Query 000975
Match_columns 1205
No_of_seqs 675 out of 4676
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.3E-44 1.8E-48 430.1 19.6 309 155-492 131-472 (549)
2 3rgz_A Protein brassinosteroid 100.0 9.8E-37 3.4E-41 385.0 29.2 432 512-1011 77-525 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-35 9.7E-40 369.2 37.8 573 510-1194 23-620 (680)
4 3rgz_A Protein brassinosteroid 100.0 5.3E-36 1.8E-40 378.3 30.5 592 512-1193 50-714 (768)
5 1vt4_I APAF-1 related killer D 100.0 1.2E-36 4E-41 364.5 19.2 283 154-484 130-436 (1221)
6 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-35 9.5E-40 397.3 26.3 315 147-491 119-452 (1249)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-34 9.5E-39 355.2 30.8 526 515-1167 14-556 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.7E-33 1.3E-37 345.2 34.2 522 515-1167 15-558 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 8.2E-33 2.8E-37 346.8 36.6 564 515-1205 7-620 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-33 7.9E-38 347.0 29.3 517 536-1195 13-557 (606)
11 3t6q_A CD180 antigen; protein- 100.0 7.6E-33 2.6E-37 342.4 31.5 524 537-1194 15-558 (606)
12 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-32 4.9E-37 337.3 26.5 309 148-489 120-450 (591)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-31 4.6E-36 341.8 30.8 523 515-1167 7-558 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 4.4E-31 1.5E-35 324.4 27.3 499 515-1167 10-529 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-30 5.1E-35 317.8 28.0 166 517-690 10-180 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 6.1E-30 2.1E-34 314.3 30.6 502 537-1194 10-529 (570)
17 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-30 2.2E-34 326.2 27.0 510 510-1143 22-560 (844)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-29 5.4E-34 308.8 26.4 173 510-690 24-204 (549)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-28 3.9E-33 307.7 31.4 150 516-668 35-189 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4.2E-32 289.5 28.1 460 515-1142 3-480 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-27 4.3E-32 298.3 27.9 158 509-668 49-217 (635)
22 4eco_A Uncharacterized protein 100.0 4E-28 1.4E-32 298.8 21.1 74 591-665 192-287 (636)
23 4ecn_A Leucine-rich repeat pro 100.0 5.1E-28 1.8E-32 301.3 21.4 398 512-1044 323-838 (876)
24 4eco_A Uncharacterized protein 100.0 1.2E-27 4.2E-32 294.5 21.7 398 512-1044 81-598 (636)
25 4ecn_A Leucine-rich repeat pro 99.9 1.3E-27 4.5E-32 297.6 20.8 130 534-665 323-529 (876)
26 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-26 6E-31 279.4 29.7 466 537-1194 3-479 (520)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.5E-26 1.9E-30 277.2 26.3 464 513-1071 32-510 (562)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.2E-25 2.1E-29 267.9 27.8 461 532-1114 29-508 (562)
29 1o6v_A Internalin A; bacterial 99.9 4.7E-24 1.6E-28 253.3 28.3 163 511-690 45-207 (466)
30 1o6v_A Internalin A; bacterial 99.9 5.4E-24 1.8E-28 252.8 26.7 123 945-1114 264-386 (466)
31 1jl5_A Outer protein YOPM; leu 99.9 7E-25 2.4E-29 257.3 18.0 141 512-665 11-166 (454)
32 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5E-29 257.9 20.9 150 515-668 13-170 (455)
33 3v47_A TOLL-like receptor 5B a 99.9 9.5E-24 3.2E-28 250.9 27.8 384 538-1114 14-406 (455)
34 3bz5_A Internalin-J, INLJ; leu 99.9 8E-24 2.7E-28 248.6 25.0 314 511-990 41-354 (457)
35 1jl5_A Outer protein YOPM; leu 99.9 1.9E-24 6.4E-29 253.7 18.1 360 531-1114 8-368 (454)
36 3o6n_A APL1; leucine-rich repe 99.9 8.9E-23 3E-27 236.6 25.8 136 529-666 40-179 (390)
37 4fmz_A Internalin; leucine ric 99.9 2.9E-23 9.8E-28 236.9 21.1 143 532-689 42-184 (347)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-23 7.9E-28 244.6 19.8 120 532-663 40-159 (457)
39 2id5_A Lingo-1, leucine rich r 99.9 2.3E-22 8E-27 240.1 27.8 314 515-1011 14-331 (477)
40 4fmz_A Internalin; leucine ric 99.9 1.2E-21 3.9E-26 223.6 25.5 166 510-690 42-207 (347)
41 3oja_B Anopheles plasmodium-re 99.9 7E-22 2.4E-26 241.9 22.0 304 530-906 47-356 (597)
42 2id5_A Lingo-1, leucine rich r 99.9 2.4E-21 8.2E-26 231.3 25.6 314 537-1044 14-331 (477)
43 3o6n_A APL1; leucine-rich repe 99.9 4.2E-21 1.4E-25 222.5 19.6 301 511-906 44-350 (390)
44 3oja_B Anopheles plasmodium-re 99.8 2.2E-20 7.6E-25 228.6 22.1 127 557-690 49-179 (597)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.8E-24 204.5 18.3 124 535-665 34-160 (332)
46 3ogk_B Coronatine-insensitive 99.8 1.8E-20 6.2E-25 230.9 11.8 165 972-1165 376-547 (592)
47 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-19 8.7E-24 202.3 20.1 150 513-668 34-188 (332)
48 3ogk_B Coronatine-insensitive 99.8 1E-20 3.5E-25 233.1 8.1 128 532-661 110-252 (592)
49 1xku_A Decorin; proteoglycan, 99.8 7.9E-19 2.7E-23 198.2 22.3 145 535-690 32-179 (330)
50 1xku_A Decorin; proteoglycan, 99.8 7.2E-19 2.5E-23 198.5 20.6 151 513-668 32-187 (330)
51 4fcg_A Uncharacterized protein 99.8 2.7E-19 9.2E-24 200.8 15.5 129 533-665 80-219 (328)
52 4fcg_A Uncharacterized protein 99.8 5.4E-19 1.9E-23 198.3 17.4 170 511-690 80-261 (328)
53 2p1m_B Transport inhibitor res 99.8 8.2E-20 2.8E-24 225.2 9.9 164 972-1165 370-540 (594)
54 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-19 1.2E-23 198.5 14.0 170 512-690 50-229 (313)
55 3g06_A SSPH2 (leucine-rich rep 99.8 6.6E-18 2.3E-22 203.7 24.8 135 512-665 40-174 (622)
56 2p1m_B Transport inhibitor res 99.8 4.4E-20 1.5E-24 227.6 5.5 89 944-1045 430-518 (594)
57 2z80_A TOLL-like receptor 2, v 99.8 5.2E-19 1.8E-23 201.7 13.3 168 515-690 34-206 (353)
58 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-18 4.3E-23 194.2 16.0 247 534-910 50-306 (313)
59 3g06_A SSPH2 (leucine-rich rep 99.8 8.1E-18 2.8E-22 203.0 22.8 115 535-666 41-155 (622)
60 1z7x_W Ribonuclease inhibitor; 99.8 5.7E-20 1.9E-24 218.8 2.9 154 534-690 3-178 (461)
61 3zyj_A Leucine-rich repeat-con 99.8 5.8E-18 2E-22 199.2 19.1 167 514-690 45-215 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 6.1E-18 2.1E-22 199.8 18.7 167 514-690 56-226 (452)
63 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-17 5.6E-22 183.0 18.1 173 510-690 30-209 (285)
64 2z66_A Variable lymphocyte rec 99.7 4.1E-18 1.4E-22 190.1 13.2 166 515-690 10-183 (306)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-17 4.7E-22 183.6 16.5 167 515-690 14-185 (285)
66 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.7E-22 189.9 12.0 173 510-690 50-230 (353)
67 1p9a_G Platelet glycoprotein I 99.7 2.1E-16 7.4E-21 173.5 17.7 190 511-710 9-206 (290)
68 2o6q_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 170.0 18.9 189 514-711 18-217 (270)
69 2o6q_A Variable lymphocyte rec 99.7 4.6E-16 1.6E-20 169.6 19.1 176 510-693 35-216 (270)
70 3rfs_A Internalin B, repeat mo 99.7 2.6E-16 8.9E-21 171.6 16.8 192 510-711 39-234 (272)
71 2z66_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 175.9 16.3 218 510-736 26-260 (306)
72 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.5E-22 186.6 4.5 38 830-870 212-249 (317)
73 3zyj_A Leucine-rich repeat-con 99.7 7.1E-16 2.4E-20 181.3 18.3 194 509-712 61-268 (440)
74 1h6u_A Internalin H; cell adhe 99.7 1.1E-15 3.8E-20 169.7 18.6 186 511-712 40-230 (308)
75 2z62_A TOLL-like receptor 4, v 99.7 3.8E-16 1.3E-20 171.2 14.5 164 516-685 11-179 (276)
76 3zyi_A Leucine-rich repeat-con 99.7 7.6E-16 2.6E-20 181.8 17.9 194 509-712 72-279 (452)
77 1z7x_W Ribonuclease inhibitor; 99.7 6.5E-18 2.2E-22 201.0 -0.3 331 510-870 26-410 (461)
78 3m19_A Variable lymphocyte rec 99.6 1.7E-15 5.7E-20 163.1 17.6 169 513-690 15-187 (251)
79 2xwt_C Thyrotropin receptor; s 99.6 9.5E-16 3.2E-20 163.8 13.8 142 523-668 22-172 (239)
80 2z62_A TOLL-like receptor 4, v 99.6 8.6E-16 3E-20 168.3 13.3 193 510-711 26-236 (276)
81 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4.1E-20 166.4 13.6 163 517-690 24-189 (272)
82 3oja_A Leucine-rich immune mol 99.6 4.3E-16 1.5E-20 184.6 10.7 125 533-665 33-157 (487)
83 1h6t_A Internalin B; cell adhe 99.6 7E-15 2.4E-19 161.6 18.3 164 511-690 45-208 (291)
84 3o53_A Protein LRIM1, AGAP0063 99.6 7.1E-16 2.4E-20 172.4 10.4 206 511-735 33-248 (317)
85 1p9a_G Platelet glycoprotein I 99.6 3.1E-15 1.1E-19 164.2 15.3 173 510-693 29-206 (290)
86 1wwl_A Monocyte differentiatio 99.6 1.4E-16 4.7E-21 177.8 3.0 150 513-665 44-214 (312)
87 3m19_A Variable lymphocyte rec 99.6 8.5E-15 2.9E-19 157.5 16.9 154 510-665 33-192 (251)
88 3e6j_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 153.5 16.4 148 515-665 22-172 (229)
89 2xwt_C Thyrotropin receptor; s 99.6 3.5E-15 1.2E-19 159.4 12.2 172 510-690 29-213 (239)
90 3oja_A Leucine-rich immune mol 99.6 3.4E-15 1.2E-19 176.9 13.2 183 512-712 34-227 (487)
91 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-14 3.4E-19 152.9 14.8 149 515-665 14-166 (220)
92 4ay9_X Follicle-stimulating ho 99.6 1E-14 3.5E-19 165.5 15.3 152 515-668 12-170 (350)
93 1h6u_A Internalin H; cell adhe 99.6 3.1E-14 1.1E-18 158.0 18.6 166 510-691 61-226 (308)
94 2v9t_B SLIT homolog 2 protein 99.6 1.4E-14 4.9E-19 151.8 14.8 148 515-665 14-165 (220)
95 2qen_A Walker-type ATPase; unk 99.6 7E-14 2.4E-18 159.3 21.4 296 148-485 8-349 (350)
96 4ezg_A Putative uncharacterize 99.5 1.9E-14 6.6E-19 148.2 12.9 148 511-665 43-194 (197)
97 1m9s_A Internalin B; cell inva 99.5 4E-14 1.4E-18 170.7 17.2 164 511-690 42-205 (605)
98 1wwl_A Monocyte differentiatio 99.5 8.2E-15 2.8E-19 163.4 10.2 155 511-668 94-269 (312)
99 1h6t_A Internalin B; cell adhe 99.5 5E-14 1.7E-18 154.8 14.4 178 519-712 31-213 (291)
100 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 143.1 16.6 147 515-664 10-160 (208)
101 1w5s_A Origin recognition comp 99.5 5.5E-13 1.9E-17 155.6 22.8 307 152-480 22-387 (412)
102 2fna_A Conserved hypothetical 99.5 2.3E-13 7.9E-18 155.5 18.6 291 149-484 10-356 (357)
103 4ezg_A Putative uncharacterize 99.5 9.5E-14 3.3E-18 143.0 13.7 145 532-690 42-189 (197)
104 2ast_B S-phase kinase-associat 99.5 1.8E-14 6.1E-19 163.1 8.5 122 536-662 49-178 (336)
105 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 157.8 13.5 151 515-668 21-179 (361)
106 1xeu_A Internalin C; cellular 99.5 8.4E-14 2.9E-18 150.3 11.9 160 514-690 21-180 (263)
107 1xeu_A Internalin C; cellular 99.5 1.5E-13 5.1E-18 148.4 13.8 148 511-667 40-187 (263)
108 2o6s_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 142.6 13.8 164 537-711 10-177 (208)
109 4glp_A Monocyte differentiatio 99.5 1.6E-14 5.5E-19 160.9 6.2 15 772-786 291-305 (310)
110 4ay9_X Follicle-stimulating ho 99.5 2E-13 6.9E-18 154.7 14.3 222 945-1191 29-254 (350)
111 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 7.7E-18 142.6 13.5 143 537-690 14-160 (220)
112 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.9E-18 154.0 10.9 189 511-710 90-305 (310)
113 2ell_A Acidic leucine-rich nuc 99.5 1.9E-13 6.4E-18 136.8 11.4 133 534-669 24-164 (168)
114 1m9s_A Internalin B; cell inva 99.5 2E-13 6.8E-18 164.6 13.6 180 517-712 26-210 (605)
115 2xot_A Amphoterin-induced prot 99.5 1.2E-13 4.2E-18 157.1 11.1 155 509-665 36-202 (361)
116 3cvr_A Invasion plasmid antige 99.5 5.9E-13 2E-17 158.4 17.0 138 512-668 59-196 (571)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 4.6E-13 1.6E-17 140.2 13.5 143 537-690 14-161 (220)
118 2ast_B S-phase kinase-associat 99.4 4.2E-14 1.4E-18 160.1 5.5 174 511-690 69-255 (336)
119 3e6j_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 139.4 14.3 144 535-690 20-167 (229)
120 2ca6_A RAN GTPase-activating p 99.4 5.1E-14 1.8E-18 162.4 4.1 38 831-870 273-315 (386)
121 2ca6_A RAN GTPase-activating p 99.4 6.6E-14 2.3E-18 161.5 4.8 177 511-690 31-252 (386)
122 2je0_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 131.9 7.7 123 534-659 17-147 (149)
123 2ell_A Acidic leucine-rich nuc 99.4 8.3E-13 2.9E-17 132.1 9.6 132 510-645 22-164 (168)
124 3cvr_A Invasion plasmid antige 99.4 3.2E-12 1.1E-16 152.1 16.2 153 511-690 79-238 (571)
125 2wfh_A SLIT homolog 2 protein 99.4 2.1E-12 7.1E-17 131.9 12.6 124 537-665 13-139 (193)
126 3qfl_A MLA10; coiled-coil, (CC 99.4 8.8E-14 3E-18 125.8 2.1 79 13-92 2-81 (115)
127 1w8a_A SLIT protein; signaling 99.4 2.3E-12 8E-17 131.7 11.4 124 537-665 11-139 (192)
128 1dce_A Protein (RAB geranylger 99.3 8.9E-14 3E-18 166.7 0.3 123 560-688 442-566 (567)
129 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.8E-17 127.4 8.3 130 557-690 15-148 (149)
130 1w8a_A SLIT protein; signaling 99.3 5.1E-12 1.8E-16 129.1 12.5 125 515-640 11-139 (192)
131 1a9n_A U2A', U2A'; complex (nu 99.3 1.9E-12 6.4E-17 130.5 8.7 130 531-664 16-152 (176)
132 4b8c_D Glucose-repressible alc 99.3 2.1E-12 7.3E-17 160.1 10.7 151 512-666 173-330 (727)
133 3goz_A Leucine-rich repeat-con 99.3 7.1E-13 2.4E-17 151.1 5.9 128 536-665 24-180 (362)
134 3goz_A Leucine-rich repeat-con 99.3 4.8E-13 1.6E-17 152.5 3.8 155 510-666 20-210 (362)
135 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5E-16 125.6 13.7 121 515-638 13-137 (193)
136 2v1u_A Cell division control p 99.3 1.5E-10 5E-15 133.7 22.6 296 152-467 19-350 (387)
137 1a9n_A U2A', U2A'; complex (nu 99.3 5.6E-12 1.9E-16 127.0 9.0 131 555-690 15-148 (176)
138 2o6r_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 120.8 13.5 124 537-665 10-137 (177)
139 2qby_B CDC6 homolog 3, cell di 99.2 1.9E-10 6.5E-15 132.5 20.9 244 152-416 20-295 (384)
140 2o6r_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 120.4 13.6 122 515-638 10-135 (177)
141 1ds9_A Outer arm dynein; leuci 99.2 1.5E-13 5.1E-18 141.7 -5.9 108 555-665 44-153 (198)
142 1fnn_A CDC6P, cell division co 99.2 8E-10 2.7E-14 127.6 24.8 292 152-467 17-350 (389)
143 2qby_A CDC6 homolog 1, cell di 99.2 2.3E-10 7.8E-15 132.1 19.1 290 152-467 20-347 (386)
144 1dce_A Protein (RAB geranylger 99.2 3.7E-11 1.3E-15 144.0 11.2 120 536-659 443-567 (567)
145 4b8c_D Glucose-repressible alc 99.2 1.4E-11 4.9E-16 152.7 7.8 141 521-664 210-353 (727)
146 1ds9_A Outer arm dynein; leuci 99.2 1.1E-12 3.7E-17 135.2 -3.6 142 513-658 24-180 (198)
147 2chg_A Replication factor C sm 99.1 5.2E-10 1.8E-14 118.0 16.4 189 147-359 12-203 (226)
148 1njg_A DNA polymerase III subu 99.1 5E-10 1.7E-14 120.2 16.4 201 147-363 18-231 (250)
149 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.1E-15 115.2 11.5 101 562-665 15-118 (174)
150 3g39_A Variable lymphocyte rec 99.1 2.3E-10 7.8E-15 114.0 11.2 103 560-665 10-115 (170)
151 2r9u_A Variable lymphocyte rec 99.0 1E-09 3.6E-14 109.5 11.8 98 537-638 15-116 (174)
152 3g39_A Variable lymphocyte rec 99.0 1.8E-09 6.1E-14 107.5 11.6 98 537-638 12-113 (170)
153 1sxj_B Activator 1 37 kDa subu 98.9 5.4E-09 1.8E-13 117.1 13.7 194 146-362 15-212 (323)
154 3sb4_A Hypothetical leucine ri 98.9 3E-09 1E-13 119.2 9.9 169 511-690 48-305 (329)
155 3sb4_A Hypothetical leucine ri 98.8 3.5E-09 1.2E-13 118.6 6.9 125 532-661 23-157 (329)
156 2ifg_A High affinity nerve gro 98.7 2.3E-08 7.8E-13 113.1 10.3 100 563-665 12-116 (347)
157 1iqp_A RFCS; clamp loader, ext 98.7 2.5E-08 8.7E-13 111.8 10.4 190 147-362 20-214 (327)
158 3un9_A NLR family member X1; l 98.6 5.9E-09 2E-13 117.9 2.1 157 508-665 68-252 (372)
159 3te6_A Regulatory protein SIR3 98.6 4.3E-07 1.5E-11 98.2 16.4 171 154-329 22-211 (318)
160 2chq_A Replication factor C sm 98.6 2.1E-07 7.1E-12 103.9 14.4 187 146-359 11-203 (319)
161 2ifg_A High affinity nerve gro 98.6 5.8E-08 2E-12 109.7 9.3 98 538-638 12-114 (347)
162 3un9_A NLR family member X1; l 98.6 9E-09 3.1E-13 116.4 1.1 155 533-690 71-247 (372)
163 1jr3_A DNA polymerase III subu 98.5 6.1E-07 2.1E-11 102.5 14.9 197 148-360 12-221 (373)
164 1jbk_A CLPB protein; beta barr 98.5 2.3E-07 7.8E-12 94.8 8.4 162 149-325 19-194 (195)
165 1hqc_A RUVB; extended AAA-ATPa 98.5 2.4E-06 8.3E-11 95.3 17.3 185 148-363 8-214 (324)
166 3e4g_A ATP synthase subunit S, 98.4 5.2E-08 1.8E-12 94.8 1.7 93 975-1073 62-154 (176)
167 4fdw_A Leucine rich hypothetic 98.4 1.2E-06 4.2E-11 99.9 13.3 163 512-690 113-279 (401)
168 1d2n_A N-ethylmaleimide-sensit 98.4 1.2E-05 4E-10 86.9 19.9 200 153-382 34-265 (272)
169 1sxj_A Activator 1 95 kDa subu 98.4 1.7E-06 5.7E-11 102.5 13.3 210 146-376 33-272 (516)
170 4fdw_A Leucine rich hypothetic 98.4 2.5E-06 8.5E-11 97.3 14.2 141 514-662 137-281 (401)
171 3h4m_A Proteasome-activating n 98.3 6.3E-06 2.2E-10 89.9 14.8 186 147-357 12-228 (285)
172 3bos_A Putative DNA replicatio 98.3 7E-07 2.4E-11 94.9 6.7 177 149-359 25-216 (242)
173 3pvs_A Replication-associated 98.3 9.8E-06 3.3E-10 93.2 16.4 178 147-357 21-212 (447)
174 1sxj_D Activator 1 41 kDa subu 98.3 2.3E-06 7.7E-11 96.9 10.6 198 147-359 32-234 (353)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.2E-05 4.1E-10 86.4 15.8 179 150-354 4-215 (262)
176 3e4g_A ATP synthase subunit S, 98.2 5.7E-07 1.9E-11 87.5 4.5 92 946-1050 61-156 (176)
177 3eie_A Vacuolar protein sortin 98.2 3.1E-05 1.1E-09 85.7 17.1 189 145-359 11-227 (322)
178 3d8b_A Fidgetin-like protein 1 98.2 5.2E-05 1.8E-09 85.1 19.1 188 148-360 80-295 (357)
179 4fs7_A Uncharacterized protein 98.1 2.6E-05 8.9E-10 89.4 16.5 57 945-1009 319-375 (394)
180 1sxj_E Activator 1 40 kDa subu 98.1 9.2E-06 3.1E-10 91.8 11.6 199 146-359 8-236 (354)
181 1sxj_C Activator 1 40 kDa subu 98.1 2E-05 6.7E-10 88.2 14.1 186 146-356 19-208 (340)
182 3pfi_A Holliday junction ATP-d 98.1 5.9E-05 2E-09 84.4 17.8 181 147-358 24-225 (338)
183 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00014 4.7E-09 80.2 20.1 193 147-360 7-223 (322)
184 3vfd_A Spastin; ATPase, microt 98.1 8.4E-05 2.9E-09 84.7 18.9 189 146-359 109-325 (389)
185 3u61_B DNA polymerase accessor 98.1 1.4E-05 4.7E-10 89.0 11.5 176 146-355 20-211 (324)
186 3syl_A Protein CBBX; photosynt 98.0 1E-05 3.5E-10 89.4 9.9 152 153-330 32-218 (309)
187 1a5t_A Delta prime, HOLB; zinc 98.0 6E-05 2E-09 83.7 15.6 169 158-358 8-203 (334)
188 3b9p_A CG5977-PA, isoform A; A 98.0 0.00013 4.4E-09 79.9 18.0 190 147-359 16-232 (297)
189 2p65_A Hypothetical protein PF 98.0 1E-05 3.6E-10 81.7 8.4 51 148-198 18-68 (187)
190 2zan_A Vacuolar protein sortin 98.0 0.00021 7.2E-09 82.5 20.1 192 147-359 129-344 (444)
191 4fs7_A Uncharacterized protein 98.0 6.2E-05 2.1E-09 86.2 15.2 57 532-591 69-126 (394)
192 3cf0_A Transitional endoplasmi 98.0 8.7E-05 3E-09 81.1 15.4 181 147-355 10-223 (301)
193 2z4s_A Chromosomal replication 98.0 6.7E-05 2.3E-09 86.5 15.0 184 150-357 103-303 (440)
194 2qp9_X Vacuolar protein sortin 98.0 6.2E-05 2.1E-09 84.3 14.3 187 147-359 46-260 (355)
195 2ra8_A Uncharacterized protein 97.9 8.6E-06 3E-10 91.0 7.0 110 553-665 166-292 (362)
196 3uk6_A RUVB-like 2; hexameric 97.9 3.7E-05 1.3E-09 87.3 12.4 48 151-198 43-95 (368)
197 3pxg_A Negative regulator of g 97.9 6E-05 2E-09 87.8 13.8 152 148-329 176-338 (468)
198 4b4t_J 26S protease regulatory 97.9 4.3E-05 1.5E-09 84.6 11.9 184 146-353 142-354 (405)
199 1io0_A Tropomodulin; LRR prote 97.9 4.7E-06 1.6E-10 83.8 3.5 111 554-665 31-164 (185)
200 1qvr_A CLPB protein; coiled co 97.9 4.6E-05 1.6E-09 96.2 12.5 162 148-329 166-345 (854)
201 1l8q_A Chromosomal replication 97.8 0.00014 4.9E-09 80.6 13.9 166 160-354 22-202 (324)
202 4b4t_I 26S protease regulatory 97.8 0.00028 9.6E-09 78.3 15.6 185 145-353 175-388 (437)
203 4b4t_L 26S protease subunit RP 97.8 0.00021 7.1E-09 80.7 14.7 184 146-353 175-387 (437)
204 4b4t_M 26S protease regulatory 97.8 5.4E-05 1.8E-09 85.3 9.4 184 146-353 175-387 (434)
205 2ra8_A Uncharacterized protein 97.7 1.5E-05 5.3E-10 88.9 4.9 129 532-665 170-320 (362)
206 1lv7_A FTSH; alpha/beta domain 97.7 0.00043 1.5E-08 73.8 15.9 187 147-356 7-221 (257)
207 1io0_A Tropomodulin; LRR prote 97.7 1.2E-05 3.9E-10 80.9 3.1 107 532-638 34-162 (185)
208 4b4t_H 26S protease regulatory 97.7 0.00017 6E-09 80.8 12.7 183 147-353 204-415 (467)
209 3rw6_A Nuclear RNA export fact 97.7 1.9E-05 6.5E-10 83.2 4.6 62 556-617 167-233 (267)
210 3rw6_A Nuclear RNA export fact 97.7 6.9E-06 2.3E-10 86.6 0.3 59 579-638 167-231 (267)
211 3n70_A Transport activator; si 97.7 1.8E-05 6.2E-10 75.8 3.2 45 153-197 2-48 (145)
212 2gno_A DNA polymerase III, gam 97.6 0.00016 5.3E-09 78.5 10.8 145 157-329 2-152 (305)
213 4b4t_K 26S protease regulatory 97.6 0.00031 1.1E-08 79.1 13.0 183 147-353 167-379 (428)
214 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00054 1.8E-08 85.6 16.2 159 148-329 182-362 (758)
215 4gt6_A Cell surface protein; l 97.5 0.0017 5.9E-08 74.1 18.1 108 550-661 54-169 (394)
216 3pxi_A Negative regulator of g 97.5 0.00024 8.2E-09 88.6 10.8 152 148-329 176-338 (758)
217 4fcw_A Chaperone protein CLPB; 97.5 0.00021 7.3E-09 78.8 8.8 105 153-265 18-131 (311)
218 3hu3_A Transitional endoplasmi 97.5 0.0017 5.9E-08 75.2 16.6 175 150-352 202-406 (489)
219 2r62_A Cell division protease 97.4 0.00021 7.1E-09 76.8 8.0 160 150-330 9-197 (268)
220 2ce7_A Cell division protein F 97.4 0.0013 4.4E-08 75.5 14.3 176 150-353 14-221 (476)
221 2w58_A DNAI, primosome compone 97.3 0.0011 3.7E-08 67.6 11.3 96 151-265 24-127 (202)
222 3ec2_A DNA replication protein 97.3 0.00047 1.6E-08 68.8 8.4 88 159-264 21-111 (180)
223 4gt6_A Cell surface protein; l 97.2 0.011 3.8E-07 67.3 19.1 120 535-661 65-191 (394)
224 3pxi_A Negative regulator of g 97.2 0.0038 1.3E-07 77.7 16.4 155 153-329 492-675 (758)
225 1in4_A RUVB, holliday junction 97.1 0.0087 3E-07 66.2 16.9 181 147-357 20-220 (334)
226 1ofh_A ATP-dependent HSL prote 97.1 0.002 6.8E-08 70.8 11.2 46 153-198 16-75 (310)
227 2bjv_A PSP operon transcriptio 97.0 0.00046 1.6E-08 73.9 5.6 62 151-214 5-68 (265)
228 2c9o_A RUVB-like 1; hexameric 97.0 0.0029 9.9E-08 73.4 12.1 48 151-198 36-88 (456)
229 3cf2_A TER ATPase, transitiona 96.9 0.00088 3E-08 81.5 7.3 180 150-353 202-407 (806)
230 2x8a_A Nuclear valosin-contain 96.8 0.0044 1.5E-07 66.1 11.0 160 150-330 8-192 (274)
231 1ixz_A ATP-dependent metallopr 96.8 0.019 6.6E-07 60.6 16.0 179 147-353 11-221 (254)
232 1ojl_A Transcriptional regulat 96.8 0.012 4E-07 64.0 13.8 45 153-197 3-49 (304)
233 3m6a_A ATP-dependent protease 96.7 0.0091 3.1E-07 70.6 13.2 162 153-329 82-266 (543)
234 1iy2_A ATP-dependent metallopr 96.7 0.018 6E-07 61.9 14.2 179 147-353 35-245 (278)
235 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0063 2.1E-07 75.9 10.2 102 153-265 459-569 (758)
236 2dhr_A FTSH; AAA+ protein, hex 96.4 0.019 6.5E-07 66.3 13.3 174 149-353 28-236 (499)
237 3io5_A Recombination and repai 96.4 0.012 4.1E-07 62.4 10.1 86 175-265 30-123 (333)
238 3hr8_A Protein RECA; alpha and 96.3 0.01 3.6E-07 65.1 9.7 86 173-265 61-151 (356)
239 2z43_A DNA repair and recombin 96.3 0.017 5.7E-07 63.5 11.2 91 173-264 107-214 (324)
240 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0027 9.2E-08 67.7 4.4 70 173-265 123-194 (331)
241 3dm5_A SRP54, signal recogniti 96.2 0.099 3.4E-06 58.9 17.3 28 172-199 99-126 (443)
242 1n0w_A DNA repair protein RAD5 96.2 0.012 4.3E-07 61.6 9.7 92 173-265 24-131 (243)
243 1v5w_A DMC1, meiotic recombina 96.2 0.021 7.1E-07 63.2 11.6 91 173-264 122-230 (343)
244 1ypw_A Transitional endoplasmi 96.2 0.0088 3E-07 74.3 9.4 156 149-330 201-386 (806)
245 2cvh_A DNA repair and recombin 96.2 0.015 5.2E-07 59.9 9.9 86 173-265 20-117 (220)
246 2xxa_A Signal recognition part 96.2 0.23 7.8E-06 56.3 20.2 90 172-262 99-192 (433)
247 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.007 2.4E-07 63.1 6.8 39 173-213 23-61 (235)
248 2zr9_A Protein RECA, recombina 96.0 0.018 6.3E-07 63.5 9.8 86 173-265 61-151 (349)
249 1qvr_A CLPB protein; coiled co 96.0 0.0093 3.2E-07 75.1 8.3 60 153-214 559-627 (854)
250 1xp8_A RECA protein, recombina 95.9 0.021 7.1E-07 63.3 9.8 86 173-265 74-164 (366)
251 2kjq_A DNAA-related protein; s 95.9 0.0087 3E-07 57.0 5.8 40 172-213 35-74 (149)
252 3kl4_A SRP54, signal recogniti 95.9 0.099 3.4E-06 58.9 15.3 57 172-230 96-153 (433)
253 2i1q_A DNA repair and recombin 95.8 0.016 5.6E-07 63.6 8.5 91 173-264 98-215 (322)
254 3t15_A Ribulose bisphosphate c 95.8 0.0076 2.6E-07 65.1 5.4 26 173-198 36-61 (293)
255 1u94_A RECA protein, recombina 95.8 0.024 8.2E-07 62.5 9.3 86 173-265 63-153 (356)
256 2qgz_A Helicase loader, putati 95.7 0.016 5.6E-07 62.9 7.7 61 150-211 122-189 (308)
257 3co5_A Putative two-component 95.6 0.004 1.4E-07 59.0 2.0 45 153-197 5-51 (143)
258 1j8m_F SRP54, signal recogniti 95.6 0.29 1E-05 52.4 16.7 88 173-262 98-189 (297)
259 3lda_A DNA repair protein RAD5 95.3 0.049 1.7E-06 61.0 10.1 91 173-264 178-284 (400)
260 4h09_A Hypothetical leucine ri 95.3 0.043 1.5E-06 62.0 9.6 124 532-661 215-342 (379)
261 1jr3_D DNA polymerase III, del 95.2 0.16 5.5E-06 56.2 14.0 158 171-358 16-183 (343)
262 4a74_A DNA repair and recombin 95.2 0.052 1.8E-06 56.2 9.4 91 173-264 25-136 (231)
263 3ice_A Transcription terminati 95.2 0.04 1.4E-06 59.9 8.3 100 162-265 162-273 (422)
264 4h09_A Hypothetical leucine ri 95.1 0.063 2.2E-06 60.6 10.4 134 513-653 218-357 (379)
265 2px0_A Flagellar biosynthesis 95.1 0.097 3.3E-06 56.2 11.0 86 172-261 104-190 (296)
266 1rz3_A Hypothetical protein rb 95.0 0.02 6.7E-07 58.0 5.2 44 156-199 2-48 (201)
267 3c8u_A Fructokinase; YP_612366 94.8 0.027 9.1E-07 57.3 5.4 53 159-213 6-60 (208)
268 3bh0_A DNAB-like replicative h 94.6 0.13 4.3E-06 56.1 10.7 51 173-227 68-118 (315)
269 2ck3_D ATP synthase subunit be 94.6 0.18 6.1E-06 56.8 11.7 101 164-265 143-265 (482)
270 2dr3_A UPF0273 protein PH0284; 94.5 0.13 4.3E-06 53.9 10.1 40 173-214 23-62 (247)
271 1pzn_A RAD51, DNA repair and r 94.4 0.079 2.7E-06 58.5 8.5 93 172-265 130-243 (349)
272 3rfe_A Platelet glycoprotein I 94.4 0.059 2E-06 49.7 6.3 56 607-665 11-68 (130)
273 1g8p_A Magnesium-chelatase 38 94.4 0.023 7.8E-07 63.5 4.3 52 147-198 19-70 (350)
274 3cmu_A Protein RECA, recombina 94.4 0.11 3.7E-06 69.3 10.8 86 172-264 1426-1516(2050)
275 4akg_A Glutathione S-transfera 94.3 0.2 6.9E-06 69.3 13.7 81 174-265 1268-1348(2695)
276 1qhx_A CPT, protein (chloramph 94.1 0.027 9.2E-07 55.6 3.7 25 174-198 4-28 (178)
277 3rfe_A Platelet glycoprotein I 94.1 0.069 2.4E-06 49.2 6.0 50 563-614 12-65 (130)
278 3kb2_A SPBC2 prophage-derived 94.1 0.03 1E-06 54.9 3.8 25 174-198 2-26 (173)
279 1sky_E F1-ATPase, F1-ATP synth 94.1 0.12 4.1E-06 58.3 9.0 91 174-265 152-257 (473)
280 1ls1_A Signal recognition part 94.1 0.15 5.2E-06 54.7 9.6 89 172-262 97-189 (295)
281 2b8t_A Thymidine kinase; deoxy 94.0 0.02 6.8E-07 58.3 2.4 113 172-299 11-127 (223)
282 3e70_C DPA, signal recognition 94.0 0.53 1.8E-05 51.1 13.8 58 171-230 127-185 (328)
283 3vaa_A Shikimate kinase, SK; s 93.9 0.036 1.2E-06 55.9 4.1 27 172-198 24-50 (199)
284 4a1f_A DNAB helicase, replicat 93.9 0.25 8.7E-06 53.7 10.9 50 173-226 46-95 (338)
285 1vma_A Cell division protein F 93.9 0.17 5.9E-06 54.3 9.5 88 172-263 103-196 (306)
286 2r44_A Uncharacterized protein 93.8 0.045 1.5E-06 60.4 4.9 44 153-198 28-71 (331)
287 1pgv_A TMD-1, tropomodulin TMD 93.7 0.055 1.9E-06 53.5 4.9 81 556-636 38-135 (197)
288 3lw7_A Adenylate kinase relate 93.7 0.031 1.1E-06 55.0 3.2 20 174-193 2-21 (179)
289 3trf_A Shikimate kinase, SK; a 93.7 0.04 1.4E-06 54.8 3.9 26 173-198 5-30 (185)
290 2j37_W Signal recognition part 93.6 0.57 1.9E-05 54.0 13.7 58 172-231 100-158 (504)
291 1kgd_A CASK, peripheral plasma 93.5 0.04 1.4E-06 54.5 3.5 25 173-197 5-29 (180)
292 1kag_A SKI, shikimate kinase I 93.5 0.036 1.2E-06 54.4 3.1 25 174-198 5-29 (173)
293 1ly1_A Polynucleotide kinase; 93.5 0.04 1.4E-06 54.5 3.5 22 174-195 3-24 (181)
294 1fx0_B ATP synthase beta chain 93.4 0.15 5.3E-06 57.5 8.4 101 164-265 155-278 (498)
295 1zp6_A Hypothetical protein AT 93.4 0.041 1.4E-06 55.0 3.5 24 173-196 9-32 (191)
296 3uie_A Adenylyl-sulfate kinase 93.4 0.051 1.7E-06 54.8 4.2 29 170-198 22-50 (200)
297 3hws_A ATP-dependent CLP prote 93.4 0.072 2.4E-06 59.6 5.8 45 154-198 17-76 (363)
298 4eun_A Thermoresistant glucoki 93.4 0.051 1.7E-06 54.8 4.1 27 171-197 27-53 (200)
299 2ga8_A Hypothetical 39.9 kDa p 93.4 0.084 2.9E-06 57.2 5.9 41 158-198 5-49 (359)
300 2hf9_A Probable hydrogenase ni 93.3 0.071 2.4E-06 55.0 5.3 38 161-198 26-63 (226)
301 2ehv_A Hypothetical protein PH 93.3 0.27 9.1E-06 51.5 9.9 24 173-196 30-53 (251)
302 1xjc_A MOBB protein homolog; s 93.3 0.092 3.1E-06 50.6 5.4 28 172-199 3-30 (169)
303 1odf_A YGR205W, hypothetical 3 93.2 0.096 3.3E-06 56.0 6.1 55 171-225 29-84 (290)
304 3t61_A Gluconokinase; PSI-biol 93.2 0.043 1.5E-06 55.5 3.3 25 173-197 18-42 (202)
305 3l0o_A Transcription terminati 93.2 0.054 1.8E-06 58.8 4.0 52 162-214 163-216 (427)
306 1nks_A Adenylate kinase; therm 93.1 0.052 1.8E-06 54.4 3.7 25 174-198 2-26 (194)
307 3iij_A Coilin-interacting nucl 93.1 0.049 1.7E-06 53.8 3.5 26 173-198 11-36 (180)
308 3umf_A Adenylate kinase; rossm 93.1 0.062 2.1E-06 54.4 4.2 27 172-198 28-54 (217)
309 1kht_A Adenylate kinase; phosp 93.1 0.057 2E-06 54.0 3.9 25 174-198 4-28 (192)
310 2rhm_A Putative kinase; P-loop 93.1 0.058 2E-06 54.0 4.0 26 173-198 5-30 (193)
311 3fwy_A Light-independent proto 93.0 0.093 3.2E-06 56.8 5.8 42 171-214 46-87 (314)
312 1pgv_A TMD-1, tropomodulin TMD 93.0 0.049 1.7E-06 53.9 3.2 106 532-637 39-167 (197)
313 2yvu_A Probable adenylyl-sulfa 93.0 0.094 3.2E-06 52.1 5.4 28 172-199 12-39 (186)
314 1via_A Shikimate kinase; struc 93.0 0.049 1.7E-06 53.5 3.3 24 175-198 6-29 (175)
315 3nbx_X ATPase RAVA; AAA+ ATPas 93.0 0.056 1.9E-06 62.5 4.2 44 153-198 23-66 (500)
316 2ze6_A Isopentenyl transferase 93.0 0.056 1.9E-06 56.8 3.8 25 174-198 2-26 (253)
317 3tau_A Guanylate kinase, GMP k 92.9 0.061 2.1E-06 54.6 3.9 27 172-198 7-33 (208)
318 2wsm_A Hydrogenase expression/ 92.9 0.073 2.5E-06 54.6 4.6 38 161-198 18-55 (221)
319 2ffh_A Protein (FFH); SRP54, s 92.9 0.45 1.5E-05 53.5 11.2 88 172-262 97-189 (425)
320 1y63_A LMAJ004144AAA protein; 92.8 0.068 2.3E-06 53.0 4.0 24 173-196 10-33 (184)
321 1gvn_B Zeta; postsegregational 92.8 0.095 3.2E-06 56.1 5.4 25 173-197 33-57 (287)
322 1ye8_A Protein THEP1, hypothet 92.8 0.069 2.4E-06 52.4 4.0 24 175-198 2-25 (178)
323 1knq_A Gluconate kinase; ALFA/ 92.8 0.065 2.2E-06 52.6 3.8 25 173-197 8-32 (175)
324 1um8_A ATP-dependent CLP prote 92.8 0.098 3.4E-06 58.8 5.8 25 174-198 73-97 (376)
325 3tr0_A Guanylate kinase, GMP k 92.7 0.066 2.3E-06 54.2 3.9 25 173-197 7-31 (205)
326 2qor_A Guanylate kinase; phosp 92.7 0.057 1.9E-06 54.7 3.3 26 172-197 11-36 (204)
327 1ex7_A Guanylate kinase; subst 92.7 0.055 1.9E-06 53.3 3.1 25 174-198 2-26 (186)
328 3cf2_A TER ATPase, transitiona 92.7 0.19 6.6E-06 61.2 8.4 96 149-265 474-582 (806)
329 2c95_A Adenylate kinase 1; tra 92.7 0.071 2.4E-06 53.5 4.0 27 172-198 8-34 (196)
330 2iyv_A Shikimate kinase, SK; t 92.7 0.054 1.8E-06 53.8 3.0 25 174-198 3-27 (184)
331 1zuh_A Shikimate kinase; alpha 92.6 0.071 2.4E-06 51.9 3.8 26 173-198 7-32 (168)
332 2plr_A DTMP kinase, probable t 92.6 0.14 4.8E-06 52.1 6.3 26 174-199 5-30 (213)
333 2jaq_A Deoxyguanosine kinase; 92.6 0.069 2.4E-06 54.0 3.8 24 175-198 2-25 (205)
334 3cmu_A Protein RECA, recombina 92.5 0.33 1.1E-05 64.8 10.7 86 173-265 383-473 (2050)
335 1tev_A UMP-CMP kinase; ploop, 92.5 0.074 2.5E-06 53.3 3.9 26 173-198 3-28 (196)
336 3ney_A 55 kDa erythrocyte memb 92.5 0.078 2.7E-06 52.6 3.9 27 172-198 18-44 (197)
337 2bdt_A BH3686; alpha-beta prot 92.4 0.069 2.4E-06 53.3 3.5 22 174-195 3-24 (189)
338 3a00_A Guanylate kinase, GMP k 92.4 0.059 2E-06 53.6 3.0 25 174-198 2-26 (186)
339 1cke_A CK, MSSA, protein (cyti 92.4 0.073 2.5E-06 54.9 3.8 25 174-198 6-30 (227)
340 2j41_A Guanylate kinase; GMP, 92.4 0.079 2.7E-06 53.7 3.9 25 173-197 6-30 (207)
341 1tue_A Replication protein E1; 92.4 0.11 3.8E-06 51.3 4.6 38 161-198 45-83 (212)
342 2f1r_A Molybdopterin-guanine d 92.3 0.074 2.5E-06 51.7 3.4 36 174-209 3-38 (171)
343 1ukz_A Uridylate kinase; trans 92.3 0.085 2.9E-06 53.3 4.1 26 172-197 14-39 (203)
344 1nn5_A Similar to deoxythymidy 92.3 0.2 6.8E-06 51.0 6.9 32 173-205 9-40 (215)
345 2zts_A Putative uncharacterize 92.3 0.2 6.9E-06 52.4 7.2 49 173-224 30-78 (251)
346 1e6c_A Shikimate kinase; phosp 92.3 0.069 2.4E-06 52.3 3.3 25 174-198 3-27 (173)
347 3asz_A Uridine kinase; cytidin 92.3 0.084 2.9E-06 53.7 4.0 27 172-198 5-31 (211)
348 1uf9_A TT1252 protein; P-loop, 92.3 0.077 2.6E-06 53.6 3.7 26 171-196 6-31 (203)
349 3cmw_A Protein RECA, recombina 92.3 0.29 9.8E-06 64.5 9.7 85 173-264 1431-1520(1706)
350 3cm0_A Adenylate kinase; ATP-b 92.2 0.083 2.8E-06 52.5 3.8 25 174-198 5-29 (186)
351 3vkg_A Dynein heavy chain, cyt 92.2 0.42 1.4E-05 66.7 11.7 89 163-265 1295-1386(3245)
352 2bwj_A Adenylate kinase 5; pho 92.2 0.079 2.7E-06 53.3 3.7 26 173-198 12-37 (199)
353 1lvg_A Guanylate kinase, GMP k 92.2 0.071 2.4E-06 53.6 3.3 26 173-198 4-29 (198)
354 2cdn_A Adenylate kinase; phosp 92.2 0.095 3.3E-06 52.8 4.3 26 173-198 20-45 (201)
355 2if2_A Dephospho-COA kinase; a 92.2 0.072 2.5E-06 53.9 3.3 22 174-195 2-23 (204)
356 2z0h_A DTMP kinase, thymidylat 92.1 0.2 6.7E-06 50.2 6.5 25 175-199 2-26 (197)
357 1rj9_A FTSY, signal recognitio 92.1 0.13 4.6E-06 55.2 5.5 28 172-199 101-128 (304)
358 2vli_A Antibiotic resistance p 92.1 0.067 2.3E-06 53.0 2.9 26 173-198 5-30 (183)
359 2bbw_A Adenylate kinase 4, AK4 92.1 0.092 3.2E-06 54.9 4.1 27 172-198 26-52 (246)
360 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.088 3E-06 55.6 3.9 26 173-198 4-29 (260)
361 2pt5_A Shikimate kinase, SK; a 92.0 0.094 3.2E-06 51.0 3.8 24 175-198 2-25 (168)
362 3tlx_A Adenylate kinase 2; str 92.0 0.16 5.6E-06 52.8 5.8 26 172-197 28-53 (243)
363 2yhs_A FTSY, cell division pro 92.0 0.94 3.2E-05 51.5 12.3 41 173-216 293-333 (503)
364 1aky_A Adenylate kinase; ATP:A 91.9 0.099 3.4E-06 53.6 4.1 26 173-198 4-29 (220)
365 2q6t_A DNAB replication FORK h 91.9 0.51 1.7E-05 54.1 10.5 51 173-226 200-250 (444)
366 3k1j_A LON protease, ATP-depen 91.9 0.1 3.5E-06 62.7 4.7 50 147-198 36-85 (604)
367 2grj_A Dephospho-COA kinase; T 91.9 0.094 3.2E-06 52.1 3.7 26 172-197 11-36 (192)
368 3cmw_A Protein RECA, recombina 91.9 0.35 1.2E-05 63.7 9.7 86 173-265 732-822 (1706)
369 1qf9_A UMP/CMP kinase, protein 91.8 0.094 3.2E-06 52.4 3.7 26 173-198 6-31 (194)
370 2pbr_A DTMP kinase, thymidylat 91.6 0.11 3.6E-06 52.1 3.9 24 175-198 2-25 (195)
371 4gp7_A Metallophosphoesterase; 91.6 0.079 2.7E-06 51.7 2.8 21 173-193 9-29 (171)
372 1jjv_A Dephospho-COA kinase; P 91.6 0.091 3.1E-06 53.2 3.3 22 174-195 3-24 (206)
373 2qt1_A Nicotinamide riboside k 91.6 0.098 3.3E-06 53.0 3.5 25 173-197 21-45 (207)
374 2wwf_A Thymidilate kinase, put 91.6 0.11 3.8E-06 52.8 4.0 32 173-205 10-41 (212)
375 1htw_A HI0065; nucleotide-bind 91.6 0.12 3.9E-06 49.6 3.8 26 172-197 32-57 (158)
376 2p5t_B PEZT; postsegregational 91.6 0.13 4.4E-06 54.1 4.5 26 173-198 32-57 (253)
377 1np6_A Molybdopterin-guanine d 91.5 0.22 7.4E-06 48.5 5.7 27 173-199 6-32 (174)
378 3fb4_A Adenylate kinase; psych 91.5 0.11 3.8E-06 53.1 3.8 24 175-198 2-25 (216)
379 4e22_A Cytidylate kinase; P-lo 91.4 0.12 4E-06 54.3 4.0 27 172-198 26-52 (252)
380 1znw_A Guanylate kinase, GMP k 91.4 0.11 3.9E-06 52.5 3.8 27 172-198 19-45 (207)
381 1zd8_A GTP:AMP phosphotransfer 91.3 0.11 3.7E-06 53.6 3.6 25 173-197 7-31 (227)
382 3aez_A Pantothenate kinase; tr 91.3 0.13 4.4E-06 55.7 4.3 42 172-213 89-130 (312)
383 1zak_A Adenylate kinase; ATP:A 91.3 0.11 3.6E-06 53.5 3.5 26 173-198 5-30 (222)
384 2jeo_A Uridine-cytidine kinase 91.3 0.12 4E-06 54.0 3.9 26 172-197 24-49 (245)
385 3tqc_A Pantothenate kinase; bi 91.3 0.12 4.2E-06 55.7 4.0 42 173-214 92-133 (321)
386 1z6g_A Guanylate kinase; struc 91.3 0.098 3.4E-06 53.5 3.2 25 173-197 23-47 (218)
387 3end_A Light-independent proto 91.3 0.24 8.3E-06 53.7 6.5 44 170-215 38-81 (307)
388 2i3b_A HCR-ntpase, human cance 91.2 0.11 3.9E-06 51.4 3.4 25 174-198 2-26 (189)
389 1g41_A Heat shock protein HSLU 91.1 0.15 5.2E-06 57.4 4.7 46 153-198 16-75 (444)
390 3sr0_A Adenylate kinase; phosp 91.1 0.13 4.5E-06 51.7 3.8 24 175-198 2-25 (206)
391 1g5t_A COB(I)alamin adenosyltr 91.1 0.087 3E-06 51.8 2.3 113 174-299 29-164 (196)
392 1gtv_A TMK, thymidylate kinase 91.1 0.073 2.5E-06 54.3 1.9 24 175-198 2-25 (214)
393 1s96_A Guanylate kinase, GMP k 91.1 0.13 4.4E-06 52.4 3.7 27 172-198 15-41 (219)
394 1uj2_A Uridine-cytidine kinase 91.0 0.13 4.3E-06 54.1 3.7 27 172-198 21-47 (252)
395 3dl0_A Adenylate kinase; phosp 91.0 0.13 4.4E-06 52.6 3.7 23 175-197 2-24 (216)
396 1m7g_A Adenylylsulfate kinase; 90.9 0.15 5.3E-06 51.7 4.2 28 171-198 23-50 (211)
397 2v54_A DTMP kinase, thymidylat 90.8 0.14 4.7E-06 51.7 3.7 25 173-197 4-28 (204)
398 3r20_A Cytidylate kinase; stru 90.8 0.14 4.9E-06 52.3 3.8 26 173-198 9-34 (233)
399 3b9q_A Chloroplast SRP recepto 90.8 0.17 5.7E-06 54.5 4.5 28 172-199 99-126 (302)
400 2r6a_A DNAB helicase, replicat 90.8 0.85 2.9E-05 52.4 10.7 49 173-224 203-251 (454)
401 3p32_A Probable GTPase RV1496/ 90.7 0.39 1.3E-05 53.2 7.6 38 161-198 65-104 (355)
402 3nwj_A ATSK2; P loop, shikimat 90.6 0.13 4.4E-06 53.5 3.3 26 173-198 48-73 (250)
403 2pez_A Bifunctional 3'-phospho 90.6 0.15 5.2E-06 50.1 3.7 27 173-199 5-31 (179)
404 1zu4_A FTSY; GTPase, signal re 90.5 0.22 7.5E-06 54.0 5.2 39 172-212 104-142 (320)
405 1q57_A DNA primase/helicase; d 90.5 0.86 2.9E-05 53.3 10.7 56 173-231 242-298 (503)
406 3ake_A Cytidylate kinase; CMP 90.5 0.16 5.4E-06 51.5 3.8 25 174-198 3-27 (208)
407 1vht_A Dephospho-COA kinase; s 90.5 0.16 5.4E-06 51.9 3.9 23 173-195 4-26 (218)
408 3d3q_A TRNA delta(2)-isopenten 90.4 0.15 5.2E-06 55.1 3.7 25 174-198 8-32 (340)
409 3vr4_D V-type sodium ATPase su 90.2 0.42 1.4E-05 53.5 7.1 89 174-265 152-260 (465)
410 1ak2_A Adenylate kinase isoenz 90.2 0.19 6.5E-06 52.0 4.2 26 173-198 16-41 (233)
411 2xb4_A Adenylate kinase; ATP-b 90.2 0.17 5.9E-06 51.9 3.8 24 175-198 2-25 (223)
412 3be4_A Adenylate kinase; malar 90.1 0.17 5.6E-06 51.8 3.6 25 174-198 6-30 (217)
413 1e4v_A Adenylate kinase; trans 90.1 0.17 5.7E-06 51.6 3.6 23 175-197 2-24 (214)
414 2f6r_A COA synthase, bifunctio 90.0 0.16 5.5E-06 54.2 3.6 24 172-195 74-97 (281)
415 3lv8_A DTMP kinase, thymidylat 90.0 0.51 1.7E-05 48.4 7.1 36 173-209 27-62 (236)
416 3crm_A TRNA delta(2)-isopenten 90.0 0.17 5.8E-06 54.4 3.7 24 174-197 6-29 (323)
417 4eaq_A DTMP kinase, thymidylat 90.0 0.34 1.2E-05 49.8 5.8 28 172-199 25-52 (229)
418 3bgw_A DNAB-like replicative h 89.9 1.4 4.9E-05 50.1 11.5 40 173-214 197-236 (444)
419 2onk_A Molybdate/tungstate ABC 89.8 0.18 6.1E-06 52.2 3.6 24 174-197 25-48 (240)
420 1cr0_A DNA primase/helicase; R 89.8 0.47 1.6E-05 51.1 7.1 51 172-225 34-84 (296)
421 3exa_A TRNA delta(2)-isopenten 89.8 0.19 6.5E-06 53.4 3.7 25 173-197 3-27 (322)
422 2og2_A Putative signal recogni 89.8 0.22 7.7E-06 54.6 4.5 27 173-199 157-183 (359)
423 2r8r_A Sensor protein; KDPD, P 89.7 0.27 9.2E-06 49.5 4.6 40 175-216 8-47 (228)
424 3lnc_A Guanylate kinase, GMP k 89.6 0.13 4.5E-06 53.1 2.4 25 173-197 27-52 (231)
425 1a7j_A Phosphoribulokinase; tr 89.4 0.14 4.9E-06 54.7 2.6 42 172-215 4-45 (290)
426 3b85_A Phosphate starvation-in 89.4 0.16 5.3E-06 51.3 2.6 24 173-196 22-45 (208)
427 1sq5_A Pantothenate kinase; P- 89.3 0.2 6.9E-06 54.3 3.7 42 172-214 79-121 (308)
428 3foz_A TRNA delta(2)-isopenten 89.3 0.22 7.5E-06 52.8 3.7 25 173-197 10-34 (316)
429 3tif_A Uncharacterized ABC tra 89.3 0.19 6.4E-06 51.9 3.2 35 172-209 30-64 (235)
430 2c61_A A-type ATP synthase non 89.3 0.26 9E-06 55.4 4.6 102 164-265 142-261 (469)
431 3a8t_A Adenylate isopentenyltr 89.2 0.2 6.7E-06 54.0 3.4 25 173-197 40-64 (339)
432 4tmk_A Protein (thymidylate ki 89.2 0.61 2.1E-05 47.1 6.8 52 174-226 4-55 (213)
433 3vr4_A V-type sodium ATPase ca 89.2 1.2 4.2E-05 51.0 9.9 97 164-264 222-340 (600)
434 3gqb_B V-type ATP synthase bet 89.2 0.58 2E-05 52.3 7.2 92 174-265 148-263 (464)
435 2pcj_A ABC transporter, lipopr 89.0 0.17 5.8E-06 51.8 2.6 34 173-209 30-63 (224)
436 1nlf_A Regulatory protein REPA 88.9 0.39 1.3E-05 51.2 5.6 42 173-214 30-79 (279)
437 3iqw_A Tail-anchored protein t 88.9 0.51 1.7E-05 51.4 6.4 48 170-219 13-60 (334)
438 2cbz_A Multidrug resistance-as 88.8 0.21 7.2E-06 51.6 3.2 26 172-197 30-55 (237)
439 3mfy_A V-type ATP synthase alp 88.7 0.88 3E-05 51.9 8.3 97 164-265 217-336 (588)
440 2v9p_A Replication protein E1; 88.7 0.25 8.6E-06 52.8 3.8 26 172-197 125-150 (305)
441 3upu_A ATP-dependent DNA helic 88.7 0.55 1.9E-05 54.2 7.0 43 158-201 31-73 (459)
442 1yrb_A ATP(GTP)binding protein 88.6 0.37 1.3E-05 50.8 5.1 27 172-198 13-39 (262)
443 4gzl_A RAS-related C3 botulinu 88.6 0.24 8.1E-06 50.0 3.4 37 160-196 17-53 (204)
444 4edh_A DTMP kinase, thymidylat 88.6 0.76 2.6E-05 46.4 7.1 32 173-205 6-37 (213)
445 1oix_A RAS-related protein RAB 88.5 0.24 8.1E-06 49.3 3.3 24 174-197 30-53 (191)
446 1cp2_A CP2, nitrogenase iron p 88.5 0.49 1.7E-05 50.1 6.0 40 174-215 2-41 (269)
447 1u0j_A DNA replication protein 88.5 0.49 1.7E-05 49.1 5.6 37 161-197 90-128 (267)
448 3gfo_A Cobalt import ATP-bindi 88.5 0.2 6.8E-06 53.0 2.8 25 173-197 34-58 (275)
449 2eyu_A Twitching motility prot 88.4 0.42 1.4E-05 50.1 5.3 28 171-198 23-50 (261)
450 1b0u_A Histidine permease; ABC 88.4 0.22 7.7E-06 52.3 3.2 35 172-209 31-65 (262)
451 2d2e_A SUFC protein; ABC-ATPas 88.3 0.24 8.3E-06 51.7 3.3 24 173-196 29-52 (250)
452 3io3_A DEHA2D07832P; chaperone 88.3 0.62 2.1E-05 51.0 6.7 50 170-219 15-64 (348)
453 2olj_A Amino acid ABC transpor 88.2 0.24 8.1E-06 52.0 3.2 35 172-209 49-83 (263)
454 3ld9_A DTMP kinase, thymidylat 88.2 0.62 2.1E-05 47.2 6.1 29 171-199 19-47 (223)
455 2zu0_C Probable ATP-dependent 88.1 0.28 9.6E-06 51.7 3.7 25 172-196 45-69 (267)
456 1sgw_A Putative ABC transporte 88.1 0.19 6.4E-06 50.9 2.2 25 173-197 35-59 (214)
457 1ji0_A ABC transporter; ATP bi 88.1 0.22 7.5E-06 51.6 2.8 34 173-209 32-65 (240)
458 3oaa_A ATP synthase subunit al 88.0 2.2 7.5E-05 48.2 10.8 98 164-265 152-266 (513)
459 4g1u_C Hemin import ATP-bindin 88.0 0.22 7.5E-06 52.4 2.8 25 173-197 37-61 (266)
460 1ltq_A Polynucleotide kinase; 88.0 0.26 8.9E-06 53.3 3.5 23 174-196 3-25 (301)
461 1q3t_A Cytidylate kinase; nucl 88.0 0.34 1.2E-05 50.1 4.2 27 172-198 15-41 (236)
462 1g6h_A High-affinity branched- 88.0 0.22 7.7E-06 52.2 2.8 34 173-209 33-66 (257)
463 2qmh_A HPR kinase/phosphorylas 88.0 0.21 7.3E-06 49.0 2.4 25 173-197 34-58 (205)
464 2pze_A Cystic fibrosis transme 87.9 0.23 7.9E-06 51.0 2.8 25 173-197 34-58 (229)
465 1svm_A Large T antigen; AAA+ f 87.9 0.5 1.7E-05 52.3 5.7 27 171-197 167-193 (377)
466 2ff7_A Alpha-hemolysin translo 87.8 0.23 8E-06 51.6 2.8 34 173-209 35-68 (247)
467 1mv5_A LMRA, multidrug resista 87.8 0.26 9E-06 51.2 3.1 26 172-197 27-52 (243)
468 1vpl_A ABC transporter, ATP-bi 87.7 0.27 9.1E-06 51.4 3.2 26 172-197 40-65 (256)
469 2f9l_A RAB11B, member RAS onco 87.7 0.3 1E-05 48.9 3.5 23 174-196 6-28 (199)
470 3eph_A TRNA isopentenyltransfe 87.6 0.3 1E-05 54.0 3.6 25 174-198 3-27 (409)
471 2ghi_A Transport protein; mult 87.6 0.27 9.3E-06 51.6 3.2 26 172-197 45-70 (260)
472 2ged_A SR-beta, signal recogni 87.5 0.56 1.9E-05 46.6 5.4 25 172-196 47-71 (193)
473 2dyk_A GTP-binding protein; GT 87.5 0.33 1.1E-05 46.4 3.6 23 174-196 2-24 (161)
474 1g8f_A Sulfate adenylyltransfe 87.5 0.55 1.9E-05 54.1 5.8 44 155-198 375-420 (511)
475 2ixe_A Antigen peptide transpo 87.5 0.28 9.6E-06 51.8 3.2 35 172-209 44-78 (271)
476 2wji_A Ferrous iron transport 87.4 0.31 1.1E-05 47.0 3.3 23 174-196 4-26 (165)
477 2v3c_C SRP54, signal recogniti 87.4 0.24 8.1E-06 56.2 2.8 38 173-212 99-136 (432)
478 2qi9_C Vitamin B12 import ATP- 87.4 0.25 8.7E-06 51.3 2.8 26 173-198 26-51 (249)
479 3cwq_A Para family chromosome 87.4 0.73 2.5E-05 46.5 6.2 43 175-220 2-45 (209)
480 2orw_A Thymidine kinase; TMTK, 87.4 0.42 1.4E-05 47.1 4.2 26 174-199 4-29 (184)
481 2ck3_A ATP synthase subunit al 87.2 1.2 4.2E-05 50.5 8.3 102 164-265 152-274 (510)
482 2afh_E Nitrogenase iron protei 87.2 0.53 1.8E-05 50.4 5.3 41 173-215 2-42 (289)
483 2yz2_A Putative ABC transporte 87.2 0.3 1E-05 51.5 3.2 26 172-197 32-57 (266)
484 2qe7_A ATP synthase subunit al 87.1 2.1 7E-05 48.5 10.0 98 164-265 152-266 (502)
485 2nq2_C Hypothetical ABC transp 87.0 0.27 9.2E-06 51.3 2.7 25 173-197 31-55 (253)
486 2ihy_A ABC transporter, ATP-bi 87.0 0.27 9.3E-06 52.1 2.8 34 173-209 47-80 (279)
487 2zej_A Dardarin, leucine-rich 86.9 0.27 9.1E-06 48.6 2.5 22 175-196 4-25 (184)
488 3zvl_A Bifunctional polynucleo 86.9 0.26 8.9E-06 55.9 2.7 27 171-197 256-282 (416)
489 4dzz_A Plasmid partitioning pr 86.8 0.55 1.9E-05 47.2 4.9 44 174-219 2-46 (206)
490 3sop_A Neuronal-specific septi 86.7 0.33 1.1E-05 51.2 3.3 24 175-198 4-27 (270)
491 3hjn_A DTMP kinase, thymidylat 86.7 0.88 3E-05 45.3 6.2 27 175-201 2-28 (197)
492 3gmt_A Adenylate kinase; ssgci 86.6 0.43 1.5E-05 48.5 3.8 25 174-198 9-33 (230)
493 2ocp_A DGK, deoxyguanosine kin 86.5 0.4 1.4E-05 49.8 3.7 26 173-198 2-27 (241)
494 3kjh_A CO dehydrogenase/acetyl 86.3 0.71 2.4E-05 48.2 5.6 42 176-219 3-44 (254)
495 1tq4_A IIGP1, interferon-induc 86.2 0.47 1.6E-05 53.1 4.3 25 172-196 68-92 (413)
496 2ce2_X GTPase HRAS; signaling 86.0 0.38 1.3E-05 46.1 3.1 22 175-196 5-26 (166)
497 1z2a_A RAS-related protein RAB 86.0 0.41 1.4E-05 46.2 3.2 23 174-196 6-28 (168)
498 2axn_A 6-phosphofructo-2-kinas 86.0 0.72 2.5E-05 53.8 5.8 27 172-198 34-60 (520)
499 3v9p_A DTMP kinase, thymidylat 85.9 0.75 2.6E-05 46.8 5.3 27 173-199 25-51 (227)
500 3cr8_A Sulfate adenylyltranfer 85.9 0.66 2.3E-05 54.2 5.5 27 172-198 368-394 (552)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.3e-44 Score=430.15 Aligned_cols=309 Identities=15% Similarity=0.145 Sum_probs=243.1
Q ss_pred CCChHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHH--HHhhcCCCcEEEEEEecCCC--CHHHHHHHHHHH
Q 000975 155 PSRNPVFQKMMESLRDS---NVNMIGLYGMGGVGKTTLVKVVAR--QVVKEDLFDVVVDAEVTHTP--DWKEICGRIADQ 227 (1205)
Q Consensus 155 ~gr~~~~~~l~~~l~~~---~~~vi~i~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 227 (1205)
+||+.++++|.++|... ..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999743 579999999999999999999998 46677999999999999985 789999999999
Q ss_pred hCCCCC-------CCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhH
Q 000975 228 LGLEIV-------RPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (1205)
Q Consensus 228 l~~~~~-------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v 300 (1205)
++.... ...+.......+.+.+...|||||||||||+.+++ .+ . ..+||+||||||++.+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~-----~-------~~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW-----A-------QELRLRCLVTTRDVEI 277 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH-----H-------HHTTCEEEEEESBGGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc-----c-------ccCCCEEEEEcCCHHH
Confidence 986532 11133445677888887334999999999998765 22 1 2479999999999999
Q ss_pred HhhcCC-CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHHHHHHH
Q 000975 301 LRINMS-NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINWLR 379 (1205)
Q Consensus 301 ~~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~ 379 (1205)
+.. ++ ...+|+|++|+++|||+||.++++.....+..++++++|+++|+|+||||+++|+.++.+. |+.+ +.+.
