Query 000976
Match_columns 1204
No_of_seqs 161 out of 187
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jma_B Herpesvirus entry media 93.8 0.041 1.4E-06 55.7 4.1 63 552-619 16-89 (167)
2 3fl7_A Ephrin receptor; ATP-bi 93.6 0.036 1.2E-06 65.6 3.8 36 553-590 265-302 (536)
3 2uwi_A CRME protein; receptor, 92.5 0.084 2.9E-06 52.5 4.0 62 551-618 16-88 (142)
4 1du3_A Death receptor 5; trail 91.9 0.11 3.7E-06 50.9 4.0 65 550-620 23-93 (130)
5 2hey_R Tumor necrosis factor r 91.8 0.088 3E-06 52.1 3.3 62 552-619 19-91 (146)
6 3me4_A Tumor necrosis factor r 91.0 0.13 4.4E-06 54.6 3.7 65 550-619 44-119 (216)
7 3alq_R Tumor necrosis factor r 90.8 0.15 5.1E-06 51.8 3.8 64 551-619 21-94 (173)
8 4fhq_A Tumor necrosis factor r 89.6 0.24 8.1E-06 49.0 4.0 63 552-619 18-91 (134)
9 3u3p_A Tumor necrosis factor r 89.5 0.2 6.8E-06 56.1 3.7 66 549-619 23-98 (313)
10 1sg1_X Tumor necrosis factor r 89.2 0.24 8.1E-06 49.5 3.7 62 552-619 16-87 (161)
11 3k51_B Decoy receptor 3; DCR3, 89.0 0.24 8.1E-06 51.0 3.7 64 550-619 20-94 (176)
12 2e4u_A Metabotropic glutamate 87.2 0.14 4.8E-06 59.4 0.7 40 550-593 484-532 (555)
13 3tje_F Tumor necrosis factor r 86.4 0.2 6.9E-06 50.8 1.2 64 552-620 44-120 (156)
14 1sg1_X Tumor necrosis factor r 85.7 0.24 8.3E-06 49.4 1.4 37 553-589 2-42 (161)
15 1ext_A Tumor necrosis factor r 84.3 0.27 9.3E-06 49.5 1.1 63 552-619 20-94 (162)
16 3tje_F Tumor necrosis factor r 84.2 1.2 4.2E-05 45.0 5.8 62 549-616 26-94 (156)
17 3urf_Z Tumor necrosis factor r 83.9 0.41 1.4E-05 49.0 2.2 36 552-588 100-144 (171)
18 3alq_R Tumor necrosis factor r 83.2 0.3 1E-05 49.6 0.8 39 552-590 5-50 (173)
19 3qd6_R CD40L receptor, tumor n 82.0 1.2 4E-05 45.6 4.6 63 552-619 18-91 (177)
20 2hey_R Tumor necrosis factor r 81.4 0.53 1.8E-05 46.5 1.8 31 555-588 85-122 (146)
21 3k51_B Decoy receptor 3; DCR3, 81.3 0.68 2.3E-05 47.6 2.6 46 552-600 102-156 (176)
22 3me4_A Tumor necrosis factor r 80.6 0.66 2.2E-05 49.2 2.3 35 553-588 130-173 (216)
23 1ext_A Tumor necrosis factor r 80.0 1.7 5.9E-05 43.7 5.0 38 553-590 3-49 (162)
24 2odl_A Adhesin; HMW1, secretio 80.0 2.8 9.5E-05 48.0 7.2 62 465-536 250-340 (373)
25 3urf_Z Tumor necrosis factor r 79.2 1.9 6.4E-05 44.2 5.0 63 551-619 19-92 (171)
26 3u3p_A Tumor necrosis factor r 76.1 1 3.5E-05 50.5 2.2 44 552-598 106-158 (313)
27 1jma_B Herpesvirus entry media 75.4 1.2 4.2E-05 45.0 2.4 38 553-590 2-44 (167)
28 2y38_A Laminin subunit alpha-5 73.9 2.2 7.6E-05 49.2 4.3 35 554-588 289-327 (403)
29 3qd6_R CD40L receptor, tumor n 71.4 2 6.7E-05 43.9 2.8 39 552-590 3-46 (177)
30 1klo_A Laminin; glycoprotein; 66.9 2.2 7.4E-05 42.8 1.9 41 548-588 16-58 (162)
31 1du3_A Death receptor 5; trail 65.7 1.7 5.7E-05 42.6 0.8 26 561-589 22-47 (130)
32 4fhq_A Tumor necrosis factor r 63.4 2.5 8.5E-05 41.8 1.6 38 553-590 4-46 (134)
33 1klo_A Laminin; glycoprotein; 58.4 2.9 9.8E-05 41.9 1.1 35 554-588 79-114 (162)
34 4aqt_A Laminin subunit gamma-1 58.0 5.9 0.0002 45.2 3.6 68 553-621 274-359 (375)
35 4aqt_A Laminin subunit gamma-1 55.7 4.1 0.00014 46.5 1.8 33 553-588 337-369 (375)
36 2hr7_A Insulin receptor; hormo 51.4 5.1 0.00017 47.1 1.8 32 553-588 272-306 (486)
37 2uwi_A CRME protein; receptor, 49.9 4.6 0.00016 40.0 0.9 42 554-595 82-136 (142)
38 1mox_A Epidermal growth factor 49.6 9.4 0.00032 45.0 3.6 35 553-588 269-307 (501)
39 4aqs_A Laminin subunit beta-1; 48.9 4.6 0.00016 47.2 0.9 33 554-588 463-495 (525)
40 2gy5_A Angiopoietin-1 receptor 48.3 13 0.00046 42.7 4.5 59 553-618 218-285 (423)
