinase; Provisional
Probab=92.79 E-value=0.09 Score=52.81 Aligned_cols=24 Identities=46% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998865
No 475
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.77 E-value=0.14 Score=56.66 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
-.+..++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456788999888877754443444458899999999999999998764
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.74 E-value=0.39 Score=57.01 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=36.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGL 230 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (1205)
..+++.|.|.+|+||||+|.+++..-.. +.=..++||+..+ +..++.+. ++.++.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~-~~ge~~lyvs~eE--~~~~l~~~-~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGII-HFDEPGVFVTFEE--SPQDIIKN-ARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEec--CHHHHHHH-HHHcCC
Confidence 3578999999999999999998765431 2125678888864 34444443 344443
No 477
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.72 E-value=0.5 Score=54.22 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHHhhc-----CCCcEEEEEEecCCCC-HHHHHHHHHHHhC-CCC------CCCCCH
Q 000975 173 VNMIGLYGMGGVGKTTLV-KVVARQVVKE-----DLFDVVVDAEVTHTPD-WKEICGRIADQLG-LEI------VRPDSL 238 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~-~~~------~~~~~~ 238 (1205)
-..++|.|..|+|||+|| ..+.+...+. ++-+.++++-+++... +.+ +...+++-+ .+. ...++.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCH
Confidence 346899999999999997 5566664321 2446788999988754 333 333333333 111 011111
Q ss_pred HH------HHHHHHHHHH-cCCeEEEEEcccccc
Q 000975 239 VE------KANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 239 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
.. ..-.+-+++. +++.+|+|+||+-..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 1223444443 479999999998664
No 478
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.72 E-value=0.19 Score=52.33 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
+.|+|+|-|||||||.+..+..-..... ..++-|.++++.+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G--~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMG--KKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhcc--ceeeEecccCCCc
Confidence 4689999999999999999998876433 5778888876653
No 479
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.72 E-value=0.082 Score=50.55 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
|+|+|+.|+|||||++.+.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999998753
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.71 E-value=0.52 Score=50.46 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
..++.|.|.+|+|||++|..++.+...+. =..++|++.... ..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~~--~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMS--KEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCCC--HHHHHHHHH
Confidence 35889999999999999999987765431 246678776653 345555554
No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.70 E-value=0.046 Score=56.56 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999954
No 482
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.69 E-value=0.76 Score=52.58 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH----
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE---- 240 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 240 (1205)
....++|+|..|+|||||++.+++... .+.++++-+.+.. .+.++....+..-+... ...++...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987653 3456667776654 34455444443322111 01111111
Q ss_pred --HHHHHHHHHH-cCCeEEEEEcccccc
Q 000975 241 --KANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 --~~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
.+-.+.++++ +++++|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 2233555553 479999999998654
No 483
>PRK06851 hypothetical protein; Provisional
Probab=92.69 E-value=0.96 Score=50.61 Aligned_cols=44 Identities=30% Similarity=0.271 Sum_probs=32.7
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
.+-.+++.|.|.+|+||||++++++.....+ -++..++-+...+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 3445789999999999999999999998654 4555555444443
No 484
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.69 E-value=0.4 Score=47.15 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=62.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEE---EEEecCCCCHHHHHHHHH---HHhCCC--CCCCCC------H
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVV---DAEVTHTPDWKEICGRIA---DQLGLE--IVRPDS------L 238 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~---~~l~~~--~~~~~~------~ 238 (1205)
...|-|++..|.||||.|..++.+..-.+ + .++ |+.-.........+..+. .+.+.. ....+. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-K-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 46788999999999999999988765322 2 232 333332223333333320 001111 001111 1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEccccccccc-----ccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 239 VEKANQLRQALKKKKRVLVILDDIWTQINL-----DDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 239 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
.+..+...+.+..++-=++|||++-..-.+ +++...+.. ...+.-||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-------rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE-------RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-------CCCCCEEEEECCCCC
Confidence 122334444555455669999998654322 222222222 345668999999874
No 485
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.69 E-value=0.11 Score=50.75 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
+++|+|+.|+||||++.++....+.+ .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 57899999999999999999988643 34444433
No 486
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.66 E-value=0.68 Score=52.85 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=59.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC--CCc---------EEEEEEecCCCCHHHHHHHHHHHhC-CCC------CC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED--LFD---------VVVDAEVTHTPDWKEICGRIADQLG-LEI------VR 234 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~------~~ 234 (1205)
-..++|.|-+|+|||||+..+.+..+... -.| .++++.+.+.....+.+...+..-+ ... ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 35689999999999999999988764100 012 6788888887666665555555544 211 01
Q ss_pred CCCHHH------HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 235 PDSLVE------KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 235 ~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
.++... .+-.+.++++ +++++|+++||+-..