T Consensus 278 ~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~ 352 (549)
T 2a5y_B 278 SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLN 352 (549)
T ss_dssp GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHH
T ss_pred HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhH
Confidence 873 54 4468999999999999999999865444477888999999999999999999999998763 5443 3333
Q ss_pred hcCCCcccccccchhhHHhhhhcCcHHHHHHHH-----------HhcccCCCCccCHHHHHHHHHHc--cccccc---ch
Q 000975 380 KSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQ-----------LCGLLNDGSRLPIDDLIRYVFAL--DNLFTG---ID 443 (1205)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~-----------~~s~fp~~~~i~~~~li~~w~a~--g~~~~~---~~ 443 (1205)
... +.. ......+++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ | ++.. ..
T Consensus 353 ~~l-~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G-~i~~~~~~~ 425 (549)
T 2a5y_B 353 NKL-ESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPV-DICSNEEEQ 425 (549)
T ss_dssp HHH-HHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--------CC
T ss_pred HHh-hcc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccc-eeccCCCCC
Confidence 221 000 1233488999999999999999999 999999999999 8999999 8 5542 22
Q ss_pred hHHHHHHHHHHHHHhhccccccccCC--CCCcEEEehHHHHHHHHHhcccc
Q 000975 444 TLEVARNRVYTLMDHLKGPCLLLNGD--TEDHVKMHQIIHALAVLIASDKL 492 (1205)
Q Consensus 444 ~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~~~~~~~~~~~~ 492 (1205)
+.+++.+ ++++|++++|++... ...+|+|||+||++|+.++.+++
T Consensus 426 ~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 426 LDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 3343333 589999999998642 34679999999999999887654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.8e-37 Score=384.99 Aligned_cols=432 Identities=14% Similarity=0.082 Sum_probs=249.3
Q ss_pred CCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCCh-hhhhCCCceeEEEeeCCCCC-Cccccc-CCCcCCcEE
Q 000975 512 KNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPN-QFFDGMTELLVLHLTGIHFP-SLPLSL-GSLINLRTL 587 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~-~~~~~l~~Lr~L~Ls~~~i~-~lp~~i-~~L~~Lr~L 587 (1205)
+.++.++++.+.+..+|..+ .+++|++|++++|.+.+.+|. ..+.++++|++|+|++|.+. ..|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 45666666666655555555 778888888888877766665 13477888888888888775 345444 677888888
Q ss_pred EccCCcCCC--Ccc---ccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCC
Q 000975 588 SFDCCHLED--VAR---VGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 588 ~L~~~~l~~--~~~---i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
+|++|.++. +.. ++++++|++|++++|.+..... +.++++|++|++++|. +...++. ++++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCC
Confidence 888887766 233 6777888888888877664432 3677888888888765 4443334 777888888888777
Q ss_pred cCccccCCCccchHhhccCCCCcEEEEecchh-----hhccccccccccccceEEEccccccCCc-cCccceEEeeccCc
Q 000975 663 FTRKVEGQSNASVVELKQLSSLTILDMHIPDA-----QLLLEDLISLDLERYRIFIGDVWNWSGK-YECSRTLKLKLDNS 736 (1205)
Q Consensus 663 ~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~-----~~~~~~L~~l~L~~~~i~~~~~~~~~~~-~~~l~~l~L~~~~~ 736 (1205)
.+.... ...+..+++|+.|+++.... ...+++|+.+++++|.+. +..+.+... ...++.+.+..+..
T Consensus 234 ~l~~~~------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~-~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 234 KLSGDF------SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp CCCSCH------HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE-ESCCCCSCTTCTTCSEEECCSSEE
T ss_pred cCCCcc------cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC-CccCHHHHhhcCcCCEEECcCCcC
Confidence 654221 24667777777777762211 114566777777777764 233444333 26677777766654
Q ss_pred ccchhhHHHHhhhhchhhcccccCchhhhhh-hccCCCccccceEEeecCCceeEeecCCCCCccc-ccccccccccccc
Q 000975 737 IYLGYGIKKLLKTTEDLYLDNLNGIQNIVQE-LDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFP-LLQSLFLCNLILL 814 (1205)
Q Consensus 737 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~l 814 (1205)
....+.....+++|+.|++.++.....++.. + ..+++|++|++++|.-...++. ....++ +|+.|+++++.--
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l---~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTL---LKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHH---TTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEE
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHH---hcCCCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcC
Confidence 4332222334577778887776544333322 4 6778888888887732212221 112233 6777777764321
Q ss_pred cceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeec
Q 000975 815 EKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNF 894 (1205)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 894 (1205)
..+.. . .....+++|++|++++|.-...+|. .+..+++|++|++++|.....++. .+..+
T Consensus 382 ~~~~~-~----~~~~~~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~-------------~l~~l 441 (768)
T 3rgz_A 382 GPILP-N----LCQNPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPS-------------SLGSL 441 (768)
T ss_dssp EECCT-T----TTCSTTCCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCG-------------GGGGC
T ss_pred CCcCh-h----hhhcccCCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccH-------------HHhcC
Confidence 11111 0 0112256777777777743223333 346677777777777643322221 12456
Q ss_pred cccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCC
Q 000975 895 NHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQ 974 (1205)
Q Consensus 895 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~ 974 (1205)
++|+.|+++++.--..++. ....+++|++|++++|.+++..+..+. .++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~---------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~----~l~ 490 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQ---------------------------ELMYVKTLETLILDFNDLTGEIPSGLS----NCT 490 (768)
T ss_dssp TTCCEEECCSSCCCSCCCG---------------------------GGGGCTTCCEEECCSSCCCSCCCGGGG----GCT
T ss_pred CCCCEEECCCCcccCcCCH---------------------------HHcCCCCceEEEecCCcccCcCCHHHh----cCC
Confidence 6777777766543222221 112345566666666655544333332 455
Q ss_pred CccEEEecccCCcccccchhhHHhhccccEEEEcccc
Q 000975 975 QLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCA 1011 (1205)
Q Consensus 975 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 1011 (1205)
+|++|++++| +++...| ..+..+++|++|++++|.
T Consensus 491 ~L~~L~L~~N-~l~~~~p-~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 491 NLNWISLSNN-RLTGEIP-KWIGRLENLAILKLSNNS 525 (768)
T ss_dssp TCCEEECCSS-CCCSCCC-GGGGGCTTCCEEECCSSC
T ss_pred CCCEEEccCC-ccCCcCC-hHHhcCCCCCEEECCCCc
Confidence 5666666553 3332212 234555566666665554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-35 Score=369.22 Aligned_cols=573 Identities=16% Similarity=0.137 Sum_probs=382.4
Q ss_pred hcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 586 (1205)
.+.++++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|+|++|.++.+|. .|+++++|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 456788888888888887764 3 7888888888888877 4444556888888888888888888876 4888888888
Q ss_pred EEccCCcCCC--CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhc--CCCCCCEEEccC
Q 000975 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVIS--RLSRLNELYMGN 661 (1205)
Q Consensus 587 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~--~L~~L~~L~l~~ 661 (1205)
|++++|.+.. +..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..+++..++ .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCC
Confidence 8888888877 36788888888888888888755 4567888888888888865 6666665444 557888888888
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEecchhh----------hccccccccccccceEEEccccccCCccCccceEEe
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQ----------LLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKL 731 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~----------~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L 731 (1205)
|.+..++. ..+..+.+|+.|++...... ...+.|+.++++++.+....
T Consensus 181 n~l~~~~~------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~---------------- 238 (680)
T 1ziw_A 181 NQIKEFSP------GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS---------------- 238 (680)
T ss_dssp CCCCCBCT------TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC----------------
T ss_pred CcccccCh------hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC----------------
Confidence 87665442 45566677777766421100 01245566666665542110
Q ss_pred eccCcccchhhHHHHh--hhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCccccccccccc
Q 000975 732 KLDNSIYLGYGIKKLL--KTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLC 809 (1205)
Q Consensus 732 ~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 809 (1205)
+.++ ..+ ++|+.|+++++.........+ +.+++|++|++++|. +..... .....+++|+.|.+.
T Consensus 239 --------~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 239 --------NTTF-LGLKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNN-IQHLFS-HSLHGLFNVRYLNLK 304 (680)
T ss_dssp --------TTTT-GGGGGSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCC-BSEECT-TTTTTCTTCCEEECT
T ss_pred --------hhHh-hccCcCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCc-cCccCh-hhhcCCCCccEEecc
Confidence 1111 112 348888888775443333344 778999999999884 333321 134567888888887
Q ss_pred ccccccceecccccc--ccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccc-hhhhhcccCCCCcccC
Q 000975 810 NLILLEKVCGSQVQL--TEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKI-LRMIVGEETDNHDHEN 886 (1205)
Q Consensus 810 ~~~~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~ 886 (1205)
++..-..+....++. ......+++|++|++++| .+..+++. .+..+++|++|++++|.. +..++....
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f------- 375 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETF------- 375 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTT-------
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh-HhccccCCcEEECCCCchhhhhcchhhh-------
Confidence 632111111000100 011256899999999998 46666543 357899999999998752 222221100
Q ss_pred CccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeecccccccc-CCCC
Q 000975 887 GSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERI-WPNQ 965 (1205)
Q Consensus 887 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~ 965 (1205)
.-...++|+.|+++++. +..+.. .....+++|+.|++++|.++.. ....
T Consensus 376 ---~~~~~~~L~~L~L~~n~-l~~~~~--------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 376 ---VSLAHSPLHILNLTKNK-ISKIES--------------------------DAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp ---GGGTTSCCCEEECTTSC-CCEECT--------------------------TTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred ---cccccCcCceEECCCCC-CCeECh--------------------------hhhhCCCCCCEEeCCCCcCccccCccc
Confidence 00122578888887764 333221 1124578999999999988753 3334
Q ss_pred CCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCC
Q 000975 966 FPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQ 1045 (1205)
Q Consensus 966 ~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 1045 (1205)
+. .+++|++|++++| +++.+++ ..+..+++|+.|++++|. +..+.. .......+++|+.|++++ +.
T Consensus 426 ~~----~l~~L~~L~Ls~n-~l~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~------~p~~~~~l~~L~~L~Ls~-N~ 491 (680)
T 1ziw_A 426 WR----GLENIFEIYLSYN-KYLQLTR-NSFALVPSLQRLMLRRVA-LKNVDS------SPSPFQPLRNLTILDLSN-NN 491 (680)
T ss_dssp GT----TCTTCCEEECCSC-SEEECCT-TTTTTCTTCCEEECTTSC-CBCTTC------SSCTTTTCTTCCEEECCS-SC
T ss_pred cc----CcccccEEecCCC-CcceeCh-hhhhcCcccccchhcccc-cccccc------CCcccccCCCCCEEECCC-CC
Confidence 43 7899999999995 6777644 456788999999998865 221110 001134589999999999 46
Q ss_pred ccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCC
Q 000975 1046 LSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLA 1125 (1205)
Q Consensus 1046 L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 1125 (1205)
++.++...+.++++|++|+++++ +++.++...+.+.+ ...+..+++|+.|++++| .++.++...+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~------------~~~~~~l~~L~~L~L~~N-~l~~i~~~~~- 556 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGP------------IYFLKGLSHLHILNLESN-GFDEIPVEVF- 556 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSC------------CCTTTTCTTCCEEECCSS-CCCCCCTTTT-
T ss_pred CCcCChhhhccccccCEEeCCCC-CccccchhhccCCc------------chhhcCCCCCCEEECCCC-CCCCCCHHHc-
Confidence 78888777889999999999985 46655421111000 012466899999999998 5666765443
Q ss_pred CCcccCccEEEecccccccccccchhHhhccCCcEEEEecCCCceeeeeccCccc-ccccccEEEeccCC
Q 000975 1126 SGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECESLKEITEKADHRK-AFSQSISLKLVKLP 1194 (1205)
Q Consensus 1126 ~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~~l~~~~~~~~~~~-~~~~L~~l~i~~~p 1194 (1205)
+.+++|+.|++++ .+++. +|.+.+.++++|+.|++++| .++.++...- . .+++|+.+++.++|
T Consensus 557 -~~l~~L~~L~Ls~-N~l~~-l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 557 -KDLFELKIIDLGL-NNLNT-LPASVFNNQVSLKSLNLQKN-LITSVEKKVF--GPAFRNLTELDMRFNP 620 (680)
T ss_dssp -TTCTTCCEEECCS-SCCCC-CCTTTTTTCTTCCEEECTTS-CCCBCCHHHH--HHHHTTCSEEECTTCC
T ss_pred -ccccCcceeECCC-CCCCc-CCHhHhCCCCCCCEEECCCC-cCCccChhHh--cccccccCEEEccCCC
Confidence 4589999999988 46887 67777889999999999996 7777765421 1 46788888887755
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-36 Score=378.27 Aligned_cols=592 Identities=17% Similarity=0.061 Sum_probs=370.2
Q ss_pred CCCcEEEccCCCCCC----CCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-Cccc--ccCCCcC
Q 000975 512 KNPTAISIPFRDISE----LPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPL--SLGSLIN 583 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~----l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~--~i~~L~~ 583 (1205)
.+++.++++++.+.. +|+.+ ++++|+.++++.+.+. .+|.. |..+++|++|+|++|.+. .+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 357778887776644 44433 6777777777777654 34444 478888888888888876 4666 7888888
Q ss_pred CcEEEccCCcCCC--Cccc-cccccCcEEEcccCCCCcc-chh---ccCCCccCEEeccCCCCCCccChhhhcCCCCCCE
Q 000975 584 LRTLSFDCCHLED--VARV-GDLAKLEILSFRNSHIEQL-PEQ---IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNE 656 (1205)
Q Consensus 584 Lr~L~L~~~~l~~--~~~i-~~L~~L~~L~L~~~~l~~l-p~~---i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~ 656 (1205)
|++|+|++|.+.. |..+ +++++|++|++++|.++.. |.. +.++++|++|++++|. +....+ ++++++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCCE
Confidence 8888888888765 3333 7888888888888888754 333 6788888888888865 444333 478888888
Q ss_pred EEccCCcCccccCCCccchHhhccCCCCcEEEEec-------chhhhccccccccccccceEEEccccccCCccCccceE
Q 000975 657 LYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTL 729 (1205)
Q Consensus 657 L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~-------~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l 729 (1205)
|++++|.+.... ..+.++++|+.|+++. +..+..+++|+.+++++|.+.. ..+.+ ....++.+
T Consensus 205 L~Ls~n~l~~~~-------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 205 LDVSSNNFSTGI-------PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYL 274 (768)
T ss_dssp EECCSSCCCSCC-------CBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEE
T ss_pred EECcCCcCCCCC-------cccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEE
Confidence 888888665422 2367788888888862 3345567778888888887642 22222 45567777
Q ss_pred EeeccCcc-cchhhHHHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccc
Q 000975 730 KLKLDNSI-YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFL 808 (1205)
Q Consensus 730 ~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l 808 (1205)
.+..+... ..+.++...+++|++|+++++......+..+ +.+++|++|++++|.-...++.. ....+++|+.|++
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~~L~L 350 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSLLESLALSSNNFSGELPMD-TLLKMRGLKVLDL 350 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG---GGCTTCCEEECCSSEEEEECCHH-HHTTCTTCCEEEC
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH---hcCCCccEEECCCCcccCcCCHH-HHhcCCCCCEEeC
Confidence 77666544 3344444445788888888776544444455 67888888888888432233211 1345677888888
Q ss_pred cccccccceeccccccccccccCC-CcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCC
Q 000975 809 CNLILLEKVCGSQVQLTEDNRSFT-NLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENG 887 (1205)
Q Consensus 809 ~~~~~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 887 (1205)
.++.-...++.. ...++ +|+.|++++|.-...+++......+++|++|++++|.....++.
T Consensus 351 s~n~l~~~~p~~-------l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~----------- 412 (768)
T 3rgz_A 351 SFNEFSGELPES-------LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP----------- 412 (768)
T ss_dssp CSSEEEECCCTT-------HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-----------
T ss_pred cCCccCccccHH-------HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-----------
Confidence 775322122111 13344 78888888875333344321112267788888888765433331
Q ss_pred ccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCC
Q 000975 888 SMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFP 967 (1205)
Q Consensus 888 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 967 (1205)
.+..+++|+.|+++++.--..++. ....+++|+.|++++|.+++..+..+.
T Consensus 413 --~l~~l~~L~~L~Ls~N~l~~~~p~---------------------------~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 413 --TLSNCSELVSLHLSFNYLSGTIPS---------------------------SLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp --GGGGCTTCCEEECCSSEEESCCCG---------------------------GGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred --HHhcCCCCCEEECcCCcccCcccH---------------------------HHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 125577888888877642212221 123477888888888887765554443
Q ss_pred CccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCcc
Q 000975 968 ATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLS 1047 (1205)
Q Consensus 968 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 1047 (1205)
.+++|++|++++| +++...+ ..+..+++|+.|++++|.-...++. ....+++|+.|++++|.-..
T Consensus 464 ----~l~~L~~L~L~~N-~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~---------~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 464 ----YVKTLETLILDFN-DLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPK---------WIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp ----GCTTCCEEECCSS-CCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCG---------GGGGCTTCCEEECCSSCCEE
T ss_pred ----CCCCceEEEecCC-cccCcCC-HHHhcCCCCCEEEccCCccCCcCCh---------HHhcCCCCCEEECCCCcccC
Confidence 6788888888885 5553323 3467788888888888764333322 12347888888888864433
Q ss_pred ccCCCcccCCCCcceeeeccCcccccccccccccccCC---CC-------------------------------------
Q 000975 1048 RFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSG---GN------------------------------------- 1087 (1205)
Q Consensus 1048 ~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~---~~------------------------------------- 1087 (1205)
.++ ..+..+++|+.|++++|+-...+|.......... ..
T Consensus 529 ~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 443 5677888888888888765545553221100000 00
Q ss_pred --------CCCC-cccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccchhHhhccCC
Q 000975 1088 --------YHGD-TQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKL 1158 (1205)
Q Consensus 1088 --------~~~~-~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL 1158 (1205)
..+. ....|..+..+++|+.|++++|.--..+|... +.+++|+.|++++|. ++..+|.. ++++++|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l---~~l~~L~~L~Ls~N~-l~g~ip~~-l~~L~~L 682 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI---GSMPYLFILNLGHND-ISGSIPDE-VGDLRGL 682 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG---GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH---hccccCCEEeCcCCc-cCCCCChH-HhCCCCC
Confidence 0000 01112344556778888888774333444332 557788888888754 44336654 6778888
Q ss_pred cEEEEecCCCceeeeeccCcccccccccEEEeccC
Q 000975 1159 EHLSVIECESLKEITEKADHRKAFSQSISLKLVKL 1193 (1205)
Q Consensus 1159 ~~L~i~~C~~l~~~~~~~~~~~~~~~L~~l~i~~~ 1193 (1205)
+.|++++|.--..+|... ..+++|++++++++
T Consensus 683 ~~LdLs~N~l~g~ip~~l---~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAM---SALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCEECCCGGG---GGCCCCSEEECCSS
T ss_pred CEEECCCCcccCcCChHH---hCCCCCCEEECcCC
Confidence 888887765444565544 45667777777665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-36 Score=364.50 Aligned_cols=283 Identities=20% Similarity=0.207 Sum_probs=222.8
Q ss_pred cCCChHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE-EEEEEecCCCCHHHHHHHHHHHhCCC
Q 000975 154 FPSRNPVFQKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHTPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (1205)
.+||++++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 38999999999999975 55789999999999999999999998777788986 99999999999888888887754211
Q ss_pred ---C----CCCCC----HHHHHHHHHHHHH--cCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCch
Q 000975 232 ---I----VRPDS----LVEKANQLRQALK--KKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (1205)
Q Consensus 232 ---~----~~~~~----~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~ 298 (1205)
. ..... ..+....+.+.+. .++|+||||||||+.+.|+.+ .+||+||||||++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------------NLSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------------HSSCCEEEECSCS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------------CCCeEEEEeccCh
Confidence 1 10001 1233445555552 369999999999998888765 2589999999999
Q ss_pred hHHhhcCCCCceEEcc------CCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCC--CchH
Q 000975 299 HVLRINMSNPRIFSIS------TLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQ--STHV 370 (1205)
Q Consensus 299 ~v~~~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~--~~~~ 370 (1205)
.++.. +.....|+++ +|+++|||+||.+..+.. .+++..+| |+|+||||+++|+.|+.+ +..+
T Consensus 276 ~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 98852 3333356666 999999999999997542 22334444 999999999999999988 5667
Q ss_pred HHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHH-HHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhHHHHH
Q 000975 371 WKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEA-QFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVAR 449 (1205)
Q Consensus 371 w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 449 (1205)
|+.. .......++.+||+.||+++ |+||+|||+||+++.|+.+.++.+|+++| .++
T Consensus 347 W~~~-------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--------eed-- 403 (1221)
T 1vt4_I 347 WKHV-------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KSD-- 403 (1221)
T ss_dssp HHHC-------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--------SHH--
T ss_pred HhcC-------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--------HHH--
Confidence 7642 11234889999999999999 99999999999999999999999999887 122
Q ss_pred HHHHHHHHhhccccccccCCCCCcEEEehHHHHHH
Q 000975 450 NRVYTLMDHLKGPCLLLNGDTEDHVKMHQIIHALA 484 (1205)
Q Consensus 450 ~~~~~~~~~L~~~~l~~~~~~~~~~~mHdlv~~~~ 484 (1205)
..+++++|+++||++..+...+|+|||++++++
T Consensus 404 --Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 --VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp --HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred --HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 345688999999998865567899999999955
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-35 Score=397.29 Aligned_cols=315 Identities=19% Similarity=0.281 Sum_probs=250.0
Q ss_pred ccCCccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh-cC-CCcEEEEEEecCCCC--HHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK-ED-LFDVVVDAEVTHTPD--WKEI 220 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~ 220 (1205)
.|+....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. +|+.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45566779999999999999995 456789999999999999999999988643 23 557889999998643 4445
Q ss_pred HHHHHHHhCCCCCC----CCCHHHHHHHHHHHHHc-CCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEec
Q 000975 221 CGRIADQLGLEIVR----PDSLVEKANQLRQALKK-KKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 221 ~~~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
+..++..++..... .....+....++..+.. ++|+||||||||+...|+.+ .+||+|||||
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvTt 264 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEEE
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------------cCCCEEEEEc
Confidence 66777777654321 22455556666666652 24999999999998877764 4688999999
Q ss_pred CchhHHhhcCCCCceEEccC-CChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHHHH
Q 000975 296 RDQHVLRINMSNPRIFSIST-LADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDA 374 (1205)
Q Consensus 296 r~~~v~~~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~ 374 (1205)
|++.++....+....+++++ |+++||++||...++.. .+..++++++|+++|+|+||||+++|++|+.++ ..|+++
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH
Confidence 99999853466678899996 99999999999998542 345567799999999999999999999998876 579999
Q ss_pred HHHHHhcCCCcccc-----cccchhhHHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhHHHHH
Q 000975 375 INWLRKSNPRKIKG-----MDADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVAR 449 (1205)
Q Consensus 375 l~~l~~~~~~~~~~-----~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 449 (1205)
++.+.......+.. .+....++.+||+.||+++|+||+|||+||+++.|+.+.++.+|.+++ +
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~---------~--- 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET---------E--- 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH---------H---
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH---------H---
Confidence 99997655322221 122388999999999999999999999999999999999999997665 2
Q ss_pred HHHHHHHHhhccccccccCCCC--CcEEEehHHHHHHHHHhccc
Q 000975 450 NRVYTLMDHLKGPCLLLNGDTE--DHVKMHQIIHALAVLIASDK 491 (1205)
Q Consensus 450 ~~~~~~~~~L~~~~l~~~~~~~--~~~~mHdlv~~~~~~~~~~~ 491 (1205)
...+++++|++++|++..... .+|+|||+||++++.++.++
T Consensus 410 -~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 -EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 334568888899999865322 25999999999999987754
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-34 Score=355.23 Aligned_cols=526 Identities=16% Similarity=0.131 Sum_probs=272.6
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.+++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 456666677777776443 66777777777776 44554557777777777777777766 4557777777777777777
Q ss_pred CCC--CccccccccCcEEEcccCCCCccc-hhccCCCccCEEeccCCCCCCc--cChhhhcCCCCCCEEEccCCcCcccc
Q 000975 594 LED--VARVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 594 l~~--~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
+.. |..|+++++|++|++++|.++.+| ..++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..++
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 666 566777777777777777777665 557777777777777755 443 4443 777777777777777655433
Q ss_pred CCCccchHhhccCCC-CcEEEEecc------hhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccc--
Q 000975 669 GQSNASVVELKQLSS-LTILDMHIP------DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYL-- 739 (1205)
Q Consensus 669 ~~~~~~l~~L~~L~~-L~~L~l~~~------~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~-- 739 (1205)
...+..+.+++. +..|+++.. .......+|+.+++++|.+.....+.+......++.+.+........
T Consensus 170 ---~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 170 ---VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp ---TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ---hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 222334444443 345554411 11111113344444444321111111112222222222221110000
Q ss_pred -hhhHHHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCccccccccccccccccccee
Q 000975 740 -GYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVC 818 (1205)
Q Consensus 740 -~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 818 (1205)
.......+..+.. + .++.+.+..+..+..... ....+++|+.|.+.++. +..++
T Consensus 247 l~~~~~~~~~~l~~---------------------l-~l~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~l~ 301 (606)
T 3vq2_A 247 LEIFEPSIMEGLCD---------------------V-TIDEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGVS-IKYLE 301 (606)
T ss_dssp CSCCCGGGGTTGGG---------------------S-EEEEEEECCCTTCCGGGG--SCGGGTTCSEEEEESCC-CCCCC
T ss_pred ccccChHHhhhhhh---------------------c-cHhheecccccccccccc--ccccCCCCCEEEecCcc-chhhh
Confidence 0000000011111 1 233333322222221111 12334444444444422 11111
Q ss_pred ccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccc
Q 000975 819 GSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLH 898 (1205)
Q Consensus 819 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 898 (1205)
....+++|++|++++|. +..+|. + .+++|++|++++|..+..+. +..+++|+
T Consensus 302 --------~l~~~~~L~~L~l~~n~-l~~lp~---~-~l~~L~~L~l~~n~~~~~~~---------------~~~l~~L~ 353 (606)
T 3vq2_A 302 --------DVPKHFKWQSLSIIRCQ-LKQFPT---L-DLPFLKSLTLTMNKGSISFK---------------KVALPSLS 353 (606)
T ss_dssp --------CCCTTCCCSEEEEESCC-CSSCCC---C-CCSSCCEEEEESCSSCEECC---------------CCCCTTCC
T ss_pred --------hccccccCCEEEccccc-Cccccc---C-CCCccceeeccCCcCccchh---------------hccCCCCC
Confidence 11446667777777774 355653 2 66777777777764433221 14566666
Q ss_pred hhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccE
Q 000975 899 SLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTE 978 (1205)
Q Consensus 899 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~ 978 (1205)
.|+++++. ++.+.. .......+++|++|++++|.++.++ ..+. .+++|+.
T Consensus 354 ~L~ls~n~-l~~~~~------------------------~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~----~l~~L~~ 403 (606)
T 3vq2_A 354 YLDLSRNA-LSFSGC------------------------CSYSDLGTNSLRHLDLSFNGAIIMS-ANFM----GLEELQH 403 (606)
T ss_dssp EEECCSSC-EEEEEE------------------------CCHHHHCCSCCCEEECCSCSEEEEC-CCCT----TCTTCCE
T ss_pred EEECcCCc-cCCCcc------------------------hhhhhccCCcccEeECCCCccccch-hhcc----CCCCCCe
Confidence 66666543 222100 0011234667777777777666654 2222 5677777
Q ss_pred EEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCC
Q 000975 979 LTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELP 1058 (1205)
Q Consensus 979 L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~ 1058 (1205)
|++++| ++...++...+..+++|+.|++++|......+. ....+++|+.|++++|.--.......+..++
T Consensus 404 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 404 LDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG---------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp EECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTT---------TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred eECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchh---------hhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 777763 555554434456667777777766553221111 1234667777777775322222334566677
Q ss_pred CcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEec
Q 000975 1059 SLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVE 1138 (1205)
Q Consensus 1059 ~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~ 1138 (1205)
+|+.|++++| +++.++ +..+..+++|++|++++|. +..+.... .+.+++|+.|+++
T Consensus 474 ~L~~L~Ls~n-~l~~~~--------------------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 474 NLTFLDLSKC-QLEQIS--------------------WGVFDTLHRLQLLNMSHNN-LLFLDSSH--YNQLYSLSTLDCS 529 (606)
T ss_dssp TCCEEECTTS-CCCEEC--------------------TTTTTTCTTCCEEECCSSC-CSCEEGGG--TTTCTTCCEEECT
T ss_pred CCCEEECCCC-cCCccC--------------------hhhhcccccCCEEECCCCc-CCCcCHHH--ccCCCcCCEEECC
Confidence 7777777765 333332 1223446677777777763 33332211 1345677777777
Q ss_pred ccccccccccchhHhhcc-CCcEEEEecCC
Q 000975 1139 YCDELLNIFPSSMMRSLK-KLEHLSVIECE 1167 (1205)
Q Consensus 1139 ~c~~L~~~lp~~~l~~l~-sL~~L~i~~C~ 1167 (1205)
+|. ++. +|.+ +..++ +|+.|+++++|
T Consensus 530 ~N~-l~~-~p~~-~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 530 FNR-IET-SKGI-LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TSC-CCC-EESC-GGGSCTTCCEEECCSCC
T ss_pred CCc-Ccc-cCHh-HhhhcccCcEEEccCCC
Confidence 754 555 5655 45554 47777776643
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-33 Score=345.19 Aligned_cols=522 Identities=17% Similarity=0.157 Sum_probs=289.8
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++..+..+..+|..+. +++++|++++|.+. .+++..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 345555566666665442 35677777777665 34444456677777777777766654 5556777777777777776
Q ss_pred CCC--CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 594 LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 594 l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
+.. |..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 170 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSK- 170 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECH-
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccCh-
Confidence 655 45666777777777777766665 4556677777777777654 444432224456677777776665554332
Q ss_pred CccchHhhccCCCCc--EEEEecc------hhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhh
Q 000975 671 SNASVVELKQLSSLT--ILDMHIP------DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYG 742 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~--~L~l~~~------~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~ 742 (1205)
..+..+++|+ .|+++.. ........|+.++++++. ..+..
T Consensus 171 -----~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---------------------------~~~~~ 218 (606)
T 3t6q_A 171 -----EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---------------------------NLLVI 218 (606)
T ss_dssp -----HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---------------------------CHHHH
T ss_pred -----hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---------------------------hHHHH
Confidence 3455555555 3333211 001111122222322221 00000
Q ss_pred HHHHhhh--hchhhcccccCch--hh-hhhhccCCCc--cccceEEeecCCceeEeecCCCCCccccccccccccccccc
Q 000975 743 IKKLLKT--TEDLYLDNLNGIQ--NI-VQELDNGEGF--PRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLE 815 (1205)
Q Consensus 743 ~~~~l~~--L~~L~l~~~~~~~--~~-~~~l~~~~~l--~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 815 (1205)
+ ..+.+ +..+.+....... .+ ...+ ..+ .+|+.|++++|. +..++.. ....+++|+.|++.++ .+.
T Consensus 219 ~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~---~~l~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~ 291 (606)
T 3t6q_A 219 F-KGLKNSTIQSLWLGTFEDMDDEDISPAVF---EGLCEMSVESINLQKHY-FFNISSN-TFHCFSGLQELDLTAT-HLS 291 (606)
T ss_dssp H-HHTTTCEEEEEECCCCTTSCCCCCCGGGG---GGGGGSEEEEEECTTCC-CSSCCTT-TTTTCTTCSEEECTTS-CCS
T ss_pred h-hhccccchhheechhhccccccccChhHh---chhhcCceeEEEeecCc-cCccCHH-HhccccCCCEEeccCC-ccC
Confidence 0 00011 0111111111000 00 0011 111 156677776663 3332211 2344566666666664 233
Q ss_pred ceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeecc
Q 000975 816 KVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFN 895 (1205)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 895 (1205)
.++. ....+++|++|++++| .++.+++. .+..+++|++|++++|.....++.. .+..++
T Consensus 292 ~lp~-------~l~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~------------~~~~l~ 350 (606)
T 3t6q_A 292 ELPS-------GLVGLSTLKKLVLSAN-KFENLCQI-SASNFPSLTHLSIKGNTKRLELGTG------------CLENLE 350 (606)
T ss_dssp CCCS-------SCCSCTTCCEEECTTC-CCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSS------------TTTTCT
T ss_pred CCCh-------hhcccccCCEEECccC-CcCcCchh-hhhccCcCCEEECCCCCcccccchh------------hhhccC
Confidence 3221 1145777888888877 45555332 3467788888888877543333211 124567
Q ss_pred ccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCC
Q 000975 896 HLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQ 975 (1205)
Q Consensus 896 ~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~ 975 (1205)
+|+.|+++++. +..+.. .......+++|++|++++|.++++.+..+. .+++
T Consensus 351 ~L~~L~l~~n~-l~~~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~ 401 (606)
T 3t6q_A 351 NLRELDLSHDD-IETSDC------------------------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFK----ECPQ 401 (606)
T ss_dssp TCCEEECCSSC-CCEEEE------------------------STTTTTTCTTCCEEECCSCSCEEECTTTTT----TCTT
T ss_pred cCCEEECCCCc-cccccC------------------------cchhcccCCCCCEEECCCCcCCcCCHHHhc----CCcc
Confidence 77777777653 222110 001123477888888888888777666654 6788
Q ss_pred ccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccc--cC-CC
Q 000975 976 LTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSR--FG-IG 1052 (1205)
Q Consensus 976 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~~-~~ 1052 (1205)
|++|++++| .++...+...+..+++|++|++++|. +..... .....+++|+.|++++|. +.. ++ ..
T Consensus 402 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 470 (606)
T 3t6q_A 402 LELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE--------QLFDGLPALQHLNLQGNH-FPKGNIQKTN 470 (606)
T ss_dssp CSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT--------TTTTTCTTCCEEECTTCB-CGGGEECSSC
T ss_pred CCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCH--------HHHhCCCCCCEEECCCCC-CCccccccch
Confidence 888888884 56555444456778888888887764 332211 112347888888888854 333 11 23
Q ss_pred cccCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCc
Q 000975 1053 NLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKL 1132 (1205)
Q Consensus 1053 ~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL 1132 (1205)
.+..+++|+.|++++|. ++.++ +..+..+++|++|++++|. ++.+.... ...+++|
T Consensus 471 ~~~~l~~L~~L~Ls~n~-l~~~~--------------------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--l~~l~~L 526 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCD-LSSID--------------------QHAFTSLKMMNHVDLSHNR-LTSSSIEA--LSHLKGI 526 (606)
T ss_dssp GGGGCTTCCEEECTTSC-CCEEC--------------------TTTTTTCTTCCEEECCSSC-CCGGGGGG--GTTCCSC
T ss_pred hhccCCCccEEECCCCc-cCccC--------------------hhhhccccCCCEEECCCCc-cCcCChhH--hCccccc
Confidence 46778888888888863 44433 1234557888888888884 44333222 2456788
Q ss_pred cEEEecccccccccccchhHhhccCCcEEEEecCC
Q 000975 1133 KVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECE 1167 (1205)
Q Consensus 1133 ~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~ 1167 (1205)
.|++++|. ++. +|...++.+++|+.|++++||
T Consensus 527 -~L~L~~N~-l~~-~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 527 -YLNLASNH-ISI-ILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -EEECCSSC-CCC-CCGGGHHHHHTSSEEECTTCC
T ss_pred -EEECcCCc-ccc-cCHhhcccCCCCCEEeCCCCC
Confidence 88888864 565 344457788888888888765
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.2e-33 Score=346.84 Aligned_cols=564 Identities=19% Similarity=0.204 Sum_probs=391.7
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.+++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467888889999997654 79999999999988 57777789999999999999999977 6679999999999999999
Q ss_pred CCC-C-ccccccccCcEEEcccCCCCccc-hhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 594 LED-V-ARVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 594 l~~-~-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
++. | ..|+++++|++|++++|.++.+| ..++++++|++|++++|. +...++..++++++|++|++++|.+..++.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKS- 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCH-
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCH-
Confidence 988 4 46999999999999999999886 579999999999999976 677666668999999999999997765432
Q ss_pred CccchHhh--ccCCCCcEEEEecc-------hhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchh
Q 000975 671 SNASVVEL--KQLSSLTILDMHIP-------DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGY 741 (1205)
Q Consensus 671 ~~~~l~~L--~~L~~L~~L~l~~~-------~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 741 (1205)
..+ ..+++|+.|+++.. ..+..+..|..+++.++.+ .+.
T Consensus 163 -----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l---------------------------~~~ 210 (680)
T 1ziw_A 163 -----EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL---------------------------GPS 210 (680)
T ss_dssp -----HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC---------------------------HHH
T ss_pred -----HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc---------------------------Chh
Confidence 222 24567777776521 1112222333333332221 011
Q ss_pred hHHH-----HhhhhchhhcccccCchhhhhhhccCCCcc--ccceEEeecCCceeEeecCCCCCcccccccccccccccc
Q 000975 742 GIKK-----LLKTTEDLYLDNLNGIQNIVQELDNGEGFP--RLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILL 814 (1205)
Q Consensus 742 ~~~~-----~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 814 (1205)
.... ..++|+.|++.++.........+ ..++ +|++|++++|. +..++.. ....+++|+.|++.++ .+
T Consensus 211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~---~~l~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l 284 (680)
T 1ziw_A 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTF---LGLKWTNLTMLDLSYNN-LNVVGND-SFAWLPQLEYFFLEYN-NI 284 (680)
T ss_dssp HHHHHHHHHTTSCCCEEECTTSCCCEECTTTT---GGGGGSCCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSC-CB
T ss_pred hHHHHHHHhhhccccEEEccCCcccccChhHh---hccCcCCCCEEECCCCC-cCccCcc-cccCcccccEeeCCCC-cc
Confidence 1111 12577888888765443333333 3443 49999998884 4443321 3455788888888774 23
Q ss_pred cceeccccccccccccCCCcCeeeeecCCCcc-----cccc--hHHHHHcccCcEEEeccccchhhhhcccCCCCcccCC
Q 000975 815 EKVCGSQVQLTEDNRSFTNLRIINIEQCHRLK-----HLFP--SFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENG 887 (1205)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 887 (1205)
.......+ ..+++|+.|++.++..-. .+|. ...+..+++|++|++++|... .++..
T Consensus 285 ~~~~~~~~------~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~---------- 347 (680)
T 1ziw_A 285 QHLFSHSL------HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSN---------- 347 (680)
T ss_dssp SEECTTTT------TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTT----------
T ss_pred CccChhhh------cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC-CCChh----------
Confidence 33322222 567888999888653111 1111 112467888999999886432 22211
Q ss_pred ccceeeccccchhhccCCC-cccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCC
Q 000975 888 SMRVVNFNHLHSLALRRLP-QLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQF 966 (1205)
Q Consensus 888 ~~~~~~~~~L~~L~l~~~~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 966 (1205)
.+..+++|+.|+++++. .+..++.. . ......++|+.|++++|+++.+.+..+
T Consensus 348 --~~~~l~~L~~L~Ls~n~~~~~~l~~~-----------------------~-f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 348 --MFTGLINLKYLSLSNSFTSLRTLTNE-----------------------T-FVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp --TTTTCTTCCEEECTTCBSCCCEECTT-----------------------T-TGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred --HhccccCCcEEECCCCchhhhhcchh-----------------------h-hcccccCcCceEECCCCCCCeEChhhh
Confidence 12457788888887764 22222210 0 000123689999999999998877766
Q ss_pred CCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCC-
Q 000975 967 PATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQ- 1045 (1205)
Q Consensus 967 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~- 1045 (1205)
. .+++|+.|++++| .+....+...+..+++|++|++++|. +..+.. .....+++|+.|+++++.-
T Consensus 402 ~----~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 402 S----WLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTR--------NSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp T----TCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCT--------TTTTTCTTCCEEECTTSCCB
T ss_pred h----CCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeCh--------hhhhcCcccccchhcccccc
Confidence 5 7899999999995 55432233457889999999999876 433322 1123589999999998642
Q ss_pred -ccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCC
Q 000975 1046 -LSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQL 1124 (1205)
Q Consensus 1046 -L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 1124 (1205)
+... +..+..+++|+.|++++| +++.+++ ..+..+++|+.|++++| .++.++...+
T Consensus 468 ~~~~~-p~~~~~l~~L~~L~Ls~N-~l~~i~~--------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 524 (680)
T 1ziw_A 468 NVDSS-PSPFQPLRNLTILDLSNN-NIANIND--------------------DMLEGLEKLEILDLQHN-NLARLWKHAN 524 (680)
T ss_dssp CTTCS-SCTTTTCTTCCEEECCSS-CCCCCCT--------------------TTTTTCTTCCEEECCSS-CCGGGGSTTS
T ss_pred ccccC-CcccccCCCCCEEECCCC-CCCcCCh--------------------hhhccccccCEEeCCCC-Cccccchhhc
Confidence 2222 346788999999999984 4665551 23456799999999998 4666654322
Q ss_pred C------CCcccCccEEEecccccccccccchhHhhccCCcEEEEecCCCceeeeeccCcccccccccEEEecc------
Q 000975 1125 A------SGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECESLKEITEKADHRKAFSQSISLKLVK------ 1192 (1205)
Q Consensus 1125 ~------~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~~l~~~~~~~~~~~~~~~L~~l~i~~------ 1192 (1205)
+ ...+++|+.|++++| +++. +|...++++++|+.|++++ +.++.+|...- ..+++|+.|++++
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N-~l~~-i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESN-GFDE-IPVEVFKDLFELKIIDLGL-NNLNTLPASVF--NNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCS-SCCCCCCTTTT--TTCTTCCEEECTTSCCCBC
T ss_pred cCCcchhhcCCCCCCEEECCCC-CCCC-CCHHHcccccCcceeECCC-CCCCcCCHhHh--CCCCCCCEEECCCCcCCcc
Confidence 1 356899999999996 5776 6776689999999999977 57888876531 3578999999875
Q ss_pred --------CCCCcccCCCCCC
Q 000975 1193 --------LPKLENSDLGAHP 1205 (1205)
Q Consensus 1193 --------~p~L~~l~~~~~~ 1205 (1205)
+++|+.+++++||
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCC
T ss_pred ChhHhcccccccCEEEccCCC
Confidence 5788999999987
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-33 Score=346.98 Aligned_cols=517 Identities=16% Similarity=0.151 Sum_probs=361.3
Q ss_pred ceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcc
Q 000975 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (1205)
Q Consensus 536 Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~ 612 (1205)
.++++.+++.+. .+|..+ .++|++|++++|.++.++. .|.++++|++|++++|.++. |..|+++++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcc-cCCCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 356788888776 788765 4889999999999998865 79999999999999999988 5789999999999999
Q ss_pred cCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcc--ccCCCccchHhhccCCCCcEEEE
Q 000975 613 NSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK--VEGQSNASVVELKQLSSLTILDM 689 (1205)
Q Consensus 613 ~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~~L~~L~l 689 (1205)
+|.++.+ |..++++++|++|++++|. +..+++..++++++|++|++++|.+.. ++ ..+.++++|+.|++
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-------~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLP-------AYFSNLTNLVHVDL 160 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-------GGGGTCTTCCEEEC
T ss_pred CCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceech-------HhHhhcCCCCEEEc
Confidence 9999988 7889999999999999976 777876669999999999999998764 33 56888999999998
Q ss_pred ecc-------hhhhccccc----cccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccc
Q 000975 690 HIP-------DAQLLLEDL----ISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNL 758 (1205)
Q Consensus 690 ~~~-------~~~~~~~~L----~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 758 (1205)
+.. ..+..+.+| ..+++++|.+.. .+...... .+|+.|++.++
T Consensus 161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-------------------------~~~~~~~~-~~L~~L~L~~n 214 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-------------------------IQDQAFQG-IKLHELTLRGN 214 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-------------------------ECTTTTTT-CEEEEEEEESC
T ss_pred cCCcceecChhhhhhhhccccccceeeccCCCcce-------------------------eCcccccC-ceeeeeeccCC
Confidence 732 122223333 256666665421 11111111 25566666655
Q ss_pred cCch-hhhhhhccCCCccccceEEeecCC--ceeEeecCCCCCccccccccc-----ccccccccceecccccccccccc
Q 000975 759 NGIQ-NIVQELDNGEGFPRLKHLHVQNDP--KILCIANSEGPVIFPLLQSLF-----LCNLILLEKVCGSQVQLTEDNRS 830 (1205)
Q Consensus 759 ~~~~-~~~~~l~~~~~l~~L~~L~L~~~~--~l~~~~~~~~~~~~~~L~~L~-----l~~~~~l~~~~~~~~~~~~~~~~ 830 (1205)
.... .....+ +.+++|+.+.+.... ....+. ......+..+..+. +.....+...... ...
T Consensus 215 ~~~~~~~~~~~---~~l~~L~~l~l~~~~~~~~~~l~-~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-------~~~ 283 (606)
T 3vq2_A 215 FNSSNIMKTCL---QNLAGLHVHRLILGEFKDERNLE-IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-------FHC 283 (606)
T ss_dssp CSCHHHHHHHH---HTTTTCEEEEEEEECCTTSCCCS-CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-------CGG
T ss_pred ccchhHHHHHh---ccccccccccccccccccCCccc-ccChHHhhhhhhccHhheeccccccccccccc-------ccc
Confidence 4332 222333 556666666654221 111110 01122233333333 3222222222111 267
Q ss_pred CCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccc
Q 000975 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTS 910 (1205)
Q Consensus 831 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 910 (1205)
+++|+.|++.++ .+..++ .+..+++|++|++++|.. ..++. ..+++|+.|+++++..+..
T Consensus 284 l~~L~~L~l~~~-~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~---------------~~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 284 LANVSAMSLAGV-SIKYLE---DVPKHFKWQSLSIIRCQL-KQFPT---------------LDLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp GTTCSEEEEESC-CCCCCC---CCCTTCCCSEEEEESCCC-SSCCC---------------CCCSSCCEEEEESCSSCEE
T ss_pred CCCCCEEEecCc-cchhhh---hccccccCCEEEcccccC-ccccc---------------CCCCccceeeccCCcCccc
Confidence 899999999998 466666 256789999999999865 54441 1578999999988865544
Q ss_pred cCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccC--CCCCCCccccCCCccEEEecccCCcc
Q 000975 911 SGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIW--PNQFPATSYSSQQLTELTVDKCGCLK 988 (1205)
Q Consensus 911 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~~~~l~~L~~L~l~~C~~L~ 988 (1205)
++. ..+++|++|++++|.++.+. +..+ ..+++|++|++++| .++
T Consensus 344 ~~~-----------------------------~~l~~L~~L~ls~n~l~~~~~~~~~~----~~~~~L~~L~L~~n-~l~ 389 (606)
T 3vq2_A 344 FKK-----------------------------VALPSLSYLDLSRNALSFSGCCSYSD----LGTNSLRHLDLSFN-GAI 389 (606)
T ss_dssp CCC-----------------------------CCCTTCCEEECCSSCEEEEEECCHHH----HCCSCCCEEECCSC-SEE
T ss_pred hhh-----------------------------ccCCCCCEEECcCCccCCCcchhhhh----ccCCcccEeECCCC-ccc
Confidence 322 35899999999999887763 2222 26899999999995 677
Q ss_pred cccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccC
Q 000975 989 FLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFC 1068 (1205)
Q Consensus 989 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C 1068 (1205)
.++ ..+..+++|+.|++++|.- ..+.. . .....+++|+.|++++|. +.......+..+++|++|++++|
T Consensus 390 ~~~--~~~~~l~~L~~L~l~~n~l-~~~~~-----~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 390 IMS--ANFMGLEELQHLDFQHSTL-KRVTE-----F--SAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEC--CCCTTCTTCCEEECTTSEE-ESTTT-----T--TTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTC
T ss_pred cch--hhccCCCCCCeeECCCCcc-CCccC-----h--hhhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCC
Confidence 775 4577899999999988753 32211 0 113458999999999965 55555567889999999999997
Q ss_pred cccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEeccccccccccc
Q 000975 1069 PELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFP 1148 (1205)
Q Consensus 1069 ~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp 1148 (1205)
.--..+. +..+..+++|++|++++| .++.++... .+.+++|+.|++++| ++....|
T Consensus 459 ~l~~~~~--------------------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~ 514 (606)
T 3vq2_A 459 SFKDNTL--------------------SNVFANTTNLTFLDLSKC-QLEQISWGV--FDTLHRLQLLNMSHN-NLLFLDS 514 (606)
T ss_dssp EEGGGEE--------------------CSCCTTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCSCEEG
T ss_pred cCCCcch--------------------HHhhccCCCCCEEECCCC-cCCccChhh--hcccccCCEEECCCC-cCCCcCH
Confidence 5332221 234567899999999999 454443332 256899999999997 4666456
Q ss_pred chhHhhccCCcEEEEecCCCceeeeeccCcccccc-cccEEEeccCCC
Q 000975 1149 SSMMRSLKKLEHLSVIECESLKEITEKADHRKAFS-QSISLKLVKLPK 1195 (1205)
Q Consensus 1149 ~~~l~~l~sL~~L~i~~C~~l~~~~~~~~~~~~~~-~L~~l~i~~~p~ 1195 (1205)
.. ++.+++|++|++++| .++++|... ..++ +|+.+++.+.|-
T Consensus 515 ~~-~~~l~~L~~L~l~~N-~l~~~p~~~---~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 515 SH-YNQLYSLSTLDCSFN-RIETSKGIL---QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp GG-TTTCTTCCEEECTTS-CCCCEESCG---GGSCTTCCEEECCSCCC
T ss_pred HH-ccCCCcCCEEECCCC-cCcccCHhH---hhhcccCcEEEccCCCc
Confidence 54 789999999999997 488888763 3444 588888877653
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.6e-33 Score=342.37 Aligned_cols=524 Identities=17% Similarity=0.151 Sum_probs=358.9
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~ 613 (1205)
++++..+..+. .+|..+ ...+++|++++|.++.+ |..|+++++|++|+|++|.+.. |..|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 45666666665 788765 45799999999999988 6679999999999999999887 68899999999999999
Q ss_pred CCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEec-
Q 000975 614 SHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI- 691 (1205)
Q Consensus 614 ~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~- 691 (1205)
|.++.+ |..++++++|++|++++|. +..+++..++++++|++|++++|.+..++. ..+..+++|+.|+++.
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSS
T ss_pred CcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccC
Confidence 999976 7789999999999999976 788766669999999999999998775432 2344488899888862
Q ss_pred ------chhhhcccccc--ccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchh
Q 000975 692 ------PDAQLLLEDLI--SLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQN 763 (1205)
Q Consensus 692 ------~~~~~~~~~L~--~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 763 (1205)
+..+..+++|+ .+++++|.+... +..... ..+|+.|++.++.....
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~-------------------------~~~~~~-~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGI-------------------------EPGAFD-SAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEE-------------------------CTTTTT-TCEEEEEECTTCSCHHH
T ss_pred cccccChhhhhhhcccceeEEecCCCccCcc-------------------------ChhHhh-hccccccccCCchhHHH
Confidence 22234445555 555666554211 111111 14567777777654433
Q ss_pred hhhhhccCCCccccceEEeecCCceeEeecCCCCCccc-----ccccccccccccccceeccccccccccccCCCcCeee
Q 000975 764 IVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFP-----LLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIIN 838 (1205)
Q Consensus 764 ~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 838 (1205)
....+ .. ..+..+.+..+...... ......|. +|+.|++.++ .+..+....+ +.+++|++|+
T Consensus 218 ~~~~l---~~-~~l~~l~~~~~~~~~~~--~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~------~~l~~L~~L~ 284 (606)
T 3t6q_A 218 IFKGL---KN-STIQSLWLGTFEDMDDE--DISPAVFEGLCEMSVESINLQKH-YFFNISSNTF------HCFSGLQELD 284 (606)
T ss_dssp HHHHT---TT-CEEEEEECCCCTTSCCC--CCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTT------TTCTTCSEEE
T ss_pred Hhhhc---cc-cchhheechhhcccccc--ccChhHhchhhcCceeEEEeecC-ccCccCHHHh------ccccCCCEEe
Confidence 33322 11 23344444433322211 01111222 5777777764 3333332222 5689999999
Q ss_pred eecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCC
Q 000975 839 IEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETP 918 (1205)
Q Consensus 839 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~ 918 (1205)
+++| .++.+|. .+..+++|++|++++|... .+++ ..+..+++|+.|+++++.....++.
T Consensus 285 l~~n-~l~~lp~--~l~~l~~L~~L~l~~n~l~-~~~~------------~~~~~l~~L~~L~l~~n~~~~~~~~----- 343 (606)
T 3t6q_A 285 LTAT-HLSELPS--GLVGLSTLKKLVLSANKFE-NLCQ------------ISASNFPSLTHLSIKGNTKRLELGT----- 343 (606)
T ss_dssp CTTS-CCSCCCS--SCCSCTTCCEEECTTCCCS-BGGG------------GCGGGCTTCSEEECCSCSSCCBCCS-----
T ss_pred ccCC-ccCCCCh--hhcccccCCEEECccCCcC-cCch------------hhhhccCcCCEEECCCCCcccccch-----
Confidence 9998 5777776 3577899999999997533 3221 1225688999999988754333322
Q ss_pred CCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccC--CCCCCCccccCCCccEEEecccCCcccccchhhH
Q 000975 919 TTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIW--PNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMV 996 (1205)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~ 996 (1205)
.....+++|++|++++|.++.+. +..+. .+++|++|++++| .+..+++ ..+
T Consensus 344 ---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~-~~~ 396 (606)
T 3t6q_A 344 ---------------------GCLENLENLRELDLSHDDIETSDCCNLQLR----NLSHLQSLNLSYN-EPLSLKT-EAF 396 (606)
T ss_dssp ---------------------STTTTCTTCCEEECCSSCCCEEEESTTTTT----TCTTCCEEECCSC-SCEEECT-TTT
T ss_pred ---------------------hhhhccCcCCEEECCCCccccccCcchhcc----cCCCCCEEECCCC-cCCcCCH-HHh
Confidence 11245899999999999888775 33443 7899999999995 6766644 457
Q ss_pred HhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccc
Q 000975 997 NSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFIC 1076 (1205)
Q Consensus 997 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~ 1076 (1205)
..+++|++|++++|.. ..... ......+++|+.|++++| .++......+..+++|++|++++|+- +....
T Consensus 397 ~~l~~L~~L~l~~n~l-~~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~ 466 (606)
T 3t6q_A 397 KECPQLELLDLAFTRL-KVKDA-------QSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHF-PKGNI 466 (606)
T ss_dssp TTCTTCSEEECTTCCE-ECCTT-------CCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBC-GGGEE
T ss_pred cCCccCCeEECCCCcC-CCccc-------chhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCC-Ccccc
Confidence 7889999999988753 32211 011345899999999996 46666666788899999999999753 32110
Q ss_pred cccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccchhHhhcc
Q 000975 1077 AHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLK 1156 (1205)
Q Consensus 1077 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~ 1156 (1205)
. .+..+..+++|+.|++++| .++.++... .+.+++|+.|++++|. +....|. .+.+++
T Consensus 467 ~-----------------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~l~~l~ 524 (606)
T 3t6q_A 467 Q-----------------KTNSLQTLGRLEILVLSFC-DLSSIDQHA--FTSLKMMNHVDLSHNR-LTSSSIE-ALSHLK 524 (606)
T ss_dssp C-----------------SSCGGGGCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSSC-CCGGGGG-GGTTCC
T ss_pred c-----------------cchhhccCCCccEEECCCC-ccCccChhh--hccccCCCEEECCCCc-cCcCChh-HhCccc
Confidence 0 0123566899999999999 455443332 3568999999999974 6664554 478899
Q ss_pred CCcEEEEecCCCceeeeeccCcccccccccEEEeccCC
Q 000975 1157 KLEHLSVIECESLKEITEKADHRKAFSQSISLKLVKLP 1194 (1205)
Q Consensus 1157 sL~~L~i~~C~~l~~~~~~~~~~~~~~~L~~l~i~~~p 1194 (1205)
+| .|++++| .+..+++.. -..+++|+.+++.++|
T Consensus 525 ~L-~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 525 GI-YLNLASN-HISIILPSL--LPILSQQRTINLRQNP 558 (606)
T ss_dssp SC-EEECCSS-CCCCCCGGG--HHHHHTSSEEECTTCC
T ss_pred cc-EEECcCC-cccccCHhh--cccCCCCCEEeCCCCC
Confidence 99 9999997 555554432 1346677777776665
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=337.31 Aligned_cols=309 Identities=20% Similarity=0.297 Sum_probs=235.3
Q ss_pred cCCccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh-cCCC-cEEEEEEecCCCCHHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK-EDLF-DVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~ 223 (1205)
|.....|+||+.++++|.+++. .++.++|+|+||||+||||||++++++.+. +.+| +.++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3445579999999999999997 345789999999999999999999987654 5678 58999999876 33333333
Q ss_pred ---HHHHhCCC----CCCCCCHHHHHHHHHHHHHcC-CeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEec
Q 000975 224 ---IADQLGLE----IVRPDSLVEKANQLRQALKKK-KRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 224 ---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
++..++.. .............+...+... +++||||||||+...++.+ .++++|||||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------------~~~~~ilvTs 264 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------------DSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------------CSSCEEEEEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------------cCCCeEEEEC
Confidence 34455531 112234556667777777643 7899999999987655533 4578999999
Q ss_pred CchhHHhhcCCCCceEEc---cCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHhcCCCchHHH
Q 000975 296 RDQHVLRINMSNPRIFSI---STLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWK 372 (1205)
Q Consensus 296 r~~~v~~~~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~ 372 (1205)
|++.++.. .. ...+++ ++|+++||++||.+.++.. .....+.+.+|+++|+|+||||.++|++++.+. ..|.
T Consensus 265 R~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~ 339 (591)
T 1z6t_A 265 RDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWE 339 (591)
T ss_dssp SCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHH
T ss_pred CCcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHH
Confidence 99998762 22 345555 5899999999999998642 223356789999999999999999999998763 4799
Q ss_pred HHHHHHHhcCCCcccc-----cccchhhHHhhhhcCcHHHHHHHHHhcccCCCCccCHHHHHHHHHHcccccccchhHHH
Q 000975 373 DAINWLRKSNPRKIKG-----MDADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEV 447 (1205)
Q Consensus 373 ~~l~~l~~~~~~~~~~-----~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~ 447 (1205)
.+++.+.......+.. ......++..||+.||++.|.||++||+||+++.|+.+.+...|.+++ ++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~---------~~ 410 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET---------EE 410 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH---------HH
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH---------HH
Confidence 9999887654221111 122378999999999999999999999999999999999999996554 22
Q ss_pred HHHHHHHHHHhhccccccccCC--CCCcEEEehHHHHHHHHHhc
Q 000975 448 ARNRVYTLMDHLKGPCLLLNGD--TEDHVKMHQIIHALAVLIAS 489 (1205)
Q Consensus 448 ~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~~~~~~~~~ 489 (1205)
+.+.+++|++++++.... ....|+||+++|++++....
T Consensus 411 ----~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 411 ----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ----HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ----HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 345688888899997532 33479999999999998843
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=341.76 Aligned_cols=523 Identities=17% Similarity=0.157 Sum_probs=315.6
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCC-CCc-ccccCCCcCCcEEEccCC
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHF-PSL-PLSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i-~~l-p~~i~~L~~Lr~L~L~~~ 592 (1205)
+.++.+++.+..+|. -.+++++|++++|.+. .++...|.++++|++|+|++|.. ..+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 345566677777777 5577888888888776 34334457888888888888743 355 666888888888888888
Q ss_pred cCCC--CccccccccCcEEEcccCCCCc-cchh--ccCCCccCEEeccCCCCCCcc-ChhhhcCCCCCCEEEccCCcCcc
Q 000975 593 HLED--VARVGDLAKLEILSFRNSHIEQ-LPEQ--IGNLTRLKLLDLSNCSKLKVI-KPEVISRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 593 ~l~~--~~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-~~~~l~~L~~L~~L~l~~~~~~~ 666 (1205)
.+.. |..|+++++|++|+|++|.++. +|.. +++|++|++|++++|. +..+ ++..++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8776 5778888888888888887774 4544 7788888888888865 4443 33457788888888888776653
Q ss_pred ccCCCccchHhhccCCCCcEEEEecchh-------hhccc------cccccccccceEEEccccccCCcc--CccceEEe
Q 000975 667 VEGQSNASVVELKQLSSLTILDMHIPDA-------QLLLE------DLISLDLERYRIFIGDVWNWSGKY--ECSRTLKL 731 (1205)
Q Consensus 667 ~~~~~~~~l~~L~~L~~L~~L~l~~~~~-------~~~~~------~L~~l~L~~~~i~~~~~~~~~~~~--~~l~~l~L 731 (1205)
... ..+..+.. ++|+.|+++.... ...+. .|+.+++++|.+.......+.... ..+..+.+
T Consensus 163 ~~~---~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 163 VCE---HELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCS---GGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred eCH---HHcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 321 22222221 5666666652211 11111 256666666643211100110000 11111211
Q ss_pred eccCcccchhhHHHHhhhhchhhcccccCchhh-hhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccc
Q 000975 732 KLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNI-VQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCN 810 (1205)
Q Consensus 732 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 810 (1205)
..+.... .+... ..... ...+ ..-..++|+.|++++|. +..+.. .....+++|+.|++.+
T Consensus 239 ~~~~~~~---------------~~~~~-~l~~~~~~~f-~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 239 AHHIMGA---------------GFGFH-NIKDPDQNTF-AGLARSSVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAY 299 (844)
T ss_dssp CSSCCBC---------------SSSCS-SSTTGGGTTT-TTTTTSCCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEES
T ss_pred ccccccc---------------ccccc-ccCCCChhhh-hccccCCccEEECCCCc-ccccCh-hhhhcCCCCCEEECCC
Confidence 1000000 00000 00010 1111 01124678888888874 333321 1334567788887776
Q ss_pred cccccceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccc
Q 000975 811 LILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMR 890 (1205)
Q Consensus 811 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 890 (1205)
+ .+..+....+ ..+++|++|++++| .++.+++. .+..+++|+.|++++|. +..++.. .