41 1igr_A Insulin-like growth fac 48.0 10 0.00035 44.6 3.5 36 682-721 367-402 (478)
42 2dtg_E Insulin receptor; IR ec 45.4 11 0.00036 46.9 3.3 25 699-723 390-414 (897)
43 2pne_A 6.5 kDa glycine-rich an 41.0 46 0.0016 29.7 5.7 15 366-380 25-39 (81)
44 3i2t_A Epidermal growth factor 31.0 20 0.00069 42.9 2.4 31 553-588 271-304 (551)
45 2a55_A C4B-binding protein; co 29.0 41 0.0014 32.2 3.8 68 546-618 25-98 (133)
46 3zyj_B Netrin-G1; cell adhesio 25.1 28 0.00096 40.6 2.2 35 554-588 316-359 (426)
47 3jx8_A Putative lipoprotein; s 22.6 4.9E+02 0.017 27.2 11.0 48 102-149 64-116 (250)
48 1n8y_C Protooncoprotein; tyros 21.4 40 0.0014 40.7 2.6 42 553-613 276-321 (608)
49 2gy5_A Angiopoietin-1 receptor 20.5 61 0.0021 37.3 3.7 20 554-573 266-286 (423)
No 1
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=93.78 E-value=0.041 Score=55.71 Aligned_cols=63 Identities=27% Similarity=0.535 Sum_probs=40.1
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCC-ceEEeeeCC-ccCCCCCccccCCccc
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERYH 619 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~r-a~yiyvr~G-~~~~~CpY~C~sdk~~ 619 (1204)
=+.||+|+| ...|++||.|+|+...+. ...|.+|+. .+.. ..++..... ...+.| .|.+++|.
T Consensus 16 C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 16 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcc--cccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence 366777764 467999999999986432 356888874 3322 233322222 235678 89998884
No 2
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=93.59 E-value=0.036 Score=65.59 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=29.8
Q ss_pred cCCCCCCC--cccceeCCCCccccccCCCCCCcccCCCCC
Q 000976 553 KACPKGLY--GIFCEECPVGTYKNVTGSDKSLCHQCPPQE 590 (1204)
Q Consensus 553 k~CP~Gly--G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~ 590 (1204)
=.|.+||. +..|+.||.|+||...| ...|.+||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EeccCccccCCceeeecCCCCCcccCC--CCccccCCCCC
Confidence 46999995 77799999999998764 47899999753
No 3
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=92.46 E-value=0.084 Score=52.46 Aligned_cols=62 Identities=26% Similarity=0.606 Sum_probs=40.8
Q ss_pred EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCC--ccCCCCCccccCCcc
Q 000976 551 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERY 618 (1204)
Q Consensus 551 ~gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G--~~~~~CpY~C~sdk~ 618 (1204)
-=+.||||++ ...|++||.|+|...... ...|.+|..-. . ...+.++.. ...+.| .|.++.|
T Consensus 16 cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~--~-~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 16 CCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC--G-TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC--C-TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCeeCccCCCCCCCccCcCCCCCCcccCCC-CCccCCCcCcc--c-CCeeEeecCCCCCCCEe--eCCCCcE
Confidence 3467888875 667999999999987543 35799998632 1 223332322 224678 5888877
No 4
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=91.92 E-value=0.11 Score=50.93 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=43.0
Q ss_pred EEccCCCCCCC----cccceeCCCC-ccccccCCCCCCcccCCCCCCCCCceEEeeeCC-ccCCCCCccccCCcccC
Q 000976 550 TTGKACPKGLY----GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYHM 620 (1204)
Q Consensus 550 I~gk~CP~Gly----G~fC~eCP~G-tYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G-~~~~~CpY~C~sdk~~~ 620 (1204)
..-..||||+| ...|++||.| +|...... ...|.+|.. .+.. .++...-. ...+.|. |.+++|..