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 111111 2334666666 479999999998654
No 487
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.65 E-value=0.32 Score=54.70 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=34.9
Q ss_pred cCCChHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 154 FPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.++.++.+..++.. .....|.++|++|+|||++|+.++....
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56888777777766632 0135789999999999999999998864
No 488
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.59 E-value=0.19 Score=55.04 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
+.|+|+|-||+||||+|..++.....++ + .++-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCCC
Confidence 4689999999999999999998877544 2 455566655444
No 489
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.56 E-value=0.2 Score=49.73 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 155 PSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 155 ~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
+|....+.++++.+. ......|.|+|..|+||+.+|+.+++.-. ..-...+-|+++.
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA 60 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh
Confidence 577777777777665 12224566999999999999999998532 1122334555553
No 490
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.54 E-value=0.29 Score=55.03 Aligned_cols=64 Identities=23% Similarity=0.208 Sum_probs=47.0
Q ss_pred cCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
++|+++.+..+...+... +-+.+.|.+|+|||++|+.++.... .. .++|.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~--~~---~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALG--LP---FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhC--CC---eEEEecCCCCCHHHhcCch
Confidence 667888887777666543 3477999999999999999999876 33 3667777766666655433
No 491
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.52 E-value=0.13 Score=53.46 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.2
Q ss_pred HhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 167 SLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 167 ~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+.+.+.++|+++|+.|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456789999999999999999999988753
No 492
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.47 E-value=0.094 Score=53.21 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
++|+|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 493
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.44 E-value=0.13 Score=49.97 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (1205)
.++++|+|+.|+|||||+.++....+.+++ .+.-|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~--rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY--RVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc--EEEEEE
Confidence 368999999999999999999999885543 344443
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.43 E-value=0.19 Score=51.81 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.....+|+|+|++|+||||+|+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998764
No 495
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.57 Score=57.85 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=66.9
Q ss_pred cCCChHHHHHHHHHhcc------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLRD------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~~------~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
++|.++.+..|.+.+.. + ......+.|+.|+|||.||++++.-.- +..+..+-++.++... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~e-------vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQE-------VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhh-------hh
Confidence 55777777777777652 1 345678999999999999999998864 4455666666555322 33
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI 266 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~ 266 (1205)
+.++.+.. - -..+...++-+.+++..-.+|+||||+...
T Consensus 635 kligsp~g-y-vG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 635 KLIGSPPG-Y-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hccCCCcc-c-ccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 33343321 1 122334577777876566788889998763
No 496
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.42 E-value=0.11 Score=51.06 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 497
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.39 E-value=0.26 Score=59.76 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=50.3
Q ss_pred CccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhC
Q 000975 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (1205)
-...++|+++.++.+...+... +-+.++|++|+||||+|+.+++.... ..|..++++.- ...+..++++.++..++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~n-~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVYPN-PEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEeC-CCCCchHHHHHHHHhhc
Confidence 3456778888777766666543 34559999999999999999987653 23333333322 22344555677776665
Q ss_pred C
Q 000975 230 L 230 (1205)
Q Consensus 230 ~ 230 (1205)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 498
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.38 E-value=0.62 Score=49.12 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=31.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..++.|.|.+|+|||++|..++.....+ =..++|++....
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 5689999999999999999998765422 356788887664
No 499
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.37 E-value=0.15 Score=57.45 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK-EICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
....|.|.|+.|+||||+++.+.+... .+....++.- .++.... .-...+..+-.... ......+.+...++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~ti-Edp~E~~~~~~~~~i~q~evg~----~~~~~~~~l~~~lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITI-EDPIEYVHRNKRSLINQREVGL----DTLSFANALRAALR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEE-cCChhhhccCccceEEccccCC----CCcCHHHHHHHhhc
Confidence 357899999999999999999887654 3344444432 2221110 00000011101110 11123344555565
Q ss_pred cCCeEEEEEccccccccccc
Q 000975 251 KKKRVLVILDDIWTQINLDD 270 (1205)
Q Consensus 251 ~~k~~LlVlDdv~~~~~~~~ 270 (1205)
..+=.|++|++.+.+.+..
T Consensus 194 -~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 194 -EDPDVILIGEMRDLETVEL 212 (343)
T ss_pred -cCCCEEEEeCCCCHHHHHH
Confidence 4677889999988766543
No 500
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.37 E-value=0.13 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+++|+|.+|+||||||+.++.-.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999987654
Done!