T Consensus 300 n-~i~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~~------------~ 357 (844)
T 3j0a_A 300 N-KINKIADEAF------YGLDNLQVLNLSYN-LLGELYSS-NFYGLPKVAYIDLQKNH-IAIIQDQ------------T 357 (844)
T ss_dssp C-CCCEECTTTT------TTCSSCCEEEEESC-CCSCCCSC-SCSSCTTCCEEECCSCC-CCCCCSS------------C
T ss_pred C-cCCCCChHHh------cCCCCCCEEECCCC-CCCccCHH-HhcCCCCCCEEECCCCC-CCccChh------------h
Confidence 3 3333322222 56788999999888 45555432 34678889999998863 4333321 1
Q ss_pred eeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCcc
Q 000975 891 VVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATS 970 (1205)
Q Consensus 891 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 970 (1205)
+..+++|+.|+++++. ++.++ .+++|+.|++++|+++.++.
T Consensus 358 ~~~l~~L~~L~Ls~N~-l~~i~-------------------------------~~~~L~~L~l~~N~l~~l~~------- 398 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNA-LTTIH-------------------------------FIPSIPDIFLSGNKLVTLPK------- 398 (844)
T ss_dssp SCSCCCCCEEEEETCC-SCCCS-------------------------------SCCSCSEEEEESCCCCCCCC-------
T ss_pred hcCCCCCCEEECCCCC-CCccc-------------------------------CCCCcchhccCCCCcccccc-------
Confidence 2557888888888753 33332 17788899999998886643
Q ss_pred ccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccc--
Q 000975 971 YSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSR-- 1048 (1205)
Q Consensus 971 ~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-- 1048 (1205)
...+++.|++++ ++++.++....+..+++|+.|++++|. ++.+.. ......+++|+.|+++++ .++.
T Consensus 399 -~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~~~~~L~~L~Ls~N-~l~~~~ 467 (844)
T 3j0a_A 399 -INLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQNR-FSSCSG-------DQTPSENPSLEQLFLGEN-MLQLAW 467 (844)
T ss_dssp -CCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCS-------SSSSCSCTTCCBCEEESC-CCSSSC
T ss_pred -cccccceeeccc-CccccCchhhhhhcCCccceeeCCCCc-cccccc-------ccccccCCccccccCCCC-cccccc
Confidence 235788889988 578777655556678899999998754 443321 011223788888888884 4432
Q ss_pred ---cCCCcccCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCC
Q 000975 1049 ---FGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLA 1125 (1205)
Q Consensus 1049 ---~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 1125 (1205)
.....+.++++|+.|++++| +++.+++ ..+..+++|+.|++++| .++.++...++
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--------------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 525 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHN-YLNSLPP--------------------GVFSHLTALRGLSLNSN-RLTVLSHNDLP 525 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHH-HHTTCCT--------------------TSSSSCCSCSEEEEESC-CCSSCCCCCCC
T ss_pred ccccchhhhcCcccccEEECCCC-cccccCh--------------------hHccchhhhheeECCCC-CCCccChhhhh
Confidence 22344677888889998884 5666552 22355788888888888 56666655532
Q ss_pred CCcccCccEEEecccccccccccchhHhhccCCcEEEEecCC
Q 000975 1126 SGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECE 1167 (1205)
Q Consensus 1126 ~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~ 1167 (1205)
++|+.|+++++ +++...|. .+++|+.|++.+.|
T Consensus 526 ----~~L~~L~Ls~N-~l~~~~~~----~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 526 ----ANLEILDISRN-QLLAPNPD----VFVSLSVLDITHNK 558 (844)
T ss_dssp ----SCCCEEEEEEE-CCCCCCSC----CCSSCCEEEEEEEC
T ss_pred ----ccccEEECCCC-cCCCCChh----HhCCcCEEEecCCC
Confidence 78888888884 46664443 35688888887643
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=324.42 Aligned_cols=499 Identities=17% Similarity=0.170 Sum_probs=260.0
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.++..+..+|..+ .++++.|++++|.+. .++...|.++++|++|++++|.++.++ ..|+++++|++|+|++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 34555555666666543 245777777777765 444445577777777777777777663 457777777777777777
Q ss_pred CCC--CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCc--cChhhhcCCCCCCEEEccCCcCcccc
Q 000975 594 LED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 594 l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
+.. +..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCEEC
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccceec
Confidence 666 3667777777777777777776654 47777777777777754 443 3433 777777777777777655433
Q ss_pred CCCccchHhhccCCCC-cEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHh
Q 000975 669 GQSNASVVELKQLSSL-TILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLL 747 (1205)
Q Consensus 669 ~~~~~~l~~L~~L~~L-~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l 747 (1205)
. ..+..+.+++.+ ..++++ +|.+.... +.. ...
T Consensus 166 ~---~~~~~l~~L~~~~~~L~l~-----------------~n~l~~~~-~~~---~~~---------------------- 199 (570)
T 2z63_A 166 C---TDLRVLHQMPLLNLSLDLS-----------------LNPMNFIQ-PGA---FKE---------------------- 199 (570)
T ss_dssp G---GGGHHHHTCTTCCCEEECT-----------------TCCCCEEC-TTT---TTT----------------------
T ss_pred H---HHccchhccchhhhhcccC-----------------CCCceecC-HHH---hcc----------------------
Confidence 1 122223333211 333333 22111000 000 000
Q ss_pred hhhchhhcccccC-chhhhhhhccCCCccccceEEeec--C---CceeEeecCCCCCccccccc-----ccccccccccc
Q 000975 748 KTTEDLYLDNLNG-IQNIVQELDNGEGFPRLKHLHVQN--D---PKILCIANSEGPVIFPLLQS-----LFLCNLILLEK 816 (1205)
Q Consensus 748 ~~L~~L~l~~~~~-~~~~~~~l~~~~~l~~L~~L~L~~--~---~~l~~~~~~~~~~~~~~L~~-----L~l~~~~~l~~ 816 (1205)
.+|++|++.++.. .......+ ..+++++.+.+.. . ..+..+ ....|..+.. +.+.++..+..
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~---~~l~~l~~~~l~~~~~~~~~~l~~~----~~~~~~~l~~l~l~~l~l~~~~~~~~ 272 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCI---QGLAGLEVHRLVLGEFRNEGNLEKF----DKSALEGLCNLTIEEFRLAYLDYYLD 272 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHH---HTTTTCEEEEEEEEECCCCSSCEEC----CTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred CcceeEecccccccccchhhhh---cCccccceeeeccccccCchhhhhc----chhhhccccccchhhhhhhcchhhhh
Confidence 0111122111100 00011111 2223333222211 0 011111 1112222222 22222111111
Q ss_pred eeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccc
Q 000975 817 VCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNH 896 (1205)
Q Consensus 817 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (1205)
... .....+++|+.|++++| .++.+|. .+..+ +|++|++++|... .++. ..+++
T Consensus 273 ~~~------~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~~~-~l~~---------------~~l~~ 326 (570)
T 2z63_A 273 DII------DLFNCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCKFG-QFPT---------------LKLKS 326 (570)
T ss_dssp CST------TTTGGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCBCS-SCCB---------------CBCSS
T ss_pred hch------hhhcCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCccc-ccCc---------------ccccc
Confidence 111 11144677777777776 3555554 23444 7777777776432 2221 34566
Q ss_pred cchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccC--CCCCCCccccCC
Q 000975 897 LHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIW--PNQFPATSYSSQ 974 (1205)
Q Consensus 897 L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~~~~l~ 974 (1205)
|+.|.+.++.....++. ..+++|++|++++|.++... +..+ ..++
T Consensus 327 L~~L~l~~n~~~~~~~~-----------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~ 373 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE-----------------------------VDLPSLEFLDLSRNGLSFKGCCSQSD----FGTT 373 (570)
T ss_dssp CCEEEEESCBSCCBCCC-----------------------------CBCTTCCEEECCSSCCBEEEEEEHHH----HTCS
T ss_pred cCEEeCcCCcccccccc-----------------------------ccCCCCCEEeCcCCccCccccccccc----cccC
Confidence 66666666542211110 34677777777777666542 1111 2567
Q ss_pred CccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcc
Q 000975 975 QLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNL 1054 (1205)
Q Consensus 975 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l 1054 (1205)
+|++|++++| .++.+++. +..+++|++|++++|. +..... ......+++|+.|++++|. +.......+
T Consensus 374 ~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 441 (570)
T 2z63_A 374 SLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSN-LKQMSE-------FSVFLSLRNLIYLDISHTH-TRVAFNGIF 441 (570)
T ss_dssp CCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSE-EESCTT-------SCTTTTCTTCCEEECTTSC-CEECCTTTT
T ss_pred ccCEEECCCC-cccccccc--ccccCCCCEEEccCCc-cccccc-------hhhhhcCCCCCEEeCcCCc-ccccchhhh
Confidence 7777777774 56555432 5567777777777654 222211 0012346777777777753 444444556
Q ss_pred cCCCCcceeeeccCcccc-cccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCcc
Q 000975 1055 VELPSLRQLSINFCPELK-RFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLK 1133 (1205)
Q Consensus 1055 ~~l~~L~~L~i~~C~~L~-~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~ 1133 (1205)
.++++|+.|++++|.-.. .+| ..+..+++|++|++++|. ++.+.... .+.+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p---------------------~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~ 497 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLP---------------------DIFTELRNLTFLDLSQCQ-LEQLSPTA--FNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEEC---------------------SCCTTCTTCCEEECTTSC-CCEECTTT--TTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccch---------------------hhhhcccCCCEEECCCCc-cccCChhh--hhcccCCC
Confidence 677777777777764221 222 344556777777777773 34332222 24467777
Q ss_pred EEEecccccccccccchhHhhccCCcEEEEecCC
Q 000975 1134 VLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECE 1167 (1205)
Q Consensus 1134 ~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~ 1167 (1205)
.|++++| +++. +|...+..+++|+.|++++++
T Consensus 498 ~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 498 VLNMASN-QLKS-VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCC-cCCC-CCHHHhhcccCCcEEEecCCc
Confidence 7877775 4665 344446677777777777754
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.5e-30 Score=317.79 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=136.5
Q ss_pred EEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcCC
Q 000975 517 ISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLE 595 (1205)
Q Consensus 517 lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~ 595 (1205)
.+.+++.+..+|.... ++|++|++++|.+. .+++..|.++++|++|++++|.+..++ ..|+++++|++|+|++|.+.
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 5666778888887653 78999999999987 444445689999999999999998775 67999999999999999988
Q ss_pred C-C-ccccccccCcEEEcccCCCCc--cchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCC
Q 000975 596 D-V-ARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQS 671 (1205)
Q Consensus 596 ~-~-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 671 (1205)
. + ..|+++++|++|++++|.++. +|..++++++|++|++++|..+..+|+..++++++|++|++++|.+.....
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-- 165 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-- 165 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT--
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh--
Confidence 8 4 459999999999999999885 467789999999999999877888887779999999999999887664322
Q ss_pred ccchHhhccCCCCcEEEEe
Q 000975 672 NASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 672 ~~~l~~L~~L~~L~~L~l~ 690 (1205)
..+..+++|+.|+++
T Consensus 166 ----~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 166 ----QSLKSIRDIHHLTLH 180 (549)
T ss_dssp ----TTTTTCSEEEEEEEE
T ss_pred ----hhhhccccCceEecc
Confidence 456777778887776
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.1e-30 Score=314.27 Aligned_cols=502 Identities=18% Similarity=0.149 Sum_probs=332.4
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~ 613 (1205)
++++.++..+. .+|..+ .+++++|++++|.++.++ ..|.++++|++|+|++|.++. +..|+++++|++|++++
T Consensus 10 ~~~~c~~~~l~-~ip~~l---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCS-SCCSSS---CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCcc-ccCCCc---cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 34555555554 677654 468999999999999875 579999999999999999988 47799999999999999
Q ss_pred CCCCccc-hhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecc
Q 000975 614 SHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP 692 (1205)
Q Consensus 614 ~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~ 692 (1205)
|.++.+| ..++++++|++|++++|. +..+++..++++++|++|++++|.+..++- ...+.++++|+.|+++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~l-----p~~~~~l~~L~~L~l~~- 158 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKL-----PEYFSNLTNLEHLDLSS- 158 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCC-----CGGGGGCTTCCEEECTT-
T ss_pred CcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecC-----hhhhcccCCCCEEeCcC-
Confidence 9999886 679999999999999975 888877669999999999999998764210 15688889999888752
Q ss_pred hhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhh----chhhcccccCchhhhhhh
Q 000975 693 DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT----EDLYLDNLNGIQNIVQEL 768 (1205)
Q Consensus 693 ~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~l 768 (1205)
|.+.. .+......+++| ..|++.++.........+
T Consensus 159 ----------------n~l~~-------------------------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 159 ----------------NKIQS-------------------------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp ----------------SCCCE-------------------------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred ----------------Cccce-------------------------ecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 22100 000011113444 455666554332222222
Q ss_pred ccCCCccccceEEeecCCceeEeecCCCCCccccccccccc--cc---ccccceeccccccccccccCC--CcCeeeeec
Q 000975 769 DNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLC--NL---ILLEKVCGSQVQLTEDNRSFT--NLRIINIEQ 841 (1205)
Q Consensus 769 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~--~~---~~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~ 841 (1205)
. ..+|+.|++++|..-..... .....++.++.+.+. .. ..+..+....+ ..++ .++.+.+.+
T Consensus 198 ---~-~~~L~~L~l~~n~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~------~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 198 ---K-EIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL------EGLCNLTIEEFRLAY 266 (570)
T ss_dssp ---T-TCEEEEEEEESCCSCTTHHH-HHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT------GGGGGSEEEEEEEEE
T ss_pred ---c-cCcceeEecccccccccchh-hhhcCccccceeeeccccccCchhhhhcchhhh------ccccccchhhhhhhc
Confidence 2 23799999988731100000 001112222222211 11 11111111111 1122 356667776
Q ss_pred CCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCC
Q 000975 842 CHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTG 921 (1205)
Q Consensus 842 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 921 (1205)
+..+....+. .+..+++|++|++++|. +..++.. +..+ +|+.|++.+|. +..++.
T Consensus 267 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~-l~~l~~~-------------~~~~-~L~~L~l~~n~-~~~l~~-------- 321 (570)
T 2z63_A 267 LDYYLDDIID-LFNCLTNVSSFSLVSVT-IERVKDF-------------SYNF-GWQHLELVNCK-FGQFPT-------- 321 (570)
T ss_dssp TTEEESCSTT-TTGGGTTCSEEEEESCE-ECSCCBC-------------CSCC-CCSEEEEESCB-CSSCCB--------
T ss_pred chhhhhhchh-hhcCcCcccEEEecCcc-chhhhhh-------------hccC-CccEEeeccCc-ccccCc--------
Confidence 6444444332 35778999999999975 3344321 1334 88889888864 333332
Q ss_pred CCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccc-hhhHHhhc
Q 000975 922 GSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFS-SSMVNSLK 1000 (1205)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~~~l~ 1000 (1205)
..+++|+.|++++|.+....+. ..+++|++|++++| .++.... ...+..++
T Consensus 322 ---------------------~~l~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 322 ---------------------LKLKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTT 373 (570)
T ss_dssp ---------------------CBCSSCCEEEEESCBSCCBCCC------CBCTTCCEEECCSS-CCBEEEEEEHHHHTCS
T ss_pred ---------------------ccccccCEEeCcCCcccccccc------ccCCCCCEEeCcCC-ccCccccccccccccC
Confidence 3488999999999977655433 26899999999995 6665521 24577899
Q ss_pred cccEEEEccccccccccccccccccccccccccccceeccccCCCccccC-CCcccCCCCcceeeeccCccccccccccc
Q 000975 1001 QLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFG-IGNLVELPSLRQLSINFCPELKRFICAHA 1079 (1205)
Q Consensus 1001 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~-~~~l~~l~~L~~L~i~~C~~L~~l~~~~~ 1079 (1205)
+|++|++++|. +..++. . ...+++|+.|++++|. +.... ...+.++++|++|++++|.-....+
T Consensus 374 ~L~~L~l~~n~-l~~~~~----~-----~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 438 (570)
T 2z63_A 374 SLKYLDLSFNG-VITMSS----N-----FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---- 438 (570)
T ss_dssp CCCEEECCSCS-EEEEEE----E-----EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT----
T ss_pred ccCEEECCCCc-cccccc----c-----ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch----
Confidence 99999999875 444432 1 3458999999999954 44443 3467889999999999975333222
Q ss_pred ccccCCCCCCCCcccccccccccCcceeeeecccccc-hhhccCCCCCCcccCccEEEecccccccccccchhHhhccCC
Q 000975 1080 VEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNL-RKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKL 1158 (1205)
Q Consensus 1080 ~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l-~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL 1158 (1205)
..+..+++|++|++++|.-. ..++.. .+.+++|+.|++++|. ++...|.. +..+++|
T Consensus 439 -----------------~~~~~l~~L~~L~l~~n~l~~~~~p~~---~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L 496 (570)
T 2z63_A 439 -----------------GIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSL 496 (570)
T ss_dssp -----------------TTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSC-CCEECTTT-TTTCTTC
T ss_pred -----------------hhhhcCCcCcEEECcCCcCccccchhh---hhcccCCCEEECCCCc-cccCChhh-hhcccCC
Confidence 34456899999999999633 234422 3568999999999975 66645654 7899999
Q ss_pred cEEEEecCCCceeeeeccCcccccccccEEEeccCC
Q 000975 1159 EHLSVIECESLKEITEKADHRKAFSQSISLKLVKLP 1194 (1205)
Q Consensus 1159 ~~L~i~~C~~l~~~~~~~~~~~~~~~L~~l~i~~~p 1194 (1205)
++|++++| .+..++...- ..+++|+.++++++|
T Consensus 497 ~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 497 QVLNMASN-QLKSVPDGIF--DRLTSLQKIWLHTNP 529 (570)
T ss_dssp CEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSC
T ss_pred CEEeCCCC-cCCCCCHHHh--hcccCCcEEEecCCc
Confidence 99999997 6777665321 346677777776643
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6.5e-30 Score=326.22 Aligned_cols=510 Identities=19% Similarity=0.173 Sum_probs=351.2
Q ss_pred hcCCCcEEEccCCCCCCCCC-cc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~-~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~ 586 (1205)
.+.++++|++++|.+..++. .+ ++++|++|++++|...+.+++..|.++++|++|+|++|.+..+ |..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 67899999999999988754 33 9999999999999777788777789999999999999999977 888999999999
Q ss_pred EEccCCcCCC--Ccc--ccccccCcEEEcccCCCCcc--chhccCCCccCEEeccCCCCCCccChhhhcCC--CCCCEEE
Q 000975 587 LSFDCCHLED--VAR--VGDLAKLEILSFRNSHIEQL--PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRL--SRLNELY 658 (1205)
Q Consensus 587 L~L~~~~l~~--~~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L--~~L~~L~ 658 (1205)
|+|++|.+.+ |.. ++++++|++|++++|.++.+ +..+++|++|++|++++|. +..+.+..++.+ ++|++|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEE
Confidence 9999999886 544 99999999999999999876 3579999999999999976 666555557777 8999999
Q ss_pred ccCCcCccccCCCccchHhhccCC------CCcEEEEecchhh-------h---ccccccccccccceEEEccccccCCc
Q 000975 659 MGNSFTRKVEGQSNASVVELKQLS------SLTILDMHIPDAQ-------L---LLEDLISLDLERYRIFIGDVWNWSGK 722 (1205)
Q Consensus 659 l~~~~~~~~~~~~~~~l~~L~~L~------~L~~L~l~~~~~~-------~---~~~~L~~l~L~~~~i~~~~~~~~~~~ 722 (1205)
+++|.+..... ..+..+. +|+.|+++..... . ....+..+.+..+.+. .....
T Consensus 181 L~~n~l~~~~~------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~--~~~~~--- 249 (844)
T 3j0a_A 181 LAANSLYSRVS------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG--AGFGF--- 249 (844)
T ss_dssp ECCSBSCCCCC------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB--CSSSC---
T ss_pred CCCCccccccc------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc--ccccc---
Confidence 99987653221 1122222 4888888732111 0 0122233333322110 00000
Q ss_pred cCccceEEeeccCcccch-hhHHH-HhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcc
Q 000975 723 YECSRTLKLKLDNSIYLG-YGIKK-LLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIF 800 (1205)
Q Consensus 723 ~~~l~~l~L~~~~~~~~~-~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 800 (1205)
+...... ..+.. ..++|+.|+++++.........+ ..+++|+.|++++|. +..+.. .....+
T Consensus 250 -----------~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-i~~~~~-~~~~~l 313 (844)
T 3j0a_A 250 -----------HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNK-INKIAD-EAFYGL 313 (844)
T ss_dssp -----------SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS---SSCCCCCEEEEESCC-CCEECT-TTTTTC
T ss_pred -----------cccCCCChhhhhccccCCccEEECCCCcccccChhhh---hcCCCCCEEECCCCc-CCCCCh-HHhcCC
Confidence 0000000 00000 12578888888765443333334 788999999999984 444422 134567
Q ss_pred cccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCC
Q 000975 801 PLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETD 880 (1205)
Q Consensus 801 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 880 (1205)
++|+.|+++++ .+..+....+ ..+++|+.|++++| .+..+++. .+..+++|++|++++|. +..+
T Consensus 314 ~~L~~L~Ls~N-~l~~~~~~~~------~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i------ 377 (844)
T 3j0a_A 314 DNLQVLNLSYN-LLGELYSSNF------YGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTI------ 377 (844)
T ss_dssp SSCCEEEEESC-CCSCCCSCSC------SSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCC------
T ss_pred CCCCEEECCCC-CCCccCHHHh------cCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcc------
Confidence 88999999875 3333322222 56899999999998 57777653 34678999999999964 3222
Q ss_pred CCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccc
Q 000975 881 NHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIER 960 (1205)
Q Consensus 881 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 960 (1205)
..+++|+.|.++++. +..++. ...+++.|++++|.++.
T Consensus 378 -----------~~~~~L~~L~l~~N~-l~~l~~------------------------------~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 378 -----------HFIPSIPDIFLSGNK-LVTLPK------------------------------INLTANLIHLSENRLEN 415 (844)
T ss_dssp -----------SSCCSCSEEEEESCC-CCCCCC------------------------------CCTTCCEEECCSCCCCS
T ss_pred -----------cCCCCcchhccCCCC-cccccc------------------------------cccccceeecccCcccc
Confidence 336788888888753 434332 25678899999998877
Q ss_pred cCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceecc
Q 000975 961 IWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSL 1040 (1205)
Q Consensus 961 ~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 1040 (1205)
+....+ ...+++|+.|++++ ++++..++...+..+++|+.|++++|. ++.....+. .......+++|+.|++
T Consensus 416 l~~~~~---~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~---~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 416 LDILYF---LLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETEL---CWDVFEGLSHLQVLYL 487 (844)
T ss_dssp STTHHH---HTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCC---CSSCSSCBCCEECCCC
T ss_pred Cchhhh---hhcCCccceeeCCC-CcccccccccccccCCccccccCCCCc-ccccccccc---chhhhcCcccccEEEC
Confidence 632211 12678999999999 477766544345567899999998854 433321000 0012345789999999
Q ss_pred ccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhc
Q 000975 1041 SHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIW 1120 (1205)
Q Consensus 1041 ~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~ 1120 (1205)
++| .++.++...+.++++|+.|+++++ +++.+++.. . .++|+.|++++|. ++.+.
T Consensus 488 s~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~---------------------~-~~~L~~L~Ls~N~-l~~~~ 542 (844)
T 3j0a_A 488 NHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND---------------------L-PANLEILDISRNQ-LLAPN 542 (844)
T ss_dssp CHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC---------------------C-CSCCCEEEEEEEC-CCCCC
T ss_pred CCC-cccccChhHccchhhhheeECCCC-CCCccChhh---------------------h-hccccEEECCCCc-CCCCC
Confidence 995 788888778889999999999984 677765211 1 2789999999984 44443
Q ss_pred cCCCCCCcccCccEEEecccccc
Q 000975 1121 HHQLASGSFSKLKVLHVEYCDEL 1143 (1205)
Q Consensus 1121 ~~~~~~~~l~sL~~L~i~~c~~L 1143 (1205)
.. .+++|+.|++++++-.
T Consensus 543 ~~-----~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 543 PD-----VFVSLSVLDITHNKFI 560 (844)
T ss_dssp SC-----CCSSCCEEEEEEECCC
T ss_pred hh-----HhCCcCEEEecCCCcc
Confidence 32 2578999999886543
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.6e-29 Score=308.75 Aligned_cols=173 Identities=20% Similarity=0.310 Sum_probs=145.8
Q ss_pred hcCCCcEEEccCCCCCCCCC-cc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~-~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~ 586 (1205)
....++++++++|.+..++. .+ ++++|++|++++|.+. .+++..|.++++|++|++++|.+..+|.. |+++++|++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 34689999999999988754 33 8999999999999998 46656679999999999999999988665 999999999
Q ss_pred EEccCCcCCC---CccccccccCcEEEcccCC-CCccc-hhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 587 LSFDCCHLED---VARVGDLAKLEILSFRNSH-IEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 587 L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
|++++|.++. +..++++++|++|++++|. +..+| ..+.++++|++|++++|. +....+..++++++|++|++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEeccc
Confidence 9999999874 5789999999999999997 67887 579999999999999976 6665555699999999999998
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
|....++. ..+..+++|+.|+++
T Consensus 182 n~~~~~~~------~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 182 SESAFLLE------IFADILSSVRYLELR 204 (549)
T ss_dssp SBSTTHHH------HHHHSTTTBSEEEEE
T ss_pred Ccccccch------hhHhhcccccEEEcc
Confidence 87654432 224567888888887
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.1e-28 Score=307.72 Aligned_cols=150 Identities=22% Similarity=0.277 Sum_probs=125.0
Q ss_pred EEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcC
Q 000975 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHL 594 (1205)
Q Consensus 516 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l 594 (1205)
.++-++..+..+|..+. +++++|++++|.+. .+|+..|.++++|++|+|++|.|+.+|+ +|.+|++|++|+|++|++
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44555566788887552 47899999999997 7887778999999999999999998865 599999999999999999
Q ss_pred CC-C-ccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccC-hhhhcCCCCCCEEEccCCcCcccc
Q 000975 595 ED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 595 ~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
+. | ..|++|.+|++|++++|+++.+|. .+++|++|++|++++|. +..++ +..++.+++|++|++++|.+..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccc
Confidence 88 4 678999999999999999999876 48999999999999976 55432 344889999999999999877554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=289.51 Aligned_cols=460 Identities=15% Similarity=0.128 Sum_probs=278.0
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
++++++++.+..+|..+. ++|++|++++|.+. .+++..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 678999999999987665 89999999999987 56666678999999999999999877 6789999999999999999
Q ss_pred CCC-CccccccccCcEEEcccCCCCc--cchhccCCCccCEEeccCCCCCCccChhhhcCCCCC--CEEEccCCcC--cc
Q 000975 594 LED-VARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL--NELYMGNSFT--RK 666 (1205)
Q Consensus 594 l~~-~~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L--~~L~l~~~~~--~~ 666 (1205)
++. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+ ..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccc
Confidence 888 444 89999999999999885 57889999999999999965 544 236777787 9999988865 21
Q ss_pred ccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHH
Q 000975 667 VEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKL 746 (1205)
Q Consensus 667 ~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 746 (1205)
.. ...+..+.. +.+++. ++++.+... .+. .....
T Consensus 155 ~~------~~~l~~l~~-~~l~l~---------------l~~n~~~~~-~~~-----------------------~~~~~ 188 (520)
T 2z7x_B 155 ED------PEGLQDFNT-ESLHIV---------------FPTNKEFHF-ILD-----------------------VSVKT 188 (520)
T ss_dssp CC------TTTTTTCCE-EEEEEE---------------CCSSSCCCC-CCC-----------------------CCCTT
T ss_pred cc------ccccccccc-ceEEEE---------------eccCcchhh-hhh-----------------------hhhhc
Confidence 11 123333332 333332 222221100 000 00001
Q ss_pred hhhhchhhccccc---CchhhhhhhccCCCccccceEEeecCCceeEee-cC-CCCCcccccccccccccccccceeccc
Q 000975 747 LKTTEDLYLDNLN---GIQNIVQELDNGEGFPRLKHLHVQNDPKILCIA-NS-EGPVIFPLLQSLFLCNLILLEKVCGSQ 821 (1205)
Q Consensus 747 l~~L~~L~l~~~~---~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~-~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~ 821 (1205)
+++|+.|++.++. .+......++.++.+++|+.|++.++. +.... .. ......++|+.|++.++.--..++...
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred ccceeeccccccccccccceeecchhhhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 2444445444432 111111112222667888888887663 11100 00 000012345555554432111111100
Q ss_pred cccccccccCCCcCeeeeecCCCcccccchHHHHHc---ccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccc
Q 000975 822 VQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKL---LQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLH 898 (1205)
Q Consensus 822 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 898 (1205)
+. ...+.+++|+.++++++.- .+|... +..+ ++|+.|++++|..
T Consensus 268 ~~--~~~~~l~~L~~l~l~~n~~--~~p~~~-~~~~~~~~~L~~L~l~~n~l---------------------------- 314 (520)
T 2z7x_B 268 FD--YSGTSLKALSIHQVVSDVF--GFPQSY-IYEIFSNMNIKNFTVSGTRM---------------------------- 314 (520)
T ss_dssp CC--CCSCCCCEEEEEEEEECCC--CSCTHH-HHHHHHTCCCSEEEEESSCC----------------------------
T ss_pred hh--cccccCceeEeccccccce--ecchhh-hhcccccCceeEEEcCCCcc----------------------------
Confidence 00 0003455566666665532 343222 1222 3466666655421
Q ss_pred hhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccE
Q 000975 899 SLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTE 978 (1205)
Q Consensus 899 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~ 978 (1205)
..... ...+++|++|++++|.+++..+..+. .+++|++
T Consensus 315 ----------~~~~~----------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~ 352 (520)
T 2z7x_B 315 ----------VHMLC----------------------------PSKISPFLHLDFSNNLLTDTVFENCG----HLTELET 352 (520)
T ss_dssp ----------CCCCC----------------------------CSSCCCCCEEECCSSCCCTTTTTTCC----CCSSCCE
T ss_pred ----------ccccc----------------------------hhhCCcccEEEeECCccChhhhhhhc----cCCCCCE
Confidence 11000 02367888999999988875555543 7889999
Q ss_pred EEecccCCcccccc-hhhHHhhccccEEEEcccccccc-ccccccccccccccccccccceeccccCCCccccCCCcccC
Q 000975 979 LTVDKCGCLKFLFS-SSMVNSLKQLQRLEISQCASMQG-IIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVE 1056 (1205)
Q Consensus 979 L~l~~C~~L~~l~~-~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~ 1056 (1205)
|++++| +++.++. ...+..+++|++|++++|. +.. ++. . ....+++|+.|++++|.--...+ ..+.
T Consensus 353 L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~------~--~~~~l~~L~~L~Ls~N~l~~~~~-~~l~- 420 (520)
T 2z7x_B 353 LILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK------G--DCSWTKSLLSLNMSSNILTDTIF-RCLP- 420 (520)
T ss_dssp EECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG------C--SCCCCTTCCEEECCSSCCCGGGG-GSCC-
T ss_pred EEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCccccc------c--hhccCccCCEEECcCCCCCcchh-hhhc-
Confidence 999984 6775432 1346788999999998865 433 432 0 12346888888888864322222 1221
Q ss_pred CCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEE
Q 000975 1057 LPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLH 1136 (1205)
Q Consensus 1057 l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~ 1136 (1205)
++|+.|++++| +++.+| ..+..+++|++|++++| .++.++... ...+++|+.|+
T Consensus 421 -~~L~~L~Ls~N-~l~~ip---------------------~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~ 474 (520)
T 2z7x_B 421 -PRIKVLDLHSN-KIKSIP---------------------KQVVKLEALQELNVASN-QLKSVPDGI--FDRLTSLQKIW 474 (520)
T ss_dssp -TTCCEEECCSS-CCCCCC---------------------GGGGGCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEE
T ss_pred -ccCCEEECCCC-cccccc---------------------hhhhcCCCCCEEECCCC-cCCccCHHH--hccCCcccEEE
Confidence 68888888885 455554 33456788888888887 566666542 24578888888
Q ss_pred eccccc
Q 000975 1137 VEYCDE 1142 (1205)
Q Consensus 1137 i~~c~~ 1142 (1205)
+++|+-
T Consensus 475 l~~N~~ 480 (520)
T 2z7x_B 475 LHTNPW 480 (520)
T ss_dssp CCSSCB
T ss_pred CcCCCC
Confidence 888663
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.3e-27 Score=298.26 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=136.1
Q ss_pred HhcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCc
Q 000975 509 AARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLR 585 (1205)
Q Consensus 509 ~~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr 585 (1205)
.++..+++|++++|.+..+++. + ++++|++|++++|.+. .++++.|.++++|++|+|++|.++.+|. .|.++++|+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4567899999999999999864 3 8999999999999997 6888888999999999999999999975 589999999
Q ss_pred EEEccCCcCCC-C-ccccccccCcEEEcccCCCCc--cchhccCCCccCEEeccCCCCCCccChhhhcCCCCCC----EE
Q 000975 586 TLSFDCCHLED-V-ARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN----EL 657 (1205)
Q Consensus 586 ~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~----~L 657 (1205)
+|+|++|.++. + ..|+++++|++|++++|.++. +|..++++++|++|++++|. +..+++..+..+.+++ .+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhh
Confidence 99999999998 3 579999999999999999884 57889999999999999965 8888777676665544 67
Q ss_pred EccCCcCcccc
Q 000975 658 YMGNSFTRKVE 668 (1205)
Q Consensus 658 ~l~~~~~~~~~ 668 (1205)
+++.|.+..++
T Consensus 207 ~ls~n~l~~i~ 217 (635)
T 4g8a_A 207 DLSLNPMNFIQ 217 (635)
T ss_dssp ECTTCCCCEEC
T ss_pred hcccCcccccC
Confidence 77777665544
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4e-28 Score=298.83 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCcCCC-CccccccccCcEEEcccCCCCc------------------cchhcc--CCCccCEEeccCCCCCCccChhhhc
Q 000975 591 CCHLED-VARVGDLAKLEILSFRNSHIEQ------------------LPEQIG--NLTRLKLLDLSNCSKLKVIKPEVIS 649 (1205)
Q Consensus 591 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~~~~~~l~ 649 (1205)
+|.++. |..++++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|.. ++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-Hh
Confidence 345666 7789999999999999999887 899988 9999999999998766677755 89
Q ss_pred CCCCCCEEEccCCc-Cc
Q 000975 650 RLSRLNELYMGNSF-TR 665 (1205)
Q Consensus 650 ~L~~L~~L~l~~~~-~~ 665 (1205)
++++|++|++++|. +.
T Consensus 271 ~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 271 ALPEMQLINVACNRGIS 287 (636)
T ss_dssp TCSSCCEEECTTCTTSC
T ss_pred cCCCCCEEECcCCCCCc
Confidence 99999999999886 54
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.1e-28 Score=301.26 Aligned_cols=398 Identities=15% Similarity=0.183 Sum_probs=216.5
Q ss_pred CCCcEEEccCCCCC-CCCCcc-CCCcceEEEe-ecCCCCCC---------------------------------------
Q 000975 512 KNPTAISIPFRDIS-ELPDSL-QCTRLKLFLL-FTEDSSLQ--------------------------------------- 549 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~-~l~~~~-~~~~Lr~L~l-~~n~~~~~--------------------------------------- 549 (1205)
.++..|+++++.+. .+|+.+ ++++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788888888884 567666 8899999999 66643322
Q ss_pred -------------------------------------CChhhhhCCCceeEEEeeCCCCCC------------------c
Q 000975 550 -------------------------------------IPNQFFDGMTELLVLHLTGIHFPS------------------L 574 (1205)
Q Consensus 550 -------------------------------------~~~~~~~~l~~Lr~L~Ls~~~i~~------------------l 574 (1205)
+|.. |.++++|++|+|++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 4544 4667777777777777776 7
Q ss_pred ccccC--CCcCCcEEEccCCcCCC--CccccccccCcEEEcccCC-CCc--cchhccCCC-------ccCEEeccCCCCC
Q 000975 575 PLSLG--SLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSH-IEQ--LPEQIGNLT-------RLKLLDLSNCSKL 640 (1205)
Q Consensus 575 p~~i~--~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~~l 640 (1205)
|..++ ++++|++|+|++|.+.. |..|+++++|++|++++|+ ++. +|..+++++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 77766 77777777777776554 6677777777777777776 663 666555554 77777777755 5
Q ss_pred CccCh-hhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEcccccc
Q 000975 641 KVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNW 719 (1205)
Q Consensus 641 ~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~ 719 (1205)
..+|. ..++++++|++|++++|.+..++ .+..+++|+.|+++ +|.+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--------~~~~L~~L~~L~Ls-----------------~N~l-------- 607 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--------AFGTNVKLTDLKLD-----------------YNQI-------- 607 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC--------CCCTTSEESEEECC-----------------SSCC--------
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch--------hhcCCCcceEEECc-----------------CCcc--------
Confidence 56665 23777777777777776554322 23444444444433 3322
Q ss_pred CCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhccCCCccc-cceEEeecCCceeEeecCCCCC
Q 000975 720 SGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPR-LKHLHVQNDPKILCIANSEGPV 798 (1205)
Q Consensus 720 ~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~-L~~L~L~~~~~l~~~~~~~~~~ 798 (1205)
. .++..+ ..+++ |+.|++++|. +..++......
T Consensus 608 -----------------------------------------~-~lp~~l---~~l~~~L~~L~Ls~N~-L~~lp~~~~~~ 641 (876)
T 4ecn_A 608 -----------------------------------------E-EIPEDF---CAFTDQVEGLGFSHNK-LKYIPNIFNAK 641 (876)
T ss_dssp -----------------------------------------S-CCCTTS---CEECTTCCEEECCSSC-CCSCCSCCCTT
T ss_pred -----------------------------------------c-cchHHH---hhccccCCEEECcCCC-CCcCchhhhcc
Confidence 1 111112 34455 5555555553 33333222222
Q ss_pred cccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhccc
Q 000975 799 IFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEE 878 (1205)
Q Consensus 799 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 878 (1205)
..++|+.|+++++.--..++. ++.....-.+++|+.|++++| .++.+|. ..+..+++|+.|++++|. +..++...
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N~-L~~ip~~~ 716 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRN--ISCSMDDYKGINASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNNL-MTSIPENS 716 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSS--CSSCTTTCCCCCEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSCC-CSCCCTTS
T ss_pred ccCCCCEEECcCCcCCCcccc--chhhhccccCCCcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCCc-CCccChHH
Confidence 223355555554321111100 000000013458999999998 5667754 345678999999999863 33444221
Q ss_pred CCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccc
Q 000975 879 TDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINI 958 (1205)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 958 (1205)
..... ..+..+++|+.|+++++ +++.++... ....+++|+.|+|++|.+
T Consensus 717 ~~~~~-----~~l~nl~~L~~L~Ls~N-~L~~lp~~l-------------------------~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 717 LKPKD-----GNYKNTYLLTTIDLRFN-KLTSLSDDF-------------------------RATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp SSCTT-----SCCTTGGGCCEEECCSS-CCCCCCGGG-------------------------STTTCTTCCEEECCSSCC
T ss_pred hcccc-----ccccccCCccEEECCCC-CCccchHHh-------------------------hhccCCCcCEEEeCCCCC
Confidence 10000 00122346666666654 333332210 001356666666666666
Q ss_pred cccCCCCCCCccccCCCccEEEeccc-----CCcccccchhhHHhhccccEEEEcccccccccccccccccccccccccc
Q 000975 959 ERIWPNQFPATSYSSQQLTELTVDKC-----GCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFP 1033 (1205)
Q Consensus 959 ~~~~~~~~~~~~~~l~~L~~L~l~~C-----~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 1033 (1205)
++++.. ...+++|+.|+|++| +++....| ..+..+++|+.|+|++|. +..++. ..++
T Consensus 766 ~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~-L~~Ip~-----------~l~~ 827 (876)
T 4ecn_A 766 SSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSND-IRKVDE-----------KLTP 827 (876)
T ss_dssp SSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSC-CCBCCS-----------CCCS
T ss_pred Cccchh-----hhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCC-CCccCH-----------hhcC
Confidence 554221 125566666666542 22222212 234556666666666543 344432 1235
Q ss_pred ccceeccccCC
Q 000975 1034 KLVYLSLSHLP 1044 (1205)
Q Consensus 1034 ~L~~L~l~~c~ 1044 (1205)
+|+.|+|++|+
T Consensus 828 ~L~~LdLs~N~ 838 (876)
T 4ecn_A 828 QLYILDIADNP 838 (876)
T ss_dssp SSCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 66666666643
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.2e-27 Score=294.49 Aligned_cols=398 Identities=15% Similarity=0.173 Sum_probs=223.3
Q ss_pred CCCcEEEccCCCCC-CCCCcc-CCCcceEEEeecCCC-------------------------------------------
Q 000975 512 KNPTAISIPFRDIS-ELPDSL-QCTRLKLFLLFTEDS------------------------------------------- 546 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~-~l~~~~-~~~~Lr~L~l~~n~~------------------------------------------- 546 (1205)
.+++.|+++++.+. .+|+.+ ++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46788888888884 566666 899999999988843
Q ss_pred -----------------------------------CCCCChhhhhCCCceeEEEeeCCCCCC------------------
Q 000975 547 -----------------------------------SLQIPNQFFDGMTELLVLHLTGIHFPS------------------ 573 (1205)
Q Consensus 547 -----------------------------------~~~~~~~~~~~l~~Lr~L~Ls~~~i~~------------------ 573 (1205)
.+ +|.. |.++++|++|+|++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 12 5554 4677778888888777776
Q ss_pred cccccC--CCcCCcEEEccCCcCCC--CccccccccCcEEEcccCC-CC--ccchhccCC------CccCEEeccCCCCC
Q 000975 574 LPLSLG--SLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSH-IE--QLPEQIGNL------TRLKLLDLSNCSKL 640 (1205)
Q Consensus 574 lp~~i~--~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~~l 640 (1205)
+|..++ ++++|++|+|++|.+.. |..++++++|++|++++|+ ++ .+|..+++| ++|++|++++|. +
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 777777 77788888887777655 6777777788888887776 76 377777666 777888877765 5
Q ss_pred CccCh-hhhcCCCCCCEEEccCCcCc-cccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccc
Q 000975 641 KVIKP-EVISRLSRLNELYMGNSFTR-KVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWN 718 (1205)
Q Consensus 641 ~~~~~-~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~ 718 (1205)
..+|. +.++++++|++|++++|.+. .++ .+..+ ++|+.+++++|.+. ..+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------~~~~l-----------------~~L~~L~L~~N~l~--~lp- 369 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP--------AFGSE-----------------IKLASLNLAYNQIT--EIP- 369 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC--------CCEEE-----------------EEESEEECCSSEEE--ECC-
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh--------hhCCC-----------------CCCCEEECCCCccc--ccc-
Confidence 56765 23777777787777777554 221 22223 33444445555542 111
Q ss_pred cCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhccCCCccc-cceEEeecCCceeEeecCCCC
Q 000975 719 WSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPR-LKHLHVQNDPKILCIANSEGP 797 (1205)
Q Consensus 719 ~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~-L~~L~L~~~~~l~~~~~~~~~ 797 (1205)
..+ ..+++ |++|++++|. +..++.....
T Consensus 370 -----------------------------------------------~~l---~~l~~~L~~L~Ls~N~-l~~lp~~~~~ 398 (636)
T 4eco_A 370 -----------------------------------------------ANF---CGFTEQVENLSFAHNK-LKYIPNIFDA 398 (636)
T ss_dssp -----------------------------------------------TTS---EEECTTCCEEECCSSC-CSSCCSCCCT
T ss_pred -----------------------------------------------Hhh---hhhcccCcEEEccCCc-Ccccchhhhh
Confidence 111 23344 4555554442 2233222222
Q ss_pred Ccccccccccccccccccceeccccc-cccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhc
Q 000975 798 VIFPLLQSLFLCNLILLEKVCGSQVQ-LTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVG 876 (1205)
Q Consensus 798 ~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 876 (1205)
..+++|+.|+++++.--...+ ..+. .....-.+++|+.|++++| .++.+|+ ..+..+++|++|++++|.. ..++.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~l-~~i~~ 474 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNML-TEIPK 474 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSCC-SBCCS
T ss_pred cccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCCC-CCcCH
Confidence 223344455444422111000 0000 0000014568999999998 5667765 3456789999999999753 34442
Q ss_pred ccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccc
Q 000975 877 EETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSI 956 (1205)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 956 (1205)
...... ...+..+++|+.|+++++. ++.++... ....+++|+.|+|++|
T Consensus 475 ~~~~~~-----~~~~~~l~~L~~L~Ls~N~-l~~lp~~~-------------------------~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 475 NSLKDE-----NENFKNTYLLTSIDLRFNK-LTKLSDDF-------------------------RATTLPYLVGIDLSYN 523 (636)
T ss_dssp SSSEET-----TEECTTGGGCCEEECCSSC-CCBCCGGG-------------------------STTTCTTCCEEECCSS
T ss_pred HHhccc-----cccccccCCccEEECcCCc-CCccChhh-------------------------hhccCCCcCEEECCCC
Confidence 211000 0000122366666666542 33332200 0013566777777777
Q ss_pred cccccCCCCCCCccccCCCccEEEeccc-----CCcccccchhhHHhhccccEEEEcccccccccccccccccccccccc
Q 000975 957 NIERIWPNQFPATSYSSQQLTELTVDKC-----GCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMV 1031 (1205)
Q Consensus 957 ~l~~~~~~~~~~~~~~l~~L~~L~l~~C-----~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 1031 (1205)
.+++++.. + ..+++|+.|++++| +++....| ..+..+++|++|++++|. ++.++. ..
T Consensus 524 ~l~~ip~~-~----~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~ip~-----------~~ 585 (636)
T 4eco_A 524 SFSKFPTQ-P----LNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSND-IRKVNE-----------KI 585 (636)
T ss_dssp CCSSCCCG-G----GGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSC-CCBCCS-----------CC
T ss_pred CCCCcChh-h----hcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCc-CCccCH-----------hH
Confidence 66654222 1 25667777777432 22222212 235566677777776654 344432 12
Q ss_pred ccccceeccccCC
Q 000975 1032 FPKLVYLSLSHLP 1044 (1205)
Q Consensus 1032 ~~~L~~L~l~~c~ 1044 (1205)
+++|+.|+|++|+
T Consensus 586 ~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 586 TPNISVLDIKDNP 598 (636)
T ss_dssp CTTCCEEECCSCT
T ss_pred hCcCCEEECcCCC
Confidence 3667777777653
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.3e-27 Score=297.55 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=102.4
Q ss_pred CcceEEEeecCCCCCCCChhhhhCCCceeEEEe-eCCCCCCc-cc-----------------------------------
Q 000975 534 TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHL-TGIHFPSL-PL----------------------------------- 576 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~L-s~~~i~~l-p~----------------------------------- 576 (1205)
.++..|+|+++.+.|.+|+.+ +++++|++|+| ++|.+... |-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 579999999999999999775 89999999999 77754210 00
Q ss_pred ----------------ccCCCcCCcEEEccC--CcCCC-CccccccccCcEEEcccCCCCc------------------c
Q 000975 577 ----------------SLGSLINLRTLSFDC--CHLED-VARVGDLAKLEILSFRNSHIEQ------------------L 619 (1205)
Q Consensus 577 ----------------~i~~L~~Lr~L~L~~--~~l~~-~~~i~~L~~L~~L~L~~~~l~~------------------l 619 (1205)
.......++.+.+.. |.++. |..|+++++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 001222333333433 55666 7889999999999999999998 9
Q ss_pred chhcc--CCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCc-Cc
Q 000975 620 PEQIG--NLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF-TR 665 (1205)
Q Consensus 620 p~~i~--~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~-~~ 665 (1205)
|..++ +|++|++|+|++|.....+|.. ++++++|++|++++|. +.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcc
Confidence 99988 9999999999998877778755 9999999999999986 54
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=279.41 Aligned_cols=466 Identities=13% Similarity=0.102 Sum_probs=280.9
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~ 613 (1205)
+++++++|.+. .+|..++ ++|++|++++|.+..++ ..|.++++|++|+|++|.++. |..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 67999999988 7887663 89999999999999875 679999999999999999988 67899999999999999
Q ss_pred CCCCccchhccCCCccCEEeccCCCCCCccC-hhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCC--cEEEEe
Q 000975 614 SHIEQLPEQIGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSL--TILDMH 690 (1205)
Q Consensus 614 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L--~~L~l~ 690 (1205)
|+++.+|.. .+++|++|++++|. +..++ +..++++++|++|++++|.+.. ..+..+++| +.|+++
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---------SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---------GGGGGGTTSCEEEEEEE
T ss_pred CceeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch---------hhccccccceeeEEEee
Confidence 999999977 89999999999976 65532 3449999999999999987652 234555555 777665
Q ss_pred cchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhcc
Q 000975 691 IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN 770 (1205)
Q Consensus 691 ~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 770 (1205)
...... . +..+.+...... +.+ .+.+.++........ . .
T Consensus 147 ~n~l~~---------------~-~~~~~~l~~l~~-~~l----------------------~l~l~~n~~~~~~~~-~-~ 185 (520)
T 2z7x_B 147 LGETYG---------------E-KEDPEGLQDFNT-ESL----------------------HIVFPTNKEFHFILD-V-S 185 (520)
T ss_dssp ECTTTT---------------S-SCCTTTTTTCCE-EEE----------------------EEECCSSSCCCCCCC-C-C
T ss_pred cccccc---------------c-cccccccccccc-ceE----------------------EEEeccCcchhhhhh-h-h
Confidence 221100 0 000000000000 000 111111111100000 0 1
Q ss_pred CCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccc
Q 000975 771 GEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFP 850 (1205)
Q Consensus 771 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 850 (1205)
...+++|+.|++++|... .. +..+... .. ..+.+++|+.|++.+|. +.....
T Consensus 186 ~~~l~~L~~L~l~~n~~~---------~~-----------~~~~~~~---~~----~l~~l~~L~~L~l~~~~-l~~~~~ 237 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLED---------NK-----------CSYFLSI---LA----KLQTNPKLSNLTLNNIE-TTWNSF 237 (520)
T ss_dssp CTTCSEEEECCEEECCST---------TT-----------THHHHHH---HH----GGGGCTTCCEEEEEEEE-EEHHHH
T ss_pred hhcccceeeccccccccc---------cc-----------cceeecc---hh----hhccccchhhccccccc-cCHHHH
Confidence 133444444444444210 00 0000000 00 11456777777777763 222111
Q ss_pred hHHH--HHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCccccc
Q 000975 851 SFMA--EKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITA 928 (1205)
Q Consensus 851 ~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~ 928 (1205)
.... ...++|++|++++|.....++.... .
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~------------------------~------------------------ 269 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDF------------------------D------------------------ 269 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCC------------------------C------------------------
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchh------------------------h------------------------
Confidence 0011 1234677777776542212221000 0
Q ss_pred CCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEc
Q 000975 929 EDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEIS 1008 (1205)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 1008 (1205)
.....+++|+.+++++|.+ .++...+.. ....++|+.|++++| .+...+ ....+++|++|+++
T Consensus 270 -----------~~~~~l~~L~~l~l~~n~~-~~p~~~~~~-~~~~~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 270 -----------YSGTSLKALSIHQVVSDVF-GFPQSYIYE-IFSNMNIKNFTVSGT-RMVHML---CPSKISPFLHLDFS 332 (520)
T ss_dssp -----------CCSCCCCEEEEEEEEECCC-CSCTHHHHH-HHHTCCCSEEEEESS-CCCCCC---CCSSCCCCCEEECC
T ss_pred -----------cccccCceeEeccccccce-ecchhhhhc-ccccCceeEEEcCCC-cccccc---chhhCCcccEEEeE
Confidence 0002367889999998877 443211110 001156999999986 455442 12567899999998
Q ss_pred ccccccc-ccccccccccccccccccccceeccccCCCccccCC--CcccCCCCcceeeeccCcccccccccccccccCC
Q 000975 1009 QCASMQG-IIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGI--GNLVELPSLRQLSINFCPELKRFICAHAVEMSSG 1085 (1205)
Q Consensus 1009 ~c~~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~ 1085 (1205)
+|. ++. ++. ....+++|+.|++++| .++.++. ..+..+++|++|++++|.--..+|..
T Consensus 333 ~n~-l~~~~~~---------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-------- 393 (520)
T 2z7x_B 333 NNL-LTDTVFE---------NCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-------- 393 (520)
T ss_dssp SSC-CCTTTTT---------TCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--------
T ss_pred CCc-cChhhhh---------hhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccc--------
Confidence 865 333 221 1235889999999985 4554321 34678899999999985533325511
Q ss_pred CCCCCCcccccccccccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccchhHhhccCCcEEEEec
Q 000975 1086 GNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIE 1165 (1205)
Q Consensus 1086 ~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~ 1165 (1205)
.+..+++|+.|++++|.-...++... .++|+.|++++| +++. +|.++ ..+++|++|++++
T Consensus 394 ------------~~~~l~~L~~L~Ls~N~l~~~~~~~l-----~~~L~~L~Ls~N-~l~~-ip~~~-~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 394 ------------DCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHSN-KIKS-IPKQV-VKLEALQELNVAS 453 (520)
T ss_dssp ------------SCCCCTTCCEEECCSSCCCGGGGGSC-----CTTCCEEECCSS-CCCC-CCGGG-GGCTTCCEEECCS
T ss_pred ------------hhccCccCCEEECcCCCCCcchhhhh-----cccCCEEECCCC-cccc-cchhh-hcCCCCCEEECCC
Confidence 13457899999999995434443322 269999999997 5776 78764 4899999999999
Q ss_pred CCCceeeeeccCcccccccccEEEeccCC
Q 000975 1166 CESLKEITEKADHRKAFSQSISLKLVKLP 1194 (1205)
Q Consensus 1166 C~~l~~~~~~~~~~~~~~~L~~l~i~~~p 1194 (1205)
| .++++|... -..+++|+.+++.++|
T Consensus 454 N-~l~~l~~~~--~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 454 N-QLKSVPDGI--FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp S-CCCCCCTTT--TTTCTTCCEEECCSSC
T ss_pred C-cCCccCHHH--hccCCcccEEECcCCC
Confidence 7 677777642 0234455555555443
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.5e-26 Score=277.17 Aligned_cols=464 Identities=16% Similarity=0.129 Sum_probs=280.4
Q ss_pred CCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~ 591 (1205)
..++++++++.+..+|.... ++|++|++++|.+. .++...|.++++|++|+|++|.++.+ |..|+++++|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34889999999998887554 78999999999887 56666678999999999999999877 66789999999999999
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccc--hhccCCCccCEEeccCCCCCCccChhhhcCCCCC--CEEEccCCcC--
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL--NELYMGNSFT-- 664 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L--~~L~l~~~~~-- 664 (1205)
|.++. |.. .+++|++|++++|.++.+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.+
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccc
Confidence 99888 544 8899999999999988764 688999999999999865 55432 4555555 9999988866
Q ss_pred ccccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCc--ccchhh
Q 000975 665 RKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNS--IYLGYG 742 (1205)
Q Consensus 665 ~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~--~~~~~~ 742 (1205)
..... ..+..+.. +.+.+.. +.|.+..............++.+.+..+.. ...+..
T Consensus 184 ~~~~~------~~l~~l~~-~~l~l~l---------------~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 184 KGGET------ESLQIPNT-TVLHLVF---------------HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp CSSSC------CEEEECCE-EEEEEEE---------------CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred cccCc------ccccccCc-ceEEEEe---------------cCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 32211 23333321 2333321 111110000000001122333333433320 011111
Q ss_pred H--HHHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCccccccccccccccccc-ceec
Q 000975 743 I--KKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLE-KVCG 819 (1205)
Q Consensus 743 ~--~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~ 819 (1205)
. ...+++++.|++.++.........+......++|++|++++|.-...++........++|+.|.+.++.... .++.
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh
Confidence 1 112345555666554433222222211123458889998887422133222111112556666655433211 1100
Q ss_pred cccccccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccch
Q 000975 820 SQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHS 899 (1205)
Q Consensus 820 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 899 (1205)
..+. ..-..++|+.|++++|. +...+. ...+++|++|++++|..-..++. .+..+++|+.
T Consensus 322 ~~~~---~~~~~~~L~~L~l~~n~-~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~ 381 (562)
T 3a79_B 322 EALY---SVFAEMNIKMLSISDTP-FIHMVC---PPSPSSFTFLNFTQNVFTDSVFQ-------------GCSTLKRLQT 381 (562)
T ss_dssp HHHH---HHHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTTT-------------TCCSCSSCCE
T ss_pred hhhh---hhhccCcceEEEccCCC-cccccC---ccCCCCceEEECCCCccccchhh-------------hhcccCCCCE
Confidence 0000 00012568889988884 333321 14678899999988754332221 1256788888
Q ss_pred hhccCCCcccccCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccc-cCCCCCCCccccCCCccE
Q 000975 900 LALRRLPQLTSSGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIER-IWPNQFPATSYSSQQLTE 978 (1205)
Q Consensus 900 L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~l~~L~~ 978 (1205)
|+++++ +++.++. .......+++|+.|++++|.++. ++...+. .+++|++
T Consensus 382 L~L~~N-~l~~~~~------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----~l~~L~~ 432 (562)
T 3a79_B 382 LILQRN-GLKNFFK------------------------VALMTKNMSSLETLDVSLNSLNSHAYDRTCA----WAESILV 432 (562)
T ss_dssp EECCSS-CCCBTTH------------------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCC----CCTTCCE
T ss_pred EECCCC-CcCCccc------------------------chhhhcCCCCCCEEECCCCcCCCccChhhhc----CcccCCE
Confidence 888875 3433221 00112457889999999998887 5554443 6789999
Q ss_pred EEecccCCcccccchhhHHhh-ccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCC
Q 000975 979 LTVDKCGCLKFLFSSSMVNSL-KQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVEL 1057 (1205)
Q Consensus 979 L~l~~C~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l 1057 (1205)
|++++| +++... ...+ ++|+.|++++| .++.++. . ...+++|+.|++++ +.++.++...+..+
T Consensus 433 L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~----~-----~~~l~~L~~L~L~~-N~l~~l~~~~~~~l 496 (562)
T 3a79_B 433 LNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMSIPK----D-----VTHLQALQELNVAS-NQLKSVPDGVFDRL 496 (562)
T ss_dssp EECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCCCCT----T-----TTSSCCCSEEECCS-SCCCCCCTTSTTTC
T ss_pred EECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcccCh----h-----hcCCCCCCEEECCC-CCCCCCCHHHHhcC
Confidence 999885 554332 2233 68999999886 5666643 1 12588999999998 56778876657888
Q ss_pred CCcceeeeccCccc
Q 000975 1058 PSLRQLSINFCPEL 1071 (1205)
Q Consensus 1058 ~~L~~L~i~~C~~L 1071 (1205)
++|+.|+++++|--
T Consensus 497 ~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 497 TSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCCCEECCSCCBC
T ss_pred CCCCEEEecCCCcC
Confidence 99999999986643
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=6.2e-25 Score=267.85 Aligned_cols=461 Identities=14% Similarity=0.107 Sum_probs=279.5
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcE
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 608 (1205)
.+...+++++++|.+. .+|..+ .++|++|++++|.+..+| ..|+++++|++|+|++|.++. |..|+++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4555689999999988 688866 389999999999999886 579999999999999999988 578999999999
Q ss_pred EEcccCCCCccchhccCCCccCEEeccCCCCCCccC-hhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEE
Q 000975 609 LSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTIL 687 (1205)
Q Consensus 609 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L 687 (1205)
|++++|.++.+|.. .+++|++|++++|. +..++ +..++++++|++|++++|.+... .+..+.++ +|+.|
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L-~L~~L 174 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHL-HLSCI 174 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTS-CEEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC------chhhhhhc-eeeEE
Confidence 99999999999987 89999999999976 77765 35599999999999999876531 22334444 44888
Q ss_pred EEecchh---hhccccccccccccceEEEccccccCCccCccceEEeeccCccc-chhhHHHHhhhhchhhccccc-Cch
Q 000975 688 DMHIPDA---QLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIY-LGYGIKKLLKTTEDLYLDNLN-GIQ 762 (1205)
Q Consensus 688 ~l~~~~~---~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~ 762 (1205)
+++.... ...+..+..+..+...+ .+..+.... .+......+++|+.|++.++. .+.
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l------------------~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHL------------------VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEE------------------EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred EeecccccccccCcccccccCcceEEE------------------EecCccchhhhhhhcccccceEEEecccccccccc
Confidence 8873321 11111221111111111 111111100 000111124667777776643 112
Q ss_pred hhhhhhccCCCccccceEEeecCCceeEee--cCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeee
Q 000975 763 NIVQELDNGEGFPRLKHLHVQNDPKILCIA--NSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIE 840 (1205)
Q Consensus 763 ~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 840 (1205)
.....+.....+++|+.|++.++. +.... ........++|+.|++.++.--..++...+. ...++|+.|.+.
T Consensus 237 ~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~-----~~~~~L~~L~~~ 310 (562)
T 3a79_B 237 RLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT-----YSETALKSLMIE 310 (562)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC-----CCSCSCCEEEEE
T ss_pred hHHHHHHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh-----cccccchheehh
Confidence 222222122667888888887653 11000 0000112247888888775422222211111 012444444444
Q ss_pred cCC--CcccccchHHHHH--cccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccc-cCCCC
Q 000975 841 QCH--RLKHLFPSFMAEK--LLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTS-SGFYL 915 (1205)
Q Consensus 841 ~c~--~l~~l~~~~~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~-l~~~~ 915 (1205)
++. .+ .+|..+.... -.+|++|++++|....... ...+++|+.|+++++. ++. ++
T Consensus 311 ~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---------------~~~l~~L~~L~l~~n~-l~~~~~--- 370 (562)
T 3a79_B 311 HVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC---------------PPSPSSFTFLNFTQNV-FTDSVF--- 370 (562)
T ss_dssp EEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---------------CSSCCCCCEEECCSSC-CCTTTT---
T ss_pred hccccee-ecChhhhhhhhccCcceEEEccCCCcccccC---------------ccCCCCceEEECCCCc-cccchh---
Confidence 332 22 3443222222 2568899998875321110 0346778888887754 222 11
Q ss_pred CCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCC--CCCCCccccCCCccEEEecccCCccc-ccc
Q 000975 916 ETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWP--NQFPATSYSSQQLTELTVDKCGCLKF-LFS 992 (1205)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--~~~~~~~~~l~~L~~L~l~~C~~L~~-l~~ 992 (1205)
.....+++|++|++++|.++++.. ..+. .+++|+.|++++| .++. +|.
T Consensus 371 ------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~l~~L~~L~l~~N-~l~~~~~~ 421 (562)
T 3a79_B 371 ------------------------QGCSTLKRLQTLILQRNGLKNFFKVALMTK----NMSSLETLDVSLN-SLNSHAYD 421 (562)
T ss_dssp ------------------------TTCCSCSSCCEEECCSSCCCBTTHHHHTTT----TCTTCCEEECTTS-CCBSCCSS
T ss_pred ------------------------hhhcccCCCCEEECCCCCcCCcccchhhhc----CCCCCCEEECCCC-cCCCccCh
Confidence 112347888888888888776532 2222 6788888888884 6665 543
Q ss_pred hhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccc
Q 000975 993 SSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELK 1072 (1205)
Q Consensus 993 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~ 1072 (1205)
..+..+++|++|++++|.-...++. ...++|+.|++++| .++.++... ..+++|+.|++++ ++++
T Consensus 422 -~~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N-~l~~ip~~~-~~l~~L~~L~L~~-N~l~ 486 (562)
T 3a79_B 422 -RTCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNN-RIMSIPKDV-THLQALQELNVAS-NQLK 486 (562)
T ss_dssp -CCCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSS-CCCCCCTTT-TSSCCCSEEECCS-SCCC
T ss_pred -hhhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCC-cCcccChhh-cCCCCCCEEECCC-CCCC
Confidence 3456778888888888653222211 11268888888885 677777543 4788888888888 4566
Q ss_pred cccccccccccCCCCCCCCcccccccccccCcceeeeecccc
Q 000975 1073 RFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMR 1114 (1205)
Q Consensus 1073 ~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~ 1114 (1205)
.+|.. .+..+++|+.|++++++
T Consensus 487 ~l~~~--------------------~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 487 SVPDG--------------------VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCTT--------------------STTTCTTCCCEECCSCC
T ss_pred CCCHH--------------------HHhcCCCCCEEEecCCC
Confidence 66511 13456777777777764
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.7e-24 Score=253.32 Aligned_cols=163 Identities=18% Similarity=0.292 Sum_probs=120.7
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..+++.+++.++.+..+|....+++|++|++++|.+. .++. +.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 4578888888888888877557888888888888776 4444 5788888888888888887776 8888888888888
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
+|.+.....++++++|++|++++|.+..+| .++++++|++|++++ .+..+++ ++++++|++|++++|.+..++
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-- 193 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDIS-- 193 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCCh--
Confidence 888877545888888888888888887776 478888888888864 2444443 778888888888877654332
Q ss_pred CccchHhhccCCCCcEEEEe
Q 000975 671 SNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+++|+.|+++
T Consensus 194 ------~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 194 ------VLAKLTNLESLIAT 207 (466)
T ss_dssp ------GGGGCTTCSEEECC
T ss_pred ------hhccCCCCCEEEec
Confidence 34555555555443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.4e-24 Score=252.85 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=85.0
Q ss_pred cCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccc
Q 000975 945 FPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGRE 1024 (1205)
Q Consensus 945 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 1024 (1205)
+++|++|++++|.++.+.+ +. .+++|++|++++| +++.+++ +..+++|+.|++++|. ++++..
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~----~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~------ 326 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LA----GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP------ 326 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GT----TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG------
T ss_pred CCCCCEEECCCCccCcccc--cc----CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh------
Confidence 6778888888887776644 22 6788899999884 6777653 5678888888888864 443321
Q ss_pred cccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCc
Q 000975 1025 ENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPS 1104 (1205)
Q Consensus 1025 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 1104 (1205)
...+++|+.|++++| .++.++ .+..+++|+.|++++|+ ++.++ .+..+++
T Consensus 327 ----~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~-l~~~~----------------------~~~~l~~ 376 (466)
T 1o6v_A 327 ----VSSLTKLQRLFFYNN-KVSDVS--SLANLTNINWLSAGHNQ-ISDLT----------------------PLANLTR 376 (466)
T ss_dssp ----GGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-CCBCG----------------------GGTTCTT
T ss_pred ----hccCccCCEeECCCC-ccCCch--hhccCCCCCEEeCCCCc-cCccc----------------------hhhcCCC
Confidence 235788888888886 555553 46778888888888764 43333 1345677
Q ss_pred ceeeeecccc
Q 000975 1105 LEELSIALMR 1114 (1205)
Q Consensus 1105 L~~L~i~~c~ 1114 (1205)
|+.|++++|+
T Consensus 377 L~~L~l~~n~ 386 (466)
T 1o6v_A 377 ITQLGLNDQA 386 (466)
T ss_dssp CCEEECCCEE
T ss_pred CCEEeccCCc
Confidence 8888888774
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=7e-25 Score=257.33 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=68.0
Q ss_pred CCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCce-------------eEEEeeCCCCCCcccc
Q 000975 512 KNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTEL-------------LVLHLTGIHFPSLPLS 577 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~L-------------r~L~Ls~~~i~~lp~~ 577 (1205)
..++.+++++|.+..+|..+ ++++|++|++++|.+.+.+|..+ +.+.+| ++|++++|.++.+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 34566666666666666555 66666666666666655555543 444443 6666666666665542
Q ss_pred cCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCE
Q 000975 578 LGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNE 656 (1205)
Q Consensus 578 i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~ 656 (1205)
.++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++|. ++.+| . ++++++|++
T Consensus 90 ---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp ---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCE
T ss_pred ---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCCE
Confidence 2456666666666655 322 25666666666666655431 1456666666643 55555 2 666666666
Q ss_pred EEccCCcCc
Q 000975 657 LYMGNSFTR 665 (1205)
Q Consensus 657 L~l~~~~~~ 665 (1205)
|++++|.+.
T Consensus 158 L~l~~N~l~ 166 (454)
T 1jl5_A 158 IDVDNNSLK 166 (454)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCc
Confidence 666665544
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=257.95 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=112.5
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-Cc-ccccCCCcCCcEEEccCC
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SL-PLSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~l-p~~i~~L~~Lr~L~L~~~ 592 (1205)
+.++.+++.+..+|. -.++|++|++++|.+. .+++..|.++++|++|++++|.+. .+ |..|.++++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 456666777777777 3377888888888887 344445688888888888888876 44 456888888888888888
Q ss_pred cCCC--CccccccccCcEEEcccCCCCc-cchh--ccCCCccCEEeccCCCCCCccCh-hhhcCCCCCCEEEccCCcCcc
Q 000975 593 HLED--VARVGDLAKLEILSFRNSHIEQ-LPEQ--IGNLTRLKLLDLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 593 ~l~~--~~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~ 666 (1205)
.+.. |..|+++++|++|++++|.++. +|.. +.++++|++|++++|. +..+++ ..++++++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 8776 5778888888888888888874 3444 7888888888888865 555543 337788888888888887664
Q ss_pred cc
Q 000975 667 VE 668 (1205)
Q Consensus 667 ~~ 668 (1205)
..
T Consensus 169 ~~ 170 (455)
T 3v47_A 169 IC 170 (455)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=9.5e-24 Score=250.92 Aligned_cols=384 Identities=16% Similarity=0.181 Sum_probs=241.3
Q ss_pred EEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCcCCC---CccccccccCcEEEccc
Q 000975 538 LFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED---VARVGDLAKLEILSFRN 613 (1205)
Q Consensus 538 ~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~ 613 (1205)
.++..++.+. .+|. + .++|++|+|++|.++.+ |..|+++++|++|++++|.+.. +..|.++++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555554 6775 2 37899999999999876 6779999999999999998764 46789999999999999
Q ss_pred CCCCcc-chhccCCCccCEEeccCCCCCCcc-C-hhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 614 SHIEQL-PEQIGNLTRLKLLDLSNCSKLKVI-K-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 614 ~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~-~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
|.++.+ |..++++++|++|++++|. +... + ...++++++|++|++++|.+..+.. ...+..+++|+.|+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-----ASFFLNMRRFHVLDLT 162 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-----CGGGGGCTTCCEEECT
T ss_pred CccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCc-----ccccCCCCcccEEeCC
Confidence 998866 7778999999999999976 5542 2 2337889999999999887765432 0126677777777664
Q ss_pred cchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhcc
Q 000975 691 IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN 770 (1205)
Q Consensus 691 ~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 770 (1205)
+|.+... .......+
T Consensus 163 -----------------~n~l~~~----------------------------------------------~~~~l~~l-- 177 (455)
T 3v47_A 163 -----------------FNKVKSI----------------------------------------------CEEDLLNF-- 177 (455)
T ss_dssp -----------------TCCBSCC----------------------------------------------CTTTSGGG--
T ss_pred -----------------CCccccc----------------------------------------------Chhhhhcc--
Confidence 2221000 00000000
Q ss_pred CCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccc
Q 000975 771 GEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFP 850 (1205)
Q Consensus 771 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 850 (1205)
..++|+.|++++|. +..++. ..+ ....+. ....+++|+.|++++|. +....+
T Consensus 178 --~~~~L~~L~l~~n~-l~~~~~----~~~------~~~~~~--------------~~~~~~~L~~L~Ls~n~-l~~~~~ 229 (455)
T 3v47_A 178 --QGKHFTLLRLSSIT-LQDMNE----YWL------GWEKCG--------------NPFKNTSITTLDLSGNG-FKESMA 229 (455)
T ss_dssp --TTCEEEEEECTTCB-CTTCST----TCT------THHHHC--------------CTTTTCEEEEEECTTSC-CCHHHH
T ss_pred --ccccccccccccCc-ccccch----hhc------cccccc--------------cccccceeeeEecCCCc-ccccch
Confidence 12466777776663 111100 000 000000 00235677788887774 333323
Q ss_pred hHHHHH--cccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCccccc
Q 000975 851 SFMAEK--LLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITA 928 (1205)
Q Consensus 851 ~~~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~ 928 (1205)
..+... .++|+.|++++|......... ..++.+....+.
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~------------------------- 270 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGH--------------TNFKDPDNFTFK------------------------- 270 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTC--------------CSSCCCCTTTTG-------------------------
T ss_pred hhhhccccccceeeEeeccccccccccch--------------hhhccCcccccc-------------------------
Confidence 222221 277888888876543221100 111111111111
Q ss_pred CCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEc
Q 000975 929 EDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEIS 1008 (1205)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 1008 (1205)
....++|+.|++++|.++++.+..+. .+++|++|++++| .++.+++ ..+..+++|++|+++
T Consensus 271 -------------~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 271 -------------GLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLS 331 (455)
T ss_dssp -------------GGTTSCCCEEECCSSCCCEECTTTTT----TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred -------------cccccCceEEEecCccccccchhhcc----cCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECC
Confidence 11257788999999988887666654 7788999999884 6777644 346778899999998
Q ss_pred cccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCC
Q 000975 1009 QCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNY 1088 (1205)
Q Consensus 1009 ~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~ 1088 (1205)
+|. ++.+.. .....+++|+.|++++| .++.+....+..+++|++|++++ ++++.++.
T Consensus 332 ~N~-l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~------------ 388 (455)
T 3v47_A 332 QNF-LGSIDS--------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSVPD------------ 388 (455)
T ss_dssp SSC-CCEECG--------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCT------------
T ss_pred CCc-cCCcCh--------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccCCH------------
Confidence 864 444422 11234788999999985 66777666788889999999998 45666551
Q ss_pred CCCcccccccccccCcceeeeecccc
Q 000975 1089 HGDTQALFDEKVMLPSLEELSIALMR 1114 (1205)
Q Consensus 1089 ~~~~~~l~~~~~~l~~L~~L~i~~c~ 1114 (1205)
..+..+++|+.|++++|+
T Consensus 389 --------~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 389 --------GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp --------TTTTTCTTCCEEECCSSC
T ss_pred --------hHhccCCcccEEEccCCC
Confidence 122456778888887764
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=8e-24 Score=248.57 Aligned_cols=314 Identities=16% Similarity=0.167 Sum_probs=210.1
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..+++++++++|.+..+|....+++|++|++++|.+.+ +| +..+++|++|++++|.++.+| ++++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 56788999999988888755588899999999998874 54 578889999999999988875 8889999999999
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
+|.++..+ ++++++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+..++
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC--
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec--
Confidence 99888743 888899999999999888875 7888999999999887677663 778889999999888765432
Q ss_pred CccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhh
Q 000975 671 SNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (1205)
+..+++|+.|+++ +|.+... .+ ..+++|
T Consensus 187 -------l~~l~~L~~L~l~-----------------~N~l~~~---~l-------------------------~~l~~L 214 (457)
T 3bz5_A 187 -------VSQNKLLNRLNCD-----------------TNNITKL---DL-------------------------NQNIQL 214 (457)
T ss_dssp -------CTTCTTCCEEECC-----------------SSCCSCC---CC-------------------------TTCTTC
T ss_pred -------cccCCCCCEEECc-----------------CCcCCee---cc-------------------------ccCCCC
Confidence 4455666666554 3322100 00 012455
Q ss_pred chhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccccccccccc
Q 000975 751 EDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRS 830 (1205)
Q Consensus 751 ~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 830 (1205)
+.|+++++.... + + ...+++|+.|++++|. ++.+ ....+++|+.|.+.+
T Consensus 215 ~~L~Ls~N~l~~-i-p----~~~l~~L~~L~l~~N~-l~~~----~~~~l~~L~~L~l~~-------------------- 263 (457)
T 3bz5_A 215 TFLDCSSNKLTE-I-D----VTPLTQLTYFDCSVNP-LTEL----DVSTLSKLTTLHCIQ-------------------- 263 (457)
T ss_dssp SEEECCSSCCSC-C-C----CTTCTTCSEEECCSSC-CSCC----CCTTCTTCCEEECTT--------------------
T ss_pred CEEECcCCcccc-c-C----ccccCCCCEEEeeCCc-CCCc----CHHHCCCCCEEeccC--------------------
Confidence 556665543322 1 1 2566777777777763 2222 223445555544432
Q ss_pred CCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccc
Q 000975 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTS 910 (1205)
Q Consensus 831 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 910 (1205)
.+|+.|++++|..+..+|. ..+++|+.|++++|..+..++ ...++|+.|.+++
T Consensus 264 -n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~----------------~~~~~L~~L~l~~------ 316 (457)
T 3bz5_A 264 -TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLD----------------CQAAGITELDLSQ------ 316 (457)
T ss_dssp -CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEE----------------CTTCCCSCCCCTT------
T ss_pred -CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceec----------------cCCCcceEechhh------
Confidence 3466666666665555542 456667777776666554443 1123333333332
Q ss_pred cCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccc
Q 000975 911 SGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFL 990 (1205)
Q Consensus 911 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 990 (1205)
.++|++|++++|++++++ +. .+++|+.|++++ ++++.+
T Consensus 317 ----------------------------------~~~L~~L~L~~N~l~~l~---l~----~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 317 ----------------------------------NPKLVYLYLNNTELTELD---VS----HNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp ----------------------------------CTTCCEEECTTCCCSCCC---CT----TCTTCSEEECCS-SCCCBC
T ss_pred ----------------------------------cccCCEEECCCCcccccc---cc----cCCcCcEEECCC-CCCCCc
Confidence 466778888888877752 22 678888888887 566654
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.9e-24 Score=253.70 Aligned_cols=360 Identities=20% Similarity=0.188 Sum_probs=190.1
Q ss_pred cCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-CcccccCCCcCCcEEEccCCcCCCCccccccccCcEE
Q 000975 531 LQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEIL 609 (1205)
Q Consensus 531 ~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L 609 (1205)
...++|++|++++|.+ +.+|.++ +++++|++|++++|.+. .+|.+++++.+|+++++.+|. ..+|++|
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~---------~~~l~~L 76 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL---------DRQAHEL 76 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH---------HHTCSEE
T ss_pred cccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhh---------ccCCCEE
Confidence 3455666666666666 4666554 66666666666666665 566666666665333333332 1234666
Q ss_pred EcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEE
Q 000975 610 SFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (1205)
Q Consensus 610 ~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l 689 (1205)
++++|.++.+|.. .++|++|++++|. ++.+|.. +++|++|++++|.+..++. + .++|+.|++
T Consensus 77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~----~~~L~~L~l~~n~l~~l~~--------~--~~~L~~L~L 138 (454)
T 1jl5_A 77 ELNNLGLSSLPEL---PPHLESLVASCNS-LTELPEL----PQSLKSLLVDNNNLKALSD--------L--PPLLEYLGV 138 (454)
T ss_dssp ECTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSCCCS--------C--CTTCCEEEC
T ss_pred EecCCccccCCCC---cCCCCEEEccCCc-CCccccc----cCCCcEEECCCCccCcccC--------C--CCCCCEEEC
Confidence 6666666666542 3566666666643 4555431 3566666666654443221 0 022333222
Q ss_pred ecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhc
Q 000975 690 HIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELD 769 (1205)
Q Consensus 690 ~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 769 (1205)
++|.+. .+ +.+
T Consensus 139 -----------------~~n~l~--------------------------------------------------~l-p~~- 149 (454)
T 1jl5_A 139 -----------------SNNQLE--------------------------------------------------KL-PEL- 149 (454)
T ss_dssp -----------------CSSCCS--------------------------------------------------SC-CCC-
T ss_pred -----------------cCCCCC--------------------------------------------------CC-ccc-
Confidence 222210 00 011
Q ss_pred cCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCccccc
Q 000975 770 NGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLF 849 (1205)
Q Consensus 770 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 849 (1205)
+.+++|++|++++|. ++.++ ..+++|+.|++.++ .+..++ ..+.+++|+.|++++| .++.+|
T Consensus 150 --~~l~~L~~L~l~~N~-l~~lp-----~~~~~L~~L~L~~n-~l~~l~--------~~~~l~~L~~L~l~~N-~l~~l~ 211 (454)
T 1jl5_A 150 --QNSSFLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNN-QLEELP--------ELQNLPFLTAIYADNN-SLKKLP 211 (454)
T ss_dssp --TTCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSS-CCSSCC--------CCTTCTTCCEEECCSS-CCSSCC
T ss_pred --CCCCCCCEEECCCCc-CcccC-----CCcccccEEECcCC-cCCcCc--------cccCCCCCCEEECCCC-cCCcCC
Confidence 344555555555542 22221 11234555555443 222221 1156888999999888 466665
Q ss_pred chHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccC
Q 000975 850 PSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAE 929 (1205)
Q Consensus 850 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~ 929 (1205)
. ..++|++|++++|. +..++. +..+++|+.|+++++ +++.++.
T Consensus 212 ~-----~~~~L~~L~l~~n~-l~~lp~--------------~~~l~~L~~L~l~~N-~l~~l~~---------------- 254 (454)
T 1jl5_A 212 D-----LPLSLESIVAGNNI-LEELPE--------------LQNLPFLTTIYADNN-LLKTLPD---------------- 254 (454)
T ss_dssp C-----CCTTCCEEECCSSC-CSSCCC--------------CTTCTTCCEEECCSS-CCSSCCS----------------
T ss_pred C-----CcCcccEEECcCCc-CCcccc--------------cCCCCCCCEEECCCC-cCCcccc----------------
Confidence 4 23589999999874 334431 245778888888775 2433322
Q ss_pred CCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcc
Q 000975 930 DDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQ 1009 (1205)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 1009 (1205)
.+++|++|++++|.+++++. .+++|+.|++++| +++.++.. .++|+.|++++
T Consensus 255 --------------~~~~L~~L~l~~N~l~~l~~--------~~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~l~~ 306 (454)
T 1jl5_A 255 --------------LPPSLEALNVRDNYLTDLPE--------LPQSLTFLDVSEN-IFSGLSEL-----PPNLYYLNASS 306 (454)
T ss_dssp --------------CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCSEESCC-----CTTCCEEECCS
T ss_pred --------------cccccCEEECCCCcccccCc--------ccCcCCEEECcCC-ccCcccCc-----CCcCCEEECcC
Confidence 24788889998888776532 2368888998884 67765421 26888888877
Q ss_pred ccccccccccccccccccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccCCCCCC
Q 000975 1010 CASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSSGGNYH 1089 (1205)
Q Consensus 1010 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~ 1089 (1205)
| .++.+.. .+++|+.|++++ +.++.++. .+++|+.|++++| +++.+|
T Consensus 307 N-~l~~i~~------------~~~~L~~L~Ls~-N~l~~lp~----~~~~L~~L~L~~N-~l~~lp-------------- 353 (454)
T 1jl5_A 307 N-EIRSLCD------------LPPSLEELNVSN-NKLIELPA----LPPRLERLIASFN-HLAEVP-------------- 353 (454)
T ss_dssp S-CCSEECC------------CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSS-CCSCCC--------------
T ss_pred C-cCCcccC------------CcCcCCEEECCC-Cccccccc----cCCcCCEEECCCC-cccccc--------------
Confidence 5 3444321 246888888888 45665553 2588888888875 565555
Q ss_pred CCcccccccccccCcceeeeecccc
Q 000975 1090 GDTQALFDEKVMLPSLEELSIALMR 1114 (1205)
Q Consensus 1090 ~~~~~l~~~~~~l~~L~~L~i~~c~ 1114 (1205)
. .+++|++|++++|.
T Consensus 354 -------~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 354 -------E---LPQNLKQLHVEYNP 368 (454)
T ss_dssp -------C---CCTTCCEEECCSSC
T ss_pred -------c---hhhhccEEECCCCC
Confidence 1 35788888888873
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8.9e-23 Score=236.64 Aligned_cols=136 Identities=14% Similarity=0.283 Sum_probs=120.4
Q ss_pred CccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--Ccccccccc
Q 000975 529 DSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAK 605 (1205)
Q Consensus 529 ~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~ 605 (1205)
....+++++.|++.+|.+. .+|..+|..+++|++|++++|.+..+|. .|+.+++|++|+|++|.+.. +..++++++
T Consensus 40 ~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp SSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3447889999999999876 7899989999999999999999998864 79999999999999999988 467899999
Q ss_pred CcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcc
Q 000975 606 LEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 606 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~ 666 (1205)
|++|++++|.++.+|.. +.++++|++|++++|. +..+++..++++++|++|++++|.+..
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc
Confidence 99999999999999877 4899999999999965 778877779999999999999887653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.9e-23 Score=236.89 Aligned_cols=143 Identities=22% Similarity=0.384 Sum_probs=101.5
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEc
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSF 611 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L 611 (1205)
.+++|+.|+++++.+. .++. +..+++|++|++++|.++.+|. +.++++|++|++++|.+..++.+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5666777777777665 4443 5677788888888888777766 7788888888888887777667778888888888
Q ss_pred ccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEE
Q 000975 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (1205)
Q Consensus 612 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l 689 (1205)
++|.+..+|. +.++++|++|++++|..+..++. ++.+++|++|++++|.+..++ .+..+++|+.|++
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~--------~~~~l~~L~~L~l 184 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--------PIANLTDLYSLSL 184 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEEC
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCch--------hhccCCCCCEEEc
Confidence 8888777765 77788888888888765655543 777888888888777654332 1445555555544
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.3e-23 Score=244.65 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=95.0
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEc
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSF 611 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L 611 (1205)
++++|++|++++|.+. .+| . +..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 6788888888888877 355 2 578888888888888888875 788888888888888887743 788888888888
Q ss_pred ccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCc
Q 000975 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (1205)
Q Consensus 612 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 663 (1205)
++|.++.+| ++++++|++|++++|. ++.++ ++++++|++|++++|.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCS
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCC
Confidence 888888776 7888888888888865 66653 6778888888888773
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=240.14 Aligned_cols=314 Identities=21% Similarity=0.240 Sum_probs=218.9
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.+++.+..+|..+ .++++.|++++|.+. .++...|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 56777778888888755 357889999999887 45555678899999999999988876 6778899999999999998
Q ss_pred CCC-C-ccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 594 LED-V-ARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 594 l~~-~-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
++. + ..|+++++|++|++++|.+..+ |..+.++++|++|++++|. +..+++..++++++|++|++++|.+..++.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 169 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPT- 169 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCH-
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccCh-
Confidence 887 4 4678899999999999988866 5568889999999998865 777776668888999999988887665442
Q ss_pred CccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhh
Q 000975 671 SNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (1205)
..+..+++|+.|+++ +|.+.
T Consensus 170 -----~~l~~l~~L~~L~l~-----------------~n~i~-------------------------------------- 189 (477)
T 2id5_A 170 -----EALSHLHGLIVLRLR-----------------HLNIN-------------------------------------- 189 (477)
T ss_dssp -----HHHTTCTTCCEEEEE-----------------SCCCC--------------------------------------
T ss_pred -----hHhcccCCCcEEeCC-----------------CCcCc--------------------------------------
Confidence 446667777766655 11110
Q ss_pred chhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccccccccccc
Q 000975 751 EDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRS 830 (1205)
Q Consensus 751 ~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 830 (1205)
......+ ..+++|+.|++++|..+..++.. . ..
T Consensus 190 -----------~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~--------------------------~-------~~ 222 (477)
T 2id5_A 190 -----------AIRDYSF---KRLYRLKVLEISHWPYLDTMTPN--------------------------C-------LY 222 (477)
T ss_dssp -----------EECTTCS---CSCTTCCEEEEECCTTCCEECTT--------------------------T-------TT
T ss_pred -----------EeChhhc---ccCcccceeeCCCCccccccCcc--------------------------c-------cc
Confidence 0000112 56677888888877544433210 0 12
Q ss_pred CCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccc
Q 000975 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTS 910 (1205)
Q Consensus 831 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 910 (1205)
..+|+.|++++| .++.+++ ..+..+++|++|+++++. +..++..
T Consensus 223 ~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~--------------------------------- 266 (477)
T 2id5_A 223 GLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS--------------------------------- 266 (477)
T ss_dssp TCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT---------------------------------
T ss_pred CccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh---------------------------------
Confidence 347888888888 5666654 345778888888888864 2221100
Q ss_pred cCCCCCCCCCCCCcccccCCCccchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccc
Q 000975 911 SGFYLETPTTGGSEEITAEDDPQNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFL 990 (1205)
Q Consensus 911 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 990 (1205)
....+++|++|+|++|.++.+.+..+. .+++|+.|+|++ ++++.+
T Consensus 267 ------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~-N~l~~~ 311 (477)
T 2id5_A 267 ------------------------------MLHELLRLQEIQLVGGQLAVVEPYAFR----GLNYLRVLNVSG-NQLTTL 311 (477)
T ss_dssp ------------------------------SCTTCTTCCEEECCSSCCSEECTTTBT----TCTTCCEEECCS-SCCSCC
T ss_pred ------------------------------hccccccCCEEECCCCccceECHHHhc----CcccCCEEECCC-CcCcee
Confidence 012256677777777777777665554 677788888877 467776
Q ss_pred cchhhHHhhccccEEEEcccc
Q 000975 991 FSSSMVNSLKQLQRLEISQCA 1011 (1205)
Q Consensus 991 ~~~~~~~~l~~L~~L~l~~c~ 1011 (1205)
++ ..+..+++|+.|++++++
T Consensus 312 ~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 312 EE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CG-GGBSCGGGCCEEECCSSC
T ss_pred CH-hHcCCCcccCEEEccCCC
Confidence 43 445667778888877654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.2e-21 Score=223.58 Aligned_cols=166 Identities=19% Similarity=0.280 Sum_probs=142.5
Q ss_pred hcCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
..+++++++++++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 36789999999999999988669999999999999887 5655 799999999999999999986 5999999999999
Q ss_pred cCCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 590 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
++|.+.....+.++++|++|++++|.....+..+.++++|++|++++|. +..+++ ++.+++|++|++++|.+..++
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~- 193 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDIS- 193 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCG-
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccccc-
Confidence 9999998555999999999999999555444469999999999999976 666655 889999999999999776543
Q ss_pred CCccchHhhccCCCCcEEEEe
Q 000975 670 QSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+++|+.|+++
T Consensus 194 -------~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 194 -------PLASLTSLHYFTAY 207 (347)
T ss_dssp -------GGGGCTTCCEEECC
T ss_pred -------cccCCCccceeecc
Confidence 26677777777665
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7e-22 Score=241.94 Aligned_cols=304 Identities=16% Similarity=0.213 Sum_probs=219.7
Q ss_pred ccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccC
Q 000975 530 SLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKL 606 (1205)
Q Consensus 530 ~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L 606 (1205)
...+++++.+++.+|.+. .+|..+|.++++|++|+|++|.+..+|. .|+.+++|++|+|++|.+.. +..|+++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 346788899999888876 7888888999999999999999987754 78999999999999999887 4567899999
Q ss_pred cEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCc
Q 000975 607 EILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLT 685 (1205)
Q Consensus 607 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~ 685 (1205)
++|+|++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+..++ +..+++|+
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~ 195 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLF 195 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhh
Confidence 9999999999988876 4889999999999865 77777777889999999999988766432 55677788
Q ss_pred EEEEecc--hhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchh
Q 000975 686 ILDMHIP--DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQN 763 (1205)
Q Consensus 686 ~L~l~~~--~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 763 (1205)
.|+++.. .....+..|..+++++|.+.... ... .++|+.|+++++....
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~-------------------------~~~---~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVR-------------------------GPV---NVELTILKLQHNNLTD- 246 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEE-------------------------CSC---CSCCCEEECCSSCCCC-
T ss_pred hhhcccCccccccCCchhheeeccCCcccccc-------------------------ccc---CCCCCEEECCCCCCCC-
Confidence 8877632 12234456677777776652111 000 2456667776654332
Q ss_pred hhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCC
Q 000975 764 IVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCH 843 (1205)
Q Consensus 764 ~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 843 (1205)
...+ ..+++|+.|++++|. +..+... ....+++|+.|+++++ .+..++.. ...+|+|+.|++++|
T Consensus 247 -~~~l---~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~-------~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 247 -TAWL---LNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALNLY-------GQPIPTLKVLDLSHN- 311 (597)
T ss_dssp -CGGG---GGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECTTS-CCCEEECS-------SSCCTTCCEEECCSS-
T ss_pred -Chhh---ccCCCCCEEECCCCc-cCCCCHH-HhcCccCCCEEECCCC-CCCCCCcc-------cccCCCCcEEECCCC-
Confidence 1333 677888888888884 3333211 2345778888888773 34443211 156899999999998
Q ss_pred CcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCC
Q 000975 844 RLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLP 906 (1205)
Q Consensus 844 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 906 (1205)
.+..+|+ .+..+++|+.|++++|.. ..++ +..+++|+.|++++++
T Consensus 312 ~l~~i~~--~~~~l~~L~~L~L~~N~l-~~~~---------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLLHVER--NQPQFDRLENLYLDHNSI-VTLK---------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCGG--GHHHHTTCSEEECCSSCC-CCCC---------------CCTTCCCSEEECCSSC
T ss_pred CCCccCc--ccccCCCCCEEECCCCCC-CCcC---------------hhhcCCCCEEEeeCCC
Confidence 5667765 357899999999999763 2221 2567889999988865
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.4e-21 Score=231.35 Aligned_cols=314 Identities=19% Similarity=0.236 Sum_probs=220.5
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~ 613 (1205)
+.++.+++.+. .+|..+ .+++++|+|++|.++.+ |..|.++++|++|+|++|.+.. |..|+++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 46677766665 677755 46889999999999977 5679999999999999999887 67899999999999999
Q ss_pred CCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecc
Q 000975 614 SHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP 692 (1205)
Q Consensus 614 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~ 692 (1205)
|.++.+|.. +.++++|++|++++|. +..+++..+.++++|++|++++|.+..+.. ..+..+++|+.|+++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~-- 160 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISH------RAFSGLNSLEQLTLE-- 160 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECT------TSSTTCTTCCEEEEE--
T ss_pred CcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeCh------hhccCCCCCCEEECC--
Confidence 999988765 6889999999999965 777766678999999999998887664432 345566666666654
Q ss_pred hhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhccCC
Q 000975 693 DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGE 772 (1205)
Q Consensus 693 ~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 772 (1205)
+|.+ .......+ .
T Consensus 161 ---------------~n~l-------------------------------------------------~~~~~~~l---~ 173 (477)
T 2id5_A 161 ---------------KCNL-------------------------------------------------TSIPTEAL---S 173 (477)
T ss_dssp ---------------SCCC-------------------------------------------------SSCCHHHH---T
T ss_pred ---------------CCcC-------------------------------------------------cccChhHh---c
Confidence 1111 00011223 5
Q ss_pred CccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcccccchH
Q 000975 773 GFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSF 852 (1205)
Q Consensus 773 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 852 (1205)
.+++|+.|++++|. +..++. ..+ ..+++|+.|++++|+.+..+++.
T Consensus 174 ~l~~L~~L~l~~n~-i~~~~~--------------------------~~~------~~l~~L~~L~l~~~~~~~~~~~~- 219 (477)
T 2id5_A 174 HLHGLIVLRLRHLN-INAIRD--------------------------YSF------KRLYRLKVLEISHWPYLDTMTPN- 219 (477)
T ss_dssp TCTTCCEEEEESCC-CCEECT--------------------------TCS------CSCTTCCEEEEECCTTCCEECTT-
T ss_pred ccCCCcEEeCCCCc-CcEeCh--------------------------hhc------ccCcccceeeCCCCccccccCcc-
Confidence 67888999988873 222210 001 45678888888888777776653
Q ss_pred HHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccccCCCCCCCCCCCCcccccCCCc
Q 000975 853 MAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGGSEEITAEDDP 932 (1205)
Q Consensus 853 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 932 (1205)
.....+|++|++++|. +..+ +.
T Consensus 220 -~~~~~~L~~L~l~~n~-l~~~-------------------------------------~~------------------- 241 (477)
T 2id5_A 220 -CLYGLNLTSLSITHCN-LTAV-------------------------------------PY------------------- 241 (477)
T ss_dssp -TTTTCCCSEEEEESSC-CCSC-------------------------------------CH-------------------
T ss_pred -cccCccccEEECcCCc-cccc-------------------------------------CH-------------------
Confidence 2234477777777752 1111 10
Q ss_pred cchhhhcccccccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccc
Q 000975 933 QNLLAFFNKKVVFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCAS 1012 (1205)
Q Consensus 933 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 1012 (1205)
.....+++|+.|+|++|.++.+....+. .+++|++|+|++ ++++.+++ ..+..+++|+.|++++| .
T Consensus 242 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 242 -------LAVRHLVYLRFLNLSYNPISTIEGSMLH----ELLRLQEIQLVG-GQLAVVEP-YAFRGLNYLRVLNVSGN-Q 307 (477)
T ss_dssp -------HHHTTCTTCCEEECCSSCCCEECTTSCT----TCTTCCEEECCS-SCCSEECT-TTBTTCTTCCEEECCSS-C
T ss_pred -------HHhcCccccCeeECCCCcCCccChhhcc----ccccCCEEECCC-CccceECH-HHhcCcccCCEEECCCC-c
Confidence 0012367889999999988888776665 788999999998 47777744 45678889999999885 4
Q ss_pred cccccccccccccccccccccccceeccccCC
Q 000975 1013 MQGIIDTGLGREENLIEMVFPKLVYLSLSHLP 1044 (1205)
Q Consensus 1013 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 1044 (1205)
++.++. .....+++|+.|++++++
T Consensus 308 l~~~~~--------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 LTTLEE--------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSCCCG--------GGBSCGGGCCEEECCSSC
T ss_pred CceeCH--------hHcCCCcccCEEEccCCC
Confidence 555532 112347788888888754
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=4.2e-21 Score=222.49 Aligned_cols=301 Identities=18% Similarity=0.177 Sum_probs=212.9
Q ss_pred cCCCcEEEccCCCCCCCCCcc--CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEE
Q 000975 511 RKNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTL 587 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~--~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L 587 (1205)
..+++++++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|++++|.+..+| ..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999864 8999999999999987 566666799999999999999999885 558999999999
Q ss_pred EccCCcCCC-Cc-cccccccCcEEEcccCCCCccc-hhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcC
Q 000975 588 SFDCCHLED-VA-RVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 588 ~L~~~~l~~-~~-~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
++++|.+.. |. .++++++|++|++++|.++.++ ..+.++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 999999998 54 4699999999999999999875 458999999999999965 77764 56789999999998865
Q ss_pred ccccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHH
Q 000975 665 RKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIK 744 (1205)
Q Consensus 665 ~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~ 744 (1205)
..+ ....+|+.|+++ +|.+..... ..
T Consensus 199 ~~~-----------~~~~~L~~L~l~-----------------~n~l~~~~~----~~---------------------- 224 (390)
T 3o6n_A 199 STL-----------AIPIAVEELDAS-----------------HNSINVVRG----PV---------------------- 224 (390)
T ss_dssp SEE-----------ECCSSCSEEECC-----------------SSCCCEEEC----CC----------------------
T ss_pred ccc-----------CCCCcceEEECC-----------------CCeeeeccc----cc----------------------
Confidence 532 233455555554 333211000 00
Q ss_pred HHhhhhchhhcccccCchhhhhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceecccccc
Q 000975 745 KLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQL 824 (1205)
Q Consensus 745 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 824 (1205)
+++|+.|++.++.... . ..+ ..+++|++|++++|. +..+.. .....+++|+.|++.++ .+..+...
T Consensus 225 --~~~L~~L~l~~n~l~~-~-~~l---~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~---- 290 (390)
T 3o6n_A 225 --NVELTILKLQHNNLTD-T-AWL---LNYPGLVEVDLSYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALNLY---- 290 (390)
T ss_dssp --CSSCCEEECCSSCCCC-C-GGG---GGCTTCSEEECCSSC-CCEEES-GGGTTCSSCCEEECCSS-CCCEEECS----
T ss_pred --cccccEEECCCCCCcc-c-HHH---cCCCCccEEECCCCc-CCCcCh-hHccccccCCEEECCCC-cCcccCcc----
Confidence 1344445554443221 1 222 556777777777763 333211 12334666777777663 33333211
Q ss_pred ccccccCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccC
Q 000975 825 TEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRR 904 (1205)
Q Consensus 825 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 904 (1205)
...+++|+.|++++| .++.+|+ .+..+++|++|++++|.. ..++ +..+++|+.|++++
T Consensus 291 ---~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~i-~~~~---------------~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 291 ---GQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNSI-VTLK---------------LSTHHTLKNLTLSH 348 (390)
T ss_dssp ---SSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSCC-CCCC---------------CCTTCCCSEEECCS
T ss_pred ---cCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCcc-ceeC---------------chhhccCCEEEcCC
Confidence 145788888888888 5667765 356788899999888752 2221 25577888888877
Q ss_pred CC
Q 000975 905 LP 906 (1205)
Q Consensus 905 ~~ 906 (1205)
++
T Consensus 349 N~ 350 (390)
T 3o6n_A 349 ND 350 (390)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.2e-20 Score=228.64 Aligned_cols=127 Identities=18% Similarity=0.271 Sum_probs=109.7
Q ss_pred CCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccCCCCccch-hccCCCccCEE
Q 000975 557 GMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLL 632 (1205)
Q Consensus 557 ~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 632 (1205)
.+.++++|++++|.+..+|.. +.++++|++|+|++|.+.. +..|+++++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999999876 7889999999999999988 4689999999999999999998865 47999999999
Q ss_pred eccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 633 DLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 633 ~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+|++|. +..+|+..++++++|++|++++|.+..++. ..+..+++|+.|+++
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIED------DTFQATTSLQNLQLS 179 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT------TTTTTCTTCCEEECT
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCCh------hhhhcCCcCcEEECc
Confidence 999975 889998878999999999999998775543 346677777776654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.4e-19 Score=204.48 Aligned_cols=124 Identities=18% Similarity=0.260 Sum_probs=103.7
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcEEEc
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSF 611 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L 611 (1205)
+++.++++++.+. .+|..+ .++|++|++++|.+..++ ..|+++++|++|++++|.++. |..|+++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6888888888876 777755 468899999999988774 578999999999999998887 578889999999999
Q ss_pred ccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 612 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++|.++.+|..+. ++|++|++++|. +..+++..++++++|++|++++|.+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccc
Confidence 9999988887765 789999999865 77888777889999999999888664
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.8e-20 Score=230.89 Aligned_cols=165 Identities=13% Similarity=0.052 Sum_probs=82.0
Q ss_pred cCCCccEEEecccCCcccccchhhHHhhccccEEEEcc---ccccccccccccccccccccccccccceeccccCCC-cc
Q 000975 972 SSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQ---CASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQ-LS 1047 (1205)
Q Consensus 972 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~---c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-L~ 1047 (1205)
.+++|++|++ +|++++..........+++|++|++++ |+.+++.+... .-......+++|+.|+++.|.+ ++
T Consensus 376 ~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~---~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 376 GCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN---GVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH---HHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred hCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH---HHHHHHHhCCCCCEEEEecCCCCcc
Confidence 4677888887 556776543333334477788887763 45555432100 0001123467777777766553 33
Q ss_pred ccCCCcc-cCCCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchh--hccCCC
Q 000975 1048 RFGIGNL-VELPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRK--IWHHQL 1124 (1205)
Q Consensus 1048 ~~~~~~l-~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~--l~~~~~ 1124 (1205)
......+ ..+++|++|++++|. ++... ++.....+++|++|+|++|+ ++. ++..
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-------------------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-- 508 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVG-ESDEG-------------------LMEFSRGCPNLQKLEMRGCC-FSERAIAAA-- 508 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCC-SSHHH-------------------HHHHHTCCTTCCEEEEESCC-CBHHHHHHH--
T ss_pred HHHHHHHHHhCccceEeeccCCC-CCHHH-------------------HHHHHhcCcccCeeeccCCC-CcHHHHHHH--
Confidence 2221122 236677777777654 32211 00112345667777777775 321 1111
Q ss_pred CCCcccCccEEEecccccccccccchhHhhccCCcEEEEec
Q 000975 1125 ASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIE 1165 (1205)
Q Consensus 1125 ~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~ 1165 (1205)
...+++|++|++++|+ ++..-...+.+.+|.|....|..
T Consensus 509 -~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 509 -VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp -HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred -HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 1235677777777766 44321222334455555555544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.6e-19 Score=202.32 Aligned_cols=150 Identities=17% Similarity=0.306 Sum_probs=128.4
Q ss_pred CCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~ 591 (1205)
.++.++++++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4788999999999998765 478999999999987 56666679999999999999999977 77899999999999999
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCc--cChhhhcCCCCCCEEEccCCcCccc
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKV 667 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~~ 667 (1205)
|.+.. |..+. ++|++|++++|.++.+|.. +.++++|++|++++|. ++. ..+..++.+ +|++|++++|.+..+
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 99988 65555 8999999999999988764 8999999999999976 542 445557777 999999999987765
Q ss_pred c
Q 000975 668 E 668 (1205)
Q Consensus 668 ~ 668 (1205)
+
T Consensus 188 ~ 188 (332)
T 2ft3_A 188 P 188 (332)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1e-20 Score=233.10 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=64.3
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCc-eeEEEeeCCC-CC--CcccccCCCcCCcEEEccCCcCCCC------cccc
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTE-LLVLHLTGIH-FP--SLPLSLGSLINLRTLSFDCCHLEDV------ARVG 601 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~-Lr~L~Ls~~~-i~--~lp~~i~~L~~Lr~L~L~~~~l~~~------~~i~ 601 (1205)
.+++|++|++++|.+....+..+...++. |++|+|++|. +. .++..+.++++|++|+|++|.+.+. ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 35566666666665443222222121233 6666666654 11 2222233556666666666654331 1234
Q ss_pred ccccCcEEEcccCCCC-----ccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 602 DLAKLEILSFRNSHIE-----QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 602 ~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
++++|++|++++|.+. .++..+.++++|++|++++|. +..++. .++++++|++|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~-~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVG-FFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHH-HHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHH-HHhhhhHHHhhcccc
Confidence 4566666666666554 233334555666666666643 444442 355666666666553
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7.9e-19 Score=198.19 Aligned_cols=145 Identities=16% Similarity=0.263 Sum_probs=96.7
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcEEEc
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSF 611 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L 611 (1205)
+++.++++++.+. .+|..+ .+.|++|++++|.++.+|. .|+++++|++|+|++|.++. |..|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5667777766665 566543 3567777777777777654 57777777777777777766 567777777777777
Q ss_pred ccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 612 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
++|.++.+|..+. ++|++|++++|. +..+++..++++++|++|++++|.+.... .....+..+++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG----IENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG----BCTTGGGGCTTCCEEECC
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccC----cChhhccCCCCcCEEECC
Confidence 7777777776554 677777777754 66777666777777888877777654211 111345555555555543
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=7.2e-19 Score=198.52 Aligned_cols=151 Identities=15% Similarity=0.275 Sum_probs=128.5
Q ss_pred CCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~ 591 (1205)
.++.++++++.+..+|... .++++.|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5688899999998888755 368999999999987 56766679999999999999999987 78899999999999999
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCc--cChhhhcCCCCCCEEEccCCcCccc
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKV 667 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~~ 667 (1205)
|.++. |..+. ++|++|++++|.++.++. .+.++++|++|++++|. +.. ..+..++++++|++|++++|.+..+
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC
Confidence 99887 65554 799999999999998865 48999999999999976 542 4455689999999999999987765
Q ss_pred c
Q 000975 668 E 668 (1205)
Q Consensus 668 ~ 668 (1205)
+
T Consensus 187 ~ 187 (330)
T 1xku_A 187 P 187 (330)
T ss_dssp C
T ss_pred C
Confidence 5
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2.7e-19 Score=200.76 Aligned_cols=129 Identities=23% Similarity=0.302 Sum_probs=73.9
Q ss_pred CCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEc
Q 000975 533 CTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSF 611 (1205)
Q Consensus 533 ~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L 611 (1205)
.++++.|++++|.+. .+|..+ .++++|++|+|++|.+..+|..++++++|++|+|++|.++. |..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 355666666666655 555554 34666666666666666666666666666666666666555 555666666666666
Q ss_pred ccCC-CCccchhccC---------CCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 612 RNSH-IEQLPEQIGN---------LTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 612 ~~~~-l~~lp~~i~~---------L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++|+ +..+|..++. +++|++|++++|. ++.+|.. ++++++|++|++++|.+.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG-GGGCTTCCEEEEESSCCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh-hcCCCCCCEEEccCCCCC
Confidence 6643 3355554433 5555555555543 4455443 555555555555555444
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=5.4e-19 Score=198.25 Aligned_cols=170 Identities=24% Similarity=0.339 Sum_probs=145.3
Q ss_pred cCCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
..+++.|+++++.+..+|..+ ++++|++|++++|.+. .+|..+ .++++|++|+|++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468999999999999999876 8999999999999998 888765 8999999999999999999999999999999999
Q ss_pred cCCcCCC--Ccccc---------ccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEE
Q 000975 590 DCCHLED--VARVG---------DLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELY 658 (1205)
Q Consensus 590 ~~~~l~~--~~~i~---------~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~ 658 (1205)
++|.+.. |..++ ++++|++|++++|.++.+|..++++++|++|++++|. +..+|+. ++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 9987544 66555 4999999999999999999999999999999999976 7788876 99999999999
Q ss_pred ccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 659 MGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 659 l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+++|....... ..+..+++|+.|+++
T Consensus 236 Ls~n~~~~~~p------~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 236 LRGCTALRNYP------PIFGGRAPLKRLILK 261 (328)
T ss_dssp CTTCTTCCBCC------CCTTCCCCCCEEECT
T ss_pred CcCCcchhhhH------HHhcCCCCCCEEECC
Confidence 99876542211 245555666655543
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=8.2e-20 Score=225.20 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=100.5
Q ss_pred cCCCccEEEecccCCcccccchhhHHhhccccEEEEc-----ccccccccccccccccc-ccccccccccceeccccCCC
Q 000975 972 SSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEIS-----QCASMQGIIDTGLGREE-NLIEMVFPKLVYLSLSHLPQ 1045 (1205)
Q Consensus 972 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~-----~c~~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~ 1045 (1205)
.+++|++|.+ +|++++..........+++|+.|+++ +|+.++..+. ..+ ......+++|+.|++++ +
T Consensus 370 ~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~L~~L~L~~--~ 442 (594)
T 2p1m_B 370 GCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL----DIGFGAIVEHCKDLRRLSLSG--L 442 (594)
T ss_dssp HCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT----HHHHHHHHHHCTTCCEEECCS--S
T ss_pred hchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch----hhHHHHHHhhCCCccEEeecC--c
Confidence 4688999955 66788765444444568999999998 6777764421 000 01234578999999976 5
Q ss_pred ccccCCCcccC-CCCcceeeeccCcccccccccccccccCCCCCCCCcccccccccccCcceeeeecccccchhhccCCC
Q 000975 1046 LSRFGIGNLVE-LPSLRQLSINFCPELKRFICAHAVEMSSGGNYHGDTQALFDEKVMLPSLEELSIALMRNLRKIWHHQL 1124 (1205)
Q Consensus 1046 L~~~~~~~l~~-l~~L~~L~i~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 1124 (1205)
+++.....+.. +++|+.|++++|. ++..... .-...+++|++|+|++|+. +.......
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~-------------------~l~~~~~~L~~L~L~~n~~-~~~~~~~~ 501 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH-------------------HVLSGCDSLRKLEIRDCPF-GDKALLAN 501 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH-------------------HHHHHCTTCCEEEEESCSC-CHHHHHHT
T ss_pred ccHHHHHHHHHhchhccEeeccCCC-CcHHHHH-------------------HHHhcCCCcCEEECcCCCC-cHHHHHHH
Confidence 55443333443 7899999999876 3321100 0113478999999999974 32211111
Q ss_pred CCCcccCccEEEecccccccccccchhHhhccCCcEEEEec
Q 000975 1125 ASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIE 1165 (1205)
Q Consensus 1125 ~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~ 1165 (1205)
...+++|+.|++++|+.-.. ....+...++.|+...+..
T Consensus 502 -~~~l~~L~~L~l~~~~~~~~-~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 502 -ASKLETMRSLWMSSCSVSFG-ACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp -GGGGGGSSEEEEESSCCBHH-HHHHHHHHCTTEEEEEECS
T ss_pred -HHhCCCCCEEeeeCCCCCHH-HHHHHHHhCCCCEEEEecC
Confidence 13468999999999976222 2222335667776655543
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=3.6e-19 Score=198.52 Aligned_cols=170 Identities=17% Similarity=0.257 Sum_probs=114.7
Q ss_pred CCCcEEEccCCCCC---CCCCcc-CCCcceEEEeec-CCCCCCCChhhhhCCCceeEEEeeCCCCC-CcccccCCCcCCc
Q 000975 512 KNPTAISIPFRDIS---ELPDSL-QCTRLKLFLLFT-EDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLR 585 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~---~l~~~~-~~~~Lr~L~l~~-n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr 585 (1205)
.++++++++++.+. .+|..+ ++++|++|++++ |.+.+.+|..+ .++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35677777777775 366555 777777777774 77766666654 67777777777777776 6677777777777
Q ss_pred EEEccCCcCCC--CccccccccCcEEEcccCCCC-ccchhccCCC-ccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLT-RLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 586 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
+|++++|.+.. |..++++++|++|++++|.++ .+|..+++++ +|++|++++|. +....+..++.+. |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCc-ccEEECcC
Confidence 77777777763 667777777777777777777 6777777776 77777777755 4432233366666 77777777
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
|.+..... ..+..+++|+.|+++
T Consensus 207 N~l~~~~~------~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 207 NMLEGDAS------VLFGSDKNTQKIHLA 229 (313)
T ss_dssp SEEEECCG------GGCCTTSCCSEEECC
T ss_pred CcccCcCC------HHHhcCCCCCEEECC
Confidence 75543221 344555555555443
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=6.6e-18 Score=203.72 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=96.1
Q ss_pred CCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccC
Q 000975 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 591 (1205)
.+++.++++++.+..+|..+. ++|+.|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 357888888888888887554 77888888888776 5665 46778888888888877776 667788888888
Q ss_pred CcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 592 CHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 592 ~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
|.++..+. .+.+|++|++++|+++.+|.. +++|++|++++|. ++.+|. .+.+|+.|++++|.+.
T Consensus 111 N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 111 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS
T ss_pred CcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC
Confidence 87777322 567777788877777777753 4777777777754 665553 2456677777666544
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=4.4e-20 Score=227.61 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred ccCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcccccccccccccccc
Q 000975 944 VFPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGR 1023 (1205)
Q Consensus 944 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 1023 (1205)
.+++|+.|+|++ +++......+. ..+++|+.|+|++| .+++.........+++|++|+|++|+. ++...
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~---~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~----- 498 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIG---TYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL----- 498 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHH---HHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH-----
T ss_pred hCCCccEEeecC-cccHHHHHHHH---HhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH-----
Confidence 356677777755 33322111110 12567778888775 354432223335577788888877764 22211
Q ss_pred ccccccccccccceeccccCCC
Q 000975 1024 EENLIEMVFPKLVYLSLSHLPQ 1045 (1205)
Q Consensus 1024 ~~~~~~~~~~~L~~L~l~~c~~ 1045 (1205)
......+++|+.|++++|+.
T Consensus 499 --~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 --LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp --HHTGGGGGGSSEEEEESSCC
T ss_pred --HHHHHhCCCCCEEeeeCCCC
Confidence 01123467788888888765
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=201.69 Aligned_cols=168 Identities=22% Similarity=0.252 Sum_probs=133.4
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
...+.+++.+..+|.... ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 346777888888887543 58899999998887 56766678899999999999998877 4568899999999999999
Q ss_pred CCC-Cc-cccccccCcEEEcccCCCCccch--hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 594 LED-VA-RVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 594 l~~-~~-~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
++. +. .++++++|++|++++|.++.+|. .+.++++|++|++++|..+..+++..++++++|++|++++|.+.....
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 887 43 48889999999999999888886 688899999999998766888877778889999999998887654422
Q ss_pred CCccchHhhccCCCCcEEEEe
Q 000975 670 QSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
..+..+++|+.|+++
T Consensus 192 ------~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 192 ------KSLKSIQNVSHLILH 206 (353)
T ss_dssp ------TTTTTCSEEEEEEEE
T ss_pred ------HHHhccccCCeecCC
Confidence 455666666666665
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.2e-18 Score=194.20 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=180.1
Q ss_pred CcceEEEeecCCCCC--CCChhhhhCCCceeEEEeeC-CCCC-CcccccCCCcCCcEEEccCCcCCC--CccccccccCc
Q 000975 534 TRLKLFLLFTEDSSL--QIPNQFFDGMTELLVLHLTG-IHFP-SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLE 607 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~~--~~~~~~~~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~ 607 (1205)
.+++.|++++|.+.+ .+|..+ .++++|++|++++ |.+. .+|..|+++++|++|+|++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 589999999999987 788754 8899999999995 7776 789999999999999999999874 78899999999
Q ss_pred EEEcccCCCC-ccchhccCCCccCEEeccCCCCCC-ccChhhhcCCC-CCCEEEccCCcCccccCCCccchHhhccCCCC
Q 000975 608 ILSFRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLK-VIKPEVISRLS-RLNELYMGNSFTRKVEGQSNASVVELKQLSSL 684 (1205)
Q Consensus 608 ~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~-~~~~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L 684 (1205)
+|++++|.+. .+|..+.++++|++|++++|. +. .+|.. +++++ +|++|++++|.+..... ..+..++ |
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~------~~~~~l~-L 199 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP------PTFANLN-L 199 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEEEECC------GGGGGCC-C
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeeeccCC------hHHhCCc-c
Confidence 9999999998 789999999999999999976 55 56655 88888 99999999886652111 2333333 4
Q ss_pred cEEEEecchhhhccccccccccccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhh
Q 000975 685 TILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNI 764 (1205)
Q Consensus 685 ~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 764 (1205)
+.| ++++|.+.. ..
T Consensus 200 ~~L-----------------~Ls~N~l~~-------------------------------------------------~~ 213 (313)
T 1ogq_A 200 AFV-----------------DLSRNMLEG-------------------------------------------------DA 213 (313)
T ss_dssp SEE-----------------ECCSSEEEE-------------------------------------------------CC
T ss_pred cEE-----------------ECcCCcccC-------------------------------------------------cC
Confidence 444 444444310 11
Q ss_pred hhhhccCCCccccceEEeecCCceeEeecCCCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCC
Q 000975 765 VQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHR 844 (1205)
Q Consensus 765 ~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 844 (1205)
...+ ..+++|+.|++++|. +... .+. ...+++|++|++++|.
T Consensus 214 ~~~~---~~l~~L~~L~L~~N~-l~~~--------~~~-------------------------~~~l~~L~~L~Ls~N~- 255 (313)
T 1ogq_A 214 SVLF---GSDKNTQKIHLAKNS-LAFD--------LGK-------------------------VGLSKNLNGLDLRNNR- 255 (313)
T ss_dssp GGGC---CTTSCCSEEECCSSE-ECCB--------GGG-------------------------CCCCTTCCEEECCSSC-
T ss_pred CHHH---hcCCCCCEEECCCCc-eeee--------cCc-------------------------ccccCCCCEEECcCCc-
Confidence 1223 567888888888873 1110 000 0346788888888874
Q ss_pred cc-cccchHHHHHcccCcEEEeccccchhhhhcccCCCCcccCCccceeeccccchhhccCCCcccc
Q 000975 845 LK-HLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTS 910 (1205)
Q Consensus 845 l~-~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 910 (1205)
++ .+|. .+..+++|++|++++|.....++.. ..+++|+.+++.+.+.+..
T Consensus 256 l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~--------------~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 256 IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG--------------GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS--------------TTGGGSCGGGTCSSSEEES
T ss_pred ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC--------------ccccccChHHhcCCCCccC
Confidence 44 4443 3567888888888887654444421 4578888888888876654
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=8.1e-18 Score=202.97 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=82.2
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEcccC
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNS 614 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~ 614 (1205)
++++|++++|.+. .+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++..+. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 4777888877776 6776552 677888888888877776 56778888888887776322 6677888888888
Q ss_pred CCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcc
Q 000975 615 HIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 615 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~ 666 (1205)
.++.+|. .+++|++|++++|. ++.+|.. +++|++|++++|.+..
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC
T ss_pred cCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC
Confidence 7777775 56777788887754 6666642 4777777777775543
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=5.7e-20 Score=218.78 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=112.8
Q ss_pred CcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-----CcccccCCCcCCcEEEccCCcCCC--Cccc-cccc-
Q 000975 534 TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-----SLPLSLGSLINLRTLSFDCCHLED--VARV-GDLA- 604 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i-~~L~- 604 (1205)
++|+.|++++|.+.......++..+++|++|++++|.+. .++..+..+++|++|+|++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 578899999888764444555788999999999999988 467788899999999999999876 3333 3355
Q ss_pred ---cCcEEEcccCCCC-----ccchhccCCCccCEEeccCCCCCCccChhh-----hcCCCCCCEEEccCCcCccccCCC
Q 000975 605 ---KLEILSFRNSHIE-----QLPEQIGNLTRLKLLDLSNCSKLKVIKPEV-----ISRLSRLNELYMGNSFTRKVEGQS 671 (1205)
Q Consensus 605 ---~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~-----l~~L~~L~~L~l~~~~~~~~~~~~ 671 (1205)
+|++|++++|.++ .+|..+.++++|++|++++|. +....... ....++|++|++++|.+.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 6999999999888 468889999999999999976 55432221 2236689999999886653210
Q ss_pred ccchHhhccCCCCcEEEEe
Q 000975 672 NASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 672 ~~~l~~L~~L~~L~~L~l~ 690 (1205)
......+..+++|+.|+++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp HHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHhhCCCCCEEECc
Confidence 1112345566777777665
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=199.21 Aligned_cols=167 Identities=26% Similarity=0.345 Sum_probs=141.7
Q ss_pred CcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCC
Q 000975 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~ 592 (1205)
.+.++..+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4577788888888887654 68999999999987 566566799999999999999999775 66999999999999999
Q ss_pred cCCC-C-ccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 593 HLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 593 ~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
.++. + ..|.++++|++|++++|.++.+|. .+.++++|++|++++|+.+..+++..+.++++|++|++++|.+..++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 9988 3 579999999999999999998865 58899999999999988899998888999999999999999877654
Q ss_pred CCccchHhhccCCCCcEEEEe
Q 000975 670 QSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+++|+.|+++
T Consensus 202 -------~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 202 -------NLTPLIKLDELDLS 215 (440)
T ss_dssp -------CCTTCSSCCEEECT
T ss_pred -------ccCCCcccCEEECC
Confidence 35667777777665
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=6.1e-18 Score=199.80 Aligned_cols=167 Identities=25% Similarity=0.309 Sum_probs=142.0
Q ss_pred CcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCC
Q 000975 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~ 592 (1205)
.+.++..+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567788888888887553 68999999999987 455566799999999999999999775 67999999999999999
Q ss_pred cCCC-C-ccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 593 HLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 593 ~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
.++. + ..|+++++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|.+..++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 9888 4 568999999999999999998875 58899999999999988899999888999999999999999877554
Q ss_pred CCccchHhhccCCCCcEEEEe
Q 000975 670 QSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+++|+.|+++
T Consensus 213 -------~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 213 -------NLTPLVGLEELEMS 226 (452)
T ss_dssp -------CCTTCTTCCEEECT
T ss_pred -------cccccccccEEECc
Confidence 35667777777665
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.6e-17 Score=183.01 Aligned_cols=173 Identities=23% Similarity=0.356 Sum_probs=115.0
Q ss_pred hcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCC-CCCc-ccccCCCcCCc
Q 000975 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH-FPSL-PLSLGSLINLR 585 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~i~~L~~Lr 585 (1205)
.+.+++++++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|. +..+ |..+..+++|+
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 345677777777777666643 2 6777777777777665 3433445677777777777775 6666 55677777777
Q ss_pred EEEccCCcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCC
Q 000975 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 586 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
+|++++|.+.. +..+.++++|++|++++|.++.+|.. ++++++|++|++++|. ++.+++..+..+++|++|++++|
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCC
Confidence 77777777666 35567777777777777777766543 6677777777777753 66666655677777777777777
Q ss_pred cCccccCCCccchHhhccCCCCcEEEEe
Q 000975 663 FTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 663 ~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+.. ..+..+++|+.|+++
T Consensus 188 ~l~~~~~------~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 188 RVAHVHP------HAFRDLGRLMTLYLF 209 (285)
T ss_dssp CCCEECT------TTTTTCTTCCEEECC
T ss_pred cccccCH------hHccCcccccEeeCC
Confidence 6554321 345566666666665
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=4.1e-18 Score=190.14 Aligned_cols=166 Identities=23% Similarity=0.287 Sum_probs=116.6
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc---ccccCCCcCCcEEEccC
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL---PLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~Lr~L~L~~ 591 (1205)
+.++.+++.+..+|... .++|+.|++++|.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 35666677777777644 257788888887776 67777777788888888888877744 55666778888888888
Q ss_pred CcCCC-CccccccccCcEEEcccCCCCccch--hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcc--
Q 000975 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK-- 666 (1205)
Q Consensus 592 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~-- 666 (1205)
|.+.. +..+.++++|++|++++|.++.+|. .+.++++|++|++++|. +...++..++.+++|++|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccccc
Confidence 87776 5667778888888888887777653 57778888888887765 555555557777888888887776543
Q ss_pred ccCCCccchHhhccCCCCcEEEEe
Q 000975 667 VEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 667 ~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+ ..+..+++|+.|+++
T Consensus 167 ~~-------~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 167 LP-------DIFTELRNLTFLDLS 183 (306)
T ss_dssp EC-------SCCTTCTTCCEEECT
T ss_pred ch-------hHHhhCcCCCEEECC
Confidence 22 234555666665554
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.4e-17 Score=183.60 Aligned_cols=167 Identities=20% Similarity=0.315 Sum_probs=144.2
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.+++.+..+|... .++|+.|++++|.+. .++...|..+++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67888888899888654 578999999999997 57766779999999999999999977 7789999999999999997
Q ss_pred -CCC--CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 594 -LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 594 -l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
+.. +..+.++++|++|++++|.++.+ |..+.++++|++|++++|. +..+++..++++++|++|++++|.+..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCH
Confidence 777 57899999999999999999977 5668999999999999965 888888778999999999999998776553
Q ss_pred CCccchHhhccCCCCcEEEEe
Q 000975 670 QSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
..+..+++|+.|+++
T Consensus 171 ------~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 171 ------RAFRGLHSLDRLLLH 185 (285)
T ss_dssp ------TTTTTCTTCCEEECC
T ss_pred ------HHhcCccccCEEECC
Confidence 346677777777765
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=189.91 Aligned_cols=173 Identities=18% Similarity=0.268 Sum_probs=148.0
Q ss_pred hcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~ 586 (1205)
...+++++++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|++++|.++.+|.. ++++++|++
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 456899999999999988873 3 8999999999999987 46556679999999999999999999876 899999999
Q ss_pred EEccCCcCCC-Cc--cccccccCcEEEcccC-CCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 587 LSFDCCHLED-VA--RVGDLAKLEILSFRNS-HIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 587 L~L~~~~l~~-~~--~i~~L~~L~~L~L~~~-~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
|++++|.+.. +. .++++++|++|++++| .+..+ |..+.++++|++|++++|. +..+++..++++++|++|++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCC
Confidence 9999999988 44 7999999999999999 57777 4579999999999999976 7777666699999999999999
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
|.+..++. ..+..+++|+.|+++
T Consensus 208 n~l~~~~~------~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 208 KQHILLLE------IFVDVTSSVECLELR 230 (353)
T ss_dssp SCSTTHHH------HHHHHTTTEEEEEEE
T ss_pred Cccccchh------hhhhhcccccEEECC
Confidence 98765442 334567888888887
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.1e-16 Score=173.50 Aligned_cols=190 Identities=21% Similarity=0.227 Sum_probs=153.1
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..+++.++++++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|+|++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 3467889999999999987663 78999999999987 45556678999999999999999988764 889999999999
Q ss_pred CCcCCC-CccccccccCcEEEcccCCCCccc-hhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcccc
Q 000975 591 CCHLED-VARVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 591 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
+|.+.. |..+.++++|++|++++|+++.+| ..+.++++|++|++++|. +..+|++.+..+++|++|++++|.+..++
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccC
Confidence 999988 778899999999999999999887 458899999999999965 88888887889999999999999887766
Q ss_pred CCCccchHhhccCCCCcEEEEe------cchhhhccccccccccccce
Q 000975 669 GQSNASVVELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYR 710 (1205)
Q Consensus 669 ~~~~~~l~~L~~L~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~ 710 (1205)
. ..+..+++|+.|+++ ++........|+.++|++|.
T Consensus 165 ~------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 A------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp T------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred H------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 4 446778888888876 22333333344555555544
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.1e-16 Score=170.00 Aligned_cols=189 Identities=24% Similarity=0.356 Sum_probs=95.9
Q ss_pred CcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCC
Q 000975 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCC 592 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~ 592 (1205)
.+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 3455555555555554332 34555555555554 34444445555555555555555555443 345555555555555
Q ss_pred cCCC-C-ccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 593 HLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 593 ~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
.+.. + ..+.++++|++|++++|.++.+|. .+.++++|++|++++|. +..+++..++.+++|++|++++|.+..++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 5554 2 344555555555555555554433 24555555555555543 455554445555555555555555444332
Q ss_pred CCccchHhhccCCCCcEEEEec------c-hhhhccccccccccccceE
Q 000975 670 QSNASVVELKQLSSLTILDMHI------P-DAQLLLEDLISLDLERYRI 711 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~~------~-~~~~~~~~L~~l~L~~~~i 711 (1205)
..+..+++|+.|+++. + ..+..++.|+.++|++|.+
T Consensus 175 ------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 ------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 2344455555555541 1 1123344555566666643
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.6e-16 Score=169.58 Aligned_cols=176 Identities=25% Similarity=0.410 Sum_probs=155.0
Q ss_pred hcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 586 (1205)
.+..+++|++++|.+..++.. + ++++|++|++++|.+. .++..+|.++++|++|++++|.+..+|. .+..+++|++
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 456899999999999998863 3 8999999999999987 7888888999999999999999998875 4789999999
Q ss_pred EEccCCcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCc
Q 000975 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (1205)
Q Consensus 587 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 663 (1205)
|++++|.++. +..++++++|++|++++|.++.+|.. +.++++|++|++++|. +..+++..+.++++|++|++++|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence 9999999988 46689999999999999999999865 7899999999999965 888888779999999999999998
Q ss_pred CccccCCCccchHhhccCCCCcEEEEecch
Q 000975 664 TRKVEGQSNASVVELKQLSSLTILDMHIPD 693 (1205)
Q Consensus 664 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~ 693 (1205)
+..++. ..+..+++|+.|+++...
T Consensus 193 l~~~~~------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 LKRVPE------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred CCcCCH------HHhccccCCCEEEecCCC
Confidence 876663 457788999999997443
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.6e-16 Score=171.63 Aligned_cols=192 Identities=22% Similarity=0.240 Sum_probs=164.2
Q ss_pred hcCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEE
Q 000975 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLS 588 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~ 588 (1205)
....++.+++.++.+..++....+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.+|.. ++++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 357899999999999998877799999999999999874 43 468999999999999999988655 79999999999
Q ss_pred ccCCcCCC-C-ccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 589 FDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 589 L~~~~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+++|.++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|. ++.+++..++.+++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999988 3 5589999999999999999988765 6899999999999975 88888887899999999999999887
Q ss_pred cccCCCccchHhhccCCCCcEEEEecchhhhccccccccccccceE
Q 000975 666 KVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRI 711 (1205)
Q Consensus 666 ~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i 711 (1205)
.++. ..+..+++|+.|+++.......++.+..+++..+.+
T Consensus 195 ~~~~------~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 195 SVPD------GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 234 (272)
T ss_dssp CCCT------TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred ccCH------HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhC
Confidence 6553 457888999999998665556667777777776654
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.3e-16 Score=175.92 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=171.3
Q ss_pred hcCCCcEEEccCCCCCCCCCcc--CCCcceEEEeecCCCCC--CCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCc
Q 000975 510 ARKNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSL--QIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLR 585 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~--~~~~Lr~L~l~~n~~~~--~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 585 (1205)
.+.+++++++++|.+..+|... ++++|++|++++|.+.. ..+..+ ..+++|++|++++|.+..+|..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCC
Confidence 4568999999999999998754 89999999999998862 224444 679999999999999999999999999999
Q ss_pred EEEccCCcCCC-C--ccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCc-cChhhhcCCCCCCEEEcc
Q 000975 586 TLSFDCCHLED-V--ARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKV-IKPEVISRLSRLNELYMG 660 (1205)
Q Consensus 586 ~L~L~~~~l~~-~--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~-~~~~~l~~L~~L~~L~l~ 660 (1205)
+|++++|.+.. + ..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +.. ..+..++.+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECC
Confidence 99999999877 3 5799999999999999998855 5668999999999999976 543 333448999999999999
Q ss_pred CCcCccccCCCccchHhhccCCCCcEEEEecc-------hhhhccccccccccccceEEEccccccCCcc-CccceEEee
Q 000975 661 NSFTRKVEGQSNASVVELKQLSSLTILDMHIP-------DAQLLLEDLISLDLERYRIFIGDVWNWSGKY-ECSRTLKLK 732 (1205)
Q Consensus 661 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~-------~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~-~~l~~l~L~ 732 (1205)
+|.+..+.. ..+..+++|+.|+++.. .....+++|+.+++++|.+.... +...... ..++.+.+.
T Consensus 184 ~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 184 QCQLEQLSP------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLT 256 (306)
T ss_dssp TSCCCEECT------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECT
T ss_pred CCCcCCcCH------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEcc
Confidence 998776532 56778899999999722 23455678899999998874322 2222222 356666666
Q ss_pred ccCc
Q 000975 733 LDNS 736 (1205)
Q Consensus 733 ~~~~ 736 (1205)
.+..
T Consensus 257 ~N~~ 260 (306)
T 2z66_A 257 QNDF 260 (306)
T ss_dssp TCCE
T ss_pred CCCe
Confidence 5543
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-17 Score=186.56 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=20.7
Q ss_pred cCCCcCeeeeecCCCcccccchHHHHHcccCcEEEeccccc
Q 000975 830 SFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKI 870 (1205)
Q Consensus 830 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 870 (1205)
.+++|+.|++++| .++.+|. .+..+++|+.|++++++.
T Consensus 212 ~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 212 SAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp GGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCC
T ss_pred ccCcccEEECcCC-cccchhh--HhhcCCCCCEEEccCCCc
Confidence 3555666666665 4445543 134556666666666543
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=181.32 Aligned_cols=194 Identities=19% Similarity=0.281 Sum_probs=163.2
Q ss_pred HhcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCc
Q 000975 509 AARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLR 585 (1205)
Q Consensus 509 ~~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr 585 (1205)
..+.+++.+++++|.+..++.. + ++++|++|++++|.+. .++...|.++++|++|+|++|.++.+|. .|..+++|+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 3457899999999999888743 3 8999999999999987 6777778999999999999999998876 599999999
Q ss_pred EEEccCCcCCC--CccccccccCcEEEcccC-CCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 586 TLSFDCCHLED--VARVGDLAKLEILSFRNS-HIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 586 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
+|+|++|.+.. +..|.++++|++|++++| .+..+|. .+.++++|++|++++|. ++.+|. +..+++|++|++++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLSG 216 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECTT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECCC
Confidence 99999999988 368999999999999985 6777765 58999999999999975 888874 89999999999999
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEec-------chhhhccccccccccccceEE
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLERYRIF 712 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~-------~~~~~~~~~L~~l~L~~~~i~ 712 (1205)
|.+..+.. ..+..+++|+.|+++. +..+..+++|+.++|++|++.
T Consensus 217 N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 217 NHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp SCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred CccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 98876543 5678889999998862 233455677788888887763
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.1e-15 Score=169.72 Aligned_cols=186 Identities=18% Similarity=0.290 Sum_probs=158.3
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..++++++++++.+..++....+++|+.|++++|.+. .++. +..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 4589999999999999987668999999999999887 4555 689999999999999999886 59999999999999
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
+|.++....++++++|++|++++|.++.+|. +.++++|++|++++|. +..+++ ++.+++|++|++++|.+..++
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~-- 189 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDIS-- 189 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcCh--
Confidence 9999986669999999999999999998876 8999999999999975 777766 899999999999999876554
Q ss_pred CccchHhhccCCCCcEEEEecc-----hhhhccccccccccccceEE
Q 000975 671 SNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIF 712 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~ 712 (1205)
.+..+++|+.|+++.. .....+++|+.+++++|.+.
T Consensus 190 ------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 190 ------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 3788899999998722 12455667788888887763
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=3.8e-16 Score=171.16 Aligned_cols=164 Identities=22% Similarity=0.277 Sum_probs=126.1
Q ss_pred EEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcC
Q 000975 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHL 594 (1205)
Q Consensus 516 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l 594 (1205)
.+.-.+..+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34455566677776543 57999999999887 5666567889999999999999987754 688999999999999998
Q ss_pred CC--CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccC-hhhhcCCCCCCEEEccCCcCccccCC
Q 000975 595 ED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 595 ~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
.. +..+.++++|++|++++|.+..++. .++++++|++|++++|. +..++ +..++++++|++|++++|.+..++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~- 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCH-
Confidence 87 4778999999999999999988765 68899999999999965 66532 3448899999999999987765542
Q ss_pred CccchHhhccCCCCc
Q 000975 671 SNASVVELKQLSSLT 685 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~ 685 (1205)
..+..+..++.|.
T Consensus 167 --~~~~~l~~L~~l~ 179 (276)
T 2z62_A 167 --TDLRVLHQMPLLN 179 (276)
T ss_dssp --GGGHHHHTCTTCC
T ss_pred --HHhhhhhhccccc
Confidence 2334444444443
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=7.6e-16 Score=181.79 Aligned_cols=194 Identities=22% Similarity=0.267 Sum_probs=162.4
Q ss_pred HhcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCc
Q 000975 509 AARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLR 585 (1205)
Q Consensus 509 ~~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr 585 (1205)
..+.+++.|++++|.+..++.. + ++++|+.|++++|.+. .++...|.++++|++|+|++|.++.+|.. +..+++|+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 3457899999999999887543 3 8999999999999987 56666679999999999999999988765 89999999
Q ss_pred EEEccCCcCCC--CccccccccCcEEEcccC-CCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 586 TLSFDCCHLED--VARVGDLAKLEILSFRNS-HIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 586 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
+|+|++|.+.. +..|.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..+++|++|++++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSG 227 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECTT
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECcC
Confidence 99999999988 367999999999999984 7778875 48899999999999975 788864 88999999999999
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEec-------chhhhccccccccccccceEE
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLERYRIF 712 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~-------~~~~~~~~~L~~l~L~~~~i~ 712 (1205)
|.+..+.. ..+..+++|+.|+++. +..+..+++|+.++|++|++.
T Consensus 228 N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 228 NHFPEIRP------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp SCCSEECG------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCcccCc------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 98876543 5688889999998862 233455677788888887763
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=6.5e-18 Score=200.96 Aligned_cols=331 Identities=16% Similarity=0.090 Sum_probs=196.7
Q ss_pred hcCCCcEEEccCCCCCC-----CCCcc-CCCcceEEEeecCCCCCCCChhhhhCCC----ceeEEEeeCCCCC-----Cc
Q 000975 510 ARKNPTAISIPFRDISE-----LPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMT----ELLVLHLTGIHFP-----SL 574 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~-----l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~----~Lr~L~Ls~~~i~-----~l 574 (1205)
..++++++++++|.+.. ++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 35678888888887752 33333 6788888888888776444445555566 6888888888877 35
Q ss_pred ccccCCCcCCcEEEccCCcCCC--Ccccc-----ccccCcEEEcccCCCCc-----cchhccCCCccCEEeccCCCCCCc
Q 000975 575 PLSLGSLINLRTLSFDCCHLED--VARVG-----DLAKLEILSFRNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLKV 642 (1205)
Q Consensus 575 p~~i~~L~~Lr~L~L~~~~l~~--~~~i~-----~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~ 642 (1205)
|..+.++++|++|++++|.+.. +..+. .+.+|++|++++|.++. ++..+..+++|++|++++|. +..
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence 7778888888888888888764 33322 25578888888887774 45566777888888888865 554
Q ss_pred cChhhhc-----CCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecchhh------------hccccccccc
Q 000975 643 IKPEVIS-----RLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQ------------LLLEDLISLD 705 (1205)
Q Consensus 643 ~~~~~l~-----~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~~~~------------~~~~~L~~l~ 705 (1205)
.....+. ..++|++|++++|.+..... ......+..+++|+.|+++..... ...+.|+.++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 3322232 35688888888876553110 011234567778888877632110 1234555555
Q ss_pred cccceEEEccccccCCccCccceEEeeccCcccchhhHHHHhhhhchhhcccccCchhhhhhhcc--CCCccccceEEee
Q 000975 706 LERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN--GEGFPRLKHLHVQ 783 (1205)
Q Consensus 706 L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~l~~L~~L~L~ 783 (1205)
+++|.+...... ..+. ....+++|++|+++++.........+.. ....++|++|+++
T Consensus 263 L~~n~l~~~~~~--------------------~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 263 IWECGITAKGCG--------------------DLCR-VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp CTTSCCCHHHHH--------------------HHHH-HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred CcCCCCCHHHHH--------------------HHHH-HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 555543110000 0111 1223567888888877543332222200 1234689999998
Q ss_pred cCCceeEeecC---CCCCcccccccccccccccccceeccccccccccccCCCcCeeeeecCCCcc-----cccchHHHH
Q 000975 784 NDPKILCIANS---EGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLK-----HLFPSFMAE 855 (1205)
Q Consensus 784 ~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~~ 855 (1205)
+|. +...... .....+++|+.|+++++ .+.......+.... ....++|++|++++| .++ .++. .+.
T Consensus 322 ~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l-~~~~~~L~~L~L~~n-~i~~~~~~~l~~--~l~ 395 (461)
T 1z7x_W 322 SCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGL-GQPGSVLRVLWLADC-DVSDSSCSSLAA--TLL 395 (461)
T ss_dssp TSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHH-TSTTCCCCEEECTTS-CCCHHHHHHHHH--HHH
T ss_pred CCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHH-cCCCCceEEEECCCC-CCChhhHHHHHH--HHH
Confidence 884 2211000 01123578888888875 33322111110000 012679999999999 455 3332 456
Q ss_pred HcccCcEEEeccccc
Q 000975 856 KLLQLEELEVTDCKI 870 (1205)
Q Consensus 856 ~l~~L~~L~l~~c~~ 870 (1205)
.+++|++|++++|+.
T Consensus 396 ~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 396 ANHSLRELDLSNNCL 410 (461)
T ss_dssp HCCCCCEEECCSSSC
T ss_pred hCCCccEEECCCCCC
Confidence 789999999999853
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.7e-15 Score=163.14 Aligned_cols=169 Identities=20% Similarity=0.325 Sum_probs=144.8
Q ss_pred CCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccC
Q 000975 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDC 591 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~ 591 (1205)
..++++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.++.++. .+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45789999999999997664 68999999999998 4565667999999999999999997754 589999999999999
Q ss_pred CcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcccc
Q 000975 592 CHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 592 ~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
|.++. +..++++++|++|++++|.++.+|.. +.++++|++|++++|. +..+++..++.+++|++|++++|.+..++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99988 46789999999999999999998766 6899999999999965 88898877999999999999999887665
Q ss_pred CCCccchHhhccCCCCcEEEEe
Q 000975 669 GQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 669 ~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
. ..+..+++|+.|+++
T Consensus 172 ~------~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 172 H------GAFDRLGKLQTITLF 187 (251)
T ss_dssp T------TTTTTCTTCCEEECC
T ss_pred H------HHHhCCCCCCEEEee
Confidence 3 456677777777665
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=9.5e-16 Score=163.82 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=120.6
Q ss_pred CCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCC-CCCccc-ccCCCcCCcEEEccC-CcCCC--C
Q 000975 523 DISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH-FPSLPL-SLGSLINLRTLSFDC-CHLED--V 597 (1205)
Q Consensus 523 ~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~-i~~lp~-~i~~L~~Lr~L~L~~-~~l~~--~ 597 (1205)
.+..+|. -.++|+.|++++|.+. .+|...|.++++|++|++++|. ++.+|. .|.++++|++|++++ |.++. +
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3777777 3448999999999987 6777777899999999999997 888865 689999999999998 88887 3
Q ss_pred ccccccccCcEEEcccCCCCccchhccCCCccC---EEeccCCCCCCccChhhhcCCCCCC-EEEccCCcCcccc
Q 000975 598 ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLK---LLDLSNCSKLKVIKPEVISRLSRLN-ELYMGNSFTRKVE 668 (1205)
Q Consensus 598 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~L~~~~~l~~~~~~~l~~L~~L~-~L~l~~~~~~~~~ 668 (1205)
..|.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..+++..+.++++|+ +|++++|.+..++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 678899999999999999999987 88888888 9999997568888888789999999 9999888766544
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=8.6e-16 Score=168.27 Aligned_cols=193 Identities=21% Similarity=0.222 Sum_probs=154.7
Q ss_pred hcCCCcEEEccCCCCCCCCC-cc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~-~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~ 586 (1205)
.+..++++++++|.+..++. .+ ++++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++|++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 45689999999999988876 33 8999999999999887 567667799999999999999999775 66999999999
Q ss_pred EEccCCcCCC--CccccccccCcEEEcccCCCCc--cchhccCCCccCEEeccCCCCCCccChhhhcCCCCCC----EEE
Q 000975 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN----ELY 658 (1205)
Q Consensus 587 L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~----~L~ 658 (1205)
|++++|.+.. +..++++++|++|++++|.++. +|..+.++++|++|++++|. +..+++..+..+.+|+ +|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeee
Confidence 9999999988 3479999999999999999986 68899999999999999975 8888776677777777 899
Q ss_pred ccCCcCccccCCCccchHhhccCCCCcEEEEecc-------hhhhccccccccccccceE
Q 000975 659 MGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP-------DAQLLLEDLISLDLERYRI 711 (1205)
Q Consensus 659 l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~-------~~~~~~~~L~~l~L~~~~i 711 (1205)
+++|.+..++. ......+|+.|+++.. ..+..+++|+.+++++|.+
T Consensus 184 ls~n~l~~~~~-------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 184 LSLNPMNFIQP-------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCSSCCCEECT-------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cCCCcccccCc-------cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 99998776553 2222336777777621 1223445556666666554
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.2e-15 Score=166.40 Aligned_cols=163 Identities=18% Similarity=0.287 Sum_probs=136.2
Q ss_pred EEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC
Q 000975 517 ISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED 596 (1205)
Q Consensus 517 lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~ 596 (1205)
+++..+.+..+.....+++|+.|++.+|.+. .++. +..+++|++|++++|.+..++ .++.+++|++|++++|.++.
T Consensus 24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred HHhcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence 3444555555444458899999999999876 4543 588999999999999999875 79999999999999999988
Q ss_pred --CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCcc
Q 000975 597 --VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNA 673 (1205)
Q Consensus 597 --~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 673 (1205)
+..++++++|++|++++|.++.+|.. ++++++|++|++++|. ++.+++..++.+++|++|++++|.+..++.
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 174 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE---- 174 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH----
Confidence 35689999999999999999988765 7899999999999975 888888878999999999999998776553
Q ss_pred chHhhccCCCCcEEEEe
Q 000975 674 SVVELKQLSSLTILDMH 690 (1205)
Q Consensus 674 ~l~~L~~L~~L~~L~l~ 690 (1205)
..+..+++|+.|+++
T Consensus 175 --~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 175 --GVFDKLTQLKDLRLY 189 (272)
T ss_dssp --TTTTTCTTCCEEECC
T ss_pred --HHhcCCccCCEEECC
Confidence 346778888888876
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=4.3e-16 Score=184.57 Aligned_cols=125 Identities=21% Similarity=0.116 Sum_probs=72.3
Q ss_pred CCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEcc
Q 000975 533 CTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFR 612 (1205)
Q Consensus 533 ~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~ 612 (1205)
+++|++|++++|.+. .+++..|..+++|++|+|++|.++..++ ++.+++|++|+|++|.++.. ...++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---EECTTCCEEECC
T ss_pred CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---CCCCCcCEEECc
Confidence 335666666666665 3444444666666666666666655443 66666666666666665541 122566666666
Q ss_pred cCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 613 NSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 613 ~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+|.+..+|. ..+++|++|++++|. +..+++..++++++|++|++++|.+.
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred CCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC
Confidence 666665543 245666666666644 55554444566666666666666544
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=7e-15 Score=161.63 Aligned_cols=164 Identities=22% Similarity=0.338 Sum_probs=145.7
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..+++.+++++|.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 4679999999999999987669999999999999987 4554 6899999999999999999875 9999999999999
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
+|.++.+..++.+++|++|++++|.++.+ ..+.++++|++|++++|. +..+++ ++.+++|++|++++|.+..++
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~l~-- 194 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDLR-- 194 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBCG--
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCCCh--
Confidence 99999988899999999999999999988 479999999999999975 787766 899999999999999876543
Q ss_pred CccchHhhccCCCCcEEEEe
Q 000975 671 SNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..+++|+.|+++
T Consensus 195 ------~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 195 ------ALAGLKNLDVLELF 208 (291)
T ss_dssp ------GGTTCTTCSEEEEE
T ss_pred ------hhccCCCCCEEECc
Confidence 47788888888876
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=7.1e-16 Score=172.45 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=153.4
Q ss_pred cCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEE
Q 000975 511 RKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 588 (1205)
..++++|++++|.+..++.. + .+++|++|++++|.+.+..+ |..+++|++|++++|.++.+|. +++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 45799999999999888743 3 89999999999999874333 6889999999999999887763 38999999
Q ss_pred ccCCcCCCCccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhh-cCCCCCCEEEccCCcCcc
Q 000975 589 FDCCHLEDVARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVI-SRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 589 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l-~~L~~L~~L~l~~~~~~~ 666 (1205)
+++|.+.... ...+++|++|++++|.++.++. .++.+++|++|++++|. +..+++..+ ..+++|++|++++|.+..
T Consensus 106 l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 9999988721 1236889999999999998754 68889999999999965 666655445 478999999999998776
Q ss_pred ccCCCccchHhhccCCCCcEEEEe------cchhhhccccccccccccceEEEccccccCCccCccceEEeeccC
Q 000975 667 VEGQSNASVVELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDN 735 (1205)
Q Consensus 667 ~~~~~~~~l~~L~~L~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~ 735 (1205)
+++ ...+++|+.|+++ ++..+..+++|+.++|++|.+.. .+........++.+.+..+.
T Consensus 184 ~~~--------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 184 VKG--------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EEC--------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred ccc--------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCC
Confidence 542 2347888888886 33445667788888888887642 23333333444444444433
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.1e-15 Score=164.21 Aligned_cols=173 Identities=19% Similarity=0.234 Sum_probs=151.3
Q ss_pred hcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEE
Q 000975 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 587 (1205)
.+..++.|++++|.+..++.. + .+++|+.|++++|.+. .++.. ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 456899999999999887643 3 8999999999999987 44442 78999999999999999999999999999999
Q ss_pred EccCCcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcC
Q 000975 588 SFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 588 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
++++|.++. +..|.++++|++|++++|+++.+|.. +..+++|++|++++|. ++.+|++.+.++++|++|++++|.+
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence 999999998 37799999999999999999998765 6899999999999965 8899988789999999999999998
Q ss_pred ccccCCCccchHhhccCCCCcEEEEecch
Q 000975 665 RKVEGQSNASVVELKQLSSLTILDMHIPD 693 (1205)
Q Consensus 665 ~~~~~~~~~~l~~L~~L~~L~~L~l~~~~ 693 (1205)
..++ ..+..+.+|+.++++...
T Consensus 185 ~~ip-------~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 185 YTIP-------KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCC-------TTTTTTCCCSEEECCSCC
T ss_pred CccC-------hhhcccccCCeEEeCCCC
Confidence 8777 355667789999987433
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.4e-16 Score=177.80 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=94.8
Q ss_pred CCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCC-CCCCChhhh------hCCCceeEEEeeCCCCC-Cccccc--CCC
Q 000975 513 NPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDS-SLQIPNQFF------DGMTELLVLHLTGIHFP-SLPLSL--GSL 581 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~-~~~~~~~~~------~~l~~Lr~L~Ls~~~i~-~lp~~i--~~L 581 (1205)
+++.+++++|.+ .+|..+ .. |+.|++++|.+ ...+|..++ .++++|++|++++|.+. .+|..+ +.+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 355556666666 555533 22 66677777666 334554431 15677777777777776 456665 677
Q ss_pred cCCcEEEccCCcCCC-Ccccccc-----ccCcEEEcccCCCCccc-hhccCCCccCEEeccCCCCCCc--cChh-hhcCC
Q 000975 582 INLRTLSFDCCHLED-VARVGDL-----AKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKV--IKPE-VISRL 651 (1205)
Q Consensus 582 ~~Lr~L~L~~~~l~~-~~~i~~L-----~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--~~~~-~l~~L 651 (1205)
++|++|+|++|.++. |..++.+ ++|++|++++|.+..+| ..++++++|++|++++|..... +++. .++++
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 777777777777766 5666666 77777777777777665 5677777777777777653322 1222 12677
Q ss_pred CCCCEEEccCCcCc
Q 000975 652 SRLNELYMGNSFTR 665 (1205)
Q Consensus 652 ~~L~~L~l~~~~~~ 665 (1205)
++|++|++++|.+.
T Consensus 201 ~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 201 PTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEECTTSCCC
T ss_pred CCCCEEECCCCcCc
Confidence 77777777777655
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=8.5e-15 Score=157.53 Aligned_cols=154 Identities=23% Similarity=0.333 Sum_probs=137.2
Q ss_pred hcCCCcEEEccCCCCCCCCCcc--CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcE
Q 000975 510 ARKNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~--~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 586 (1205)
.+..++.|++++|.+..++... ++++|++|++++|.+. .++...|..+++|++|++++|.++.+|. .+..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 4568999999999998887643 8999999999999998 5666677999999999999999998864 5899999999
Q ss_pred EEccCCcCCC-C-ccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCc
Q 000975 587 LSFDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (1205)
Q Consensus 587 L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 663 (1205)
|+|++|.++. + ..++++.+|++|++++|.++.+|. .++++++|++|++++|. +..+++..+..+++|++|++++|.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 9999999998 4 557999999999999999999977 58999999999999965 888888779999999999999997
Q ss_pred Cc
Q 000975 664 TR 665 (1205)
Q Consensus 664 ~~ 665 (1205)
+.
T Consensus 191 ~~ 192 (251)
T 3m19_A 191 FD 192 (251)
T ss_dssp BC
T ss_pred ee
Confidence 65
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.2e-14 Score=153.55 Aligned_cols=148 Identities=24% Similarity=0.326 Sum_probs=131.0
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.+++.+..+|..+. ++|+.|++++|.+.+ ++...|..+++|++|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 468888888999987654 899999999999984 5555679999999999999999998754 7999999999999999
Q ss_pred CCC-C-ccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 594 LED-V-ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 594 l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++. + ..+..+.+|++|++++|+++.+|..+.++++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 988 3 55789999999999999999999999999999999999965 88888877999999999999998654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=3.5e-15 Score=159.37 Aligned_cols=172 Identities=12% Similarity=0.207 Sum_probs=145.8
Q ss_pred hcCCCcEEEccCCCCCCCCCc-c-CCCcceEEEeecCC-CCCCCChhhhhCCCceeEEEeeC-CCCCCcc-cccCCCcCC
Q 000975 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTED-SSLQIPNQFFDGMTELLVLHLTG-IHFPSLP-LSLGSLINL 584 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~n~-~~~~~~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~L 584 (1205)
.+..++.+++++|.+..++.. + .+++|++|++++|. +. .++...|.++++|++|++++ |.++.+| ..|.++++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 456899999999999998873 3 89999999999997 65 78877789999999999998 9999886 468999999
Q ss_pred cEEEccCCcCCCCccccccccCc---EEEcccC-CCCccchh-ccCCCccC-EEeccCCCCCCccChhhhcCCCCCCEEE
Q 000975 585 RTLSFDCCHLEDVARVGDLAKLE---ILSFRNS-HIEQLPEQ-IGNLTRLK-LLDLSNCSKLKVIKPEVISRLSRLNELY 658 (1205)
Q Consensus 585 r~L~L~~~~l~~~~~i~~L~~L~---~L~L~~~-~l~~lp~~-i~~L~~L~-~L~L~~~~~l~~~~~~~l~~L~~L~~L~ 658 (1205)
++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++|. ++.+|...+.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEE
Confidence 99999999998844488888888 9999999 99998764 88999999 99999965 78888875655 8999999
Q ss_pred ccCCc-CccccCCCccchHhhccC-CCCcEEEEe
Q 000975 659 MGNSF-TRKVEGQSNASVVELKQL-SSLTILDMH 690 (1205)
Q Consensus 659 l~~~~-~~~~~~~~~~~l~~L~~L-~~L~~L~l~ 690 (1205)
+++|. +..++. ..+..+ ++|+.|+++
T Consensus 186 L~~n~~l~~i~~------~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 186 LNKNKYLTVIDK------DAFGGVYSGPSLLDVS 213 (239)
T ss_dssp CTTCTTCCEECT------TTTTTCSBCCSEEECT
T ss_pred cCCCCCcccCCH------HHhhccccCCcEEECC
Confidence 99994 766553 456667 778887776
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.4e-15 Score=176.89 Aligned_cols=183 Identities=16% Similarity=0.205 Sum_probs=149.7
Q ss_pred CCCcEEEccCCCCCCCCC-cc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 512 KNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~-~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
.+++.|++++|.+..+++ .+ .+++|++|++++|.+.+..| |..+++|++|+|++|.++.+|.. ++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 379999999999998875 33 89999999999999875444 68999999999999999887743 89999999
Q ss_pred cCCcCCC-CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhc-CCCCCCEEEccCCcCcc
Q 000975 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVIS-RLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 590 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~-~L~~L~~L~l~~~~~~~ 666 (1205)
++|.+.. +. ..+++|++|++++|.++.+ |..++++++|++|++++|. +...++..+. .+++|++|++++|.+..
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9999988 33 2468999999999999977 5578999999999999976 6665555465 89999999999998876
Q ss_pred ccCCCccchHhhccCCCCcEEEEe------cchhhhccccccccccccceEE
Q 000975 667 VEGQSNASVVELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRIF 712 (1205)
Q Consensus 667 ~~~~~~~~l~~L~~L~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i~ 712 (1205)
+++ ...+++|+.|+++ ++..+..+++|..++|++|.+.
T Consensus 184 ~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 184 VKG--------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EEC--------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred ccc--------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 542 3358889999887 3344556777888888888764
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=152.95 Aligned_cols=149 Identities=13% Similarity=0.239 Sum_probs=129.3
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++++++.+..+|..+ .+.++.|++++|.+.+..+..+|..+++|++|+|++|.|+.++. .|.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57889999999998755 44678999999999855566778999999999999999998865 69999999999999999
Q ss_pred CCC--CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 594 LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 594 l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++. +..|+++++|++|+|++|.++.+ |..+.++++|++|+|++|. ++.+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 988 45699999999999999999987 6779999999999999965 88887777999999999999988654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1e-14 Score=165.47 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=108.8
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCC-ccc-ccCCCcCCcE-EEccC
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPL-SLGSLINLRT-LSFDC 591 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~-~i~~L~~Lr~-L~L~~ 591 (1205)
+.++-+++.++.+|..+ .++++.|++++|.+. .+|.+.|.++++|++|+|++|.+.+ +|. .|.++++|+. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45666677788887655 357888888888876 6777777888888888888888754 443 4777877665 55566
Q ss_pred CcCCC--CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCC-CCCEEEccCCcCccc
Q 000975 592 CHLED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLS-RLNELYMGNSFTRKV 667 (1205)
Q Consensus 592 ~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~-~L~~L~l~~~~~~~~ 667 (1205)
|.+.. +..|.++++|++|++++|+++.+|. .+....++.+|++.++..+..++...+..+. .|++|++++|.+..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 77776 4677888888888888888887764 3455667777888777777777776666654 577778777766544
Q ss_pred c
Q 000975 668 E 668 (1205)
Q Consensus 668 ~ 668 (1205)
+
T Consensus 170 ~ 170 (350)
T 4ay9_X 170 H 170 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=3.1e-14 Score=158.04 Aligned_cols=166 Identities=22% Similarity=0.336 Sum_probs=148.0
Q ss_pred hcCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
...+++.|++++|.+..++....+++|+.|++++|.+. .++ .+..+++|++|++++|.++.+|. +..+++|++|++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred ccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC
Confidence 36789999999999999988559999999999999987 454 36899999999999999999876 999999999999
Q ss_pred cCCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccC
Q 000975 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 590 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
++|.++....++++++|++|++++|.++.+|. +.++++|++|++++|. +..+++ +..+++|++|++++|.+..++
T Consensus 137 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~~- 211 (308)
T 1h6u_A 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQISDVS- 211 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCCCBCG-
T ss_pred CCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCCccCccc-
Confidence 99999986559999999999999999999887 9999999999999975 788765 899999999999999877554
Q ss_pred CCccchHhhccCCCCcEEEEec
Q 000975 670 QSNASVVELKQLSSLTILDMHI 691 (1205)
Q Consensus 670 ~~~~~l~~L~~L~~L~~L~l~~ 691 (1205)
.+..+++|+.|+++.
T Consensus 212 -------~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 212 -------PLANTSNLFIVTLTN 226 (308)
T ss_dssp -------GGTTCTTCCEEEEEE
T ss_pred -------cccCCCCCCEEEccC
Confidence 378899999999983
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=1.4e-14 Score=151.81 Aligned_cols=148 Identities=19% Similarity=0.271 Sum_probs=126.1
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++.+++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|+|++|.+..+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467788888888887654 68999999999887 57776778999999999999999877 7789999999999999999
Q ss_pred CCC-C-ccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 594 LED-V-ARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 594 l~~-~-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++. | ..|.++++|++|+|++|.++.+ |..+..+++|++|+|++|. +..+++..+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888 4 4578899999999999999977 5668899999999999965 88888877889999999999988654
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=7e-14 Score=159.31 Aligned_cols=296 Identities=13% Similarity=0.113 Sum_probs=177.9
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC------CHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP------DWKEIC 221 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~ 221 (1205)
+.....|+||+++++.+.+++... +++.|+|++|+|||||++++++.. + ++|+++.... +...++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C----cEEEEeecccccccCCCHHHHH
Confidence 344567999999999999988753 789999999999999999998764 1 7788876432 566667
Q ss_pred HHHHHHhCC-----------------CCC-CCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc-----ccccCCCCCC
Q 000975 222 GRIADQLGL-----------------EIV-RPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-----DDIGIPFWDG 278 (1205)
Q Consensus 222 ~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~~~~~~~~~ 278 (1205)
..+.+.+.. ... ......+....+.+.....++.+|||||++....+ ..+...+.
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~-- 156 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA-- 156 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH--
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH--
Confidence 767665542 000 01133444444544443224899999999886532 11111110
Q ss_pred CccccCCCCCeEEEEecCchhH-Hhh----c----C--CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHH
Q 000975 279 EKQSVDNQGRWTLLLASRDQHV-LRI----N----M--SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVG 347 (1205)
Q Consensus 279 ~~~~~~~~~~s~ilvTTr~~~v-~~~----~----~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~ 347 (1205)
.......+.++|+|++.... ... . . .....+++.+|+.+|+.+++.+.++..... -..+.+.+|++
T Consensus 157 --~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~ 233 (350)
T 2qen_A 157 --YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVE 233 (350)
T ss_dssp --HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHH
T ss_pred --HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 00012357889999887643 110 0 1 112479999999999999998876321111 12456789999
Q ss_pred hcCCChHHHHHHHHHhcC-CCchHH-HHHHHHHHhcCCCcccccccchhhHHhhhhcC---cHHHHHHHHHhcccCCCCc
Q 000975 348 KCGGLPIAVSTIANALKG-QSTHVW-KDAINWLRKSNPRKIKGMDADLSSIELSYKVL---EPEAQFLFQLCGLLNDGSR 422 (1205)
Q Consensus 348 ~~~glPLai~~~~~~l~~-~~~~~w-~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~f~~~s~fp~~~~ 422 (1205)
.++|+|+++..++..+.. .+...+ ..+.+.. ...+.-.+..+ ++..+..+..+|. . .
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~l~~~~~~~~~~l~~la~--g--~ 295 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA--------------KGLIMGELEELRRRSPRYVDILRAIAL--G--Y 295 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHT--T--C
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH--------------HHHHHHHHHHHHhCChhHHHHHHHHHh--C--C
Confidence 999999999998876532 222111 1111111 01111111222 7888999999987 2 2
Q ss_pred cCHHHHHHHHHHcccccccchhHHHHHHHHHHHHHhhccccccccCCCCCcEEE-ehHHHHHHH
Q 000975 423 LPIDDLIRYVFALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGDTEDHVKM-HQIIHALAV 485 (1205)
Q Consensus 423 i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~~~~~ 485 (1205)
.+...+.....+.. . +. +.. .+.++++.|.+.+++... .+.|.+ |++++++.+
T Consensus 296 ~~~~~l~~~~~~~~--~-~~-~~~----~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVKG--T-KI-PEP----RLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHTT--C-CC-CHH----HHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHh--C-CC-CHH----HHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 45555544332111 0 11 111 234567788889988765 356766 678887754
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.9e-14 Score=148.19 Aligned_cols=148 Identities=18% Similarity=0.248 Sum_probs=113.0
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCC-cccccCCCcCCcEEEc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPLSLGSLINLRTLSF 589 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~Lr~L~L 589 (1205)
..+++++++++|.+..+|....+++|++|++++|.+. .++ .+..+++|++|++++|.++. .|..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4568888888888888885458888888888888554 232 35778888888888888874 5777888888888888
Q ss_pred cCCcCCC--CccccccccCcEEEcccCC-CCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 590 DCCHLED--VARVGDLAKLEILSFRNSH-IEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 590 ~~~~l~~--~~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
++|.++. +..++++++|++|++++|. ++.+| .+.++++|++|++++|. +..++ .+..+++|++|++++|.+.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH--HhccCCCCCEEEeeCcccC
Confidence 8888876 6778888888888888886 77777 67888888888888865 66665 2778888888888887654
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=4e-14 Score=170.69 Aligned_cols=164 Identities=23% Similarity=0.345 Sum_probs=145.1
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
...++.|+++++.+..++....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 5679999999999999987669999999999999987 4554 689999999999999999887 69999999999999
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCC
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
+|.+..++.+..+++|+.|+|++|.+..+ ..+..|++|++|+|++|. +..+++ +..+++|++|++++|.+..+
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~l--- 190 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDL--- 190 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBC---
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCCC---
Confidence 99999988899999999999999999988 479999999999999975 777766 89999999999999977654
Q ss_pred CccchHhhccCCCCcEEEEe
Q 000975 671 SNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~ 690 (1205)
..+..+++|+.|+++
T Consensus 191 -----~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 191 -----RALAGLKNLDVLELF 205 (605)
T ss_dssp -----GGGTTCTTCSEEECC
T ss_pred -----hHHccCCCCCEEEcc
Confidence 357778888888776
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=8.2e-15 Score=163.35 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=90.0
Q ss_pred cCCCcEEEccCCCCC-CCCCc---cCCCcceEEEeecCCCCCCCChhhhhCC-----CceeEEEeeCCCCCCcc-cccCC
Q 000975 511 RKNPTAISIPFRDIS-ELPDS---LQCTRLKLFLLFTEDSSLQIPNQFFDGM-----TELLVLHLTGIHFPSLP-LSLGS 580 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~-~l~~~---~~~~~Lr~L~l~~n~~~~~~~~~~~~~l-----~~Lr~L~Ls~~~i~~lp-~~i~~ 580 (1205)
..++++|++++|.+. .+|.. ..+++|++|++++|.+.+. |.. +..+ ++|++|++++|.+..++ ..+++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 456666666666664 34443 2566666666666666533 432 3444 66666666666666554 55666
Q ss_pred CcCCcEEEccCCcCCC----Cccc--cccccCcEEEcccCCCCccc---hh-ccCCCccCEEeccCCCCCCccC-hhhhc
Q 000975 581 LINLRTLSFDCCHLED----VARV--GDLAKLEILSFRNSHIEQLP---EQ-IGNLTRLKLLDLSNCSKLKVIK-PEVIS 649 (1205)
Q Consensus 581 L~~Lr~L~L~~~~l~~----~~~i--~~L~~L~~L~L~~~~l~~lp---~~-i~~L~~L~~L~L~~~~~l~~~~-~~~l~ 649 (1205)
+++|++|++++|.+.. +..+ +++++|++|++++|.++.+| .. +.++++|++|++++|. +...+ ...+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence 6666666666666443 2233 66666666666666666332 22 3456666666666654 44432 22345
Q ss_pred CCCCCCEEEccCCcCcccc
Q 000975 650 RLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 650 ~L~~L~~L~l~~~~~~~~~ 668 (1205)
.+++|++|++++|.+..++
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp CCTTCCEEECTTSCCSSCC
T ss_pred hcCCCCEEECCCCccChhh
Confidence 5666666666666555443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=5e-14 Score=154.76 Aligned_cols=178 Identities=22% Similarity=0.293 Sum_probs=147.4
Q ss_pred ccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCc
Q 000975 519 IPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVA 598 (1205)
Q Consensus 519 l~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~ 598 (1205)
+..+.+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. ++++++|++|++++|.++.++
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 44455555444447899999999999886 5554 6889999999999999999987 999999999999999999977
Q ss_pred cccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhh
Q 000975 599 RVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVEL 678 (1205)
Q Consensus 599 ~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L 678 (1205)
.++++++|++|++++|.++.++ .+..+++|++|++++|. +..++ .++.+++|++|++++|.+..++ .+
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~N~l~~~~--------~l 174 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQISDIV--------PL 174 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCCCCG--------GG
T ss_pred hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch--hhccCCCCCEEEccCCccccch--------hh
Confidence 7999999999999999999985 68999999999999975 77773 3899999999999999877554 27
Q ss_pred ccCCCCcEEEEecc-----hhhhccccccccccccceEE
Q 000975 679 KQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIF 712 (1205)
Q Consensus 679 ~~L~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~ 712 (1205)
..+++|+.|+++.. .....+++|+.+++++|.+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 88899999998722 23455667777888877764
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.5e-13 Score=143.11 Aligned_cols=147 Identities=25% Similarity=0.376 Sum_probs=123.7
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~ 593 (1205)
+.++..++.+..+|... .++|++|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46777778888887654 468999999999887 67777778999999999999999988665 6889999999999999
Q ss_pred CCC-C-ccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcC
Q 000975 594 LED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 594 l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|. +..+++..+..+++|++|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 888 3 4578999999999999999988765 6889999999999965 7788877788899999999988854
No 101
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.51 E-value=5.5e-13 Score=155.58 Aligned_cols=307 Identities=14% Similarity=0.090 Sum_probs=183.4
Q ss_pred cccCCChHHHHHHHHHh-c----c--CCccEEEE--EcCCCCcHHHHHHHHHHHHhhc---CCC-cEEEEEEecCCCCHH
Q 000975 152 VHFPSRNPVFQKMMESL-R----D--SNVNMIGL--YGMGGVGKTTLVKVVARQVVKE---DLF-DVVVDAEVTHTPDWK 218 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~i--~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~ 218 (1205)
..|+||+++++.+.+++ . . ...+.+.| +|++|+||||||+.+++..... ..| ..++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 46899999999999988 4 2 24567777 9999999999999999886532 122 246888887778889
Q ss_pred HHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHHc-CCeEEEEEcccccccc--------cccccCCCCCCCccccC-CC-
Q 000975 219 EICGRIADQLGLEIVR-PDSLVEKANQLRQALKK-KKRVLVILDDIWTQIN--------LDDIGIPFWDGEKQSVD-NQ- 286 (1205)
Q Consensus 219 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--------~~~~~~~~~~~~~~~~~-~~- 286 (1205)
.++..++++++..... ..+..+....+.+.+.. +++++|||||++.... +..+...+.. .+ .+
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~-----~~~~~~ 176 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE-----IPSRDG 176 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH-----SCCTTS
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh-----cccCCC
Confidence 9999999999875432 22344556666666642 5799999999987532 1111111110 00 12
Q ss_pred -CCeEEEEecCchhHHh--------hcCCCCceEEccCCChHhHHHHHHHHhCC-CCCCCchHHHHHHHHHhcC------
Q 000975 287 -GRWTLLLASRDQHVLR--------INMSNPRIFSISTLADGEAKSLFEKIVGD-SAKESDCRAIGVEIVGKCG------ 350 (1205)
Q Consensus 287 -~~s~ilvTTr~~~v~~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~------ 350 (1205)
....||+||+...+.. ........+++++++.++++++|..++.. .....-..+....|++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 4556888887665321 00111233999999999999999876521 0111123467789999999
Q ss_pred CChHHHHHHHHH-hc-----CC---CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhcccC--C
Q 000975 351 GLPIAVSTIANA-LK-----GQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLN--D 419 (1205)
Q Consensus 351 glPLai~~~~~~-l~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp--~ 419 (1205)
|.|..+..+... .. +. +...+..+...... ...+.-++..||+..+.++..++.+. .
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 999655544332 11 11 12223332221100 12344567889999999999998763 3
Q ss_pred CCccCHHHHHHHHH--H-cccccccchhHHHHHHHHHHHHHhhccccccccC----CCCCcEEEehHH
Q 000975 420 GSRLPIDDLIRYVF--A-LDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNG----DTEDHVKMHQII 480 (1205)
Q Consensus 420 ~~~i~~~~li~~w~--a-~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mHdlv 480 (1205)
+..+....+...+. + .- .-....+. ..+.++++.|.+.+++... +..+.|++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTM-YNVKPRGY----TQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHH-SCCCCCCH----HHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhh-cCCCCCCH----HHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 34566666655442 1 11 00000011 2344567788888988643 123446566544
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=2.3e-13 Score=155.50 Aligned_cols=291 Identities=12% Similarity=0.168 Sum_probs=170.8
Q ss_pred CCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-----CCHHHHHHH
Q 000975 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-----PDWKEICGR 223 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 223 (1205)
.....|+||+++++.+.+ +.. +++.|+|++|+|||+|++.+++... . ..+|+++... .+....+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHH
Confidence 344578999999999999 764 6999999999999999999998764 2 2588887643 344555555
Q ss_pred HHHHhC------------------CCCCCC----CC---HHHHHHHHHHHHHcC--CeEEEEEcccccccc-----cccc
Q 000975 224 IADQLG------------------LEIVRP----DS---LVEKANQLRQALKKK--KRVLVILDDIWTQIN-----LDDI 271 (1205)
Q Consensus 224 i~~~l~------------------~~~~~~----~~---~~~~~~~l~~~l~~~--k~~LlVlDdv~~~~~-----~~~~ 271 (1205)
+.+.+. ...... .. .......+.+.+.+. ++++|||||++.... +..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 444331 000000 00 011133344444431 489999999987532 2111
Q ss_pred cCCCCCCCccccCCCCCeEEEEecCchhHH-hh--------cC-CC-CceEEccCCChHhHHHHHHHHhCC-CCCCCchH
Q 000975 272 GIPFWDGEKQSVDNQGRWTLLLASRDQHVL-RI--------NM-SN-PRIFSISTLADGEAKSLFEKIVGD-SAKESDCR 339 (1205)
Q Consensus 272 ~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-~~--------~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~ 339 (1205)
...+.. ...+.++|+|+|..... .. .. +. ...+++.+|+.+|+.+++.+.++. ....+.
T Consensus 161 l~~~~~-------~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-- 231 (357)
T 2fna_A 161 LAYAYD-------NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-- 231 (357)
T ss_dssp HHHHHH-------HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--
T ss_pred HHHHHH-------cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--
Confidence 111111 22478899999976532 10 01 12 357999999999999999986531 111122
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCC-CchHHH-HHHHHHHhcCCCcccccccchhhHH-hhh--hcCcHHHHHHHHHh
Q 000975 340 AIGVEIVGKCGGLPIAVSTIANALKGQ-STHVWK-DAINWLRKSNPRKIKGMDADLSSIE-LSY--KVLEPEAQFLFQLC 414 (1205)
Q Consensus 340 ~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~-~~l~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~~f~~~ 414 (1205)
. .+|++.++|+|+++..++..+... +...|. ++.+..... + ...+. +.+ ..+++..+..+..+
T Consensus 232 -~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 232 -Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL-------I---LKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp -H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------H---HHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred -H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH-------H---HHHHHHHhhccccccHHHHHHHHHH
Confidence 1 789999999999999998876432 222231 111111000 0 11111 111 16888999999999
Q ss_pred cccCCCCccCHHHHHHHHH-HcccccccchhHHHHHHHHHHHHHhhccccccccCCCCCcEEE-ehHHHHHH
Q 000975 415 GLLNDGSRLPIDDLIRYVF-ALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGDTEDHVKM-HQIIHALA 484 (1205)
Q Consensus 415 s~fp~~~~i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~~~~ 484 (1205)
|. . . +...+....- ..| . ..+. ..+.++++.|.+.+++...+ +.|++ |++++++.
T Consensus 300 a~--g-~--~~~~l~~~~~~~~g-~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK--C-G--KWSDVKRALELEEG-I---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp TT--C-B--CHHHHHHHHHHHHC-S---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred Hc--C-C--CHHHHHHHHHHhcC-C---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 98 2 1 4444433211 112 0 0011 22345678888899987652 56775 78888764
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=9.5e-14 Score=142.98 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=126.8
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--CccccccccCcEE
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEIL 609 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L 609 (1205)
++++|+.|++++|.+. .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 7889999999999987 677 3 689999999999999887776 68999999999999999986 8899999999999
Q ss_pred EcccCCCCc-cchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEE
Q 000975 610 SFRNSHIEQ-LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILD 688 (1205)
Q Consensus 610 ~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 688 (1205)
++++|.++. .|..++++++|++|++++|..+..++. ++.+++|++|++++|.+..++ .+..+++|+.|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~--------~l~~l~~L~~L~ 187 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR--------GIEDFPKLNQLY 187 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT--------TGGGCSSCCEEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH--------HhccCCCCCEEE
Confidence 999999985 678899999999999999876888863 899999999999999776433 567778888877
Q ss_pred Ee
Q 000975 689 MH 690 (1205)
Q Consensus 689 l~ 690 (1205)
++
T Consensus 188 l~ 189 (197)
T 4ezg_A 188 AF 189 (197)
T ss_dssp EC
T ss_pred ee
Confidence 75
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=1.8e-14 Score=163.13 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=73.5
Q ss_pred ceEEEeecCCCCCCCChhhhhCC--CceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC---CccccccccCcEEE
Q 000975 536 LKLFLLFTEDSSLQIPNQFFDGM--TELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED---VARVGDLAKLEILS 610 (1205)
Q Consensus 536 Lr~L~l~~n~~~~~~~~~~~~~l--~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~ 610 (1205)
++.++++++.+. +..+..+ +.+++|++++|.+...+..+..+++|++|++++|.+.. +..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 344444444332 2333444 66677777776666555556666777777777776553 35566667777777
Q ss_pred cccCCCC-ccchhccCCCccCEEeccCCCCCCc--cChhhhcCCCCCCEEEccCC
Q 000975 611 FRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 611 L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~L~~L~~L~l~~~ 662 (1205)
+++|.++ ..|..++++++|++|++++|..++. ++ ..++++++|++|++++|
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCC
Confidence 7777666 4556666677777777777644543 32 23566677777777666
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1e-13 Score=157.80 Aligned_cols=151 Identities=24% Similarity=0.317 Sum_probs=128.9
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhh-CCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCC
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFD-GMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~ 592 (1205)
+.++.+++.+..+|..+ .+.++.|++++|.+. .++...|. ++++|++|+|++|.|+.++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888899999998755 346899999999987 56666666 8999999999999999886 46999999999999999
Q ss_pred cCCC--CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCCCccChhhh---cCCCCCCEEEccCCcCcc
Q 000975 593 HLED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVI---SRLSRLNELYMGNSFTRK 666 (1205)
Q Consensus 593 ~l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l---~~L~~L~~L~l~~~~~~~ 666 (1205)
.+.. +..|.++.+|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|...+ ..+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9988 35789999999999999999987 5679999999999999965 888988766 679999999999998776
Q ss_pred cc
Q 000975 667 VE 668 (1205)
Q Consensus 667 ~~ 668 (1205)
++
T Consensus 178 l~ 179 (361)
T 2xot_A 178 LP 179 (361)
T ss_dssp CC
T ss_pred cC
Confidence 55
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=8.4e-14 Score=150.33 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=117.3
Q ss_pred CcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCc
Q 000975 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 593 (1205)
+..+.+..+.+..++...++++|+.|++++|.+. .++ .+..+++|++|++++|.++.+|. +.++++|++|++++|.
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 4445566677776664447788888888888776 555 25778888888888888888776 8888888888888888
Q ss_pred CCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCcc
Q 000975 594 LEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNA 673 (1205)
Q Consensus 594 l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 673 (1205)
++..+.+.. .+|++|++++|.++.+| .+.++++|++|++++|. ++.++ .++.+++|++|++++|.+..+
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~--~l~~l~~L~~L~L~~N~i~~~------ 165 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV--MLGFLSKLEVLDLHGNEITNT------ 165 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG--GGGGCTTCCEEECTTSCCCBC------
T ss_pred cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh--HHccCCCCCEEECCCCcCcch------
Confidence 877434444 88888888888888776 57888888888888865 77765 277888888888888866543
Q ss_pred chHhhccCCCCcEEEEe
Q 000975 674 SVVELKQLSSLTILDMH 690 (1205)
Q Consensus 674 ~l~~L~~L~~L~~L~l~ 690 (1205)
..+..+++|+.|+++
T Consensus 166 --~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLT 180 (263)
T ss_dssp --TTSTTCCCCCEEEEE
T ss_pred --HHhccCCCCCEEeCC
Confidence 345666677766665
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1.5e-13 Score=148.35 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=131.9
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..+++.+++++|.+..++....+++|+.|++++|.+. .++. +.++++|++|++++|.++.+|.... ++|++|+++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 5689999999999999996569999999999999987 4555 6999999999999999999886444 999999999
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccc
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 667 (1205)
+|.++.++.++++++|++|++++|+++.+| .+..+++|++|++++|. +..+ ..+..+++|++|++++|.+...
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 999999778999999999999999999997 69999999999999976 7777 3389999999999999876543
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.8e-13 Score=142.55 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=137.1
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCCcCCC-C-ccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~ 613 (1205)
+.++..++.+. .+|..+ .++|++|++++|.++.+|.. +..+++|++|++++|.++. + ..+.++++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45677777665 677654 56899999999999988764 7899999999999999988 4 5578999999999999
Q ss_pred CCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecc
Q 000975 614 SHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP 692 (1205)
Q Consensus 614 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~ 692 (1205)
|.++.+|.. +.++++|++|++++|. +..+++..++++++|++|++++|.+..++. ..+..+++|+.|+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCC
Confidence 999988765 6899999999999965 888888878999999999999998876653 44778899999999866
Q ss_pred hhhhccccccccccccceE
Q 000975 693 DAQLLLEDLISLDLERYRI 711 (1205)
Q Consensus 693 ~~~~~~~~L~~l~L~~~~i 711 (1205)
.....++.++.+++..+.+
T Consensus 159 ~~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 159 PWDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp CBCCCTTTTHHHHHHHHHC
T ss_pred CeecCCCCHHHHHHHHHhC
Confidence 6666677788887777765
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=160.89 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=11.2
Q ss_pred CCccccceEEeecCC
Q 000975 772 EGFPRLKHLHVQNDP 786 (1205)
Q Consensus 772 ~~l~~L~~L~L~~~~ 786 (1205)
..+++|+.|++++|+
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 566788888888774
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=2e-13 Score=154.73 Aligned_cols=222 Identities=16% Similarity=0.168 Sum_probs=171.4
Q ss_pred cCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccc
Q 000975 945 FPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGRE 1024 (1205)
Q Consensus 945 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 1024 (1205)
++++++|+|++|+++.++.+.|. ++++|++|+|+++.-++.++ ...+.++++|+++.+.++++++.+...
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~----~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~----- 98 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFS----GFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPE----- 98 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSST----TCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTT-----
T ss_pred CCCCCEEEccCCcCCCcCHHHHc----CCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCch-----
Confidence 56799999999999999888776 78999999999964445553 355778899998888888888877531
Q ss_pred cccccccccccceeccccCCCccccCCCcccCCCCcceeeeccCcccccccccccccccC----CCCCCCCccccccccc
Q 000975 1025 ENLIEMVFPKLVYLSLSHLPQLSRFGIGNLVELPSLRQLSINFCPELKRFICAHAVEMSS----GGNYHGDTQALFDEKV 1100 (1205)
Q Consensus 1025 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~----~~~~~~~~~~l~~~~~ 1100 (1205)
....+++|+.|++++ +.++.++...+....++..|++.++.+++.++...+..+.. .....+.+..++....
T Consensus 99 ---~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 99 ---AFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp ---SBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred ---hhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc
Confidence 134588999999998 46777766566677788999999999999888765555432 2345566777777777
Q ss_pred ccCcceeeeecccccchhhccCCCCCCcccCccEEEecccccccccccchhHhhccCCcEEEEecCCCceeeeeccCccc
Q 000975 1101 MLPSLEELSIALMRNLRKIWHHQLASGSFSKLKVLHVEYCDELLNIFPSSMMRSLKKLEHLSVIECESLKEITEKADHRK 1180 (1205)
Q Consensus 1101 ~l~~L~~L~i~~c~~l~~l~~~~~~~~~l~sL~~L~i~~c~~L~~~lp~~~l~~l~sL~~L~i~~C~~l~~~~~~~~~~~ 1180 (1205)
..++|++|.++++..++.++...+ +.+++|+.|+++++ ++++ +|.+ .+.+|+.|.+.+|++++++|.. .
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f--~~l~~L~~LdLs~N-~l~~-lp~~---~~~~L~~L~~l~~~~l~~lP~l----~ 243 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVF--HGASGPVILDISRT-RIHS-LPSY---GLENLKKLRARSTYNLKKLPTL----E 243 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTT--TTEECCSEEECTTS-CCCC-CCSS---SCTTCCEEECTTCTTCCCCCCT----T
T ss_pred cccchhHHhhccCCcccCCCHHHh--ccCcccchhhcCCC-CcCc-cChh---hhccchHhhhccCCCcCcCCCc----h
Confidence 778899999998888888876554 45799999999985 6887 6763 4778888899999999999864 3
Q ss_pred ccccccEEEec
Q 000975 1181 AFSQSISLKLV 1191 (1205)
Q Consensus 1181 ~~~~L~~l~i~ 1191 (1205)
.+++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 57788887764
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=2.3e-13 Score=142.63 Aligned_cols=143 Identities=15% Similarity=0.268 Sum_probs=122.6
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEccCCcCCC--CccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~ 613 (1205)
+.++++++.+. .+|..+ .++|+.|++++|.|+.+|. .|..+++|++|+|++|.++. +..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888876 788765 3789999999999998865 69999999999999999987 68999999999999999
Q ss_pred CCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 614 SHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 614 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
|.++.+|.. +..+++|++|+|++|. +..+++..+..+++|++|++++|.+..++. ..+..+++|+.|+++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK------GTFSPLRAIQTMHLA 160 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH------HHHhCCCCCCEEEeC
Confidence 999999876 6889999999999965 888888789999999999999998876653 346667777766654
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=154.02 Aligned_cols=189 Identities=19% Similarity=0.144 Sum_probs=139.4
Q ss_pred cCCCcEEEccCCCCCC-CCCc---cCCCcceEEEeecCCCCCCCC---hhhhhCCCceeEEEeeCCCCCCcc-cccCCCc
Q 000975 511 RKNPTAISIPFRDISE-LPDS---LQCTRLKLFLLFTEDSSLQIP---NQFFDGMTELLVLHLTGIHFPSLP-LSLGSLI 582 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~-l~~~---~~~~~Lr~L~l~~n~~~~~~~---~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~ 582 (1205)
..+++++++++|.+.. .|.. ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+..+| ..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999998864 3443 468999999999999876544 233457999999999999998775 6789999
Q ss_pred CCcEEEccCCcCCC------CccccccccCcEEEcccCCCCccchh----ccCCCccCEEeccCCCCCCcc-ChhhhcCC
Q 000975 583 NLRTLSFDCCHLED------VARVGDLAKLEILSFRNSHIEQLPEQ----IGNLTRLKLLDLSNCSKLKVI-KPEVISRL 651 (1205)
Q Consensus 583 ~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~L~~~~~l~~~-~~~~l~~L 651 (1205)
+|++|+|++|.+.. ...++++++|++|++++|+++.+|.. +.++++|++|++++|. +... |+. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhc
Confidence 99999999998653 23457899999999999999877653 5788999999999976 6665 543 6666
Q ss_pred ---CCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEecc-----hhhhccccccccccccce
Q 000975 652 ---SRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYR 710 (1205)
Q Consensus 652 ---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~ 710 (1205)
++|++|++++|.+..++. .+. ++|+.|+++.. +....++.|+.++|++|.
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~-------~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPK-------GLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCS-------CCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred cCcCcCCEEECCCCCCCchhh-------hhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 699999999998876653 121 56777776521 112334455555555554
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.9e-13 Score=136.83 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=104.1
Q ss_pred CcceEEEeecCCCC-CCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEE
Q 000975 534 TRLKLFLLFTEDSS-LQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILS 610 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~ 610 (1205)
++|+.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777888877775 566654 47788888888888888877 678888888888888888877 45556688888888
Q ss_pred cccCCCCccc--hhccCCCccCEEeccCCCCCCccCh---hhhcCCCCCCEEEccCCcCccccC
Q 000975 611 FRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKP---EVISRLSRLNELYMGNSFTRKVEG 669 (1205)
Q Consensus 611 L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~~~---~~l~~L~~L~~L~l~~~~~~~~~~ 669 (1205)
+++|.++.+| ..+.++++|++|++++|. +..+|+ ..+..+++|++|++++|....++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8888888876 678888888888888865 677766 458888888888888887665553
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=2e-13 Score=164.62 Aligned_cols=180 Identities=22% Similarity=0.283 Sum_probs=151.2
Q ss_pred EEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC
Q 000975 517 ISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED 596 (1205)
Q Consensus 517 lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~ 596 (1205)
+.+..+.+..+.....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence 3455555555555558899999999999886 5553 6899999999999999999887 9999999999999999999
Q ss_pred CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchH
Q 000975 597 VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVV 676 (1205)
Q Consensus 597 ~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~ 676 (1205)
++.++.+++|++|+|++|.+..+| .+..|++|+.|+|++|. +..++ .++.+++|++|++++|.+..++
T Consensus 102 l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N~l~~~~-------- 169 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQISDIV-------- 169 (605)
T ss_dssp CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG--GGGSCTTCSEEECCSSCCCCCG--------
T ss_pred ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch--hhcccCCCCEEECcCCcCCCch--------
Confidence 779999999999999999999886 58999999999999975 77773 3899999999999999876543
Q ss_pred hhccCCCCcEEEEecc-----hhhhccccccccccccceEE
Q 000975 677 ELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIF 712 (1205)
Q Consensus 677 ~L~~L~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~ 712 (1205)
.+..+++|+.|+++.. ..+..+++|+.++|++|.+.
T Consensus 170 ~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 2788999999999732 33556678888899988874
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=157.11 Aligned_cols=155 Identities=24% Similarity=0.323 Sum_probs=135.5
Q ss_pred HhcCCCcEEEccCCCCCCCCCcc---CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCC
Q 000975 509 AARKNPTAISIPFRDISELPDSL---QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINL 584 (1205)
Q Consensus 509 ~~~~~~r~lsl~~~~~~~l~~~~---~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L 584 (1205)
..+..++.|++++|.+..++... .+++|+.|++++|.+. .++...|.++++|++|+|++|.++.+|. .|.++++|
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 34567899999999999887653 7999999999999998 6777777999999999999999998865 58999999
Q ss_pred cEEEccCCcCCC--CccccccccCcEEEcccCCCCccchhc----cCCCccCEEeccCCCCCCccChhhhcCCCC--CCE
Q 000975 585 RTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQI----GNLTRLKLLDLSNCSKLKVIKPEVISRLSR--LNE 656 (1205)
Q Consensus 585 r~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i----~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~--L~~ 656 (1205)
++|+|++|.+.. +..|.++.+|++|+|++|.++.+|..+ .++++|++|+|++|. +..+|...+..++. |+.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTT
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcce
Confidence 999999999987 678999999999999999999998875 679999999999965 88999887888887 488
Q ss_pred EEccCCcCc
Q 000975 657 LYMGNSFTR 665 (1205)
Q Consensus 657 L~l~~~~~~ 665 (1205)
|++++|.+.
T Consensus 194 l~l~~N~~~ 202 (361)
T 2xot_A 194 LYLHNNPLE 202 (361)
T ss_dssp EECCSSCEE
T ss_pred EEecCCCcc
Confidence 999988654
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5.9e-13 Score=158.38 Aligned_cols=138 Identities=21% Similarity=0.308 Sum_probs=117.9
Q ss_pred CCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccC
Q 000975 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 591 (1205)
.+++.|++++|.+..+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +++ +|++|+|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47899999999998888765 488999999999987 788 347899999999999999988 766 999999999
Q ss_pred CcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCcccc
Q 000975 592 CHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (1205)
Q Consensus 592 ~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 668 (1205)
|.++..+. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. ++ ++|++|++++|.+..++
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCchh
Confidence 99988333 68999999999999999986 67899999999975 777876 55 89999999999887665
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=4.6e-13 Score=140.23 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=120.7
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc--cccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP--LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~ 612 (1205)
+++++++|.+. .+|..+ ...+++|+|++|.++.++ ..|.++++|++|+|++|.++. +..|+++.+|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58999999887 688755 456789999999999884 348999999999999999998 4589999999999999
Q ss_pred cCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 613 NSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 613 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+|.++.+|.. +.++++|++|++++|. +..+++..+..+++|++|++++|.+..+.. ..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAP------GAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCT------TTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECH------HHhcCCCCCCEEEec
Confidence 9999988654 8999999999999965 888877779999999999999998876542 456677777776654
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=4.2e-14 Score=160.08 Aligned_cols=174 Identities=17% Similarity=0.238 Sum_probs=116.6
Q ss_pred cCCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCC-CcccccCCCcCCcEEE
Q 000975 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLS 588 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~ 588 (1205)
...++.+++.++.+...+... .+++|++|++++|.+........+..+++|++|++++|.+. ..|..++.+++|++|+
T Consensus 69 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 69 SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 367788888777775544333 77788888888777653312334577788888888888776 4566777788888888
Q ss_pred ccCC-cCCC---CccccccccCcEEEcccC-CCCc--cchhccCCC-ccCEEeccCCC-CCC--ccChhhhcCCCCCCEE
Q 000975 589 FDCC-HLED---VARVGDLAKLEILSFRNS-HIEQ--LPEQIGNLT-RLKLLDLSNCS-KLK--VIKPEVISRLSRLNEL 657 (1205)
Q Consensus 589 L~~~-~l~~---~~~i~~L~~L~~L~L~~~-~l~~--lp~~i~~L~-~L~~L~L~~~~-~l~--~~~~~~l~~L~~L~~L 657 (1205)
+++| .++. +..+.++++|++|++++| .++. +|..+.+++ +|++|++++|. .++ .++. .++++++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEE
Confidence 8887 4664 355777788888888888 7773 566677777 88888888764 232 2333 36677888888
Q ss_pred EccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 658 YMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 658 ~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
++++|.... ...+..+..+++|+.|+++
T Consensus 228 ~l~~~~~l~-----~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 228 DLSDSVMLK-----NDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp ECTTCTTCC-----GGGGGGGGGCTTCCEEECT
T ss_pred eCCCCCcCC-----HHHHHHHhCCCCCCEeeCC
Confidence 887775211 1122456666777777765
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=8.1e-13 Score=139.44 Aligned_cols=144 Identities=23% Similarity=0.287 Sum_probs=123.3
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCcCCC-C-ccccccccCcEEEc
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSF 611 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L 611 (1205)
..+.++.+++.+. .+|..+ .++|++|+|++|.+..+ |..+.++++|++|+|++|.+.. + ..|.++++|++|+|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567888887776 788755 48999999999999987 6779999999999999999988 4 56899999999999
Q ss_pred ccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 612 RNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 612 ~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+..++. ..+..+++|+.|++.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH------GAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH------HHHhCCCCCCEEEee
Confidence 99999999765 6899999999999965 8889876 8999999999999998876653 456778888888776
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=5.1e-14 Score=162.44 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCCcCeeeeecCCCccc-----ccchHHHHHcccCcEEEeccccc
Q 000975 831 FTNLRIINIEQCHRLKH-----LFPSFMAEKLLQLEELEVTDCKI 870 (1205)
Q Consensus 831 ~~~L~~L~l~~c~~l~~-----l~~~~~~~~l~~L~~L~l~~c~~ 870 (1205)
+++|+.|++++|. ++. ++. ....++++|++|++++|+.
T Consensus 273 ~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 273 NIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp SCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTTSBS
T ss_pred CCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccCCcC
Confidence 6778888888773 444 432 2335678888888888653
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=6.6e-14 Score=161.51 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=120.9
Q ss_pred cCCCcEEEccCCCCCCC-----CCcc-CCCcceEEEeecCC---CCCCCChhh------hhCCCceeEEEeeCCCCCC--
Q 000975 511 RKNPTAISIPFRDISEL-----PDSL-QCTRLKLFLLFTED---SSLQIPNQF------FDGMTELLVLHLTGIHFPS-- 573 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l-----~~~~-~~~~Lr~L~l~~n~---~~~~~~~~~------~~~l~~Lr~L~Ls~~~i~~-- 573 (1205)
..++++|++++|.+... +..+ .+++|++|++++|. +.+.+|..+ +..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 45688888888876542 2222 67888888888863 334455544 4678888888888888875
Q ss_pred ---cccccCCCcCCcEEEccCCcCCC--Ccc----cccc---------ccCcEEEcccCCCC--ccc---hhccCCCccC
Q 000975 574 ---LPLSLGSLINLRTLSFDCCHLED--VAR----VGDL---------AKLEILSFRNSHIE--QLP---EQIGNLTRLK 630 (1205)
Q Consensus 574 ---lp~~i~~L~~Lr~L~L~~~~l~~--~~~----i~~L---------~~L~~L~L~~~~l~--~lp---~~i~~L~~L~ 630 (1205)
+|..+.++++|++|+|++|.+.. +.. +..+ ++|++|++++|.++ .+| ..+.++++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 67778888888888888888764 223 3334 78888888888886 445 4677788888
Q ss_pred EEeccCCCCCCc-----cChhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 631 LLDLSNCSKLKV-----IKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 631 ~L~L~~~~~l~~-----~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+|++++|. +.. +.+..+..+++|++|++++|.+.... .......+..+++|+.|+++
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECT
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECC
Confidence 88888865 542 22323778888888888888763100 00111456677777777775
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=3.3e-13 Score=131.89 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=68.1
Q ss_pred CcceEEEeecCCCC-CCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEE
Q 000975 534 TRLKLFLLFTEDSS-LQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILS 610 (1205)
Q Consensus 534 ~~Lr~L~l~~n~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~ 610 (1205)
++|+.|++++|.+. +.+|. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. |..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 34443 235556666666666666555 445566666666666666554 23444466666666
Q ss_pred cccCCCCccc--hhccCCCccCEEeccCCCCCCccCh---hhhcCCCCCCEEEc
Q 000975 611 FRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKP---EVISRLSRLNELYM 659 (1205)
Q Consensus 611 L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~~~---~~l~~L~~L~~L~l 659 (1205)
+++|.++.+| ..++.+++|++|++++|. +..+++ ..++.+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666665543 455566666666666643 454444 33555566666554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=8.3e-13 Score=132.08 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=117.0
Q ss_pred hcCCCcEEEccCCCCC--CCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCC-cccccCCCcCCc
Q 000975 510 ARKNPTAISIPFRDIS--ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPLSLGSLINLR 585 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~Lr 585 (1205)
.+.+++++++++|.+. .+|..+ .+++|+.|++++|.+.. + ..|..+++|++|++++|.+.. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3568999999999998 888875 89999999999999874 4 446899999999999999997 777788899999
Q ss_pred EEEccCCcCCC-C--ccccccccCcEEEcccCCCCccch----hccCCCccCEEeccCCCCCCccCh
Q 000975 586 TLSFDCCHLED-V--ARVGDLAKLEILSFRNSHIEQLPE----QIGNLTRLKLLDLSNCSKLKVIKP 645 (1205)
Q Consensus 586 ~L~L~~~~l~~-~--~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~L~~~~~l~~~~~ 645 (1205)
+|++++|.++. + ..++.+++|++|++++|.++.+|. .+..+++|++|++++|. +..+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99999999988 4 789999999999999999999886 78999999999999976 666654
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=3.2e-12 Score=152.11 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=128.6
Q ss_pred cCCCcEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEcc
Q 000975 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 590 (1205)
..+++.|++++|.+..+| ..+++|++|++++|.+.+ +|. + .+ +|++|+|++|.++.+|. .+++|++|+|+
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 357999999999999999 458999999999999985 887 3 44 99999999999999988 68999999999
Q ss_pred CCcCCCCccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCC-------CEEEccCCc
Q 000975 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL-------NELYMGNSF 663 (1205)
Q Consensus 591 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L-------~~L~l~~~~ 663 (1205)
+|.++..+. .+++|++|++++|.++.+|. +. ++|++|+|++|. ++.+|. +.. +| ++|++++|.
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCc
Confidence 999988333 68899999999999999998 66 999999999975 888876 544 67 999999998
Q ss_pred CccccCCCccchHhhccCCCCcEEEEe
Q 000975 664 TRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 664 ~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+..++ ..+..+++|+.|+++
T Consensus 219 l~~lp-------~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 219 ITHIP-------ENILSLDPTCTIILE 238 (571)
T ss_dssp CCCCC-------GGGGGSCTTEEEECC
T ss_pred ceecC-------HHHhcCCCCCEEEee
Confidence 88776 456668888888776
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=131.91 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=94.9
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccC
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNS 614 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~ 614 (1205)
+++++++|.+. .+|..+ .++|++|++++|.++.+|..|.++++|++|+|++|.++. +..|.++.+|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35566666555 566544 356788888888888888778888888888888888877 356888888888888888
Q ss_pred CCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 615 HIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 615 ~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
.++.+|. .+..+++|++|+|++|. +..+|+..+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 8887754 57888888888888855 77888777888888888888887543
No 126
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.37 E-value=8.8e-14 Score=125.83 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHhHHHHHHhhhhhhhcccc
Q 000975 13 IASKVVELLFDPIREEISYVCKYQSNVKELKNVGERVEQAVKHADRQG-DDIFSDVQEWLTKFDEWTKRVGNAVVEDEGE 91 (1205)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~~~~~~~~~~ed~~~~~~~ 91 (1205)
+++.++++|.+.+.+|+.++.++++++++|+++|+.|+++|++|+++. ...++.++.|+++|||++| |+||++|+|.+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaY-D~ED~iD~f~~ 80 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSY-VIEDVVDKFLV 80 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 455677788888899999999999999999999999999999998873 3468899999999999999 99999999865
Q ss_pred c
Q 000975 92 D 92 (1205)
Q Consensus 92 ~ 92 (1205)
.
T Consensus 81 ~ 81 (115)
T 3qfl_A 81 Q 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.3e-12 Score=131.69 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=75.6
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc--cCCCcCCcEEEccCCcCCC--CccccccccCcEEEcc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS--LGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~ 612 (1205)
+++++++|.+. .+|..++ .+|++|++++|.+..++.. ++.+++|++|+|++|.++. |..|+++.+|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34555555443 4554332 2566666666666666542 6666666666666666665 4566666666777777
Q ss_pred cCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 613 NSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 613 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+|+++.+|.. +.++++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666655433 6667777777777654 55555555667777777777766543
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=8.9e-14 Score=166.72 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=93.3
Q ss_pred ceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCC
Q 000975 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 638 (1205)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++. |..|+++++|++|+|++|.++.+| .+++|++|++|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 47788888888888886 8888888888888888887 788888888888888888888888 78888888888888865
Q ss_pred CCCccC-hhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEE
Q 000975 639 KLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILD 688 (1205)
Q Consensus 639 ~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 688 (1205)
++.++ +..++.+++|++|++++|.+...+.. ...-+..+++|+.|+
T Consensus 520 -l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 -LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEMLPSVSSIL 566 (567)
T ss_dssp -CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHCTTCSEEE
T ss_pred -CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHCcccCccC
Confidence 67763 44488888888888888877655421 112234466676664
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.4e-12 Score=127.42 Aligned_cols=130 Identities=22% Similarity=0.184 Sum_probs=110.1
Q ss_pred CCCceeEEEeeCCCCC--CcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEcccCCCCc-cchhccCCCccCEEe
Q 000975 557 GMTELLVLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQ-LPEQIGNLTRLKLLD 633 (1205)
Q Consensus 557 ~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~ 633 (1205)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++....++++++|++|++++|.++. +|..+.++++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4578999999999998 8899899999999999999999888889999999999999999997 888888899999999
Q ss_pred ccCCCCCCccC-hhhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 634 LSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 634 L~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
+++|. ++.++ +..++.+++|++|++++|.+..++. .....+..+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLND---YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---HHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHH---HHHHHHHHCCCcccccCC
Confidence 99976 77764 2458999999999999998765441 111357778888877653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=5.1e-12 Score=129.13 Aligned_cols=125 Identities=17% Similarity=0.276 Sum_probs=110.2
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++++++.+..+|..+. .+++.|++++|.+....+..+|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 678999999999998653 38999999999997444445679999999999999999987 7789999999999999999
Q ss_pred CCC--CccccccccCcEEEcccCCCCcc-chhccCCCccCEEeccCCCCC
Q 000975 594 LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKL 640 (1205)
Q Consensus 594 l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l 640 (1205)
++. +..|.++++|++|++++|+++.+ |..+..+++|++|++++|...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 998 46699999999999999999966 778999999999999997633
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.9e-12 Score=130.49 Aligned_cols=130 Identities=16% Similarity=0.119 Sum_probs=91.6
Q ss_pred cCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-Ccc-ccccccCcE
Q 000975 531 LQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VAR-VGDLAKLEI 608 (1205)
Q Consensus 531 ~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~-i~~L~~L~~ 608 (1205)
.++++|+.|++++|.+. .+|. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. |.. ++.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 36667777777777776 4543 323334788888888887776 567778888888888888776 433 477788888
Q ss_pred EEcccCCCCccch--hccCCCccCEEeccCCCCCCccChh---hhcCCCCCCEEEccCCcC
Q 000975 609 LSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPE---VISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 609 L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~~~~---~l~~L~~L~~L~l~~~~~ 664 (1205)
|++++|.++.+|. .+..+++|++|++++|. +..+|.. .++.+++|++|++++|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888777776 67777888888887754 5566543 467777777777776643
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=2.1e-12 Score=160.05 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=101.5
Q ss_pred CCCcEEEccCCCCCCCCCcc-CCCcceEEEee-----cCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCc
Q 000975 512 KNPTAISIPFRDISELPDSL-QCTRLKLFLLF-----TEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLR 585 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~-----~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 585 (1205)
..++++++.++.+...+... ....|+.+.+. .|.+ .++...|..+..|++|+|++|.+..+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 45788888888877665443 33334443332 2333 2566778999999999999999999999999999999
Q ss_pred EEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcC
Q 000975 586 TLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (1205)
Q Consensus 586 ~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 664 (1205)
+|+|++|.++. |..|++|++|++|+|++|.++.+|..+++|++|++|+|++|. ++.+|.. |++|++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence 99999999988 888999999999999999999999999999999999999975 8899877 99999999999999977
Q ss_pred cc
Q 000975 665 RK 666 (1205)
Q Consensus 665 ~~ 666 (1205)
..
T Consensus 329 ~~ 330 (727)
T 4b8c_D 329 EK 330 (727)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=7.1e-13 Score=151.12 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=63.1
Q ss_pred ceEEEeecCCCCCCCCh----hhhhCCC-ceeEEEeeCCCCCCc-ccccCCC-----cCCcEEEccCCcCCC--Ccc---
Q 000975 536 LKLFLLFTEDSSLQIPN----QFFDGMT-ELLVLHLTGIHFPSL-PLSLGSL-----INLRTLSFDCCHLED--VAR--- 599 (1205)
Q Consensus 536 Lr~L~l~~n~~~~~~~~----~~~~~l~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~Lr~L~L~~~~l~~--~~~--- 599 (1205)
|+.|++++|.+. ..+. ..|.+++ +|++|+|++|.+... +..+..+ ++|++|+|++|.++. +..
T Consensus 24 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 666666666554 2332 3345555 566666666665533 3333332 566666666666554 222
Q ss_pred -cccc-ccCcEEEcccCCCCccch-----hccCC-CccCEEeccCCCCCCccCh----hhhcCCC-CCCEEEccCCcCc
Q 000975 600 -VGDL-AKLEILSFRNSHIEQLPE-----QIGNL-TRLKLLDLSNCSKLKVIKP----EVISRLS-RLNELYMGNSFTR 665 (1205)
Q Consensus 600 -i~~L-~~L~~L~L~~~~l~~lp~-----~i~~L-~~L~~L~L~~~~~l~~~~~----~~l~~L~-~L~~L~l~~~~~~ 665 (1205)
+..+ ++|++|++++|.++..+. .+..+ ++|++|++++|. ++.... ..+..++ +|++|++++|.+.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2233 566666666665554432 12232 456666666643 332111 1123333 5666666655443
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=4.8e-13 Score=152.53 Aligned_cols=155 Identities=10% Similarity=0.219 Sum_probs=119.2
Q ss_pred hcCCCcEEEccCCCCCCCCC-----cc-CCC-cceEEEeecCCCCCCCChhhhhCC-----CceeEEEeeCCCCCCcc-c
Q 000975 510 ARKNPTAISIPFRDISELPD-----SL-QCT-RLKLFLLFTEDSSLQIPNQFFDGM-----TELLVLHLTGIHFPSLP-L 576 (1205)
Q Consensus 510 ~~~~~r~lsl~~~~~~~l~~-----~~-~~~-~Lr~L~l~~n~~~~~~~~~~~~~l-----~~Lr~L~Ls~~~i~~lp-~ 576 (1205)
...++++|++++|.+...+. .+ .++ +|++|++++|.+....+.. |..+ ++|++|+|++|.++..+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEECcCCcCChHHHH
Confidence 45569999999999988764 22 677 8999999999987544443 3443 99999999999998543 3
Q ss_pred c----cCCC-cCCcEEEccCCcCCC--Ccc----ccc-cccCcEEEcccCCCC-----ccchhccCCC-ccCEEeccCCC
Q 000975 577 S----LGSL-INLRTLSFDCCHLED--VAR----VGD-LAKLEILSFRNSHIE-----QLPEQIGNLT-RLKLLDLSNCS 638 (1205)
Q Consensus 577 ~----i~~L-~~Lr~L~L~~~~l~~--~~~----i~~-L~~L~~L~L~~~~l~-----~lp~~i~~L~-~L~~L~L~~~~ 638 (1205)
. +..+ ++|++|+|++|.++. +.. +.. ..+|++|++++|.++ .++..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 5555 899999999999877 233 334 369999999999888 5566677776 99999999976
Q ss_pred CCCccChhh----hcCC-CCCCEEEccCCcCcc
Q 000975 639 KLKVIKPEV----ISRL-SRLNELYMGNSFTRK 666 (1205)
Q Consensus 639 ~l~~~~~~~----l~~L-~~L~~L~l~~~~~~~ 666 (1205)
++...+.. +... ++|++|++++|.+..
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 66665533 4455 699999999997663
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.5e-11 Score=125.59 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=108.7
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 593 (1205)
+.++++++.+..+|..+ .++|+.|++++|.+. .+|. .|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57889999999999765 468999999999997 7884 5699999999999999999886 569999999999999999
Q ss_pred CCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCC
Q 000975 594 LED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 594 l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 638 (1205)
++. +..|.++++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 988 46799999999999999999999875 8899999999999976
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=1.5e-10 Score=133.74 Aligned_cols=296 Identities=14% Similarity=0.115 Sum_probs=180.3
Q ss_pred cccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
..++||+++++.+.+++. ....+.+.|+|++|+||||+|+.+++..... +.-..++|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568999999999999885 2445678999999999999999999876432 11235688888888888999999
Q ss_pred HHHHhCCCCCCC-CCHHHHHHHHHHHHHc-CCeEEEEEccccccccc----ccccCCCCCCCccccCCCCCeEEEEecCc
Q 000975 224 IADQLGLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQINL----DDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (1205)
Q Consensus 224 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~----~~~~~~~~~~~~~~~~~~~~s~ilvTTr~ 297 (1205)
++.+++...... .+..+....+.+.+.. +++.+|||||++..... +.+...+.. ....+...+..+|+||+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~--~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI--NQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG--GGCC-----CEEEEECSC
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc--hhhcCCCceEEEEEEECC
Confidence 999997654332 1345556667766643 46899999999875321 111110000 000000345678888876
Q ss_pred hhHH-----hhcCC-CCceEEccCCChHhHHHHHHHHhCC-CCCCCchHHHHHHHHHhcC---CCh-HHHHHHHHHhc--
Q 000975 298 QHVL-----RINMS-NPRIFSISTLADGEAKSLFEKIVGD-SAKESDCRAIGVEIVGKCG---GLP-IAVSTIANALK-- 364 (1205)
Q Consensus 298 ~~v~-----~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glP-Lai~~~~~~l~-- 364 (1205)
.... ..... ....+.+++++.++..+++...+.. .....-.+++.+.|++.++ |.| .|+.++..+..
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 6321 10011 1247899999999999999988631 0011112345677888887 999 33333333221
Q ss_pred ---CC---CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhc-ccCCCCccCHHHHHHHHHH--c
Q 000975 365 ---GQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCG-LLNDGSRLPIDDLIRYVFA--L 435 (1205)
Q Consensus 365 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s-~fp~~~~i~~~~li~~w~a--~ 435 (1205)
+. +.+.+..+++... ...+.-++..++++.+..+..++ .+..+..+....+.+.... +
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 11 4455555554432 22455678899998888877776 4433235656655554321 1
Q ss_pred ccccccchhHHHHHHHHHHHHHhhcccccccc
Q 000975 436 DNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (1205)
Q Consensus 436 g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 467 (1205)
. .-.... +...+.++++.|...+++..
T Consensus 324 ~-~~~~~~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 324 T-LGLEHV----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp H-TTCCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred h-cCCCCC----CHHHHHHHHHHHHhCCCeEE
Confidence 1 000011 12345567888888888865
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=5.6e-12 Score=126.99 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=109.1
Q ss_pred hhCCCceeEEEeeCCCCCCcccccCCCc-CCcEEEccCCcCCCCccccccccCcEEEcccCCCCccchhc-cCCCccCEE
Q 000975 555 FDGMTELLVLHLTGIHFPSLPLSLGSLI-NLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQI-GNLTRLKLL 632 (1205)
Q Consensus 555 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~-~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L 632 (1205)
|..+.+|++|++++|.++.+|. +..+. +|++|++++|.++....++++++|++|++++|.++.+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4678899999999999998865 55555 99999999999988788999999999999999999998665 899999999
Q ss_pred eccCCCCCCccCh-hhhcCCCCCCEEEccCCcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 633 DLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 633 ~L~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
++++|. +..+|. ..++.+++|++|++++|.+..++. .....+..+++|+.|+++
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKH---YRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTT---HHHHHHHHCTTCSEETTE
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHh---HHHHHHHHCCccceeCCC
Confidence 999975 788875 348899999999999998875542 111236777778777765
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4.1e-11 Score=120.79 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=82.7
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCCcCCC-C-ccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~ 613 (1205)
+.++++++.+. .+|..+ .++|++|++++|.++.+|.. ++.+++|++|++++|.++. + ..++++++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555544 455433 35667777777777766543 5677777777777777766 3 4467777777777777
Q ss_pred CCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 614 SHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 614 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
|.++.+|.. +.++++|++|++++|. ++.+|+..+..+++|++|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 777776654 5677777777777754 66777765677778888888777554
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=1.9e-10 Score=132.49 Aligned_cols=244 Identities=16% Similarity=0.129 Sum_probs=158.0
Q ss_pred cccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-----C-CcEEEEEEecCCC-CHHHH
Q 000975 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-----L-FDVVVDAEVTHTP-DWKEI 220 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-----~-f~~~~wv~~~~~~-~~~~~ 220 (1205)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 468999999999987775 33456899999999999999999998864321 1 3467888887766 88888
Q ss_pred HHHHHHHh-CCCCCC-CCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccc-cCCCCCCCccccCCCCCeEEEEec
Q 000975 221 CGRIADQL-GLEIVR-PDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDI-GIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 221 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~-~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
+..++..+ +..... .....+....+.+.+.. ++.+|||||++.... +... ...+.. ...+..||+||
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~-------~~~~~~iI~~t 171 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLR-------SDANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHT-------SSSCEEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhc-------CCcceEEEEEE
Confidence 88988887 332211 11234556667766654 444999999987532 1111 111111 11577899999
Q ss_pred CchhHH-----hhcCCCCceEEccCCChHhHHHHHHHHhCC-CCCCCchHHHHHHHHHhcC---CChH-HHHHHHHHh--
Q 000975 296 RDQHVL-----RINMSNPRIFSISTLADGEAKSLFEKIVGD-SAKESDCRAIGVEIVGKCG---GLPI-AVSTIANAL-- 363 (1205)
Q Consensus 296 r~~~v~-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l-- 363 (1205)
+..... .....-...+++++++.++..+++.+++.. .....-.+++.+.|++.++ |.|. |+.++..+.
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 876321 100111238999999999999999998631 1111122355677888887 8886 444443332
Q ss_pred c-C--C-CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhcc
Q 000975 364 K-G--Q-STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGL 416 (1205)
Q Consensus 364 ~-~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~ 416 (1205)
. + . +.+.+..+++... ...+..++..|+++.+..+..++.
T Consensus 252 a~~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1 2 4566666665432 234566788899888888777776
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=4.7e-11 Score=120.36 Aligned_cols=122 Identities=21% Similarity=0.335 Sum_probs=98.5
Q ss_pred cEEEccCCCCCCCCCccCCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccc-cCCCcCCcEEEccCCc
Q 000975 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCH 593 (1205)
Q Consensus 515 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~ 593 (1205)
+.++++++.+..+|... .++|+.|++++|.+. .++...|..+++|++|++++|.++.+|.. ++.+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 56778888888887544 368888898888887 56777778888899999998888887654 6888889999999888
Q ss_pred CCC-C-ccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCC
Q 000975 594 LED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 594 l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 638 (1205)
++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 887 3 4578888899999988888888766 4778889999988876
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=1.5e-13 Score=141.68 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=68.6
Q ss_pred hhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-CccccccccCcEEEcccCCCCccchhccCCCccCEEe
Q 000975 555 FDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLD 633 (1205)
Q Consensus 555 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 633 (1205)
|..+++|++|++++|.+..+| .+.++++|++|++++|.+.. |..++.+++|++|++++|.++.+| .+.++++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 466666666666666666666 56666666666666666666 555555666666666666666665 466666666666
Q ss_pred ccCCCCCCccCh-hhhcCCCCCCEEEccCCcCc
Q 000975 634 LSNCSKLKVIKP-EVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 634 L~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+++|. +..++. ..+..+++|++|++++|.+.
T Consensus 122 l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 122 MSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 66643 555443 33666666777766666543
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=8e-10 Score=127.58 Aligned_cols=292 Identities=15% Similarity=0.105 Sum_probs=181.0
Q ss_pred cccCCChHHHHHHHHHhcc----CCcc--EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLRD----SNVN--MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
..++||+.+++.+.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 4689999999999988863 3334 899999999999999999998875321 23568888888888889999999
Q ss_pred HHhCCCCCCC-CCHHHHHHHHHHHHHc-CCeEEEEEccccccc--ccccccCCCCCCCccccCC--CCCeEEEEecCchh
Q 000975 226 DQLGLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDN--QGRWTLLLASRDQH 299 (1205)
Q Consensus 226 ~~l~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~--~~~s~ilvTTr~~~ 299 (1205)
..++...... ....+....+.+.+.. +++.+|||||++... .+..+...+.. .+. ..+..||++|+...
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~-----~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE-----ADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC-----HHHHSSCCEEEEEEESSTH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh-----CCCCCcCCEEEEEEECCch
Confidence 9987654322 2445555666665543 468899999998752 22222111110 000 14677888887764
Q ss_pred HHhhcCC-------CCceEEccCCChHhHHHHHHHHhCC-CCCCCchHHHHHHHHHhc---------CCChHHHHHH-HH
Q 000975 300 VLRINMS-------NPRIFSISTLADGEAKSLFEKIVGD-SAKESDCRAIGVEIVGKC---------GGLPIAVSTI-AN 361 (1205)
Q Consensus 300 v~~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~glPLai~~~-~~ 361 (1205)
... ... ....+++++++.++..+++...+.. .....-.+++...|++.+ +|.|-.+..+ -.
T Consensus 171 ~~~-~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 171 VLN-NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHH-TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred HHH-HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 432 111 1237999999999999999988632 001122356778899999 7887443333 22
Q ss_pred Hhc-----CCCchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhcccC---CCCccCHHHHHHHHH
Q 000975 362 ALK-----GQSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLN---DGSRLPIDDLIRYVF 433 (1205)
Q Consensus 362 ~l~-----~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp---~~~~i~~~~li~~w~ 433 (1205)
+.. +...-.++++...+.... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+.
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 221 222222333322222111 12334557788998888888777654 222566666665543
Q ss_pred H----cccccccchhHHHHHHHHHHHHHhhcccccccc
Q 000975 434 A----LDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (1205)
Q Consensus 434 a----~g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 467 (1205)
. .| ... . ....+.+++++|...+++..
T Consensus 320 ~~~~~~~-~~~-~-----~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 320 IVCEEYG-ERP-R-----VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHTT-CCC-C-----CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHcC-CCC-C-----CHHHHHHHHHHHHhCCCeEE
Confidence 2 12 111 0 12345567888888999865
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=2.3e-10 Score=132.07 Aligned_cols=290 Identities=13% Similarity=0.112 Sum_probs=174.6
Q ss_pred cccCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC-CcEEEEEEecCCCCHHHHHHHHHH
Q 000975 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL-FDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
..|+||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999886 344668999999999999999999988753211 235788888777778888888888
Q ss_pred HhCCCCCCC-CCHHHHHHHHHHHHHc-CCeEEEEEccccccccc------ccccCCCCCCCccccCCCCCeEEEEecCch
Q 000975 227 QLGLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQINL------DDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (1205)
Q Consensus 227 ~l~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~------~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~ 298 (1205)
.++...... .+..+....+.+.+.. +++.+|||||++..... ..+...... . ...+..+|+||+..
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~-----~-~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSE-----V-NKSKISFIGITNDV 173 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHS-----C-CC--EEEEEEESCG
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhh-----c-CCCeEEEEEEECCC
Confidence 886644321 1345556666666654 35899999999875321 111110000 0 13456778888766
Q ss_pred hHHhh------cCCCCceEEccCCChHhHHHHHHHHhCCC-CCCCchHHHHHHHHHhcC---CChHH-HHHHHHHhc---
Q 000975 299 HVLRI------NMSNPRIFSISTLADGEAKSLFEKIVGDS-AKESDCRAIGVEIVGKCG---GLPIA-VSTIANALK--- 364 (1205)
Q Consensus 299 ~v~~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~~~---glPLa-i~~~~~~l~--- 364 (1205)
..... ..-....+++++++.++..+++.+.+... ....-..++...|++.++ |.|.. +.++.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 43210 01112589999999999999999876310 111223456677888887 99974 333332221
Q ss_pred --CC---CchHHHHHHHHHHhcCCCcccccccchhhHHhhhhcCcHHHHHHHHHhcccCC-C-CccCHHHHHHHHH--Hc
Q 000975 365 --GQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLND-G-SRLPIDDLIRYVF--AL 435 (1205)
Q Consensus 365 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~f~~~s~fp~-~-~~i~~~~li~~w~--a~ 435 (1205)
+. +.+.++.+++... ...+.-.+..+|+..+..+..++.+.+ + ..+....+.+... ++
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 11 3344444444322 234556677888888877777764321 1 2344444433321 11
Q ss_pred --ccccccchhHHHHHHHHHHHHHhhcccccccc
Q 000975 436 --DNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (1205)
Q Consensus 436 --g~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 467 (1205)
| .. .. ....+.++++.|...+++..
T Consensus 321 ~~g-~~--~~----~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 321 KLG-VE--AV----TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHT-CC--CC----CHHHHHHHHHHHHHHTSEEE
T ss_pred hcC-CC--CC----CHHHHHHHHHHHHhCCCEEE
Confidence 1 10 00 11234456777888888854
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=3.7e-11 Score=144.03 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=90.7
Q ss_pred ceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccccccCcEEEcccCC
Q 000975 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSH 615 (1205)
Q Consensus 536 Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~ 615 (1205)
|+.|++++|.+. .+|. |..+++|++|+|++|.++.+|..|+++++|++|+|++|.++.++.++++++|++|+|++|.
T Consensus 443 L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCC-CCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 566677777665 3564 5778888888888888888888888888888888888888874478888888888888888
Q ss_pred CCcc--chhccCCCccCEEeccCCCCCCccChh---hhcCCCCCCEEEc
Q 000975 616 IEQL--PEQIGNLTRLKLLDLSNCSKLKVIKPE---VISRLSRLNELYM 659 (1205)
Q Consensus 616 l~~l--p~~i~~L~~L~~L~L~~~~~l~~~~~~---~l~~L~~L~~L~l 659 (1205)
++.+ |..+++|++|++|++++|. +...|+. .+..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 8877 7788888888888888865 6665543 2334778887753
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=1.4e-11 Score=152.66 Aligned_cols=141 Identities=22% Similarity=0.250 Sum_probs=108.2
Q ss_pred CCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC-Cc
Q 000975 521 FRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VA 598 (1205)
Q Consensus 521 ~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~ 598 (1205)
.|.+...+..+ .+++|+.|++++|.+. .+|..+| ++++|++|+|++|.|+.+|..|++|++|++|+|++|.|+. |.
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp ------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred ccceecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh
Confidence 34444334434 7889999999999987 7888875 7999999999999999999999999999999999999988 88
Q ss_pred cccccccCcEEEcccCCCCccchhccCCCccCEEeccCCCCCCccChhhhcCCCC-CCEEEccCCcC
Q 000975 599 RVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSR-LNELYMGNSFT 664 (1205)
Q Consensus 599 ~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~-L~~L~l~~~~~ 664 (1205)
.|++|.+|++|+|++|.++.+|..|++|++|++|+|++|. +...++..+..+.. +..|++++|.+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcc
Confidence 8999999999999999999999999999999999999976 66555554543321 11244555543
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=1.1e-12 Score=135.17 Aligned_cols=142 Identities=21% Similarity=0.236 Sum_probs=117.3
Q ss_pred CCcEEEccCC--CCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEc
Q 000975 513 NPTAISIPFR--DISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (1205)
Q Consensus 513 ~~r~lsl~~~--~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 589 (1205)
.++...+.+. .++.+|..+ .+++|++|++++|.+.. +| .+.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3455555543 456666555 89999999999999874 77 468999999999999999999998888999999999
Q ss_pred cCCcCCCCccccccccCcEEEcccCCCCccch--hccCCCccCEEeccCCCCCCccCh----------hhhcCCCCCCEE
Q 000975 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKP----------EVISRLSRLNEL 657 (1205)
Q Consensus 590 ~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~~~----------~~l~~L~~L~~L 657 (1205)
++|.++.++.++++++|++|++++|.++.+|. .+.++++|++|++++|. +...++ ..+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999995589999999999999999998875 78999999999999975 443322 236778888888
Q ss_pred E
Q 000975 658 Y 658 (1205)
Q Consensus 658 ~ 658 (1205)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=5.2e-10 Score=117.98 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=119.2
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
.+.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHH
Confidence 45556778999999999999998665556899999999999999999987642221123344554444443333222211
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhHH-hh
Q 000975 227 QLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-RI 303 (1205)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-~~ 303 (1205)
...... ....++.+||+||++... .++.+...+.. ...+.++|+||+..... ..
T Consensus 92 ~~~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-------~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 92 FARTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM-------YSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp HHTSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCHH
T ss_pred HhcccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh-------cCCCCeEEEEeCChhhcCHH
Confidence 111100 012478899999998753 22223222211 24567888888776422 10
Q ss_pred cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 304 NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 304 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
-......+++.+++.++..+++.+.+...... -.++....|++.++|.|..+..+
T Consensus 149 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12234489999999999999999887321111 22456778999999999865443
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=5e-10 Score=120.17 Aligned_cols=201 Identities=13% Similarity=0.167 Sum_probs=118.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.+.....++||+.+++.+..++.... .+.+.|+|++|+||||+|+.+++.......+.. ......... ..+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~ 90 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIE 90 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHh
Confidence 44556679999999999999987543 357899999999999999999987653211100 000000000 0000
Q ss_pred HHh-----CCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEcccccc--cccccccCCCCCCCccccCCCCCeEEEEe
Q 000975 226 DQL-----GLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 226 ~~l-----~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
... ....... ...+....+.+.+. .+++.+||+||++.. ..++.+...+.. ...+..+|+|
T Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-------~~~~~~~i~~ 162 (250)
T 1njg_A 91 QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLA 162 (250)
T ss_dssp TTCCSSEEEEETTCG-GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-------CCTTEEEEEE
T ss_pred ccCCcceEEecCccc-ccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc-------CCCceEEEEE
Confidence 000 0000000 11111222222211 246799999999874 233333222222 2457788888
Q ss_pred cCchhHH-hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHh
Q 000975 295 SRDQHVL-RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (1205)
Q Consensus 295 Tr~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 363 (1205)
|+..... .........+++++++.+|..+++.+.+..... .-.++....|++.++|.|..+..+...+
T Consensus 163 t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765422 111233568999999999999999988732211 1224567899999999999887766544
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=1.8e-10 Score=115.19 Aligned_cols=101 Identities=22% Similarity=0.360 Sum_probs=82.1
Q ss_pred eEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCC
Q 000975 562 LVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 562 r~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 638 (1205)
+.++++++.+..+|..+. .+|++|+|++|.++. +..|+++++|++|+|++|+++.+|.. +.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887664 788888888888877 46788888888888888888888765 4788888888888854
Q ss_pred CCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 639 KLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 639 ~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+..+|+..++.+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77888777888888999988888665
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=2.3e-10 Score=114.03 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=83.2
Q ss_pred ceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccC
Q 000975 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSN 636 (1205)
Q Consensus 560 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 636 (1205)
..++++++++.++.+|..+. .+|++|+|++|.++. +..|+++++|++|+|++|+++.+|.. +.++++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34678888888888887663 788888888888877 46688888888888888888888765 57888899999988
Q ss_pred CCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 637 CSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 637 ~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
|. ++.+++..+.++++|++|++++|.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 64 78888777888889999998888654
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=1e-09 Score=109.55 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=72.9
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCcCCC-C-ccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~ 613 (1205)
+.+++++|.+. .+|..+ .++|++|+|++|.++.+ |..|+++++|++|+|++|.++. | ..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56666666664 666654 36778888888888776 5567788888888888888777 4 3467788888888888
Q ss_pred CCCCccchh-ccCCCccCEEeccCCC
Q 000975 614 SHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 614 ~~l~~lp~~-i~~L~~L~~L~L~~~~ 638 (1205)
|+++.+|.. +.++++|++|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 888887765 7788888888888865
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.8e-09 Score=107.52 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=67.1
Q ss_pred eEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-ccccCCCcCCcEEEccCCcCCC-C-ccccccccCcEEEccc
Q 000975 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (1205)
Q Consensus 537 r~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~ 613 (1205)
+.+++++|.+. .+|..+ .++|++|+|++|.|+.+ |..|.++++|++|+|++|.++. + ..|.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45566666554 455543 35677777777777766 4557777777777777777776 3 4467777777777777
Q ss_pred CCCCccchh-ccCCCccCEEeccCCC
Q 000975 614 SHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 614 ~~l~~lp~~-i~~L~~L~~L~L~~~~ 638 (1205)
|+++.+|.. +.++++|++|+|++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777777654 6777777777777765
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=5.4e-09 Score=117.07 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=119.7
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
..|..+..++||+..++.+.+++.....+.+.|+|++|+||||+|+.+++..........+++++.+.......+ +.++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 345566789999999999999998666555899999999999999999988642111123455554443333222 2222
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhHH-h
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-R 302 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~-~ 302 (1205)
+.+..... .+..+++.++|+||++... .++.+...+.. ...++++|+||+...-. .
T Consensus 94 ~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------~~~~~~~il~~~~~~~l~~ 152 (323)
T 1sxj_B 94 KHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMEL-------YSNSTRFAFACNQSNKIIE 152 (323)
T ss_dssp HHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-------TTTTEEEEEEESCGGGSCH
T ss_pred HHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhc-------cCCCceEEEEeCChhhchh
Confidence 21110000 0002468899999998752 23333222211 24567888888765321 1
Q ss_pred hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHHHHHHH
Q 000975 303 INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTIANA 362 (1205)
Q Consensus 303 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~~ 362 (1205)
.-......+++.+++.++..+++.+.+..... .-.++....|++.++|.|. |+..+...
T Consensus 153 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 153 PLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11233458999999999999999987632111 1224567889999999994 45554433
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=3e-09 Score=119.21 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=120.8
Q ss_pred cCCCcEEEccCCCCC--------------------CCCCcc--C--------CCcceEEEeecCCCCCCCChhhhhCCCc
Q 000975 511 RKNPTAISIPFRDIS--------------------ELPDSL--Q--------CTRLKLFLLFTEDSSLQIPNQFFDGMTE 560 (1205)
Q Consensus 511 ~~~~r~lsl~~~~~~--------------------~l~~~~--~--------~~~Lr~L~l~~n~~~~~~~~~~~~~l~~ 560 (1205)
..+++.|++++|.+. .+|... + |++|+.+.+.+ .+. .++...|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 456778888777766 333333 5 78888888887 554 678888888888
Q ss_pred eeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcC----CCC--ccc---------------------------------
Q 000975 561 LLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHL----EDV--ARV--------------------------------- 600 (1205)
Q Consensus 561 Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l----~~~--~~i--------------------------------- 600 (1205)
|+.|++++|.+..++ ..|.++.++.++.+..... ... ..|
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 888888888877664 3477777777666554210 000 000
Q ss_pred -----------------cccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCC-EEEccC
Q 000975 601 -----------------GDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN-ELYMGN 661 (1205)
Q Consensus 601 -----------------~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~-~L~l~~ 661 (1205)
..+.+|++|++++|+++.+|.. |.++++|+.|++.++ +..++...|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 0267899999998888888764 788999999999884 8888888899999998 888877
Q ss_pred CcCccccCCCccchHhhccCCCCcEEEEe
Q 000975 662 SFTRKVEGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 662 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.+..++. ..+.++++|+.+++.
T Consensus 284 -~l~~I~~------~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 284 -SVTAIEF------GAFMGCDNLRYVLAT 305 (329)
T ss_dssp -TCCEECT------TTTTTCTTEEEEEEC
T ss_pred -cceEEch------hhhhCCccCCEEEeC
Confidence 4444443 567888888888874
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=3.5e-09 Score=118.65 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=78.0
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhC-CCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCCCccccc--------
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDG-MTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGD-------- 602 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~-l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~-------- 602 (1205)
.+.+++.|.+.++-.. ..-..+.. +++|++|||++|.|......-+.++.++++.+..+.|. ...|.+
T Consensus 23 ~~~~l~~L~l~g~i~~--~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA--EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHHCSEEEEEEEECH--HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEE
T ss_pred hhCceeEEEEeccccH--HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC-HHHhcccccccccc
Confidence 3567788888764211 01112233 67788888888888733222233344566666665433 244555
Q ss_pred cccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 603 LAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 603 L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
+.+|+.|++.+ .++.++. .|.++++|+.|++++|. +..+++..|..+.++.++....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcc
Confidence 88888888888 7777764 47788888888888754 6677777777777666665443
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=2.3e-08 Score=113.12 Aligned_cols=100 Identities=25% Similarity=0.229 Sum_probs=76.5
Q ss_pred EEEeeCC-CCCCcccccCCCcCCcEEEccC-CcCCC-C-ccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCC
Q 000975 563 VLHLTGI-HFPSLPLSLGSLINLRTLSFDC-CHLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNC 637 (1205)
Q Consensus 563 ~L~Ls~~-~i~~lp~~i~~L~~Lr~L~L~~-~~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 637 (1205)
.++++++ .++.+|. |..+.+|++|+|++ |.++. + ..|++|.+|++|+|++|+++.+|. .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3577777 7888888 88888888888885 77777 3 668888888888888888887754 5688888888888885
Q ss_pred CCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 638 SKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 638 ~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
. +..+|+..+..+. |++|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4 7778777566555 888888877654
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=2.5e-08 Score=111.75 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=115.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
.|..+..++|++..++.+..++.....+.+.++|++|+||||+|+.+++.......-...+.++.+.......+ +..+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 97 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKV- 97 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHH-
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHH-
Confidence 44556678999999999999988666666999999999999999999988532111012334443321111111 0000
Q ss_pred HhCCCCCCCCCHHHHHHHHHHH--HHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhHH-
Q 000975 227 QLGLEIVRPDSLVEKANQLRQA--LKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (1205)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~- 301 (1205)
...... +..+++.++|+||++... .++.+...+.. ...++++|+||......
T Consensus 98 ----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------~~~~~~~i~~~~~~~~l~ 154 (327)
T 1iqp_A 98 ----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKII 154 (327)
T ss_dssp ----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSC
T ss_pred ----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-------cCCCCeEEEEeCCccccC
Confidence 000000 111467899999998752 23333222211 24567888888765321
Q ss_pred hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHH
Q 000975 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANA 362 (1205)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 362 (1205)
..-......+++.+++.++..+++.+.+..... .-.++....|++.++|.|-.+..+...
T Consensus 155 ~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 155 EPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 100122347899999999999999988743211 122456788999999999865544433
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=5.9e-09 Score=117.92 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=115.5
Q ss_pred HHhcCCCcEEEccCCCCCCCCC-----cc--CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCc-----c
Q 000975 508 KAARKNPTAISIPFRDISELPD-----SL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-----P 575 (1205)
Q Consensus 508 ~~~~~~~r~lsl~~~~~~~l~~-----~~--~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-----p 575 (1205)
..+...++.+++++|.+..... .+ ..++|+.|++++|.+...-...++..+++|+.|+|++|.++.. .
T Consensus 68 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 3556789999999998754221 11 3478999999999876433444556677899999999998733 2
Q ss_pred ccc-CCCcCCcEEEccCCcCCC--C----ccccccccCcEEEcccCCCCc-----cchhccCCCccCEEeccCCCCCCcc
Q 000975 576 LSL-GSLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLKVI 643 (1205)
Q Consensus 576 ~~i-~~L~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~ 643 (1205)
..+ ...++|++|+|++|.++. . ..+..+++|++|+|++|.++. ++..+...++|++|+|++|. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 223 357889999999999865 2 345778899999999998873 45667788899999999976 6543
Q ss_pred Ch----hhhcCCCCCCEEEccCCcCc
Q 000975 644 KP----EVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 644 ~~----~~l~~L~~L~~L~l~~~~~~ 665 (1205)
.. ..+...++|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 22 22456788999999999765
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.3e-07 Score=98.21 Aligned_cols=171 Identities=11% Similarity=0.118 Sum_probs=105.9
Q ss_pred cCCChHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC-----CcEEEEEEecCCCCHHHHHHHH
Q 000975 154 FPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL-----FDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
+.||+++++++...|. ....+.+.|+|++|+|||++|+.+++....... --.++++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 5689999999887775 456778999999999999999999998764221 1245778877878889999999
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHH--HcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHH-
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQAL--KKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~- 301 (1205)
++++...........+....+...+ ..++++++|||+++....-+.+ ..+.. .... ......||.++...+..
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L-~~l~~--~~~~-~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKIL-QYFEK--WISS-KNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHH-HHHHH--HHHC-SSCCEEEEEECCSSCCCH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHH-HHHHh--cccc-cCCcEEEEEEecCcccch
Confidence 9999654322112233334444433 2357899999999875421111 11100 0000 11222344444332211
Q ss_pred ----h---hcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 302 ----R---INMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 302 ----~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
. ..+ ....+.+++++.+|-.+++.+++
T Consensus 178 ~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 0 011 12578999999999999999988
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=2.1e-07 Score=103.85 Aligned_cols=187 Identities=12% Similarity=0.115 Sum_probs=114.2
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-cEEEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF-DVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..|..+..++|++..++.+.+++.....+.+.++|++|+|||++|+.+++.... ..+ ..++.++.+.......+
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~---- 85 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVV---- 85 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTCTTTS----
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccChHHH----
Confidence 345566779999999999998887665555899999999999999999987531 111 11234444432111110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHH--HHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhH
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQA--LKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v 300 (1205)
.+........ +..+++.++|+||++... ..+.+...+.. ...++++|+||....-
T Consensus 86 --------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------~~~~~~~i~~~~~~~~ 144 (319)
T 2chq_A 86 --------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-------YSKSCRFILSCNYVSR 144 (319)
T ss_dssp --------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------SSSSEEEEEEESCGGG
T ss_pred --------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------cCCCCeEEEEeCChhh
Confidence 0111111100 112467899999998752 22333222222 2356778888766541
Q ss_pred -HhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 301 -LRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 301 -~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
...-......+++.+++.++..+++.+.+..... .-..+....|++.++|.+-.+...
T Consensus 145 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 145 IIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp SCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred cchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1101233458999999999999999988743221 122456778999999998755433
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=5.8e-08 Score=109.73 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=75.9
Q ss_pred EEEeecC-CCCCCCChhhhhCCCceeEEEeeC-CCCCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcc
Q 000975 538 LFLLFTE-DSSLQIPNQFFDGMTELLVLHLTG-IHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (1205)
Q Consensus 538 ~L~l~~n-~~~~~~~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~ 612 (1205)
.++++++ .+. .+|. +..+.+|++|+|++ |.+..+| ..|++|++|++|+|++|.|+. +..|++|++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3466665 555 5777 57888888888886 8888776 468888888888888888887 4678888889999999
Q ss_pred cCCCCccchhccCCCccCEEeccCCC
Q 000975 613 NSHIEQLPEQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 613 ~~~l~~lp~~i~~L~~L~~L~L~~~~ 638 (1205)
+|+++.+|..+.....|++|+|.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 88888887765444448899988865
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=9e-09 Score=116.41 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=105.6
Q ss_pred CCcceEEEeecCCCCCCCChhh---hh-CCCceeEEEeeCCCCCC--cccccCCCcCCcEEEccCCcCCC--Cccc----
Q 000975 533 CTRLKLFLLFTEDSSLQIPNQF---FD-GMTELLVLHLTGIHFPS--LPLSLGSLINLRTLSFDCCHLED--VARV---- 600 (1205)
Q Consensus 533 ~~~Lr~L~l~~n~~~~~~~~~~---~~-~l~~Lr~L~Ls~~~i~~--lp~~i~~L~~Lr~L~L~~~~l~~--~~~i---- 600 (1205)
.++|+.|++++|.+...-...+ +. ..++|++|+|++|.+.. +..-...+.+|++|+|++|.++. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999998763211111 12 33789999999999873 22223356789999999999876 3443
Q ss_pred -cccccCcEEEcccCCCCc-----cchhccCCCccCEEeccCCCCCCccC----hhhhcCCCCCCEEEccCCcCccccCC
Q 000975 601 -GDLAKLEILSFRNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLKVIK----PEVISRLSRLNELYMGNSFTRKVEGQ 670 (1205)
Q Consensus 601 -~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~~~~~~ 670 (1205)
...++|++|+|++|.++. ++..+..+++|++|+|++|. ++... ...+...++|++|++++|.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 346789999999998864 55666888999999999976 65432 2336677899999999987653210
Q ss_pred CccchHhhccCCCCcEEEEe
Q 000975 671 SNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 671 ~~~~l~~L~~L~~L~~L~l~ 690 (1205)
......+...++|+.|+++
T Consensus 229 -~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 229 -LALARAAREHPSLELLHLY 247 (372)
T ss_dssp -HHHHHHHHHCSSCCEEECT
T ss_pred -HHHHHHHHhCCCCCEEecc
Confidence 1112335566777777765
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=6.1e-07 Score=102.50 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=111.5
Q ss_pred cCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
|..+..++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+.. ..+.. .. ....+..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~---~~-~~~~~~~ 84 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CD-NCREIEQ 84 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSS---SH-HHHHHHT
T ss_pred CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcc---cH-HHHHHhc
Confidence 4455678999999999999887544 457889999999999999999987642211100 00000 00 0011110
Q ss_pred HhC-----CCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEec
Q 000975 227 QLG-----LEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (1205)
Q Consensus 227 ~l~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTT 295 (1205)
.-. ...... ...+....+.+.+. .+++.++|+||++... .++.+...+.. ...+..+|++|
T Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------~~~~~~~Il~~ 156 (373)
T 1jr3_A 85 GRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLAT 156 (373)
T ss_dssp SCCSSCEEEETTCS-CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------CCSSEEEEEEE
T ss_pred cCCCceEEeccccc-CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------CCCceEEEEEe
Confidence 000 000000 00011222222222 2467899999998652 23333222211 23456777777
Q ss_pred CchhH-HhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHH
Q 000975 296 RDQHV-LRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (1205)
Q Consensus 296 r~~~v-~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 360 (1205)
....- ...-......+++.+++.++..+++.+.+..... .-..+....|++.++|.|..+..+.
T Consensus 157 ~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 157 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 65432 1111234578999999999999999987622111 1124567789999999998776554
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=2.3e-07 Score=94.82 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=90.1
Q ss_pred CCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CCcEEEEEEecCCCCHHHHHHH
Q 000975 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-----LFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.....++||+++++.+.+++.....+.+.|+|++|+|||++|+.+++...... ....+++++++. +.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-- 90 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV-- 90 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH--
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh--
Confidence 34567899999999999999876667789999999999999999998864311 122445554321 10
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH-HcCCeEEEEEccccccccccc--ccCCCCCCCccccCCCCCeEEEEecCchhH
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQAL-KKKKRVLVILDDIWTQINLDD--IGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~~~~~--~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v 300 (1205)
....... ........+.+.+ ..+++.+|||||++....-.. ....+...+...+ ...+..+|+||.....
T Consensus 91 -----~~~~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 91 -----AGAKYRG-EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-ARGELHCVGATTLDEY 163 (195)
T ss_dssp -----TTTCSHH-HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HTTSCCEEEEECHHHH
T ss_pred -----ccCCccc-cHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-ccCCeEEEEeCCHHHH
Confidence 0000000 1112223333333 235688999999987521000 0000000000001 1334567777766542
Q ss_pred Hh------hcCCCCceEEccCCChHhHHHHH
Q 000975 301 LR------INMSNPRIFSISTLADGEAKSLF 325 (1205)
Q Consensus 301 ~~------~~~~~~~~~~l~~L~~~e~~~Lf 325 (1205)
.. .-......+.+++++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 01222336889999988877654
No 165
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.47 E-value=2.4e-06 Score=95.25 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=109.5
Q ss_pred cCCccccCCChHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (1205)
+..+..|+|++..++.+..++.. .....|.|+|++|+|||++|+.+++... .. .++++.+......++..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~~---~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--VN---LRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--CC---EEEECTTTCCSHHHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEeccccCChHHHHH
Confidence 34566799999998888877751 2345688999999999999999998764 22 34555444333222221
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEcccccccc--cccccCCCCCCCcc----------cc-CCCC
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQ----------SV-DNQG 287 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~----------~~-~~~~ 287 (1205)
.+.. .+..+|++||++.... ...+...+...... .+ ....
T Consensus 83 -------------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 83 -------------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -------------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -------------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1211 3556888888876421 11110000000000 00 0012
Q ss_pred CeEEEEecCchhHHhhc-CCC-CceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHHHHHh
Q 000975 288 RWTLLLASRDQHVLRIN-MSN-PRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (1205)
Q Consensus 288 ~s~ilvTTr~~~v~~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 363 (1205)
+.++|.||......... ... ...+++.+++.+|..+++.+.+..... .-..+....|++.++|.|-.+.-+...+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 35666666654322101 122 358999999999999999988743221 1224677899999999998776665444
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=5.2e-08 Score=94.77 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=53.3
Q ss_pred CccEEEecccCCcccccchhhHHhhccccEEEEccccccccccccccccccccccccccccceeccccCCCccccCCCcc
Q 000975 975 QLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQCASMQGIIDTGLGREENLIEMVFPKLVYLSLSHLPQLSRFGIGNL 1054 (1205)
Q Consensus 975 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~l 1054 (1205)
.|++|++++|. +++... ..+..+++|++|++++|..+++......+.. ...+++|++|+|++|+++++.....+
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~----~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQL----ENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTC----HHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhc----ccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 46666666654 444311 2234556666666666666554322000000 00134677777777777776555556
Q ss_pred cCCCCcceeeeccCccccc
Q 000975 1055 VELPSLRQLSINFCPELKR 1073 (1205)
Q Consensus 1055 ~~l~~L~~L~i~~C~~L~~ 1073 (1205)
.++++|++|+|++|++++.
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 6778888888888888776
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=1.2e-06 Score=99.86 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCCcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEc
Q 000975 512 KNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSF 589 (1205)
Q Consensus 512 ~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L 589 (1205)
+.+..+.+. +.+..++... .-.+|+.+.+..+ +. .++...|.++ +|+.+.+.. .+..++ ..|.+|.+|+.+++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEEC-CccCEehHhhcccCCccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 445556554 3455555433 2247888888766 33 6777777775 688888886 667664 45888999999999
Q ss_pred cCCcCCC-CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCccc
Q 000975 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (1205)
Q Consensus 590 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 667 (1205)
.+|.+.. +.......+|+.+.+.. .++.++. .+.++++|+.+++.. .+..++...|.+ .+|+.+.+.++ +..+
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCEE
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccEE
Confidence 8888877 43333368899999975 4777754 478888999999886 377788777877 78998888543 3444
Q ss_pred cCCCccchHhhccCCCCcEEEEe
Q 000975 668 EGQSNASVVELKQLSSLTILDMH 690 (1205)
Q Consensus 668 ~~~~~~~l~~L~~L~~L~~L~l~ 690 (1205)
.. ..+.++++|+.+.+.
T Consensus 263 ~~------~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 263 AS------RAFYYCPELAEVTTY 279 (401)
T ss_dssp CT------TTTTTCTTCCEEEEE
T ss_pred Ch------hHhhCCCCCCEEEeC
Confidence 33 567788888888775
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.39 E-value=1.2e-05 Score=86.86 Aligned_cols=200 Identities=13% Similarity=0.141 Sum_probs=109.8
Q ss_pred ccCCChHHHHHHHH-------Hhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHH
Q 000975 153 HFPSRNPVFQKMME-------SLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (1205)
+++|+...+++++. .+. ....+.+.|+|++|+|||++|+.+++... ..| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~~---~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPF---IKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSE---EEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEeCHHHh-------
Confidence 46677776666655 232 33456789999999999999999999753 222 223332210
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cccccCCCCCCCccccCCCCCeE
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEKQSVDNQGRWT 290 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~ 290 (1205)
++.. ..........+.+.....+..+|+|||++.... ++.+...+.. .-+......
T Consensus 102 -----~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~----~~~~~~~~~ 169 (272)
T 1d2n_A 102 -----IGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK----APPQGRKLL 169 (272)
T ss_dssp -----TTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC----CCSTTCEEE
T ss_pred -----cCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC----ccCCCCCEE
Confidence 0100 000111222333333335789999999976411 1111110000 000233455
Q ss_pred EEEecCchhHHhh--cCCC-CceEEccCCCh-HhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC------ChHHHHHHH
Q 000975 291 LLLASRDQHVLRI--NMSN-PRIFSISTLAD-GEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG------LPIAVSTIA 360 (1205)
Q Consensus 291 ilvTTr~~~v~~~--~~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g------lPLai~~~~ 360 (1205)
||.||........ ..+. ...++++++++ ++...++.+... . ..+....|++.+.| .+-++.++-
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~---~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN---F---KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC---S---CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC---C---CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 6777777654321 1222 45789999998 666666655321 1 23456788888887 455555555
Q ss_pred HHhcCCCchHHHHHHHHHHhcC
Q 000975 361 NALKGQSTHVWKDAINWLRKSN 382 (1205)
Q Consensus 361 ~~l~~~~~~~w~~~l~~l~~~~ 382 (1205)
.+-...+...++++++.+....
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHhhhchHHHHHHHHHHHHHcC
Confidence 5444445677888887776554
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.7e-06 Score=102.54 Aligned_cols=210 Identities=10% Similarity=0.067 Sum_probs=119.1
Q ss_pred cccCCccccCCChHHHHHHHHHhcc-----------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEE
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRD-----------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVD 208 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 208 (1205)
..|..+..++|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++... + .++.
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~ 107 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILE 107 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEE
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEE
Confidence 4566778899999999999999863 1346899999999999999999998763 2 3455
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-HHcCCeEEEEEccccccccc-----ccccCCCCCCCccc
Q 000975 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA-LKKKKRVLVILDDIWTQINL-----DDIGIPFWDGEKQS 282 (1205)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~~-----~~~~~~~~~~~~~~ 282 (1205)
++++.......+ ...+........-. . ......+. ...+++.+||+|+++....- ..+...
T Consensus 108 in~s~~~~~~~~-~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~-------- 174 (516)
T 1sxj_A 108 QNASDVRSKTLL-NAGVKNALDNMSVV-G---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF-------- 174 (516)
T ss_dssp ECTTSCCCHHHH-HHTGGGGTTBCCST-T---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH--------
T ss_pred EeCCCcchHHHH-HHHHHHHhccccHH-H---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH--------
Confidence 666655443322 22222211100000 0 00000000 01257889999999875321 111111
Q ss_pred cCCCCCeEEEEecCchh---HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC-ChHHHHH
Q 000975 283 VDNQGRWTLLLASRDQH---VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIAVST 358 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~~~---v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~ 358 (1205)
+ ...+..||+++.... +.. .......+++++++.++..+.+.+.+...... -.+++...|++.++| ++-|+..
T Consensus 175 l-~~~~~~iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 175 C-RKTSTPLILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp H-HHCSSCEEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHH
T ss_pred H-HhcCCCEEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1 112334555554432 222 13345689999999999999998876321111 112356789999999 5556665
Q ss_pred HHHHhcCC---CchHHHHHHH
Q 000975 359 IANALKGQ---STHVWKDAIN 376 (1205)
Q Consensus 359 ~~~~l~~~---~~~~w~~~l~ 376 (1205)
+..+.... +.+.-+.++.
T Consensus 252 L~~~~~~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 252 LSTISTTTKTINHENINEISK 272 (516)
T ss_dssp HTHHHHHSSCCCTTHHHHHHH
T ss_pred HHHHHhcCCCCchHHHHHHHH
Confidence 54433222 3444444444
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=2.5e-06 Score=97.34 Aligned_cols=141 Identities=11% Similarity=0.143 Sum_probs=67.1
Q ss_pred CcEEEccCCCCCCCCCcc-CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCC
Q 000975 514 PTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCC 592 (1205)
Q Consensus 514 ~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 592 (1205)
++.+.+..+ +..++... .-.+|+.+.+.. .+. .++...|.++.+|+.+++++|.++.+|...-.+.+|+.+.|..+
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 444444432 44443322 223466666553 222 45555556666666666666666655544333455666655533
Q ss_pred cCCC--CccccccccCcEEEcccCCCCccchh-ccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCC
Q 000975 593 HLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (1205)
Q Consensus 593 ~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 662 (1205)
+.. ...|.++.+|+.+++..+ ++.++.. +.+ .+|+.+.+.. .+..++...|.++++|+.+.+.++
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred -hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence 333 245555555555555542 3444322 222 4455554432 244444444455555555544433
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.29 E-value=6.3e-06 Score=89.86 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=106.8
Q ss_pred ccCCccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
+...+..++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++... . ..+.+..+.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~---~~~~v~~~~ 86 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--A---TFIRVVGSE 86 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--C---EEEEEEGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--C---CEEEEehHH
Confidence 344567889999999998887742 3456789999999999999999998754 2 223343322
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc------------cc-ccccCCCCCCCc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI------------NL-DDIGIPFWDGEK 280 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~-~~~~~~~~~~~~ 280 (1205)
-.. ...+ ........+.......++.+|+|||++... .. ..+...+.. .
T Consensus 87 ~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~--~ 148 (285)
T 3h4m_A 87 LVK--------------KFIG--EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE--M 148 (285)
T ss_dssp GCC--------------CSTT--HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH--H
T ss_pred HHH--------------hccc--hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH--h
Confidence 110 0000 112233344444444577899999997641 00 001000000 0
Q ss_pred cccCCCCCeEEEEecCchhHHhhc-C---CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC-ChHH
Q 000975 281 QSVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIA 355 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLa 355 (1205)
..+....+..||.||......... . .-...+.++..+.++..+++...+.......+ .....|++.+.| .|-.
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHH
Confidence 000123467788888765432100 1 22347899999999999999998844221111 113567777777 4433
Q ss_pred HH
Q 000975 356 VS 357 (1205)
Q Consensus 356 i~ 357 (1205)
+.
T Consensus 227 i~ 228 (285)
T 3h4m_A 227 LK 228 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.28 E-value=7e-07 Score=94.91 Aligned_cols=177 Identities=12% Similarity=0.125 Sum_probs=103.5
Q ss_pred CCccccCCC---hHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 149 RGYVHFPSR---NPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 149 ~~~~~~~gr---~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
..+..|+++ +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...++|++++..... +.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~ 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH
Confidence 344556653 3556666666655456789999999999999999999987643 335677776542110 00
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc----cccccCCCCCCCccccCCCCCeEEEEecCchhH-
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV- 300 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v- 300 (1205)
+ ..+.+ .++.+||+||++.... .+.+...+.. .......++|+||+...-
T Consensus 97 ~------------------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 97 A------------------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNR-----VAEQKRGSLIVSASASPME 151 (242)
T ss_dssp G------------------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHH-----HHHHCSCEEEEEESSCTTT
T ss_pred H------------------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHH-----HHHcCCCeEEEEcCCCHHH
Confidence 0 00111 2456899999987532 1112111100 001122257777764321
Q ss_pred -----Hhh--cCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 301 -----LRI--NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 301 -----~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
... .......+++++++.++..+++.+.+..... .-.+++...|++.++|.+-.+..+
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHH
Confidence 110 0111268999999999999999988732111 122466778999999988655443
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.27 E-value=9.8e-06 Score=93.17 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=107.5
Q ss_pred ccCCccccCCChHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVF---QKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.|..+..++|++..+ ..+...+.....+.+.|+|++|+||||+|+.+++... ..| +.+++.. ....++ +.
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~f---~~l~a~~-~~~~~i-r~ 93 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--ADV---ERISAVT-SGVKEI-RE 93 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CEE---EEEETTT-CCHHHH-HH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CCe---EEEEecc-CCHHHH-HH
Confidence 455677889999888 6777777767777899999999999999999998764 222 2222211 222222 11
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEE-ecCchhH
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL-ASRDQHV 300 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv-TTr~~~v 300 (1205)
++ .........+++.+|+||+++... ..+.+... +..+ ...+|. ||.+...
T Consensus 94 ~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~--------le~~-~v~lI~att~n~~~ 147 (447)
T 3pvs_A 94 AI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPH--------IEDG-TITFIGATTENPSF 147 (447)
T ss_dssp HH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHH--------HHTT-SCEEEEEESSCGGG
T ss_pred HH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHH--------HhcC-ceEEEecCCCCccc
Confidence 11 111222223578999999998652 22222221 2222 334444 5544421
Q ss_pred --HhhcCCCCceEEccCCChHhHHHHHHHHhCCC------CCCCchHHHHHHHHHhcCCChHHHH
Q 000975 301 --LRINMSNPRIFSISTLADGEAKSLFEKIVGDS------AKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 301 --~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
...-.....++.+++++.++...++.+.+... ....-.+++...|++.++|.+-.+.
T Consensus 148 ~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 148 ELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp SSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 11113345688999999999999999987331 1112235677889999999885444
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=2.3e-06 Score=96.88 Aligned_cols=198 Identities=12% Similarity=0.101 Sum_probs=113.7
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCcEEEEEEecCCCCHHHHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
.|..+..++|++..++.+..++.....+.+.++|++|+||||+|+.+++..... ..+ .++.++.+.......+...+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 110 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKV 110 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHH
Confidence 455567789999999999999886654458999999999999999999875421 111 23444444433333322211
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchhH-H
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV-L 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v-~ 301 (1205)
.............. ........++-+|++|+++... ....+...+.. .....++|++|....- .
T Consensus 111 ~~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 111 KNFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMET-------YSGVTRFCLICNYVTRII 177 (353)
T ss_dssp HHHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSC
T ss_pred HHHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh-------cCCCceEEEEeCchhhCc
Confidence 11111100000000 0000111355799999987652 12222221111 2345677777755431 1
Q ss_pred hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHHH
Q 000975 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (1205)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 359 (1205)
..-......+++.+++.++....+.+.+..... .-.+++.+.|++.++|.|-.+..+
T Consensus 178 ~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred chhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 100122347899999999999999988743211 122467789999999998764433
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.25 E-value=1.2e-05 Score=86.39 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=99.5
Q ss_pred CccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH
Q 000975 150 GYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (1205)
.+..++|.+..++.+.+.+. . ...+.|.|+|++|+|||++|+.+++... .. .+.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHhh
Confidence 44567888887777665542 1 2345688999999999999999998764 22 244444432110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------c----ccccCCCCCCCc
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------L----DDIGIPFWDGEK 280 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~----~~~~~~~~~~~~ 280 (1205)
... ........+.+......+.+|+|||++.... . ..+...+.
T Consensus 79 ---------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~---- 138 (262)
T 2qz4_A 79 ---------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD---- 138 (262)
T ss_dssp ---------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH----
T ss_pred ---------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh----
Confidence 000 1122233333333335679999999986410 0 01100000
Q ss_pred cccCCCCCeEEEEecCchhHHhhc-C---CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 281 QSVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
......+..||.||......... . .-...+.++..+.++-.+++...+...............+++.+.|.+-
T Consensus 139 -~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 139 -GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp -TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred -CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 00123456677777665432111 1 2236788999999999999998773222222222234688888888754
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=5.7e-07 Score=87.48 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=70.0
Q ss_pred CCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHh----hccccEEEEcccccccccccccc
Q 000975 946 PGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNS----LKQLQRLEISQCASMQGIIDTGL 1021 (1205)
Q Consensus 946 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~ 1021 (1205)
..|+.|++++|.++...-..+. .+++|++|+|++|..+++-.. ..+.. .++|++|+|++|+++++-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~----~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--- 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME----GLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI--- 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT----TCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH---
T ss_pred ceEeEEeCcCCCccHHHHHHhc----CCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH---
Confidence 4699999999987765433333 789999999999999988532 22333 35799999999999986533
Q ss_pred ccccccccccccccceeccccCCCccccC
Q 000975 1022 GREENLIEMVFPKLVYLSLSHLPQLSRFG 1050 (1205)
Q Consensus 1022 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 1050 (1205)
..+..+++|+.|+|++|+.+++..
T Consensus 133 -----~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 133 -----IALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -----HHGGGCTTCCEEEEESCTTCCCHH
T ss_pred -----HHHhcCCCCCEEECCCCCCCCchH
Confidence 113358999999999999998753
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.16 E-value=3.1e-05 Score=85.71 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=111.1
Q ss_pred ccccCCccccCCChHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 145 RFSVRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 145 ~~~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
..+...+..++|.+..++.+.+.+. ....+-|.++|++|+|||++|+.+++... .. .+.++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~v~~~ 85 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS 85 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE---EEEEEHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC---EEEEchH
Confidence 3455667889999999999888772 11235689999999999999999998764 22 2334332
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCCCCCC
Q 000975 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGE 279 (1205)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~ 279 (1205)
++. ... .+ ........+.+.....++.+|+||+++.... ...+...+..
T Consensus 86 ------~l~----~~~----~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-- 147 (322)
T 3eie_A 86 ------DLV----SKW----MG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG-- 147 (322)
T ss_dssp ------HHH----TTT----GG--GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG--
T ss_pred ------HHh----hcc----cc--hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc--
Confidence 111 000 00 2233344455544446778999999986421 1111000000
Q ss_pred ccccCCCCCeEEEEecCchhHHh--hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC-hHHH
Q 000975 280 KQSVDNQGRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAV 356 (1205)
Q Consensus 280 ~~~~~~~~~s~ilvTTr~~~v~~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai 356 (1205)
......+..||.||....... ....-...+.++..+.++-.++++..+......- .......|++.+.|. +-.|
T Consensus 148 --~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 148 --VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp --GGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHH
T ss_pred --ccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHH
Confidence 001234556666776643221 0012235788899999999999999885432211 234567888998874 4344
Q ss_pred HHH
Q 000975 357 STI 359 (1205)
Q Consensus 357 ~~~ 359 (1205)
..+
T Consensus 225 ~~l 227 (322)
T 3eie_A 225 AVV 227 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.16 E-value=5.2e-05 Score=85.05 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=108.0
Q ss_pred cCCccccCCChHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 148 VRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
+..+..++|.+..++.+.+.+. ....+.|.|+|++|+|||++|+.+++... . ..+.++++.-.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~~l~ 154 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--A---TFFSISASSLT 154 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--C---EEEEEEGGGGC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--C---eEEEEehHHhh
Confidence 4456678999999988888763 12356789999999999999999988753 2 23455554321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCCCCCCccc
Q 000975 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQS 282 (1205)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~ 282 (1205)
.. ..+ ........+.......++.+|+||+++.... +..+...+.. ..
T Consensus 155 ~~--------------~~g--~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~-~~-- 215 (357)
T 3d8b_A 155 SK--------------WVG--EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG-AT-- 215 (357)
T ss_dssp CS--------------STT--HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----
T ss_pred cc--------------ccc--hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc-cc--
Confidence 10 000 1122233334434445788999999965311 1111110000 00
Q ss_pred cCCCCCeEEEEecCchhHH--hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC-ChHHHHHH
Q 000975 283 VDNQGRWTLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIAVSTI 359 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~ 359 (1205)
.....+..||.||...... .........+.+...+.++..+++...+..... .-.++....|++.+.| .+-.|..+
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHH
Confidence 0012345566677554321 111223357889999999999999888733211 1123566788999988 45555544
Q ss_pred H
Q 000975 360 A 360 (1205)
Q Consensus 360 ~ 360 (1205)
.
T Consensus 295 ~ 295 (357)
T 3d8b_A 295 C 295 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=2.6e-05 Score=89.37 Aligned_cols=57 Identities=14% Similarity=0.256 Sum_probs=32.5
Q ss_pred cCCcceeeeccccccccCCCCCCCccccCCCccEEEecccCCcccccchhhHHhhccccEEEEcc
Q 000975 945 FPGLKKLEMVSINIERIWPNQFPATSYSSQQLTELTVDKCGCLKFLFSSSMVNSLKQLQRLEISQ 1009 (1205)
Q Consensus 945 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~ 1009 (1205)
+.+|+.++|.. +++.+....|. ++.+|+.+.+.. +++.+.. ..+.++++|+++++..
T Consensus 319 c~~L~~i~lp~-~v~~I~~~aF~----~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 319 CTSLVSIDLPY-LVEEIGKRSFR----GCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCT-TCCEECTTTTT----TCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred CCCCCEEEeCC-cccEEhHHhcc----CCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 44555555543 25555555554 566777777754 3555533 4466667777777643
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=9.2e-06 Score=91.77 Aligned_cols=199 Identities=10% Similarity=0.111 Sum_probs=107.3
Q ss_pred cccCCccccCCChHHHHHHHHHh-ccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcE---------------
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESL-RDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDV--------------- 205 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~--------------- 205 (1205)
..|..+..++|++..++.+.+++ .....+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 34556677899999999998888 5544444899999999999999999985421010 000
Q ss_pred -----EEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCC
Q 000975 206 -----VVDAEVTHTP-DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWD 277 (1205)
Q Consensus 206 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~ 277 (1205)
.+.+..+... ......+.+++.+.....-. . .. .+ ..+. .++-++|+|++..... .+.+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~---~~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-F---QD-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc-c---cc-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 1111111110 00001222222221110000 0 00 00 0011 3566899999987421 1222111111
Q ss_pred CCccccCCCCCeEEEEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCch-HHHHHHHHHhcCCChHH
Q 000975 278 GEKQSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDC-RAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 278 ~~~~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~-~~~~~~i~~~~~glPLa 355 (1205)
...++.+|++|.+.. +...-......+++++++.++..+.+.+.+...... -. ++....|++.++|.+-.
T Consensus 161 -------~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 161 -------YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRV 232 (354)
T ss_dssp -------STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHH
T ss_pred -------hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHH
Confidence 124567777776643 211112334789999999999999999877321111 11 35677899999998865
Q ss_pred HHHH
Q 000975 356 VSTI 359 (1205)
Q Consensus 356 i~~~ 359 (1205)
+..+
T Consensus 233 a~~~ 236 (354)
T 1sxj_E 233 SLLM 236 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=2e-05 Score=88.21 Aligned_cols=186 Identities=12% Similarity=0.129 Sum_probs=107.0
Q ss_pred cccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc-EEEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 224 (1205)
..|..+..++|.+..++.+..++..++.+.+.++|++|+||||+|+.++..... ..+. .+..++.+.......+.. +
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir~-~ 96 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVRN-Q 96 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHHT-H
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHHH-H
Confidence 345666778899999998888887665555899999999999999999988642 1111 123333333222222211 1
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchh-HH
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VL 301 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-v~ 301 (1205)
...+..... .+ .+.+-++|+|+++... ..+.+...+-. ....+++|++|.... +.
T Consensus 97 i~~~~~~~~--------------~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~-------~~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 97 IKDFASTRQ--------------IF-SKGFKLIILDEADAMTNAAQNALRRVIER-------YTKNTRFCVLANYAHKLT 154 (340)
T ss_dssp HHHHHHBCC--------------SS-SCSCEEEEETTGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSC
T ss_pred HHHHHhhcc--------------cC-CCCceEEEEeCCCCCCHHHHHHHHHHHhc-------CCCCeEEEEEecCccccc
Confidence 111100000 00 1246789999997642 12222111111 124566777765443 11
Q ss_pred hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHH
Q 000975 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (1205)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 356 (1205)
..-......+++.+++.++..+.+.+.+..... .-.++..+.|++.++|.+-.+
T Consensus 155 ~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 155 PALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHHH
T ss_pred hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 101233457899999999999988887732111 112456778899999987643
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.09 E-value=5.9e-05 Score=84.42 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=105.4
Q ss_pred ccCCccccCCChHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
.|..+..++|++..++.+..++.. ...+.|.|+|++|+|||++|+.+++... .. .+.++.+.......
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~~-- 96 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSGD-- 96 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHHH--
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchhH--
Confidence 345677899999999998888862 3345688999999999999999987753 22 23344333221111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHH-cCCeEEEEEccccccc--ccccccCCCCCCCc----------ccc-CCCC
Q 000975 222 GRIADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQI--NLDDIGIPFWDGEK----------QSV-DNQG 287 (1205)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~----------~~~-~~~~ 287 (1205)
+...+. ..+..+|+||+++... ....+...+..... ... ...+
T Consensus 97 -----------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 97 -----------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp -----------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred -----------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 111121 1356788999988652 11111100000000 000 0112
Q ss_pred CeEEEEecCchhHH--hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 288 RWTLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 288 ~s~ilvTTr~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
+..+|.+|...... .........+++++++.++...++.+.+.... ..-..+....|++.+.|.|-.+.-
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHH
Confidence 34666666553321 11122246899999999999999998874321 122346678899999999854443
No 183
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.00014 Score=80.18 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=108.7
Q ss_pred ccCCccccCCChHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+..++|.+..++.+.+.+. ....+-|.++|++|+|||++|+.+++.... . ..+.++.+.-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l 82 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDL 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHH
Confidence 34456778898888888877653 112367899999999999999999987621 1 2234444322
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc---------cccCCCCCCCccccCC
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD---------DIGIPFWDGEKQSVDN 285 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~~~~ 285 (1205)
.. ...+ ........+.+.....++.+|+||+++....-. .+...+...+......
T Consensus 83 ~~--------------~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 83 VS--------------KWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp CC--------------SSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred Hh--------------hhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 11 0011 112334444444444678999999998651100 0000000000000001
Q ss_pred CCCeEEEEecCchhHHh--hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh-HHHHHHH
Q 000975 286 QGRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTIA 360 (1205)
Q Consensus 286 ~~~s~ilvTTr~~~v~~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 360 (1205)
..+..||.||..+.... ....-...+.++..+.++-.++++..+...... -.+.....|++.+.|.. -.|..+.
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556666665543221 011334678899999999999999887542211 12345678999998874 3344443
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.08 E-value=8.4e-05 Score=84.66 Aligned_cols=189 Identities=12% Similarity=0.097 Sum_probs=106.6
Q ss_pred cccCCccccCCChHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
.++..+..++|++..++.+.+++. ....+-|.|+|++|+|||++|+.+++... . ..+.++++.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~ 183 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAAS 183 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCC
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHH
Confidence 345567789999999999988873 12246789999999999999999987743 1 234444433
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCCCCCCc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEK 280 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~ 280 (1205)
-... . .+ ........+........+.+|+||+++.... ...+...+.. ..
T Consensus 184 l~~~--~------------~g--~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~ 246 (389)
T 3vfd_A 184 LTSK--Y------------VG--EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG-VQ 246 (389)
T ss_dssp C-----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH-HC
T ss_pred hhcc--c------------cc--hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc-cc
Confidence 2210 0 00 1122233444444445678999999976410 0011000000 00
Q ss_pred cccCCCCCeEEEEecCchhHH--hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHH
Q 000975 281 QSVDNQGRWTLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVS 357 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~ 357 (1205)
-.......||.||...... .........+.+...+.++..+++...+...... -.++....|++.+.|..- +|.
T Consensus 247 --~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 247 --SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp -------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHH
T ss_pred --ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHH
Confidence 0012334566666554322 1111223578899999999999999888442221 223466788998888553 444
Q ss_pred HH
Q 000975 358 TI 359 (1205)
Q Consensus 358 ~~ 359 (1205)
.+
T Consensus 324 ~L 325 (389)
T 3vfd_A 324 AL 325 (389)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.06 E-value=1.4e-05 Score=88.97 Aligned_cols=176 Identities=9% Similarity=0.013 Sum_probs=103.4
Q ss_pred cccCCccccCCChHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..|..+..++|++..++.+.+++.... ..++.+.|++|+|||++|+.+++... ..++.++.+... ...+ +..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~~-~~~i-~~~ 92 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDCK-IDFV-RGP 92 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTCC-HHHH-HTH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccccC-HHHH-HHH
Confidence 345667789999999999999988544 35777888899999999999988763 234556544422 2222 111
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHH----cCCeEEEEEccccccc---ccccccCCCCCCCccccCCCCCeEEEEecCc
Q 000975 225 ADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI---NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (1205)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~ 297 (1205)
+. +... .+++.++|+||++... ..+.+...+.. ...+.++|+||..
T Consensus 93 ~~--------------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-------~~~~~~iI~~~n~ 145 (324)
T 3u61_B 93 LT--------------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-------YSSNCSIIITANN 145 (324)
T ss_dssp HH--------------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-------HGGGCEEEEEESS
T ss_pred HH--------------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-------CCCCcEEEEEeCC
Confidence 11 1111 1367899999998753 22222211111 1245678888876
Q ss_pred hhHH-hhcCCCCceEEccCCChHhHHHHHH-------HHhCCCCCCCchHHHHHHHHHhcCCChHH
Q 000975 298 QHVL-RINMSNPRIFSISTLADGEAKSLFE-------KIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (1205)
Q Consensus 298 ~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~~~~~~~~i~~~~~glPLa 355 (1205)
..-. ..-......+++++++.++-.+++. +.+......-...++...|++.++|.+-.
T Consensus 146 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 146 IDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp GGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred ccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 5421 0001123579999999888544332 22211111111126677889999887753
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.04 E-value=1e-05 Score=89.43 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=85.7
Q ss_pred ccCCChHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc--EEEEEEecCCC
Q 000975 153 HFPSRNPVFQKMMESLR---------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD--VVVDAEVTHTP 215 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~ 215 (1205)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 36788887777776543 22345689999999999999999998875433221 2333332211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc-----------ccccccCCCCCCCccccC
Q 000975 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI-----------NLDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~~~~~~~~~~~~~~~~~~ 284 (1205)
.....+ ........+ +...+..+|+||+++... ....+...+..
T Consensus 111 -------------~~~~~g--~~~~~~~~~---~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~------- 165 (309)
T 3syl_A 111 -------------VGQYIG--HTAPKTKEV---LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN------- 165 (309)
T ss_dssp -------------CCSSTT--CHHHHHHHH---HHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH-------
T ss_pred -------------hhhccc--ccHHHHHHH---HHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc-------
Confidence 111111 112222222 222244599999998441 11222111111
Q ss_pred CCCCeEEEEecCchhHH-------hhcCCCCceEEccCCChHhHHHHHHHHhC
Q 000975 285 NQGRWTLLLASRDQHVL-------RINMSNPRIFSISTLADGEAKSLFEKIVG 330 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~v~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 330 (1205)
...+..||+||...... .........+++++++.++-.+++...+.
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 166 NRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 23456788887654321 00011126899999999999999988873
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=6e-05 Score=83.74 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCcEEEEEEec---C
Q 000975 158 NPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVVDAEVT---H 213 (1205)
Q Consensus 158 ~~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~---~ 213 (1205)
++..+.+...+..++ .+.+.++|+.|+|||++|+.+++...... +++. .++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCC
Confidence 455667777776554 45789999999999999999998764211 2332 333322 1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEE
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTL 291 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i 291 (1205)
...+.++ +.+.+.+..... .+++-++|+|+++... ..+.+...+-. ...++.+
T Consensus 87 ~~~i~~i-r~l~~~~~~~~~-----------------~~~~kvviIdead~l~~~a~naLLk~lEe-------p~~~~~~ 141 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHAR-----------------LGGAKVVWVTDAALLTDAAANALLKTLEE-------PPAETWF 141 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCCT-----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTS-------CCTTEEE
T ss_pred CCCHHHH-HHHHHHHhhccc-----------------cCCcEEEEECchhhcCHHHHHHHHHHhcC-------CCCCeEE
Confidence 1222222 223332221110 1467789999998753 22223222211 2345677
Q ss_pred EEecCchh-HHhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 292 LLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 292 lvTTr~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
|++|.+.. +...-......++++++++++..+.+.+... -.++.+..+++.++|.|..+..
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 77766653 2221134456899999999999999988751 1234567899999999965543
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=0.00013 Score=79.86 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=106.7
Q ss_pred ccCCccccCCChHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRD------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
++..+..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++... . ..+.++.+.-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~---~~~~i~~~~l 90 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--A---TFLNISAASL 90 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--C---EEEEEESTTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C---CeEEeeHHHH
Confidence 344567789999999988887631 2346789999999999999999998753 2 2234444332
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccccc---------ccCCCCCCCccccC-
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD---------IGIPFWDGEKQSVD- 284 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---------~~~~~~~~~~~~~~- 284 (1205)
.. ...+ ........+.......++.+|++|+++....-.. +...+... .+..+
T Consensus 91 ~~--------------~~~~--~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~-l~~~~~ 153 (297)
T 3b9p_A 91 TS--------------KYVG--DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVE-FDGLPG 153 (297)
T ss_dssp SS--------------SSCS--CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHH-HHHCC-
T ss_pred hh--------------cccc--hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHH-Hhcccc
Confidence 11 0001 2233334444444445788999999976521100 00000000 00000
Q ss_pred --CCCCeEEEEecCchhHHh--hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH-HHHHH
Q 000975 285 --NQGRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTI 359 (1205)
Q Consensus 285 --~~~~s~ilvTTr~~~v~~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 359 (1205)
.+.+..||.||....... ........+.++..+.++...++...+..... .-..+....|++.+.|.+- ++..+
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 123456777777643211 00122356788888888888888887733211 1123456788899988775 44333
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=1e-05 Score=81.69 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=43.8
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.....++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 334567899999999999999876667789999999999999999998864
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.99 E-value=0.00021 Score=82.48 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=105.5
Q ss_pred ccCCccccCCChHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+..++|.+..++.+.+.+. ....+.|.|+|++|+|||++|+.+++... .. ..+.++.+.-
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~---~~~~v~~~~l 204 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDL 204 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SS---EEEEECCC--
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CC---CEEEEeHHHH
Confidence 44566778999999888887762 12346789999999999999999998752 01 2233333221
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc---------cccccCCCCCCCccccCC
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---------LDDIGIPFWDGEKQSVDN 285 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~~~~~~~~~~~~~~~~ 285 (1205)
.... .+. . . .....+.+.....++.+|+||+++.... ...+...+...+......
T Consensus 205 ------~~~~---~g~-~--~----~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 205 ------VSKW---LGE-S--E----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp -----------------C--C----CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred ------Hhhh---cch-H--H----HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 1110 111 0 1 1123333334445789999999986411 000000000000000001
Q ss_pred CCCeEEEEecCchhHHh--hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC-hHHHHHH
Q 000975 286 QGRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVSTI 359 (1205)
Q Consensus 286 ~~~s~ilvTTr~~~v~~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~ 359 (1205)
..+..||.||..+.... ........+.++..+.++...+|..++...... -.......|++.+.|. +-.|..+
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34566776776553221 112333578888889999999999887542211 1234567888999884 4344443
No 191
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.97 E-value=6.2e-05 Score=86.21 Aligned_cols=57 Identities=9% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccC
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDC 591 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~ 591 (1205)
+|.+|+.+.+..+ +. .++...|.++.+|+.+++..+ ++.++ ..|.++.+|+.+.+..
T Consensus 69 ~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 6778888888643 33 577777888888888888654 55553 3466777777665543
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=8.7e-05 Score=81.09 Aligned_cols=181 Identities=12% Similarity=0.142 Sum_probs=103.5
Q ss_pred ccCCccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
+...+.+++|.+..++.+.+++.. ...+.|.|+|++|+|||++|+.+++... . ..+.++
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~---~~i~v~--- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A---NFISIK--- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---EEEEEC---
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--C---CEEEEE---
Confidence 344566788999888887776641 3346789999999999999999998754 2 223332
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc----------------cccccCCCCC
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------------LDDIGIPFWD 277 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~ 277 (1205)
..++.... .+.. ......+.+......+.+|++|+++.... ...+...+.
T Consensus 82 ---~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~- 147 (301)
T 3cf0_A 82 ---GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD- 147 (301)
T ss_dssp ---HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH-
T ss_pred ---hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh-
Confidence 22332222 2211 11123333333335789999999975310 011100000
Q ss_pred CCccccCCCCCeEEEEecCchhHHhhc-C---CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 278 GEKQSVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 278 ~~~~~~~~~~~s~ilvTTr~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+....+..||.||......... . .-...+.++..+.++-.++++..+.......+.. ...+++.+.|.|
T Consensus 148 ----~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~s 221 (301)
T 3cf0_A 148 ----GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFS 221 (301)
T ss_dssp ----SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCC
T ss_pred ----cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCC
Confidence 01123456777777765432111 1 2235789999999999999988874322111111 235667777776
Q ss_pred HH
Q 000975 354 IA 355 (1205)
Q Consensus 354 La 355 (1205)
-+
T Consensus 222 g~ 223 (301)
T 3cf0_A 222 GA 223 (301)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.95 E-value=6.7e-05 Score=86.46 Aligned_cols=184 Identities=14% Similarity=0.182 Sum_probs=103.2
Q ss_pred CccccC-CCh--HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 150 GYVHFP-SRN--PVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 150 ~~~~~~-gr~--~~~~~l~~~l~~~~-~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
.+..|+ |.. .....+........ ...+.|+|++|+||||||+.+++.......-..+++++... +...+.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHH
Confidence 345566 532 23334444443332 56789999999999999999999875332122356665443 333333
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc----cccccCCCCCCCccccCCCCCeEEEEecCchhH-
Q 000975 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV- 300 (1205)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v- 300 (1205)
..+... . ...+.+.+. .+.-+||+||++.... .+.+...+.. + ...|..||+||.....
T Consensus 177 ~~~~~~-----~----~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~-----l-~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 177 DSMKEG-----K----LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNE-----L-HDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHTT-----C----HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHH-----H-HTTTCEEEEEESSCGGG
T ss_pred HHHHcc-----c----HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHH-----H-HHCCCeEEEEECCCHHH
Confidence 333211 1 112233332 2567999999976532 1122111100 0 1346678888876321
Q ss_pred --------HhhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHH
Q 000975 301 --------LRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 301 --------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
.. .+.....+.+++++.++..+++.+.+..... .-.+++...|++.++|.+-.+.
T Consensus 241 l~~l~~~L~s-R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 241 LSEFQDRLVS-RFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CSSCCHHHHH-HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHh-hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Confidence 11 1222357889999999999999988731100 0112456788888988885443
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=6.2e-05 Score=84.26 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=105.8
Q ss_pred ccCCccccCCChHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+..++|.+..++.+.+.+. ....+-|.|+|++|+|||++|+.+++... .. .+.++.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~v~~~-- 118 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS-- 118 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CE---EEEEEHH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CC---EEEeeHH--
Confidence 34456778899988888887763 01234588999999999999999999874 22 2333322
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCCCCCCcc
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQ 281 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~ 281 (1205)
++. ... .+ ........+.......++.+|+||+++.... ...+...+..
T Consensus 119 ----~l~----~~~----~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~---- 180 (355)
T 2qp9_X 119 ----DLV----SKW----MG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG---- 180 (355)
T ss_dssp ----HHH----SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHH----
T ss_pred ----HHh----hhh----cc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhc----
Confidence 111 100 01 1122334444444445789999999986421 1111100000
Q ss_pred ccCCCCCeEEEEecCchhHH--hhcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC-hHHHHH
Q 000975 282 SVDNQGRWTLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVST 358 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~ 358 (1205)
.-....+..||.||...... .....-...+.+...+.++-.+++...+......- .......|++.+.|. +-.|..
T Consensus 181 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 181 VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp CC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHH
Confidence 00013455666677655321 11113346788999999999999998885432111 134567889999884 434444
Q ss_pred H
Q 000975 359 I 359 (1205)
Q Consensus 359 ~ 359 (1205)
+
T Consensus 260 l 260 (355)
T 2qp9_X 260 V 260 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=8.6e-06 Score=90.96 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=56.3
Q ss_pred hhhhCCCceeEEEeeCCCCCCcccccCCCcCCcEEEccCCcCCC--Ccccc--ccccCcEEEcccC--C------CCccc
Q 000975 553 QFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVG--DLAKLEILSFRNS--H------IEQLP 620 (1205)
Q Consensus 553 ~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~--~L~~L~~L~L~~~--~------l~~lp 620 (1205)
.++..+++|+.|+|+++.-..++. +. +++|++|+|..|.+.. ...++ .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344566667777776653223333 32 6667777776666544 23333 5667777766421 1 11221
Q ss_pred hhc--cCCCccCEEeccCCCCCCc-cChhh--hcCCCCCCEEEccCCcCc
Q 000975 621 EQI--GNLTRLKLLDLSNCSKLKV-IKPEV--ISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 621 ~~i--~~L~~L~~L~L~~~~~l~~-~~~~~--l~~L~~L~~L~l~~~~~~ 665 (1205)
..+ ..+++|++|++.+|. +.. .+... ...+++|++|+++.|.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 112 246677777776654 221 11110 124566777777666543
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.93 E-value=3.7e-05 Score=87.27 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=37.8
Q ss_pred ccccCCChHHHHH---HHHHhccCCc--cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 151 YVHFPSRNPVFQK---MMESLRDSNV--NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 151 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+..|+|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6678999988665 4444444333 5899999999999999999999875
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.91 E-value=6e-05 Score=87.76 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=87.7
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----c-EEEEEEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF----D-VVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~ 222 (1205)
+....+++||+.+++.+++.+......-+.++|++|+|||++|+.+++........ + .++.++++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 34566799999999999999976555667899999999999999999986421100 1 12333333
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHH-
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~- 301 (1205)
..... ........+.......++.+|++| ...+....+...+ .....++|.+|......
T Consensus 246 ---~~~~g------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L---------~~g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 246 ---TKYRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL---------ARGELQCIGATTLDEYRK 305 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT---------TSSSCEEEEECCTTTTHH
T ss_pred ---ccccc------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh---------cCCCEEEEecCCHHHHHH
Confidence 00000 001123344444554577899999 1112222222222 12345666666655411
Q ss_pred -----hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 302 -----RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 302 -----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
..-......+.++..+.++..+++...+
T Consensus 306 ~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0001233479999999999999999776
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=4.3e-05 Score=84.56 Aligned_cols=184 Identities=11% Similarity=0.097 Sum_probs=106.9
Q ss_pred cccCCccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
.|...+.++.|-++.+++|.+.+. -...+-|.++|++|+|||.+|+++++... .. .+.++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~---f~~v~~s 216 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CK---FIRVSGA 216 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CE---EEEEEGG
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CC---ceEEEhH
Confidence 345567788898888888777653 12235588999999999999999999876 22 2445444
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc------------cccCCCCCCCc
Q 000975 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD------------DIGIPFWDGEK 280 (1205)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~------------~~~~~~~~~~~ 280 (1205)
.-.+ ...+ ..+..+..+...-+...+++|++|+++....-. .....+... .
T Consensus 217 ~l~s--------------k~vG--ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-l 279 (405)
T 4b4t_J 217 ELVQ--------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ-L 279 (405)
T ss_dssp GGSC--------------SSTT--HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH-H
T ss_pred Hhhc--------------cccc--hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh-h
Confidence 3211 0000 122334444444445688999999998641100 000000000 0
Q ss_pred cccCCCCCeEEEEecCchhHHhhc----CCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 281 QSVDNQGRWTLLLASRDQHVLRIN----MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+-+....+-.||.||..+....-+ -.-...++++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 001234455677777766543111 13356889999999999999988875432222211 356778887754
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=4.7e-06 Score=83.77 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=73.1
Q ss_pred hhhCCCceeEEEeeCC-CCC-----CcccccCCCcCCcEEEccCCcCCC--C----ccccccccCcEEEcccCCCCc---
Q 000975 554 FFDGMTELLVLHLTGI-HFP-----SLPLSLGSLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIEQ--- 618 (1205)
Q Consensus 554 ~~~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~~--- 618 (1205)
++...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3466777888888877 765 245566777788888888888765 1 334455778888888887763
Q ss_pred --cchhccCCCccCEEec--cCCCCCCccC----hhhhcCCCCCCEEEccCCcCc
Q 000975 619 --LPEQIGNLTRLKLLDL--SNCSKLKVIK----PEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 619 --lp~~i~~L~~L~~L~L--~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+...+...++|++|+| ++|. +.... ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556677777888888 5544 44321 122445577777777776543
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.86 E-value=4.6e-05 Score=96.19 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=92.1
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC-----CcEEEEEEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL-----FDVVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 222 (1205)
+....+++||+.++..+++.+.....+.+.++|++|+|||++|+.+++....... -..+++++++.-..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 4566779999999999999997655556789999999999999999998643110 12345554432110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHc-CCeEEEEEcccccccc-------cccccCCCCCCCccccCCCCCeEEEEe
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQIN-------LDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~ilvT 294 (1205)
+....+ ........+.+.... +++.+|++|+++.... ++.. ..+...+ ...+..+|.+
T Consensus 240 ------g~~~~g--~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-----~~L~~~l-~~~~i~~I~a 305 (854)
T 1qvr_A 240 ------GAKYRG--EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-----NMLKPAL-ARGELRLIGA 305 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHH-HTTCCCEEEE
T ss_pred ------cCccch--HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-----HHHHHHH-hCCCeEEEEe
Confidence 000000 233344455555543 3678999999986531 1111 0111111 1234456665
Q ss_pred cCchhH-----HhhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 295 SRDQHV-----LRINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 295 Tr~~~v-----~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
|..... ...-......+.+++++.++..++++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 554432 11012233468999999999999997654
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.80 E-value=0.00014 Score=80.60 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=92.6
Q ss_pred HHHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 000975 160 VFQKMMESLRDS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDS 237 (1205)
Q Consensus 160 ~~~~l~~~l~~~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 237 (1205)
....+..+.... ....+.|+|++|+||||+|+.+++..... . ..++++++.. +...+...+... .
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~~------~~~~~~~~~~~~-----~ 88 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSADD------FAQAMVEHLKKG-----T 88 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHHH------HHHHHHHHHHHT-----C
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHHH------HHHHHHHHHHcC-----c
Confidence 344444444433 34578899999999999999999987532 1 2345665432 233333222110 1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEcccccccc---c-ccccCCCCCCCccccCCCCCeEEEEecCchhH---------Hhhc
Q 000975 238 LVEKANQLRQALKKKKRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV---------LRIN 304 (1205)
Q Consensus 238 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v---------~~~~ 304 (1205)
...+.+.+. +..+|++||++.... + +.+...+.. . ...+..||+||..... .. .
T Consensus 89 ----~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~-----~-~~~~~~iii~~~~~~~~l~~l~~~L~s-R 155 (324)
T 1l8q_A 89 ----INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNT-----L-YLLEKQIILASDRHPQKLDGVSDRLVS-R 155 (324)
T ss_dssp ----HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHH-----H-HHTTCEEEEEESSCGGGCTTSCHHHHH-H
T ss_pred ----HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHH-----H-HHCCCeEEEEecCChHHHHHhhhHhhh-c
Confidence 122233333 466899999987532 1 122111100 0 1235578887764321 11 1
Q ss_pred CCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChH
Q 000975 305 MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (1205)
Q Consensus 305 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 354 (1205)
+.....+++++ +.++..+++.+.+..... .-.+++...|++.+ |..-
T Consensus 156 ~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 156 FEGGILVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred ccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHH
Confidence 22235789999 999999999988732111 11245667888888 6653
No 202
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00028 Score=78.28 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=105.8
Q ss_pred ccccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 000975 145 RFSVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (1205)
Q Consensus 145 ~~~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (1205)
..|...+.++.|-++.+++|.+.+. . ...+=|.++|++|+|||.+|+++++... ..| +.++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~f---i~v~~ 249 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATF---LRIVG 249 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEE---EEEES
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCE---EEEEH
Confidence 3455677888898888888777553 1 2245688999999999999999999876 222 34443
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccccccc------------CCCCCCC
Q 000975 212 THTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIG------------IPFWDGE 279 (1205)
Q Consensus 212 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~------------~~~~~~~ 279 (1205)
+.-.+ ...+ ..+..+..+...-+...+++|++|+++....-..-. ..+...
T Consensus 250 s~l~s--------------k~vG--esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~- 312 (437)
T 4b4t_I 250 SELIQ--------------KYLG--DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ- 312 (437)
T ss_dssp GGGCC--------------SSSS--HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH-
T ss_pred HHhhh--------------ccCc--hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH-
Confidence 32110 0000 123334444444445688999999997541100000 000000
Q ss_pred ccccCCCCCeEEEEecCchhHHhhcCC----CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 280 KQSVDNQGRWTLLLASRDQHVLRINMS----NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 280 ~~~~~~~~~s~ilvTTr~~~v~~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+.+....+..||.||..++...-++- -...++++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 313 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp HHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred hhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 000113445567778877665432222 134678888888888889988875432222211 346777777654
No 203
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00021 Score=80.67 Aligned_cols=184 Identities=15% Similarity=0.152 Sum_probs=105.5
Q ss_pred cccCCccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
.|...+.++.|-+..+++|.+.+. -...+=|.++|++|+|||++|+++++... .. .+.++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~---~~~v~~s 249 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--AN---FIFSPAS 249 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGG
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehh
Confidence 345567788898888887776653 12346688999999999999999999876 22 2445544
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc--------cc----ccCCCCCCCc
Q 000975 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL--------DD----IGIPFWDGEK 280 (1205)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--------~~----~~~~~~~~~~ 280 (1205)
.-.+ ...+ .....+..+...-....+++|++|+++....- +. ....+... .
T Consensus 250 ~l~s--------------k~~G--ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-l 312 (437)
T 4b4t_L 250 GIVD--------------KYIG--ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ-M 312 (437)
T ss_dssp GTCC--------------SSSS--HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH-H
T ss_pred hhcc--------------ccch--HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH-h
Confidence 3211 0000 12223344444444468999999999854110 00 00000000 0
Q ss_pred cccCCCCCeEEEEecCchhHHhhcC-C---CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 281 QSVDNQGRWTLLLASRDQHVLRINM-S---NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+-+....+..||.||..+....-++ . -...++++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 0012344567888887765442222 1 134788888888888888888774322222111 356777887754
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=5.4e-05 Score=85.33 Aligned_cols=184 Identities=12% Similarity=0.141 Sum_probs=103.7
Q ss_pred cccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 146 FSVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
.|...+.++.|-+..+++|.+.+. . ...+-|.++|++|+|||.+|+++++... .. .+.++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~---f~~v~~s 249 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--AT---FLKLAAP 249 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CC---EEEEehh
Confidence 355567888899998888877643 1 2345688999999999999999999876 22 2444443
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------cccccCCCCCCCc
Q 000975 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEK 280 (1205)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~~~~~~~~~~~~~ 280 (1205)
.-.+ ...+ .....+..+...-+...+++|++|+++.... .......+... .
T Consensus 250 ~l~~--------------~~vG--ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~-l 312 (434)
T 4b4t_M 250 QLVQ--------------MYIG--EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ-L 312 (434)
T ss_dssp GGCS--------------SCSS--HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH-H
T ss_pred hhhh--------------cccc--hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH-h
Confidence 3111 0000 1222333444433445789999999875310 00000000000 0
Q ss_pred cccCCCCCeEEEEecCchhHHhhcC-C---CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 281 QSVDNQGRWTLLLASRDQHVLRINM-S---NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 281 ~~~~~~~~s~ilvTTr~~~v~~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+.+....+-.||.||..+....-++ . -...++++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 0011234456666887765442222 1 235788888888888888887763221112111 346777777754
No 205
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=1.5e-05 Score=88.91 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=81.0
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCC-ccccc--CCCcCCcEEEccCC--c-CCC--C----cc
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPLSL--GSLINLRTLSFDCC--H-LED--V----AR 599 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i--~~L~~Lr~L~L~~~--~-l~~--~----~~ 599 (1205)
.+++|+.|.+++|... .++. + .+++|+.|+|..+.+.. ....+ ..+++|++|+|+.+ . ..+ . ..
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 6788888888877322 3443 2 37788888888887652 12223 36888888888532 1 111 1 11
Q ss_pred c--cccccCcEEEcccCCCCc-cchhc---cCCCccCEEeccCCCCCCccC----hhhhcCCCCCCEEEccCCcCc
Q 000975 600 V--GDLAKLEILSFRNSHIEQ-LPEQI---GNLTRLKLLDLSNCSKLKVIK----PEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 600 i--~~L~~L~~L~L~~~~l~~-lp~~i---~~L~~L~~L~L~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
+ ..+++|++|+|++|.+.. .+..+ ..+++|++|+|+.|. +...- ...+..+++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 347889999998887762 22222 357889999998754 65521 111356788999999888654
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00043 Score=73.78 Aligned_cols=187 Identities=12% Similarity=0.103 Sum_probs=98.5
Q ss_pred ccCCccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+..++|.+..++++.+.+. . ...+-|.|+|++|+||||+|+.+++... ..| +.++.+.-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~---~~i~~~~~ 81 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSDF 81 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCE---EEECSCSS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCE---EEEeHHHH
Confidence 34456778898887776655432 1 1234588999999999999999998764 222 34433321
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc--ccccCCCC------CCCc---ccc
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL--DDIGIPFW------DGEK---QSV 283 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~~~~~~~------~~~~---~~~ 283 (1205)
.+. ..+. . ......+.+......+.++++|+++....- ..+..... ..+. +.+
T Consensus 82 ~~~--------------~~~~-~-~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 82 VEM--------------FVGV-G-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp TTS--------------CCCC-C-HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred HHH--------------hhhh-h-HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 110 0011 1 222333444444456789999999653210 00000000 0000 000
Q ss_pred CCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCC-ChHHH
Q 000975 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIAV 356 (1205)
Q Consensus 284 ~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai 356 (1205)
....+..||.||.......... .-...+.++..+.++-.++++..+......++. ....+++...| .+--+
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADL 221 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHH
Confidence 1234556777776654221011 123577888888888888888877432211111 13456777777 55333
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.73 E-value=1.2e-05 Score=80.89 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=79.9
Q ss_pred CCCcceEEEeecC-CCCCC---CChhhhhCCCceeEEEeeCCCCCC-----cccccCCCcCCcEEEccCCcCCC------
Q 000975 532 QCTRLKLFLLFTE-DSSLQ---IPNQFFDGMTELLVLHLTGIHFPS-----LPLSLGSLINLRTLSFDCCHLED------ 596 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n-~~~~~---~~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~------ 596 (1205)
..+.|++|++++| .+... .....+...++|++|+|++|.|.. +...+...++|++|+|++|.|.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5677888888887 65421 112234667889999999998872 45566677889999999999876
Q ss_pred CccccccccCcEEEc--ccCCCCc-----cchhccCCCccCEEeccCCC
Q 000975 597 VARVGDLAKLEILSF--RNSHIEQ-----LPEQIGNLTRLKLLDLSNCS 638 (1205)
Q Consensus 597 ~~~i~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~L~~~~ 638 (1205)
...+...++|++|+| ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 256677788999999 7888873 45566777899999999865
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00017 Score=80.80 Aligned_cols=183 Identities=16% Similarity=0.120 Sum_probs=104.6
Q ss_pred ccCCccccCCChHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
|...+.++.|-++.+++|.+.+. -...+-|.++|++|+|||.+|+++++... .. .+.++.+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~---fi~vs~s~ 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--AT---FIRVIGSE 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CE---EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CC---eEEEEhHH
Confidence 33456678888888888876542 12356788999999999999999999876 22 24444432
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccccc------------ccCCCCCCCcc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD------------IGIPFWDGEKQ 281 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~------------~~~~~~~~~~~ 281 (1205)
-.+ ...+ ..+..+..+...-+...+++|++|+++....-.. ....+... .+
T Consensus 279 L~s--------------k~vG--esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lD 341 (467)
T 4b4t_H 279 LVQ--------------KYVG--EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQ-LD 341 (467)
T ss_dssp GCC--------------CSSS--HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHH-HH
T ss_pred hhc--------------ccCC--HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHH-hh
Confidence 111 0000 1223334444444446889999999875411000 00000000 00
Q ss_pred ccCCCCCeEEEEecCchhHHhhc---C-CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 282 SVDNQGRWTLLLASRDQHVLRIN---M-SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~~~~---~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+....+..||.||.......-+ . .-...++++.-+.++-.++|+.++.......+.. ...|++.+.|.-
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 01134455667777665433111 1 2356888988899999999988875432222211 346778887754
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=1.9e-05 Score=83.23 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=38.6
Q ss_pred hCCCceeEEEeeCCCCCCcc---cccCCCcCCcEEEccCCcCCCCccccccc--cCcEEEcccCCCC
Q 000975 556 DGMTELLVLHLTGIHFPSLP---LSLGSLINLRTLSFDCCHLEDVARVGDLA--KLEILSFRNSHIE 617 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~~i~~lp---~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~--~L~~L~L~~~~l~ 617 (1205)
.++++|+.|+|++|.|..++ ..+..+++|++|+|++|.++....+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 45667777777777776543 44556677777777777666644444444 6666666666554
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=6.9e-06 Score=86.59 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=32.8
Q ss_pred CCCcCCcEEEccCCcCCCC----ccccccccCcEEEcccCCCCccchhccCCC--ccCEEeccCCC
Q 000975 579 GSLINLRTLSFDCCHLEDV----ARVGDLAKLEILSFRNSHIEQLPEQIGNLT--RLKLLDLSNCS 638 (1205)
Q Consensus 579 ~~L~~Lr~L~L~~~~l~~~----~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~ 638 (1205)
.++++|++|+|++|.++.. ..+..+++|++|+|++|.++.+. .+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 3456666666666666552 23345666666666666665542 233333 56666666554
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.66 E-value=1.8e-05 Score=75.82 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=34.9
Q ss_pred ccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
+++|+...++++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999998888775 2233447799999999999999998864
No 212
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=0.00016 Score=78.53 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCC
Q 000975 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIV 233 (1205)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 233 (1205)
.++.++.+...+..++.+...++|++|+||||+|+.+++..... .+.+. .+++.+. ...+.++ +.+.+.+.....
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p~ 79 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSPE 79 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCCS
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhccc
Confidence 34556677777766567789999999999999999998753211 23343 5555443 3333333 334444432211
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchh-HHhhcCCCCce
Q 000975 234 RPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VLRINMSNPRI 310 (1205)
Q Consensus 234 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~-v~~~~~~~~~~ 310 (1205)
.+++-++|+|+++... ..+++...+-. ..+.+.+|++|.++. +.. ..... .
T Consensus 80 -----------------~~~~kvviIdead~lt~~a~naLLk~LEe-------p~~~t~fIl~t~~~~kl~~-tI~SR-~ 133 (305)
T 2gno_A 80 -----------------LYTRKYVIVHDCERMTQQAANAFLKALEE-------PPEYAVIVLNTRRWHYLLP-TIKSR-V 133 (305)
T ss_dssp -----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS-------CCTTEEEEEEESCGGGSCH-HHHTT-S
T ss_pred -----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC-------CCCCeEEEEEECChHhChH-HHHce-e
Confidence 1356789999998753 23333222211 234667777665543 322 12223 8
Q ss_pred EEccCCChHhHHHHHHHHh
Q 000975 311 FSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 311 ~~l~~L~~~e~~~Lf~~~~ 329 (1205)
++++++++++..+.+.+.+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998887
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00031 Score=79.13 Aligned_cols=183 Identities=15% Similarity=0.175 Sum_probs=98.8
Q ss_pred ccCCccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
|...+.++.|-+..+++|.+.+. . ...+-|.++|++|+|||++|+++++... .+ .+.++.+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~---~~~v~~~~ 241 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AA---FIRVNGSE 241 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CE---EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---eEEEecch
Confidence 44567788898888888877653 1 2345688999999999999999999875 22 34455443
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc------------cccCCCCCCCcc
Q 000975 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD------------DIGIPFWDGEKQ 281 (1205)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~------------~~~~~~~~~~~~ 281 (1205)
-.+ ...+ .....+..+...-+...+++|++|+++....-. .....+... .+
T Consensus 242 l~~--------------~~~G--e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~-ld 304 (428)
T 4b4t_K 242 FVH--------------KYLG--EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ-MD 304 (428)
T ss_dssp TCC--------------SSCS--HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH-HH
T ss_pred hhc--------------cccc--hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH-hh
Confidence 211 0000 122334444444444688999999997531100 000000000 00
Q ss_pred ccCCCCCeEEEEecCchhHHhhc---CC-CCceEEccCCChHhH-HHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 282 SVDNQGRWTLLLASRDQHVLRIN---MS-NPRIFSISTLADGEA-KSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~~~~---~~-~~~~~~l~~L~~~e~-~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
-+....+..||.||..+....-+ .+ -...+++..+++.++ ..+|+.+.......++. + ...|++.+.|.-
T Consensus 305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~-d-l~~lA~~t~G~s 379 (428)
T 4b4t_K 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA-D-LDSLIIRNDSLS 379 (428)
T ss_dssp HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC-C-HHHHHHHTTTCC
T ss_pred CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc-C-HHHHHHHCCCCC
Confidence 01134455677777766533111 11 234677876765554 45666555322111111 1 346777777754
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.60 E-value=0.00054 Score=85.61 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=96.7
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CcEEEE-EEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVD-AEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~ 222 (1205)
+..+..++||+.+++.+++.+......-+.|+|++|+|||++|+.+++....... .+..+| ++.+.-.
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred cCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 3456678999999999999998666667889999999999999999987643211 123333 2221110
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--------c---cccccCCCCCCCccccCCCCCeEE
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--------N---LDDIGIPFWDGEKQSVDNQGRWTL 291 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~---~~~~~~~~~~~~~~~~~~~~~s~i 291 (1205)
.+.... .........+.+.+.+.++.+|++||++... . ...+...+ ...+.++
T Consensus 255 -----~~~~~~--g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l---------~~~~~~~ 318 (758)
T 1r6b_X 255 -----AGTKYR--GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRV 318 (758)
T ss_dssp -----CCCCCS--SCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS---------SSCCCEE
T ss_pred -----cccccc--chHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH---------hCCCeEE
Confidence 001111 1334445555555554567899999998641 1 11121111 2345567
Q ss_pred EEecCchhHHhh------cCCCCceEEccCCChHhHHHHHHHHh
Q 000975 292 LLASRDQHVLRI------NMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 292 lvTTr~~~v~~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
|.+|........ -......+.++..+.++..+++....
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 777765543210 01122368899999999999888665
No 215
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.54 E-value=0.0017 Score=74.10 Aligned_cols=108 Identities=8% Similarity=0.140 Sum_probs=58.6
Q ss_pred CChhhhhCCC-ceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCc---CCC--CccccccccCcEEEcccCCCCccch-
Q 000975 550 IPNQFFDGMT-ELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCH---LED--VARVGDLAKLEILSFRNSHIEQLPE- 621 (1205)
Q Consensus 550 ~~~~~~~~l~-~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~---l~~--~~~i~~L~~L~~L~L~~~~l~~lp~- 621 (1205)
|....|.+++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++. ...|.++.+|+.+.+..+ ++.++.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 4455555553 3666666543 44442 336666666666665542 332 244555566665555432 444432
Q ss_pred hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 622 QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 622 ~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
.+..+.+|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 132 aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 355666677666654 24555555566666676666543
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.49 E-value=0.00024 Score=88.58 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=87.9
Q ss_pred cCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-C---Cc-EEEEEEecCCCCHHHHHH
Q 000975 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-L---FD-VVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-~---f~-~~~wv~~~~~~~~~~~~~ 222 (1205)
+....+++||+++++.+++.+......-+.++|++|+|||++|+.+++...... . .+ .++.++.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 345667999999999999999765556688999999999999999998863211 0 01 1122222
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccccccCCCCCCCccccCCCCCeEEEEecCchhHH-
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~v~- 301 (1205)
+....+ ........+.+.....++.+|++|. ..+....+...+ .....++|.||......
T Consensus 245 ------g~~~~G--~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l---------~~~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 245 ------GTKYRG--EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL---------ARGELQCIGATTLDEYRK 305 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT---------TSSSCEEEEECCTTTTHH
T ss_pred ------cccccc--hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH---------hcCCEEEEeCCChHHHHH
Confidence 000000 0111233444444446788999991 111112222222 23445677766655421
Q ss_pred -----hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 302 -----RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 302 -----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
..-......+.++..+.++..+++....
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0001123579999999999999999766
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.46 E-value=0.00021 Score=78.78 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=61.9
Q ss_pred ccCCChHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|++..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.++++.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~~~~~~---- 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA---- 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGCCSTTH----
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeeccccccccc----
Confidence 3578888888888777521 134789999999999999999999864 2222345666654433211
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
..+.++...... .. .....+...+......+++||+++..
T Consensus 92 ~~~l~g~~~~~~-~~-~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 92 VSRLIGAPPGYV-GY-EEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHHHCCCTTST-TT-TTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred HHHhcCCCCccc-cc-cccchHHHHHHhCCCeEEEEeChhhc
Confidence 111223221110 00 00012334444445679999999865
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.45 E-value=0.0017 Score=75.25 Aligned_cols=175 Identities=13% Similarity=0.131 Sum_probs=99.8
Q ss_pred CccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.+..++|.+..++++.+++.. ...+-|.|+|++|+|||++|+.+++... . ..+.++++.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~~~--- 273 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPE--- 273 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEHHH---
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEchH---
Confidence 456789999999888887641 3345688999999999999999987753 2 234444321
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCCCCCCcccc
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSV 283 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~~ 283 (1205)
+...+. + ........+.+....+++.+|+||+++.... ...+...+. ..
T Consensus 274 -------l~~~~~----g--~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld-----~~ 335 (489)
T 3hu3_A 274 -------IMSKLA----G--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD-----GL 335 (489)
T ss_dssp -------HHTSCT----T--HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH-----HS
T ss_pred -------hhhhhc----c--hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh-----cc
Confidence 111110 0 1122233333333446788999999964311 011111000 01
Q ss_pred CCCCCeEEEEecCchhHH-h-hcC--CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCC
Q 000975 284 DNQGRWTLLLASRDQHVL-R-INM--SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (1205)
Q Consensus 284 ~~~~~s~ilvTTr~~~v~-~-~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 352 (1205)
....+..||.||...... . ... .-...+.+...+.++-.++++.++.......+ ....++++.+.|.
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~ 406 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGH 406 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTC
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCC
Confidence 123455666677665321 1 111 22347899999999999999998844221111 1134667777774
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.43 E-value=0.00021 Score=76.84 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=81.2
Q ss_pred CccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH
Q 000975 150 GYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (1205)
.+..++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++... ..| +.++.+.-.+.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~---~~v~~~~~~~~ 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPF---FSMGGSSFIEM 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCC---CCCCSCTTTTS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEechHHHHHh
Confidence 34567777766666655443 1 1123477999999999999999998764 233 11222211100
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc-------------cccccCCCCCCCccccC
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSVD 284 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~~~ 284 (1205)
..+..... ...+.+.....++.+|++||++.... .......+...+...-.
T Consensus 84 ---------~~~~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 ---------FVGLGASR-------VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp ---------CSSSCSSS-------SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred ---------hcchHHHH-------HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00111000 01122222224668999999976421 00111111110000000
Q ss_pred CCCCeEEEEecCchhHHhhc-C---CCCceEEccCCChHhHHHHHHHHhC
Q 000975 285 NQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVG 330 (1205)
Q Consensus 285 ~~~~s~ilvTTr~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 330 (1205)
......||.||......... . .-...+.++..+.++-.++++..+.
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 12234667777665422101 1 1235678888999999999988774
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=0.0013 Score=75.55 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=99.1
Q ss_pred CccccCCChHHHHHHHHHhc---cC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH
Q 000975 150 GYVHFPSRNPVFQKMMESLR---DS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (1205)
.+.+++|.++.++++.+.+. .. -.+-|.|+|++|+|||++|+.+++... ..| +.++.+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPF---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCE---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCe---eeCCHHHHHHH
Confidence 45678888887776665542 11 124588999999999999999998764 222 34444432211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc----------------cccccCCCCCCCcc
Q 000975 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------------LDDIGIPFWDGEKQ 281 (1205)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~~~~~ 281 (1205)
+ .+ ........+........+.+|+||+++.... +..+...+.
T Consensus 89 ----------~----~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld----- 147 (476)
T 2ce7_A 89 ----------F----VG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD----- 147 (476)
T ss_dssp ----------C----TT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH-----
T ss_pred ----------H----hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh-----
Confidence 0 00 1122233333333345789999999976411 111100000
Q ss_pred ccCCCCCeEEEEecCchhHHhhc-CC---CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 282 SVDNQGRWTLLLASRDQHVLRIN-MS---NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 282 ~~~~~~~s~ilvTTr~~~v~~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.+....+..||.||......... .. -...+.++..+.++-.++++.++......++. + ...|++.+.|..
T Consensus 148 ~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v-~-l~~la~~t~G~s 221 (476)
T 2ce7_A 148 GFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV-N-LEIIAKRTPGFV 221 (476)
T ss_dssp HSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC-C-HHHHHHTCTTCC
T ss_pred ccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh-h-HHHHHHhcCCCc
Confidence 00123456677777766543211 11 23478888888888888888877432211111 1 345788888876
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.30 E-value=0.0011 Score=67.61 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=55.0
Q ss_pred ccccCCCh----HHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHH
Q 000975 151 YVHFPSRN----PVFQKMMESLRDS----NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (1205)
Q Consensus 151 ~~~~~gr~----~~~~~l~~~l~~~----~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (1205)
+..|++.+ ..++.+.+++... ..+.+.|+|++|+|||+||+.+++.... ....++|++++ ++..
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYVP------ELFR 95 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEHH------HHHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEhH------HHHH
Confidence 34455533 3445555555432 1267899999999999999999998763 33456676553 3444
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.+...... . .. ..+.+.+.+ . -+|||||++..
T Consensus 96 ~~~~~~~~----~-~~----~~~~~~~~~-~-~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQD----Q-TM----NEKLDYIKK-V-PVLMLDDLGAE 127 (202)
T ss_dssp HHHHC-------C-CC----HHHHHHHHH-S-SEEEEEEECCC
T ss_pred HHHHHhcc----c-hH----HHHHHHhcC-C-CEEEEcCCCCC
Confidence 44332211 1 11 122333432 2 38999999653
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=0.00047 Score=68.78 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 000975 159 PVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP 235 (1205)
Q Consensus 159 ~~~~~l~~~l~~---~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 235 (1205)
..++.+.+++.. .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+.........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~-- 91 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD-- 91 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH--
Confidence 344444444432 2346899999999999999999999875323222 23443 34444444433321111
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEEccccc
Q 000975 236 DSLVEKANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 236 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
. .+.+.+. +.-+|||||++.
T Consensus 92 -~------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 92 -T------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp -S------HHHHHHH--TCSEEEEETCSS
T ss_pred -H------HHHHHhc--CCCEEEEeCCCC
Confidence 1 2233333 456899999974
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.17 E-value=0.011 Score=67.28 Aligned_cols=120 Identities=9% Similarity=0.138 Sum_probs=70.7
Q ss_pred cceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCC---CCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcE
Q 000975 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH---FPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (1205)
Q Consensus 535 ~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~---i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 608 (1205)
.|+++.+..+ +. .+....|.++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ +.. ...|.++.+|+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4677776643 22 5666667777777777776653 44443 34666777776665443 332 355667777777
Q ss_pred EEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 609 LSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 609 L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
+.+..+ +..++. .+....+|+.+.+.. .+..+....|.. .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 777543 444432 356667777777765 255555554543 4566666543
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.17 E-value=0.0038 Score=77.70 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=84.0
Q ss_pred ccCCChHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+...+.. . ....+.++|++|+|||++|+.+++... ..-...+.++++...+....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~--- 566 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHST--- 566 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCC---
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhccccccc---
Confidence 478999988888887751 1 122689999999999999999998863 22234466666543211000
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc--cccccCCCCCC-Ccc---ccCCCCCeEEEEecCc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDG-EKQ---SVDNQGRWTLLLASRD 297 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~-~~~---~~~~~~~s~ilvTTr~ 297 (1205)
. ...+...+......+|+||+++.... ...+...+..+ +.. ........+||+||..
T Consensus 567 -------------~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 -------------S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -------------C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -------------c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 01112223333455889999976521 11111100000 000 0001245688888873
Q ss_pred hh-----H----H-----hhcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 298 QH-----V----L-----RINMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 298 ~~-----v----~-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
.. + . .....-...+.+.++++++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 0 0 1001223588999999999888877665
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.11 E-value=0.0087 Score=66.18 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred ccCCccccCCChHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHH
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (1205)
.+.....++|++..++.+...+.. .....+.++|++|+||||||+.+++... ..|. ..+.+-.....++
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~~---~~sg~~~~~~~~l- 93 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNIH---VTSGPVLVKQGDM- 93 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCEE---EEETTTCCSHHHH-
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEE---EEechHhcCHHHH-
Confidence 344666788988877777666542 2336789999999999999999999864 2211 1111111111111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccc--ccccccCCCCC-CC---------ccccC-CCCC
Q 000975 222 GRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWD-GE---------KQSVD-NQGR 288 (1205)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~-~~---------~~~~~-~~~~ 288 (1205)
..+...+ .++.++++|++.... ..+.+...... .. ...+. .-..
T Consensus 94 ---------------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 94 ---------------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ---------------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred ---------------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1111111 234567788876531 11111000000 00 00000 0011
Q ss_pred eEE-EEecCchhHHh-hcCCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHH
Q 000975 289 WTL-LLASRDQHVLR-INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (1205)
Q Consensus 289 s~i-lvTTr~~~v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 357 (1205)
..+ -.|++...+.. ........+.+++.+.++-.+++.+.+.... ..-.++.+..|++++.|.|-.+.
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHH
Confidence 122 23444433221 1112234689999999999999998873211 12235678899999999996443
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.07 E-value=0.002 Score=70.81 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=36.7
Q ss_pred ccCCChHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 153 HFPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999888888877643 2345678999999999999999998763
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.05 E-value=0.00046 Score=73.92 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=40.1
Q ss_pred ccccCCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 151 YVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+..++|++..+.++.+.+. ......|.|+|.+|+|||++|+.+++..... -...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 3457899988888877664 1223557799999999999999999865311 123455666654
No 228
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.00 E-value=0.0029 Score=73.39 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=36.4
Q ss_pred ccccCCChHHHHHHHHHh---ccC--CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 151 YVHFPSRNPVFQKMMESL---RDS--NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l---~~~--~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.+++|.+..++.+..++ ... ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 467889998877654443 322 235688999999999999999998864
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.94 E-value=0.00088 Score=81.50 Aligned_cols=180 Identities=12% Similarity=0.129 Sum_probs=97.4
Q ss_pred CccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++... .+ .+.++.+.
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~---~~~v~~~~--- 273 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CE---EEEEEHHH---
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--Ce---EEEEEhHH---
Confidence 34556676666666655442 1 2345689999999999999999998764 22 34454321
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccccc---------cccCCCCCCCccccCCCC
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD---------DIGIPFWDGEKQSVDNQG 287 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 287 (1205)
+ ... ..+ ..+.....+.+.-+...+.+|+||+++....-. .+...+.. ..+-+....
T Consensus 274 ---l----~sk----~~g--ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~-~mdg~~~~~ 339 (806)
T 3cf2_A 274 ---I----MSK----LAG--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT-LMDGLKQRA 339 (806)
T ss_dssp ---H----HSS----CTT--HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHT-HHHHCCGGG
T ss_pred ---h----hcc----cch--HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHH-HHhcccccC
Confidence 1 110 000 123334444444444678999999997642100 00000000 000011223
Q ss_pred CeEEEEecCchhHHhhcCC----CCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 288 RWTLLLASRDQHVLRINMS----NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 288 ~s~ilvTTr~~~v~~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
+..||.||........++. -.+.++++.-+.++-.++|+.+........+. -...|++++.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 4456667766543321222 24578899888888888888776432111111 1346788888765
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.0044 Score=66.12 Aligned_cols=160 Identities=11% Similarity=0.124 Sum_probs=82.7
Q ss_pred CccccCCChHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 150 GYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.+.++.|-++.++++.+.+. . .-.+=+.++|++|+||||||+.++..... ..+++....-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 44556666666666655432 0 11123899999999999999999987542 245554332211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccccc---ccC--CCCCCCccccC---CCCC
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD---IGI--PFWDGEKQSVD---NQGR 288 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---~~~--~~~~~~~~~~~---~~~~ 288 (1205)
.. .......+..+.+......+.++++|+++....... ... .....+...+. ....
T Consensus 83 ~~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 MY----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp ST----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hh----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 00 000111233333333234678999999975311000 000 00000000011 2234
Q ss_pred eEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhC
Q 000975 289 WTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVG 330 (1205)
Q Consensus 289 s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 330 (1205)
.-++.+|..+.+..-+. .-...+.++..+.++-.++|+....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 45666777766542111 2356788999999999999988763
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.019 Score=60.62 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=92.1
Q ss_pred ccCCccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+..++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++.... . ..+.++..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~---~~i~~~~~-- 83 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGS-- 83 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHH--
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--C---CEEEeeHH--
Confidence 34455677887766655544332 1 0112389999999999999999998764 1 22333321
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc----------------ccccCCCCCC
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL----------------DDIGIPFWDG 278 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~----------------~~~~~~~~~~ 278 (1205)
++ .... . . ........+.+........++++||++..... ..+...+..
T Consensus 84 ----~~----~~~~----~-~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g- 148 (254)
T 1ixz_A 84 ----DF----VEMF----V-G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG- 148 (254)
T ss_dssp ----HH----HHSC----T-T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT-
T ss_pred ----HH----HHHH----h-h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC-
Confidence 11 1110 0 0 11122333333333235689999999643110 111000000
Q ss_pred CccccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 279 EKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 279 ~~~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.......-++.||..+....... .-...+.++..+.++-.++++..+......++. ....|++.+.|.-
T Consensus 149 ----~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 149 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp ----CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred ----CCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 00122334555666665442111 234578899999988888888776332111111 1335677776643
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.77 E-value=0.012 Score=64.01 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=36.2
Q ss_pred ccCCChHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~--~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468998888888887752 333457799999999999999999864
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.69 E-value=0.0091 Score=70.57 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=77.4
Q ss_pred ccCCChHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
.++|-+...+.+.+.+. ......+.++|++|+||||+|+.++.... ..| ..+.++...+..++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG--RKF---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT--CEE---EEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCe---EEEEecccchhhhhhhHHHH
Confidence 35676666666554432 22456899999999999999999998874 222 23333332222222211111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEcccccccc------cccccCCCCCCCcccc-----C---CCCCeE
Q 000975 227 QLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQIN------LDDIGIPFWDGEKQSV-----D---NQGRWT 290 (1205)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~-----~---~~~~s~ 290 (1205)
..+.. ...+.+.+.. ...-++++|+++.... ...+...+-......+ . ......
T Consensus 157 ~ig~~----------~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 157 YVGAM----------PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp -----------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HhccC----------chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 11110 1112222221 1344888999886521 1222211110000000 0 013456
Q ss_pred EEEecCchhHHh-hcCCCCceEEccCCChHhHHHHHHHHh
Q 000975 291 LLLASRDQHVLR-INMSNPRIFSISTLADGEAKSLFEKIV 329 (1205)
Q Consensus 291 ilvTTr~~~v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 329 (1205)
||.||....... .-......+++.+++.++-.+++.++.
T Consensus 227 iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 676766543210 001122478999999999888887654
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.66 E-value=0.018 Score=61.88 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=93.1
Q ss_pred ccCCccccCCChHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
+...+..++|.+..++++.+... . .-.+-+.|+|++|+||||||+.++.... . ..+.++..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~---~~i~~~~~-- 107 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGS-- 107 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHH--
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--C---CEEEecHH--
Confidence 34456678888877666554432 1 0112389999999999999999998764 1 23344321
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccccc------------c----ccccCCCCCC
Q 000975 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------L----DDIGIPFWDG 278 (1205)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~----~~~~~~~~~~ 278 (1205)
++ ..... . ........+.+......+.++|+||++.... + ..+...+..
T Consensus 108 ----~~----~~~~~-----~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg- 172 (278)
T 1iy2_A 108 ----DF----VEMFV-----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG- 172 (278)
T ss_dssp ----HH----HHSTT-----T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT-
T ss_pred ----HH----HHHHh-----h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC-
Confidence 11 11000 0 1112233344433334568999999964210 0 011000000
Q ss_pred CccccCCCCCeEEEEecCchhHHhhc----CCCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 279 EKQSVDNQGRWTLLLASRDQHVLRIN----MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 279 ~~~~~~~~~~s~ilvTTr~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
........++.||..+.+.... ..-...++++..+.++-.++++..+......++. ....+++.+.|..
T Consensus 173 ----g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 173 ----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp ----CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred ----CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 0012233455566665543211 1234578899999998888888777432111111 1335677777654
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.45 E-value=0.0063 Score=75.94 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=60.5
Q ss_pred ccCCChHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~---------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (1205)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++...... .
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----~ 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----T 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----C
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----h
Confidence 367888888887776651 1123689999999999999999998763 234566665432210 0
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+.+.+|.+ ++. ...+....+...+......+|+||+++..
T Consensus 530 ~~~l~g~~-~g~-~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAP-PGY-VGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCC-SCS-HHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCC-CCC-cCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 01111211 111 11111223344455456789999999865
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.43 E-value=0.019 Score=66.29 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=93.0
Q ss_pred CCccccCCChHHHHHHHHHhc---cC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 149 RGYVHFPSRNPVFQKMMESLR---DS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
..+..++|.++.+.++.+... .. -.+-|.|+|++|+||||||+.++.... . ..+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~---~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEehhHHHH
Confidence 345667888887766655432 11 123489999999999999999998764 2 234454432111
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHc---CCeEEEEEccccccccc----------------ccccCCCCC
Q 000975 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK---KKRVLVILDDIWTQINL----------------DDIGIPFWD 277 (1205)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~---~k~~LlVlDdv~~~~~~----------------~~~~~~~~~ 277 (1205)
. .. . .....+...+.. ..+.++++|+++....- ..+...+..
T Consensus 103 ~--------------~~---g--~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 M--------------FV---G--VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp S--------------CT---T--HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred h--------------hh---h--hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 00 0 011122222222 23579999999753210 011000000
Q ss_pred CCccccCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCh
Q 000975 278 GEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (1205)
Q Consensus 278 ~~~~~~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 353 (1205)
.....+..|+.||..+....-.. .-...+.++..+.++-.++++.++......++. ....|++.+.|..
T Consensus 164 -----~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 -----FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp -----CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred -----cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 01123445666777665432111 123578899999998888888776332111111 1345777777765
No 237
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.37 E-value=0.012 Score=62.41 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQAL 249 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 249 (1205)
++-|.|++|+||||||..++.....+..-..++||+....++.. .++.++.+... ..+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998876533223578999988877753 37778876432 223333313333443
Q ss_pred ---HcCCeEEEEEcccccc
Q 000975 250 ---KKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 250 ---~~~k~~LlVlDdv~~~ 265 (1205)
.+++.-++|+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4457889999988764
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.32 E-value=0.01 Score=65.10 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=58.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 247 (1205)
..++.|+|++|+||||||..++....... ..++|++....++.. .++.++..... ..+..+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46899999999999999999998865322 357888887766644 55666655321 2244555555544
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 444455668999987654
No 239
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.27 E-value=0.017 Score=63.46 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=59.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 239 (1205)
..++.|+|.+|+||||+|..++....... .-..++|++....++..++. ++++.++.+.. ...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999998753211 13478999988877766654 45566665431 111222
Q ss_pred ---HHHHHHHHHHHc-CCeEEEEEccccc
Q 000975 240 ---EKANQLRQALKK-KKRVLVILDDIWT 264 (1205)
Q Consensus 240 ---~~~~~l~~~l~~-~k~~LlVlDdv~~ 264 (1205)
+....+...+.+ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 233445555554 5677889998754
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.25 E-value=0.0027 Score=67.70 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=45.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEe--cCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV--THTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
.+++.|+|++|+|||+||.+++.... ..++|+++ .+..+. - . .........+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~-------------~--~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG-------------Y--N-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT-------------C--B-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh-------------h--h-cCHHHHHHHHHHHHh
Confidence 35678999999999999999988621 12456666 222110 0 0 244555566666676
Q ss_pred cCCeEEEEEcccccc
Q 000975 251 KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 251 ~~k~~LlVlDdv~~~ 265 (1205)
+ .+ +||+|++...
T Consensus 182 ~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 Q-HR-VIVIDSLKNV 194 (331)
T ss_dssp H-CS-EEEEECCTTT
T ss_pred h-CC-EEEEeccccc
Confidence 4 44 9999998653
No 241
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.25 E-value=0.099 Score=58.89 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...+|.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999988764
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.24 E-value=0.012 Score=61.63 Aligned_cols=92 Identities=15% Similarity=0.076 Sum_probs=57.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSLV 239 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 239 (1205)
..++.|+|++|+||||||+.++....... .-..++|++....+....+ ..+++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999999998643211 2357899988776555444 345555554321 111222
Q ss_pred H---HHHHHHHHHHcCCeEEEEEcccccc
Q 000975 240 E---KANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 240 ~---~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+ ....+.+.+...+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 2 2333445554457788999987543
No 243
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.021 Score=63.16 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=58.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC------------CCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV------------RPD 236 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~ 236 (1205)
..++.|+|.+|+||||+|..++....... .-..++|++....++...+. .+++.++.+.. ...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHH
Confidence 46899999999999999999998743211 23578999998877766654 45566655421 111
Q ss_pred CHHHHHHHHHHHHHc--CCeEEEEEccccc
Q 000975 237 SLVEKANQLRQALKK--KKRVLVILDDIWT 264 (1205)
Q Consensus 237 ~~~~~~~~l~~~l~~--~k~~LlVlDdv~~ 264 (1205)
...+....+.+.+.+ .+.-+||+|.+..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 112233344455554 4667888887754
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.20 E-value=0.0088 Score=74.26 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=87.0
Q ss_pred CCccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 149 RGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
..+..++|.+..++++.+++.. .....|.|+|++|+||||||+.++.... .. .+.++.+.
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~---~i~v~~~~-- 273 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPE-- 273 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CE---EEEEEHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--Cc---EEEEEchH--
Confidence 3456688888888887776641 2345789999999999999999987653 22 24443211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEccccccccc-------------ccccCCCCCCCccc
Q 000975 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-------------DDIGIPFWDGEKQS 282 (1205)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-------------~~~~~~~~~~~~~~ 282 (1205)
+ .....+ ........+.+......+.++++|+++....- ..+...+ .+
T Consensus 274 ----l--------~~~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll-~g---- 334 (806)
T 1ypw_A 274 ----I--------MSKLAG--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM-DG---- 334 (806)
T ss_dssp ----H--------SSSSTT--HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHH-HS----
T ss_pred ----h--------hhhhhh--hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHh-hh----
Confidence 1 000000 12223333444333347789999999653110 0010000 00
Q ss_pred cCCCCCeEEEEecCchhHHhhcC----CCCceEEccCCChHhHHHHHHHHhC
Q 000975 283 VDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVG 330 (1205)
Q Consensus 283 ~~~~~~s~ilvTTr~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 330 (1205)
.....+..||.||.......... .-...+.+...+.++-.+++...+.
T Consensus 335 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred hcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 01223456666666653221111 1224678888889999999887764
No 245
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.19 E-value=0.015 Score=59.87 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCC-----------C-CCCCCHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE-----------I-VRPDSLVE 240 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----------~-~~~~~~~~ 240 (1205)
..++.|+|++|+||||+|..++. .. -..++|++.....+...+. .+.+.++.. . ........
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999998 21 2468888877755555543 344433321 1 11101122
Q ss_pred HHHHHHHHHHcCCeEEEEEcccccc
Q 000975 241 KANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 ~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
....+.. +...+.-+||+|.+...
T Consensus 94 ~~~~~~~-l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKK-TVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHH-HCCTTEEEEEEECCCCC
T ss_pred HHHHHHH-HhhcCCCEEEEcCcHHH
Confidence 2333332 32224779999987543
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.18 E-value=0.23 Score=56.33 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=51.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (1205)
..++|.++|.+|+||||+|..++.....+.. ..+.-+++.. .....+.+.......+.+.-.. .+..+......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 4679999999999999999999988875412 2455566553 2333343444455555432221 133443344444
Q ss_pred HHHcCCeEEEEEccc
Q 000975 248 ALKKKKRVLVILDDI 262 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv 262 (1205)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444222225667764
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.09 E-value=0.007 Score=63.15 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
..+++|+|++|+|||||++.++....... ..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc
Confidence 36899999999999999999997654322 2466776544
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.00 E-value=0.018 Score=63.47 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=56.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 247 (1205)
..++.|+|.+|+||||||..++...... -..++|++....++.. .++.++..... ..+..+....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999999776532 2467899988766543 35566654321 1233443333333
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
...+.+.-+||+|.+...
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 333345669999998654
No 249
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.99 E-value=0.0093 Score=75.11 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=42.7
Q ss_pred ccCCChHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 153 HFPSRNPVFQKMMESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~---------~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
.++|++..++.+...+... ....+.|+|++|+|||++|+.+++.... .-...+.++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~--~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEY 627 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS--SGGGEEEECTTTC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhc
Confidence 5789999888888777521 1247899999999999999999987641 1123455665543
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.93 E-value=0.021 Score=63.29 Aligned_cols=86 Identities=21% Similarity=0.228 Sum_probs=56.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (1205)
..++.|+|.+|+||||+|..++...... -..++|++....++.. .++.++.+.. ...+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4688999999999999999998876532 2468999988776643 2556665432 12234444444443
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.....+.-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 333345568999988654
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.90 E-value=0.0087 Score=56.99 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=30.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
....++|+|+.|+|||||++.++......+ + .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 556899999999999999999999876321 2 256666544
No 252
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.099 Score=58.92 Aligned_cols=57 Identities=25% Similarity=0.219 Sum_probs=35.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGL 230 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 230 (1205)
...+|.++|++|+||||++..++...+.++ . .+..+++.. .+...+-+....+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecCccchhHHHHHHHHHHhcCC
Confidence 357999999999999999999998876433 2 344444432 11222333444444444
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.83 E-value=0.016 Score=63.64 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=57.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC---------CC-----cEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED---------LF-----DVVVDAEVTHTPDWKEICGRIADQLGLEIV----- 233 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----- 233 (1205)
..++.|+|.+|+||||+|..++....... .. ..++|++....++..++. ++++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcC
Confidence 46899999999999999999987642111 11 578999988887776665 44566665421
Q ss_pred ----CCCCHH---HHHHHHHHHHHc-CCeEEEEEccccc
Q 000975 234 ----RPDSLV---EKANQLRQALKK-KKRVLVILDDIWT 264 (1205)
Q Consensus 234 ----~~~~~~---~~~~~l~~~l~~-~k~~LlVlDdv~~ 264 (1205)
...+.. +....+.+.+.+ .+.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 111222 223344455554 4556888887654
No 254
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.77 E-value=0.0076 Score=65.12 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+.+.++|++|+|||++|+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999874
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.75 E-value=0.024 Score=62.55 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 247 (1205)
.+++.|.|.+|+||||||..++....... ..++|++....++.. .++.++.+... ..+..+....+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 46899999999999999999998765332 368899988776643 24556654321 1133333333333
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
.....+.-+||+|.+...
T Consensus 136 l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHTCCSEEEEECGGGC
T ss_pred HHhccCCCEEEEcCHHHh
Confidence 333345568999987653
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.71 E-value=0.016 Score=62.85 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=38.6
Q ss_pred CccccCCC----hHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 000975 150 GYVHFPSR----NPVFQKMMESLRDS---NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (1205)
Q Consensus 150 ~~~~~~gr----~~~~~~l~~~l~~~---~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (1205)
.+..|++. ...++.+.+++... ....+.|+|++|+|||+||+.+++....+..+ .++++++
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 34455542 33444455555531 24678899999999999999999987512223 3455554
No 257
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.57 E-value=0.004 Score=59.02 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred ccCCChHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 153 HFPSRNPVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~--~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 567998888888877652 233447799999999999999988653
No 258
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.55 E-value=0.29 Score=52.42 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=52.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC-CCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVR---PDSLVEKANQLRQA 248 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 248 (1205)
..+++++|.+|+||||++..++.....++ ..+.+++.... +...+.++...+..+.+... ..+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998876432 34566665533 22333344555666554321 12344444444455
Q ss_pred HHcCCeEEEEEccc
Q 000975 249 LKKKKRVLVILDDI 262 (1205)
Q Consensus 249 l~~~k~~LlVlDdv 262 (1205)
++...-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222236788854
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.35 E-value=0.049 Score=61.01 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCH-
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSL- 238 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 238 (1205)
..++.|+|++|+|||||+..++-..... ..-..++|++....+....+ +.+++.++.... .....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 4689999999999999999876443211 12356899988776665554 446676665421 11122
Q ss_pred --HHHHHHHHHHHHcCCeEEEEEccccc
Q 000975 239 --VEKANQLRQALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 239 --~~~~~~l~~~l~~~k~~LlVlDdv~~ 264 (1205)
.+....+.+.+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22233444444445678889998654
No 260
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.26 E-value=0.043 Score=61.99 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=80.8
Q ss_pred CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCcc-cccCCCcCCcEEEccCCcCCC--CccccccccCcE
Q 000975 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~ 608 (1205)
.+.+|+.+.+..+- ..+....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ +.. ...|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 55666666665432 1455566677777777777654 55553 34667777777777543 333 356777777887
Q ss_pred EEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccC
Q 000975 609 LSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (1205)
Q Consensus 609 L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~ 661 (1205)
+.+.++.++.++. .+.++.+|+.+.+.. .++.+....|.++.+|+.+.+..
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 7777777777753 467777777777764 26667666677777777776543
No 261
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.22 E-value=0.16 Score=56.19 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=95.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
.-.++..++|+.|.||++.|+.+....... .|+....+.+....++.++...+.. .-+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~pl- 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA--------------------MSL- 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH--------------------HHH-
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC--------------------cCC-
Confidence 446789999999999999999999876532 3433222233333444443322210 011
Q ss_pred cCCeEEEEEccccc-c--cccccccCCCCCCCccccCCCCCeEEEEecCc-------hhHHhhcCCCCceEEccCCChHh
Q 000975 251 KKKRVLVILDDIWT-Q--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRD-------QHVLRINMSNPRIFSISTLADGE 320 (1205)
Q Consensus 251 ~~k~~LlVlDdv~~-~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~-------~~v~~~~~~~~~~~~l~~L~~~e 320 (1205)
-+++-++|+|+++. . ..++++...+.. ..+++.+|++|.. ..+...-......++..++++++
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~-------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGL-------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTT-------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhc-------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 14667889999876 3 334444332222 2346677766543 22333124456789999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHhcCCChHHHHH
Q 000975 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (1205)
Q Consensus 321 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 358 (1205)
....+.+.+..... .-..+.+..+++.++|...++..
T Consensus 147 l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHH
Confidence 99888887732111 12246778899999998876654
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.21 E-value=0.052 Score=56.20 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCH-
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSL- 238 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 238 (1205)
..+++|+|++|+|||||++.++...... .....++|+.-........ ...+.+..+.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 4689999999999999999998854321 1234678887665444333 3344454443311 00011
Q ss_pred --HHHHHHHHHHHH-----cCCeEEEEEccccc
Q 000975 239 --VEKANQLRQALK-----KKKRVLVILDDIWT 264 (1205)
Q Consensus 239 --~~~~~~l~~~l~-----~~k~~LlVlDdv~~ 264 (1205)
......+...+. ..+.-++|+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 111233444444 45677899998654
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.19 E-value=0.04 Score=59.94 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCcEEEEEEecCCCCHHHHHHHHHHHhCCCC---CCCC
Q 000975 162 QKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEVTHTPDWKEICGRIADQLGLEI---VRPD 236 (1205)
Q Consensus 162 ~~l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~ 236 (1205)
-++++.+.. .....++|+|++|+|||||++.+.+....+ ..++ ++++-+++... ++ .++.+.+.... ...+
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~--Ev-~~~~~~~~~~vV~atade 237 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE--EV-TEMQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH--HH-HHHHTTCSSEEEEECTTS
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH--HH-HHHHHHhCeEEEEeCCCC
Confidence 345555542 234579999999999999999998876432 2333 44677776542 21 22333331100 0111
Q ss_pred CHHHH------HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 237 SLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 237 ~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
..... +-.+-+++. +++.+||++||+...
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 21111 112223333 479999999998764
No 264
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.12 E-value=0.063 Score=60.58 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=100.1
Q ss_pred CCcEEEccCCCCCCCCCcc--CCCcceEEEeecCCCCCCCChhhhhCCCceeEEEeeCCCCCCccc-ccCCCcCCcEEEc
Q 000975 513 NPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSF 589 (1205)
Q Consensus 513 ~~r~lsl~~~~~~~l~~~~--~~~~Lr~L~l~~n~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L 589 (1205)
.++.+.+.. .+..+.... .+..|+.+.+..+ +. .+....|.++..|+.+.+..+ +..++. .|.++.+|+.+.+
T Consensus 218 ~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 218 NLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred ccceeeecc-ceeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 445555542 233333322 7889999999765 32 577788899999999999754 666654 5899999999999
Q ss_pred cCCcCCC--CccccccccCcEEEcccCCCCccch-hccCCCccCEEeccCCCCCCccChhhhcCCCC
Q 000975 590 DCCHLED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSR 653 (1205)
Q Consensus 590 ~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~ 653 (1205)
.++.++. ...|.++.+|+.+.+..+ ++.++. .+.++.+|+.+.+.. .++.+....|.+...
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGSSI 357 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTSSC
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCCCC
Confidence 9888876 478999999999999754 777754 588999999998875 267777766766543
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.06 E-value=0.097 Score=56.17 Aligned_cols=86 Identities=19% Similarity=0.099 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (1205)
...+|+++|++|+||||++..++.......- ..+..++... .....+.+....+..+.+........+....+ ..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al-~~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAK-ELF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHH-HHG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHH-HHh-
Confidence 4579999999999999999999988764221 2455555543 23334444444555554432222332322222 222
Q ss_pred cCCeEEEEEcc
Q 000975 251 KKKRVLVILDD 261 (1205)
Q Consensus 251 ~~k~~LlVlDd 261 (1205)
.+.=++|+|-
T Consensus 181 -~~~dlvIiDT 190 (296)
T 2px0_A 181 -SEYDHVFVDT 190 (296)
T ss_dssp -GGSSEEEEEC
T ss_pred -cCCCEEEEeC
Confidence 2344778883
No 266
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.02 E-value=0.02 Score=57.96 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 156 SRNPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 156 gr~~~~~~l~~~l~~---~~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
.|++.++.+.+.+.. ....+|+|.|+.|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677778777763 34578999999999999999999987653
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.76 E-value=0.027 Score=57.35 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 159 PVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 159 ~~~~~l~~~l~~--~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
+.+++|.+.+.. ....+|+|+|+.|+|||||++.+.......+ ....+|....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d~ 60 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecCC
Confidence 455666666653 3457999999999999999999998876421 1244555443
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.64 E-value=0.13 Score=56.08 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (1205)
..++.|.|.+|+||||+|..++.....++ ..++|++... +..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHHHH
Confidence 46899999999999999999998765433 5788887663 455665555543
No 269
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.58 E-value=0.18 Score=56.78 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=64.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCC------C---
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE------I--- 232 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~--- 232 (1205)
+++.+.. .+-..++|+|.+|+|||+|++.+.+.... .+-+.++++-+.+.. ...++++.+.+.=..+ .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4555541 23356899999999999999999987632 445778888888765 4566777776543222 0
Q ss_pred ---CCCCCHHH------HHHHHHHHHHc--CCeEEEEEcccccc
Q 000975 233 ---VRPDSLVE------KANQLRQALKK--KKRVLVILDDIWTQ 265 (1205)
Q Consensus 233 ---~~~~~~~~------~~~~l~~~l~~--~k~~LlVlDdv~~~ 265 (1205)
...+.... ..-.+-+++.. ++.+||++||+-..
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 01112111 22334555553 79999999998654
No 270
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.49 E-value=0.13 Score=53.90 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..++.|.|++|+||||+|..++...... -..++|++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 4589999999999999999888765432 245778876543
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.43 E-value=0.079 Score=58.51 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----cEEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCC-
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF----DVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDS- 237 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~- 237 (1205)
...++.|+|++|+|||||++.++......... ..++|++....+....+ ..+++..+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34689999999999999999999875311111 34589987665544433 445555443211 0001
Q ss_pred --HHHHHHHHHHHHHc-----CCeEEEEEcccccc
Q 000975 238 --LVEKANQLRQALKK-----KKRVLVILDDIWTQ 265 (1205)
Q Consensus 238 --~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~ 265 (1205)
..+....+...+.+ .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 12223334444443 46789999987553
No 272
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.43 E-value=0.059 Score=49.69 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=42.3
Q ss_pred cEEEcccCCCC--ccchhccCCCccCEEeccCCCCCCccChhhhcCCCCCCEEEccCCcCc
Q 000975 607 EILSFRNSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (1205)
Q Consensus 607 ~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~ 665 (1205)
..++.+++.++ .+|..+. .+|++|+|++|. ++.++++.|..+++|++|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 36777777777 7776432 468888888855 88888888888888888888887553
No 273
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.41 E-value=0.023 Score=63.46 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=37.4
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++..+..++|.+..++.+..........-|.|+|++|+|||++|+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3445667899988666544443332233488999999999999999998753
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.36 E-value=0.11 Score=69.26 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=60.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (1205)
..+.|.|+|++|+|||+||.++...... .=..++|+++....+... ++.++.+.. ..+..++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3578999999999999999999887653 334678888888776555 556664322 1223445555555
Q ss_pred HHHHcCCeEEEEEccccc
Q 000975 247 QALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 247 ~~l~~~k~~LlVlDdv~~ 264 (1205)
+..++.+.-+||+|.+.-
T Consensus 1499 ~lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHhcCCCCEEEEcChhH
Confidence 555556788999999863
No 275
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.32 E-value=0.2 Score=69.27 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (1205)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+++.+...+....... . .+..--..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~-g------~~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSK-G------LTLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETT-T------EEEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccC-C------ccccCCCCCc
Confidence 457799999999999998776543 222 4566777877777777776666554221000 0 0000000257
Q ss_pred eEEEEEcccccc
Q 000975 254 RVLVILDDIWTQ 265 (1205)
Q Consensus 254 ~~LlVlDdv~~~ 265 (1205)
+.++++||+.-+
T Consensus 1337 ~~VlFiDEinmp 1348 (2695)
T 4akg_A 1337 NLVLFCDEINLP 1348 (2695)
T ss_dssp CEEEEEETTTCS
T ss_pred eEEEEecccccc
Confidence 889999996543
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.15 E-value=0.027 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998753
No 277
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.10 E-value=0.069 Score=49.23 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=24.6
Q ss_pred EEEeeCCCCC--CcccccCCCcCCcEEEccCCcCCC--CccccccccCcEEEcccC
Q 000975 563 VLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNS 614 (1205)
Q Consensus 563 ~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~ 614 (1205)
+++.+++.++ .+|..+. .+|++|+|++|.|+. +..|..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555565555 5554322 245555555555444 233444455555555544
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.07 E-value=0.03 Score=54.94 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|+|.|++|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 279
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.06 E-value=0.12 Score=58.34 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=54.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhC--------CCCCCCCCHHH----
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLG--------LEIVRPDSLVE---- 240 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 240 (1205)
..++|+|.+|+||||||+.+......+ +.+.++++.+.+.. ...+++..+...-. ....+.+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468899999999999999999876543 23445677777654 34455554433200 01111101111
Q ss_pred HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 241 KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 ~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
..-.+.+++. +++++|+++||+...
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1123445554 379999999998553
No 280
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.05 E-value=0.15 Score=54.69 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC-HHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD-WKEICGRIADQLGLEIVR---PDSLVEKANQLRQ 247 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 247 (1205)
...+++|+|.+|+||||++..++......+ ..+.+++...... ....+..+.+..+..... .....+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999998876432 3455665543221 112233445555554321 1233343333333
Q ss_pred HHHcCCeEEEEEccc
Q 000975 248 ALKKKKRVLVILDDI 262 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv 262 (1205)
.....+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 332123446788865
No 281
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.02 E-value=0.02 Score=58.30 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=60.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP--DSLVEKANQLRQAL 249 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l 249 (1205)
...++.|+|..|+||||++..++++...++ . .++.+...... . ....+++.++...... ....+..+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346889999999999999999998876433 2 33344332221 1 1224455555443221 12222222222222
Q ss_pred HcCCeEEEEEccccccc--ccccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 250 KKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 250 ~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
..++.-+||+|.+.... .++.+. .+ ...+-.||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L---------~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-IL---------AENGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HH---------HHTTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HH---------HhCCCeEEEEecccc
Confidence 21234599999997632 222221 11 123678888888554
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.01 E-value=0.53 Score=51.10 Aligned_cols=58 Identities=24% Similarity=0.226 Sum_probs=39.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCC
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGL 230 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 230 (1205)
....+++|+|+.|+||||+++.++...+... ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4567999999999999999999998876432 2344444332 22344445566666664
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.91 E-value=0.036 Score=55.94 Aligned_cols=27 Identities=44% Similarity=0.433 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|+|++|+||||+|+.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998763
No 284
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.86 E-value=0.25 Score=53.65 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
..++.|.|.+|+||||+|..++..... .-..++|++... +..++...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHHHH
Confidence 468999999999999999999988764 224677776643 44555555543
No 285
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.86 E-value=0.17 Score=54.35 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCH--HHHHHHHHHHhCCCCCCC---CCHHHH-HHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW--KEICGRIADQLGLEIVRP---DSLVEK-ANQL 245 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~---~~~~~~-~~~l 245 (1205)
...+|+|+|++|+||||++..++......+ ..+.+++... +.. .+-+...++..+.+.... ...... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357899999999999999999998876432 2455565542 222 222344555555432111 122222 2334
Q ss_pred HHHHHcCCeEEEEEcccc
Q 000975 246 RQALKKKKRVLVILDDIW 263 (1205)
Q Consensus 246 ~~~l~~~k~~LlVlDdv~ 263 (1205)
...+.. +.-++|+|..-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 444443 34477888653
No 286
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.75 E-value=0.045 Score=60.43 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=36.5
Q ss_pred ccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|++..++.+...+... .-+.++|++|+|||++|+.+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999988888777653 3578999999999999999988753
No 287
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.74 E-value=0.055 Score=53.49 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=47.2
Q ss_pred hCCCceeEEEeeCC-CCC-----CcccccCCCcCCcEEEccCCcCCC--C----ccccccccCcEEEcccCCCCc-----
Q 000975 556 DGMTELLVLHLTGI-HFP-----SLPLSLGSLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIEQ----- 618 (1205)
Q Consensus 556 ~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~~----- 618 (1205)
..-+.|+.|+|+++ .|. .+-..+..-+.|+.|+|++|.|.+ . ..+..-+.|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44556777777664 554 234455556677777777777665 1 233344667777777776652
Q ss_pred cchhccCCCccCEEeccC
Q 000975 619 LPEQIGNLTRLKLLDLSN 636 (1205)
Q Consensus 619 lp~~i~~L~~L~~L~L~~ 636 (1205)
|-..+..=+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 223344445566666664
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.69 E-value=0.031 Score=55.03 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVV 193 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v 193 (1205)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.66 E-value=0.04 Score=54.80 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+.|.|+|++|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 290
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.56 E-value=0.57 Score=53.99 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=35.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC-CCCHHHHHHHHHHHhCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLE 231 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 231 (1205)
..++|+|+|.+|+||||++.+++.....++ . .+.-|+... .+...+.+.......+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G-~-kVllVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG-W-KTCLICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-C-eEEEEeccccchhHHHHHHHHhhccCce
Confidence 356899999999999999999998876432 2 344555432 222233334444444443
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.51 E-value=0.04 Score=54.51 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998865
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.46 E-value=0.036 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998754
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.45 E-value=0.04 Score=54.48 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVAR 195 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~ 195 (1205)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 294
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.41 E-value=0.15 Score=57.53 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=65.4
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHHHhCCC-------C--
Q 000975 164 MMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE-------I-- 232 (1205)
Q Consensus 164 l~~~l~-~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~-- 232 (1205)
+++.+. -.+-..++|.|.+|+|||+|+..+.+.... .+-+.++++-+.+.. ...++++.+.+.=..+ .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 355554 123346899999999999999999988642 455788999998775 4567777776542222 0
Q ss_pred ----CCCCCH------HHHHHHHHHHHHc--CCeEEEEEcccccc
Q 000975 233 ----VRPDSL------VEKANQLRQALKK--KKRVLVILDDIWTQ 265 (1205)
Q Consensus 233 ----~~~~~~------~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 265 (1205)
...+.. ....-.+-++++. ++.+|+++||+...
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 001111 2223445566654 69999999998653
No 295
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.39 E-value=0.041 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..+|+|+|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999765
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.39 E-value=0.051 Score=54.82 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.5
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.....+|+|+|++|+||||+|+.++....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998875
No 297
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.39 E-value=0.072 Score=59.62 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=35.4
Q ss_pred cCCChHHHHHHHHHhc-------------c--CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 154 FPSRNPVFQKMMESLR-------------D--SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888877762 1 1235688999999999999999998763
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.36 E-value=0.051 Score=54.85 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
....+|+|+|+.|+||||+|+.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998876
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.35 E-value=0.084 Score=57.24 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 158 NPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 158 ~~~~~~l~~~l~----~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+...+.+++.+. ......|.|+|++|+||||+|+.++....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445555665553 34456799999999999999999998765
No 300
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.34 E-value=0.071 Score=54.97 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 161 FQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 161 ~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+.+.+.+.......|+|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444444445678899999999999999999998754
No 301
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.32 E-value=0.27 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..+++|+|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999843
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.25 E-value=0.092 Score=50.59 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
..++++|+|+.|+||||++..+....+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999988764
No 303
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.21 E-value=0.096 Score=55.97 Aligned_cols=55 Identities=13% Similarity=-0.048 Sum_probs=35.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-CCcEEEEEEecCCCCHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKED-LFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
....+|+|+|..|+||||+|+.+........ ....+..|+.....-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 3457899999999999999999998776421 122344446554433334444443
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.21 E-value=0.043 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 305
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.17 E-value=0.054 Score=58.85 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=36.2
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCcEEEEEEecCC
Q 000975 162 QKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEVTHT 214 (1205)
Q Consensus 162 ~~l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 214 (1205)
-++++.+.. ..-..++|+|.+|+|||+|++.+++..... ..+. ++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 456666652 234568999999999999999999876542 2233 356777765
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.12 E-value=0.052 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.12 E-value=0.049 Score=53.82 Aligned_cols=26 Identities=46% Similarity=0.422 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|.|+|++|+||||+|+.++....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 308
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.09 E-value=0.062 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.++|.|.|++|+||||.|+.++..+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999998874
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.06 E-value=0.057 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.05 E-value=0.058 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999988763
No 311
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.05 E-value=0.093 Score=56.77 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=32.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
++.+||+|.|-|||||||.|..++.-....++ .+.-|++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecCCC
Confidence 35789999999999999999999988765443 4666776643
No 312
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.01 E-value=0.049 Score=53.88 Aligned_cols=106 Identities=13% Similarity=0.008 Sum_probs=67.7
Q ss_pred CCCcceEEEeecC-CCCCC---CChhhhhCCCceeEEEeeCCCCC-----CcccccCCCcCCcEEEccCCcCCC--C---
Q 000975 532 QCTRLKLFLLFTE-DSSLQ---IPNQFFDGMTELLVLHLTGIHFP-----SLPLSLGSLINLRTLSFDCCHLED--V--- 597 (1205)
Q Consensus 532 ~~~~Lr~L~l~~n-~~~~~---~~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--~--- 597 (1205)
+-+.|+.|++++| .+... .....+..-..|+.|+|++|.|. .+-..+..=+.|++|+|++|.|.. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456777888764 44310 11123456678999999999886 455556667789999999999876 2
Q ss_pred -ccccccccCcEEEcccCCC---C-----ccchhccCCCccCEEeccCC
Q 000975 598 -ARVGDLAKLEILSFRNSHI---E-----QLPEQIGNLTRLKLLDLSNC 637 (1205)
Q Consensus 598 -~~i~~L~~L~~L~L~~~~l---~-----~lp~~i~~L~~L~~L~L~~~ 637 (1205)
..+..-+.|++|+|+++.. . .+-..+..=+.|+.|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3455556799999986533 3 12233444456667766553
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.99 E-value=0.094 Score=52.09 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...+|.|.|++|+||||+|+.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999998764
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.99 E-value=0.049 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.|.|++|+||||+|+.++....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 315
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.97 E-value=0.056 Score=62.47 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=36.0
Q ss_pred ccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|++..++.+...+... .-|.++|++|+|||++|+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3679999888888777643 3578999999999999999998653
No 316
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.97 E-value=0.056 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.|.|++|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.91 E-value=0.061 Score=54.60 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|+|+.|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987653
No 318
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.90 E-value=0.073 Score=54.63 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=29.0
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 161 FQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 161 ~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 18 ~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 18 AEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444345678999999999999999999998764
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.89 E-value=0.45 Score=53.47 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=48.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHH--HHHHHHHHHhCCCCCC---CCCHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK--EICGRIADQLGLEIVR---PDSLVEKANQLR 246 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 246 (1205)
...+|+++|.+|+||||++..++.....+ -..+..++... .... +.+....+..+.+.-. ..+..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~-~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc-cCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35689999999999999999999887643 23455555532 3322 2234445555554211 113333334344
Q ss_pred HHHHcCCeEEEEEccc
Q 000975 247 QALKKKKRVLVILDDI 262 (1205)
Q Consensus 247 ~~l~~~k~~LlVlDdv 262 (1205)
+.++...-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4443122225666743
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.83 E-value=0.068 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999886
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.83 E-value=0.095 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+|.|.|++|+||||+|+.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 322
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.80 E-value=0.069 Score=52.44 Aligned_cols=24 Identities=46% Similarity=0.547 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.79 E-value=0.065 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+|+|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 324
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.79 E-value=0.098 Score=58.83 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998763
No 325
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.72 E-value=0.066 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.72 E-value=0.057 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998875
No 327
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.71 E-value=0.055 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+.|.|+|++|+|||||++++.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987753
No 328
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.67 E-value=0.19 Score=61.20 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCccccCCChHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 149 RGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
..+..+.|-++.++++.+.+.- ...+-|.++|++|+|||.+|+++++... .. ++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEecc--
Confidence 3455667777777776665430 1234578999999999999999999865 21 223221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
.+ ++... .+. + +..+..+.+.-++..+++|+||+++..
T Consensus 545 --~~----l~s~~----vGe-s-e~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 --PE----LLTMW----FGE-S-EANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp --HH----HHTTT----CSS-C-HHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred --ch----hhccc----cch-H-HHHHHHHHHHHHHcCCceeechhhhHH
Confidence 12 11111 111 2 344555666555568899999999864
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.67 E-value=0.071 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|.|++|+||||+|+.++....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998763
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.67 E-value=0.054 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999998764
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.65 E-value=0.071 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|.|+.|+||||+|+.+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.63 E-value=0.14 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
..|+|.|++|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999998763
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.61 E-value=0.069 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 334
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.51 E-value=0.33 Score=64.81 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (1205)
.+++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++.+.. ...+..+....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4689999999999999999999887632 2468999988877653 2666776532 12244444444444
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
...+.+.-+||+|-+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 444456679999998754
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.50 E-value=0.074 Score=53.31 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|.|++|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.49 E-value=0.078 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997653
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.44 E-value=0.069 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVAR 195 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~ 195 (1205)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 338
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.43 E-value=0.059 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 339
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.42 E-value=0.073 Score=54.93 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988753
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.36 E-value=0.079 Score=53.69 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 341
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.35 E-value=0.11 Score=51.28 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 161 FQKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 161 ~~~l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+..+..++.. +....+.|+|++|+||||+|..+++..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444445442 1234799999999999999999998764
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.35 E-value=0.074 Score=51.69 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
++++|+|..|+|||||++.+..-......-...+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 579999999999999999999887754322344444
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.34 E-value=0.085 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.31 E-value=0.2 Score=51.01 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV 205 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~ 205 (1205)
..+|+|.|+.|+||||+|+.+...... ..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999998763 34444
No 345
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.31 E-value=0.2 Score=52.44 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..++.|.|.+|+|||++|..++.....+ .-..++|++.... ..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~--~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER--ARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC--HHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCC--HHHHHHHH
Confidence 4689999999999999999877653322 2234667665543 44444433
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.30 E-value=0.069 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 347
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.29 E-value=0.084 Score=53.73 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998764
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.28 E-value=0.077 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999874
No 349
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.26 E-value=0.29 Score=64.47 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 247 (1205)
-++|-|+|+.|+||||||.++..... +.=...+|+++.+..+..- ++.+|++... ++..++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~--~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 47899999999999999999997765 3346789999988877653 7888887643 3355666666666
Q ss_pred HHHcCCeEEEEEccccc
Q 000975 248 ALKKKKRVLVILDDIWT 264 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~ 264 (1205)
.++.+..-+||+|-|-.
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 67777888999998754
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.25 E-value=0.083 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..|+|.|++|+||||+|+.+.....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988653
No 351
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.24 E-value=0.42 Score=66.73 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC---CCCCHH
Q 000975 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---RPDSLV 239 (1205)
Q Consensus 163 ~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~ 239 (1205)
.+++.+...+ +-|.++|++|+|||.+++.+..... . ...+.++.+...+...++..+-..+..... +.
T Consensus 1295 ~ll~~ll~~~-~pvLL~GptGtGKT~li~~~L~~l~---~-~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~---- 1365 (3245)
T 3vkg_A 1295 DVLHAWLSEH-RPLILCGPPGSGKTMTLTSTLRAFP---D-FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET---- 1365 (3245)
T ss_dssp HHHHHHHHTT-CCCEEESSTTSSHHHHHHHHGGGCT---T-EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE----
T ss_pred HHHHHHHHCC-CcEEEECCCCCCHHHHHHHHHHhCC---C-CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc----
Confidence 3444444433 3467999999999998877664331 1 235678888888888887777554421110 00
Q ss_pred HHHHHHHHHHHcCCeEEEEEcccccc
Q 000975 240 EKANQLRQALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 240 ~~~~~l~~~l~~~k~~LlVlDdv~~~ 265 (1205)
+..-...+|+.++++||+.-+
T Consensus 1366 -----~~~p~~~Gk~~VlFiDDiNmp 1386 (3245)
T 3vkg_A 1366 -----VLRPTQLGKWLVVFCDEINLP 1386 (3245)
T ss_dssp -----EEEESSTTCEEEEEETTTTCC
T ss_pred -----ccCCCcCCceEEEEecccCCC
Confidence 000000167888889998654
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.21 E-value=0.079 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.21 E-value=0.071 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999988754
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.20 E-value=0.095 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998764
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.19 E-value=0.072 Score=53.91 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVAR 195 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~ 195 (1205)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.12 E-value=0.2 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
.|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998753
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.12 E-value=0.13 Score=55.24 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...+|+|+|++|+||||+++.++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999988764
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.08 E-value=0.067 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987754
No 359
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.05 E-value=0.092 Score=54.94 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|+|+.|+||||+++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999997764
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.02 E-value=0.088 Score=55.56 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.00 E-value=0.094 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.98 E-value=0.16 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
....|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999876
No 363
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.97 E-value=0.94 Score=51.50 Aligned_cols=41 Identities=32% Similarity=0.309 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
..+++|+|..|+||||+++.++...+.. .+.+++.....+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 4699999999999999999999887642 2334444334443
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.95 E-value=0.099 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...|.|.|++|+||||+|+.++....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998764
No 365
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.94 E-value=0.51 Score=54.12 Aligned_cols=51 Identities=12% Similarity=-0.052 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
..++.|.|.+|+||||+|..++.....+ .-..++|++... +..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHH
Confidence 4689999999999999999999887542 123577877653 44566655543
No 366
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.94 E-value=0.1 Score=62.71 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=40.9
Q ss_pred ccCCccccCCChHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++.....++|.+..++.+...+... ..+.|+|++|+||||+|+.++....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4556678899998888877777644 4789999999999999999998754
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.90 E-value=0.094 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998864
No 368
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.85 E-value=0.35 Score=63.72 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (1205)
..+|.|.|.+|+||||||..++....... ..++|++........ .++.++.+.. ...+..+....+.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 46899999999999999999998876432 357888887766543 2666665422 12244444455544
Q ss_pred HHHcCCeEEEEEcccccc
Q 000975 248 ALKKKKRVLVILDDIWTQ 265 (1205)
Q Consensus 248 ~l~~~k~~LlVlDdv~~~ 265 (1205)
...+.+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 444456679999998764
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.80 E-value=0.094 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|.|++|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.65 E-value=0.11 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 371
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.64 E-value=0.079 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVV 193 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v 193 (1205)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 372
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.62 E-value=0.091 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVAR 195 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~ 195 (1205)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 373
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.60 E-value=0.098 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987653
No 374
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.60 E-value=0.11 Score=52.82 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV 205 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~ 205 (1205)
..+|+|.|+.|+||||+|+.+...... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999988754 34555
No 375
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.59 E-value=0.12 Score=49.57 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44689999999999999999999875
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.59 E-value=0.13 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|.|+|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988753
No 377
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.51 E-value=0.22 Score=48.48 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
.++++|+|+.|+||||++..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.48 E-value=0.11 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|+|.|++|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 379
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.42 E-value=0.12 Score=54.27 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|+|+.|+||||+++.++....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997754
No 380
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.41 E-value=0.11 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+++|+|+.|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999988753
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.35 E-value=0.11 Score=53.64 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...|.|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999865
No 382
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.34 E-value=0.13 Score=55.66 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (1205)
...+|+|+|+.|+|||||++.+..-......-..+.++.-..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 456899999999999999999998765321102355555443
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.33 E-value=0.11 Score=53.50 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 384
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.31 E-value=0.12 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+|+|.|+.|+||||+++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 385
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.31 E-value=0.12 Score=55.74 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=29.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..+|+|.|+.|+||||+|+.+.........-..+..++....
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 458999999999999999999887652111123455555543
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.30 E-value=0.098 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998865
No 387
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.29 E-value=0.24 Score=53.75 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=32.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
....++|+|+|-||+||||+|..++.....+++ .++-|++....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~--~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCC--eEEEEeCCCCC
Confidence 345689999999999999999999988764432 56677776543
No 388
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.16 E-value=0.11 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+++|+|+.|+||||+++.++...+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 389
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.13 E-value=0.15 Score=57.45 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=34.4
Q ss_pred ccCCChHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 153 HFPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356777777777655521 1234588999999999999999998864
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.11 E-value=0.13 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|.|.|++|+||+|.|+.++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998874
No 391
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.07 E-value=0.087 Score=51.81 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC---CCHHHHHHHHHHHhCCC---------CCCCC-----
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT---PDWKEICGRIADQLGLE---------IVRPD----- 236 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~---------~~~~~----- 236 (1205)
..|.|++..|.||||.|--.+-+.-- +=-.+.++..-+. ....++ ++.++.. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 45667777779999999998887652 2234555544332 222333 3333211 00100
Q ss_pred -CHHHHHHHHHHHHHcCCeEEEEEccccccc-----ccccccCCCCCCCccccCCCCCeEEEEecCchh
Q 000975 237 -SLVEKANQLRQALKKKKRVLVILDDIWTQI-----NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (1205)
Q Consensus 237 -~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~ilvTTr~~~ 299 (1205)
........+.+.+..++-=|||||++-... ..+++...+.. ......||+|+|...
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-------Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-------RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-------SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-------CcCCCEEEEECCCCc
Confidence 011123334444433445599999985532 11222111111 335668999999974
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.06 E-value=0.073 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
No 393
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.05 E-value=0.13 Score=52.41 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999998754
No 394
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.01 E-value=0.13 Score=54.12 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|.|+.|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.95 E-value=0.13 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 396
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.89 E-value=0.15 Score=51.71 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998765
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.82 E-value=0.14 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998765
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.81 E-value=0.14 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.78 E-value=0.17 Score=54.48 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...+++|+|+.|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988764
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.76 E-value=0.85 Score=52.44 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (1205)
..++.|.|.+|+||||+|..++....... -..++|++... +..++...+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 46899999999999999999998876422 12577877554 335555554
No 401
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.70 E-value=0.39 Score=53.17 Aligned_cols=38 Identities=26% Similarity=0.540 Sum_probs=29.5
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 161 FQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 161 ~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+.+.+. .....+|+|+|.+|+||||++..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344454444 34677999999999999999999988765
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.62 E-value=0.13 Score=53.53 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998764
No 403
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.59 E-value=0.15 Score=50.14 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999987643
No 404
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.53 E-value=0.22 Score=53.99 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
...+|+|+|.+|+||||++..++......+ ..+.+++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 457999999999999999999998876432 345556554
No 405
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.51 E-value=0.86 Score=53.28 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=39.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH-HhCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD-QLGLE 231 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~ 231 (1205)
..++.|.|.+|+||||+|..++.....+ +=..++|++... +..++...++. ..+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 4688999999999999999999887532 123578887655 35566665543 34443
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.50 E-value=0.16 Score=51.46 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988764
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.48 E-value=0.16 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVAR 195 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~ 195 (1205)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.35 E-value=0.15 Score=55.12 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.+|+|.|+.|+||||+|+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 409
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.23 E-value=0.42 Score=53.46 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCc----EEEEEEecCCC-CHHHHHHHHHHHhCC-------CCCCCCCHHH-
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFD----VVVDAEVTHTP-DWKEICGRIADQLGL-------EIVRPDSLVE- 240 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~- 240 (1205)
..++|.|..|+|||+|+.++++.... +-+ .++++-+.+.. .+.++++.+.+.=.+ ...+. ....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~-p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLAND-PAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTS-CHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCC-CHHHH
Confidence 34789999999999999999887653 223 67888888764 455666665443111 11111 2221
Q ss_pred -----HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 241 -----KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 241 -----~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
..-.+.+++. +++.+|+++||+-..
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 1234566666 379999999998653
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.21 E-value=0.19 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...|.|.|+.|+||||+|+.++....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.16 E-value=0.17 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988763
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.13 E-value=0.17 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..|.|.|++|+||||+|+.++....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 413
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.12 E-value=0.17 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.04 E-value=0.16 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVAR 195 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~ 195 (1205)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.01 E-value=0.51 Score=48.44 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
...|+|.|+.|+||||+++.+...... ..+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 468999999999999999999998875 345534433
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.99 E-value=0.17 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
++|.|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999875
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.96 E-value=0.34 Score=49.78 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
....|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 418
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.93 E-value=1.4 Score=50.11 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=31.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (1205)
..++.|.|.+|+||||+|..++.....+ -..++|++....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 4689999999999999999999887644 246788876543
No 419
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.84 E-value=0.18 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.+++|+|+.|+|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999988754
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.82 E-value=0.47 Score=51.09 Aligned_cols=51 Identities=22% Similarity=0.095 Sum_probs=34.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (1205)
...+++|+|++|+|||||++.++....... -..++|++... ...++...+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHH
Confidence 346899999999999999999998876431 11466766543 3344444333
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.80 E-value=0.19 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.76 E-value=0.22 Score=54.64 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
..+++|+|+.|+||||+++.++...+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 468999999999999999999998764
No 423
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.68 E-value=0.27 Score=49.51 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (1205)
.|.+.|.||+||||+|..++.....++ ++ +..+.+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCCCCC
Confidence 478999999999999999998876433 33 44555555433
No 424
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.64 E-value=0.13 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVA-RQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~-~~~ 197 (1205)
..+++|+|+.|+||||+++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.41 E-value=0.14 Score=54.70 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
+..+|+|.|+.|+||||+|+.+.......+ +. +..++...-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~-~~-~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREG-VK-AVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHT-CC-EEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcC-CC-eeEeecchhh
Confidence 456899999999999999999998654211 21 3445655444
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.41 E-value=0.16 Score=51.30 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999976
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.32 E-value=0.2 Score=54.26 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC-cEEEEEEecCC
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF-DVVVDAEVTHT 214 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~ 214 (1205)
...+|+|+|+.|+|||||++.+...... ... ..+.+++....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSR-WPEHRRVELITTDGF 121 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEecCCc
Confidence 4568999999999999999999987541 011 23455555543
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.28 E-value=0.22 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998874
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.26 E-value=0.19 Score=51.94 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
...+++|+|+.|+|||||++.+..-.+ ...+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEE
Confidence 346899999999999999999886543 33455555
No 430
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.26 E-value=0.26 Score=55.43 Aligned_cols=102 Identities=22% Similarity=0.180 Sum_probs=61.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC--CcEEEEEEecCCC-CHHHHHHHHHHHhCCCC------C
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL--FDVVVDAEVTHTP-DWKEICGRIADQLGLEI------V 233 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~ 233 (1205)
.++.+.. .+-..++|.|.+|+|||+|+.++++.....+. -+.++++-+.+.. ...++++.+.+.=.++. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3555541 12345788999999999999999988654221 1467888888764 45666666654311110 0
Q ss_pred CCCCHHH------HHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 234 RPDSLVE------KANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 234 ~~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
..+.... ..-.+.+++. +++.+|+++||+...
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 1111111 2334555665 489999999997654
No 431
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.18 E-value=0.2 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998754
No 432
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.18 E-value=0.61 Score=47.06 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (1205)
..|++.|+.|+||||+++.++...... .+..+++..-.....+-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988753 3423333322222223344444444
No 433
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.17 E-value=1.2 Score=50.99 Aligned_cols=97 Identities=12% Similarity=0.192 Sum_probs=57.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC-CHHHHHHHHHH----HhCCCC-----
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIAD----QLGLEI----- 232 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~----~l~~~~----- 232 (1205)
+++.|.. .+-..++|.|..|+|||+|+..+++.. +-+.++++-+.+.. ...++++.+-+ ..+...
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 4556552 234578999999999999999988763 34678899888763 34444443321 111100
Q ss_pred ----CCCCCHHHH------HHHHHHHHH-cCCeEEEEEccccc
Q 000975 233 ----VRPDSLVEK------ANQLRQALK-KKKRVLVILDDIWT 264 (1205)
Q Consensus 233 ----~~~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~ 264 (1205)
...+..... .-.+.++++ +++.+||++|++..
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 001122211 223444554 36999999999864
No 434
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.17 E-value=0.58 Score=52.32 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCCc-EEEEEEecCCC-CHHHHHHHHHHHhCC-------CCCCCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKE--------DLFD-VVVDAEVTHTP-DWKEICGRIADQLGL-------EIVRPD 236 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~ 236 (1205)
..++|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. ...++.+.+.+.=.. ...+.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999998876531 1222 66788888664 455666655432101 111111
Q ss_pred CH-----HHHHHHHHHHHH--cCCeEEEEEcccccc
Q 000975 237 SL-----VEKANQLRQALK--KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 237 ~~-----~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 265 (1205)
.. ....-.+.+++. +++.+|+++||+-..
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 11 112334566666 379999999998653
No 435
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.96 E-value=0.17 Score=51.82 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
..+++|+|+.|+|||||++.++.-.. ...+.+++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 63 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFL 63 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 45899999999999999999886542 33455554
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.90 E-value=0.39 Score=51.19 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC--------CCcEEEEEEecCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED--------LFDVVVDAEVTHT 214 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~ 214 (1205)
..++.|+|++|+||||||..++....... .-..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 46899999999999999999998654211 0234667766553
No 437
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.86 E-value=0.51 Score=51.44 Aligned_cols=48 Identities=27% Similarity=0.251 Sum_probs=35.8
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
....+++.+.|.||+||||+|..++...... -..++-|+.....++..
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhH
Confidence 4456788899999999999999999887633 34567777776554433
No 438
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.79 E-value=0.21 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998764
No 439
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.74 E-value=0.88 Score=51.90 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=58.9
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCC-HHHHHHHHHH----HhCC-------
Q 000975 164 MMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD-WKEICGRIAD----QLGL------- 230 (1205)
Q Consensus 164 l~~~l~-~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~----~l~~------- 230 (1205)
+++.+. -.+-..++|.|..|+|||+|++.+++. .+-+.++++-+.+... ..++++.+-+ ..+.
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 455554 123456899999999999999998765 3346889999987754 4555555422 1110
Q ss_pred ---CCCCCCCHHHH------HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 231 ---EIVRPDSLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 231 ---~~~~~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
..... ..... .-.+-++++ +++.+||++||+...
T Consensus 293 vV~~tsd~-p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 293 LIANTSNM-PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp EEECCTTS-CHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred EEEECCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 01111 21111 223344443 379999999998654
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.73 E-value=0.25 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45689999999999999999999876
No 441
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.71 E-value=0.55 Score=54.20 Aligned_cols=43 Identities=21% Similarity=0.493 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 000975 158 NPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKED 201 (1205)
Q Consensus 158 ~~~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~ 201 (1205)
.+.++.+...+...+ +.+.|.|.+|+||||++..+.......+
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 344555555555433 4899999999999999999998876433
No 442
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.62 E-value=0.37 Score=50.82 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999998775
No 443
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.60 E-value=0.24 Score=49.98 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 160 VFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 160 ~~~~l~~~l~~~~~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..+.+.+.....+.-.|+|+|.+|+|||||+..+...
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3444433333344456889999999999999888864
No 444
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.59 E-value=0.76 Score=46.40 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV 205 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~ 205 (1205)
...|+|.|+.|+||||+++.+.+.... ..+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence 357999999999999999999998864 33444
No 445
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.49 E-value=0.24 Score=49.35 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..|+|+|.+|+|||||++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 446
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.49 E-value=0.49 Score=50.11 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
++|+|.|-||+||||+|..++.....++ ..++-|+.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCCC
Confidence 5788899999999999999998876332 356677776443
No 447
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.47 E-value=0.49 Score=49.09 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=28.6
Q ss_pred HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 161 FQKMMESLRDS--NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 161 ~~~l~~~l~~~--~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+..|+... ....|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44566666643 24579999999999999999999864
No 448
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.46 E-value=0.2 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999988754
No 449
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.44 E-value=0.42 Score=50.10 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
....+++|+|+.|+||||+++.+.....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999999999999998765
No 450
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.43 E-value=0.22 Score=52.28 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
...+++|+|+.|+|||||++.++.-.+ ...+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 346899999999999999999887542 23455554
No 451
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.32 E-value=0.24 Score=51.66 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 452
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.32 E-value=0.62 Score=51.04 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=35.1
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 170 ~~~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
....+++.+.|.||+||||+|..++........=..++-|+.....+...
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHH
Confidence 44568999999999999999999998775201123466777765544333
No 453
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.24 E-value=0.24 Score=52.01 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
...+++|+|+.|+|||||++.++.-.+ ...+.+++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 83 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIII 83 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEE
Confidence 346899999999999999999886542 23455554
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.19 E-value=0.62 Score=47.21 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
.....|+|.|+.|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44578999999999999999999998765
No 455
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.15 E-value=0.28 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 456
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.11 E-value=0.19 Score=50.91 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999987654
No 457
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.11 E-value=0.22 Score=51.61 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
..+++|+|+.|+|||||.+.++.-.+ ...+.+++
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 65 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIF 65 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 45899999999999999999887542 23455554
No 458
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.04 E-value=2.2 Score=48.19 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=56.5
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHH-HHHHHHhhcCCCc-EEEEEEecCCC-CHHHHHHHHHHHhCCCC------C
Q 000975 164 MMESLR-DSNVNMIGLYGMGGVGKTTLVK-VVARQVVKEDLFD-VVVDAEVTHTP-DWKEICGRIADQLGLEI------V 233 (1205)
Q Consensus 164 l~~~l~-~~~~~vi~i~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~ 233 (1205)
.++.+. -.+-..++|.|..|+|||+||. .+.+. .+-+ .++++-+.+.. .+.++.+.+.+.=.++. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 345554 1223457899999999999974 55553 2334 46888888774 45666666554322211 1
Q ss_pred CCCCHHHH------HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 234 RPDSLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 234 ~~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
..+..... .-.+-++++ +++.+||++||+...
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 11122111 223344443 379999999998654
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.04 E-value=0.22 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|.|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.02 E-value=0.26 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.01 E-value=0.34 Score=50.13 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999988653
No 462
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.96 E-value=0.22 Score=52.16 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
..+++|+|+.|+|||||.+.++.-.+ ...+.+++
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 66 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYF 66 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE
Confidence 45899999999999999999887543 23455554
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.95 E-value=0.21 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
.+.|.|.|+.|+||||||..++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998753
No 464
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.93 E-value=0.23 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|+|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998764
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.88 E-value=0.5 Score=52.28 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999754
No 466
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.80 E-value=0.23 Score=51.60 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
..+++|+|+.|+|||||++.++.-.+ ...+.+++
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i 68 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLI 68 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 45899999999999999999887643 23455555
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.75 E-value=0.26 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988654
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.74 E-value=0.27 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988654
No 469
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.68 E-value=0.3 Score=48.93 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 470
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.64 E-value=0.3 Score=53.96 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5799999999999999999998764
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.61 E-value=0.27 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998754
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.54 E-value=0.56 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998865
No 473
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.52 E-value=0.33 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 474
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.50 E-value=0.55 Score=54.09 Aligned_cols=44 Identities=18% Similarity=-0.018 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 155 PSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 155 ~gr~~~~~~l~~~l~--~~~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..|.+..+.+.+... .....+|.+.|++|+||||+|+.++....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 456665555555542 23456899999999999999999999986
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.48 E-value=0.28 Score=51.82 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=26.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
...+++|+|+.|+|||||++.++.-.+ ...+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEE
Confidence 346899999999999999999987643 23444544
No 476
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.44 E-value=0.31 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998753
No 477
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.42 E-value=0.24 Score=56.15 Aligned_cols=38 Identities=32% Similarity=0.282 Sum_probs=28.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEec
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (1205)
..+|+|+|.+|+||||+|..++.....++ ..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecc
Confidence 46899999999999999999998876432 234555544
No 478
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.41 E-value=0.25 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..+++|+|+.|+|||||.+.++.-.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999999999999999887653
No 479
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.38 E-value=0.73 Score=46.51 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=32.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHHH
Q 000975 175 MIGLY-GMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (1205)
Q Consensus 175 vi~i~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (1205)
+|+|+ +-||+||||+|..++.....++ .+.-++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 56664 7899999999999998886432 6788888776554443
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.36 E-value=0.42 Score=47.09 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
.++.|+|+.|+||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999888777654
No 481
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.22 E-value=1.2 Score=50.48 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=58.2
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHH-HHHHHHhh----cCCCc-EEEEEEecCCC-CHHHHHHHHHHHhCCCC---
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVK-VVARQVVK----EDLFD-VVVDAEVTHTP-DWKEICGRIADQLGLEI--- 232 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~-~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--- 232 (1205)
.++.+.. .+-..++|+|..|+|||+||. .+.+.... ..+-+ .++++-+.+.. .+.++.+.+.+.=.++.
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 3555541 223457899999999999954 56655442 12234 57888888764 45566666654211110
Q ss_pred ---CCCCCHHHH------HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 233 ---VRPDSLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 233 ---~~~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
...+..... .-.+-+++. +++.+||++||+...
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 111121111 223444454 369999999998654
No 482
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.17 E-value=0.53 Score=50.45 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=31.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCC
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (1205)
.++|+|.|-||+||||+|..++.....++ ..+.-|++....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 36788899999999999999998876433 246667766543
No 483
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.16 E-value=0.3 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999988654
No 484
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.11 E-value=2.1 Score=48.54 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=57.3
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHH-HHHHHHhhcCCCc-EEEEEEecCCC-CHHHHHHHHHHHhCCCC------C
Q 000975 164 MMESLRD-SNVNMIGLYGMGGVGKTTLVK-VVARQVVKEDLFD-VVVDAEVTHTP-DWKEICGRIADQLGLEI------V 233 (1205)
Q Consensus 164 l~~~l~~-~~~~vi~i~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~ 233 (1205)
.++.+.. .+-..++|.|..|+|||+||. .+.+.. ..+ .++++-+.+.. .+.++.+.+.+.=.++. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 3555541 223457899999999999965 555543 245 45788888764 45566666654322211 1
Q ss_pred CCCCHHHH------HHHHHHHHH-cCCeEEEEEcccccc
Q 000975 234 RPDSLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (1205)
Q Consensus 234 ~~~~~~~~------~~~l~~~l~-~~k~~LlVlDdv~~~ 265 (1205)
..+..... .-.+-+++. +++.+|+++||+...
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11122111 223444454 369999999998654
No 485
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.03 E-value=0.27 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
..+++|+|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988754
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.02 E-value=0.27 Score=52.10 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEE
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (1205)
..+++|+|+.|+|||||++.++.-.+ ...+.+++
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 80 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNL 80 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEE
Confidence 45899999999999999999887643 23455554
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.93 E-value=0.27 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.90 E-value=0.26 Score=55.93 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 000975 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (1205)
Q Consensus 171 ~~~~vi~i~G~~GiGKTtLa~~v~~~~ 197 (1205)
....+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999988754
No 489
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.84 E-value=0.55 Score=47.24 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=32.6
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 174 NMIGLY-GMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 174 ~vi~i~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
++|+|+ +-||+||||+|..++.....++ ..++-++.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHH
Confidence 578887 6899999999999999876432 3567778776554443
No 490
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.71 E-value=0.33 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998754
No 491
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.66 E-value=0.88 Score=45.29 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQVVKED 201 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~~~~~~ 201 (1205)
.|+|-|.-|+||||.++.+++..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478899999999999999999887543
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.61 E-value=0.43 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
..++|.|++|+||||+|+.++....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998874
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.49 E-value=0.4 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 494
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.34 E-value=0.71 Score=48.23 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCcEEEEEEecCCCCHHH
Q 000975 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (1205)
Q Consensus 176 i~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (1205)
|+|.|-||+||||+|..++.....++ ..++-|+.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 67799999999999999999886433 4567777776555443
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.16 E-value=0.47 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999873
No 496
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.00 E-value=0.38 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 000975 175 MIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 175 vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.96 E-value=0.41 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 000975 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (1205)
Q Consensus 174 ~vi~i~G~~GiGKTtLa~~v~~~ 196 (1205)
-.|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 498
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.96 E-value=0.72 Score=53.78 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|.++|++|+||||+|+.++....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998765
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.91 E-value=0.75 Score=46.83 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 000975 173 VNMIGLYGMGGVGKTTLVKVVARQVVK 199 (1205)
Q Consensus 173 ~~vi~i~G~~GiGKTtLa~~v~~~~~~ 199 (1205)
...|+|.|+.|+||||+++.+++....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999998764
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.91 E-value=0.66 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 000975 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (1205)
Q Consensus 172 ~~~vi~i~G~~GiGKTtLa~~v~~~~~ 198 (1205)
...+|+|+|+.|+|||||++.++....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 346899999999999999999999875
Done!