T Consensus 23 ~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~g-~~~~~~Ct~t~dtvC~--C~~G~y~~ 93 (130)
T 1du3_A 23 PSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDSG-EVELSPCTTTRNTVCQ--CEEGTFRE 93 (130)
T ss_dssp CBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCTT-EEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred CccCCCCCCceecCCCCcCccCCCcCEEeCCCCC-CCcCcCCCC--CCcc-eeeeccCCCCCCCEec--CCCCeEEC
Confidence 45678999986 5679999999 99876543 356888885 4442 22222211 2356787 88888753
No 5
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=91.85 E-value=0.088 Score=52.05 Aligned_cols=62 Identities=24% Similarity=0.428 Sum_probs=39.9
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCc-eEEeeeCCc-cCCCCCccccCCccc
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRA-VYISVRGGI-AETPCPYRCISERYH 619 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra-~yiyvr~G~-~~~~CpY~C~sdk~~ 619 (1204)
=+.||+|+| ...|++||.|+|....+. ..|.+|+. .+... .++...... ..+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCeecccCCCCCCCCcccCCCCCEECCCCC--CcCcccCC--CCCCCCceEeccCccCCCccc--cCCCCeee
Confidence 478888875 467999999999987654 57999886 33321 233222222 24557 48777763
No 6
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=91.01 E-value=0.13 Score=54.56 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=41.0
Q ss_pred EEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCc--cCCCCCccccCCcc
Q 000976 550 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI--AETPCPYRCISERY 618 (1204)
Q Consensus 550 I~gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~--~~~~CpY~C~sdk~ 618 (1204)
.-=+.||||+| ...|++||.|+|+...+. ...|.+|+. ......+..++... ..+.| .|.+++|
T Consensus 44 ~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G~y 118 (216)
T 3me4_A 44 RCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAGYH 118 (216)
T ss_dssp EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTTEE
T ss_pred CCcCCCCCCceecccCCCCCCCccccCCCCCeecCCCC-CCcCCCCCC--CCCCcCeEEEecCCCCCCccc--cCCCCeE
Confidence 34678888876 567999999999986532 367988885 44433344443332 23456 3777766
Q ss_pred c
Q 000976 619 H 619 (1204)
Q Consensus 619 ~ 619 (1204)
.
T Consensus 119 ~ 119 (216)
T 3me4_A 119 W 119 (216)
T ss_dssp E
T ss_pred c
Confidence 3
No 7
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=90.75 E-value=0.15 Score=51.75 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=40.5
Q ss_pred EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCC-ccCCCCCccccCCccc
Q 000976 551 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYH 619 (1204)
Q Consensus 551 ~gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G-~~~~~CpY~C~sdk~~ 619 (1204)
-=+.||+|+| ...|++||.|+|+...+. ...|.+|... .+. ..|.....- ...+.| .|.+++|.
T Consensus 21 cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~~-C~~-g~~~~~~Ct~t~d~~C--~C~~G~y~ 94 (173)
T 3alq_R 21 CCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW-VPECLSCGSR-CSS-DQVETQACTREQNRIC--TCRPGWYC 94 (173)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCC-CCT-TEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCeecccCCCCCCCcCCcCCCCccccCCCC-CCccCCCCCc-CCC-CCEEecCCCCCCCCee--ECCCCeEe
Confidence 3478888865 456999999999987654 2579998831 222 233322211 225678 58888774
No 8
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=89.58 E-value=0.24 Score=49.02 Aligned_cols=63 Identities=27% Similarity=0.511 Sum_probs=40.4
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCcc--CCCCCccccCCccc
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIA--ETPCPYRCISERYH 619 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~~--~~~CpY~C~sdk~~ 619 (1204)
=+.||||++ ...|++||.|+|..... ....|.+|.. ...+...+.++..-. .+.|. |.+++|.
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~c 91 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHFC 91 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEecccCCCCCCCcccCCCCCCEecCCC-CCCcCcCCCC--CCccCCeEEeccCCCCCCcccc--CCCCCEe
Confidence 356777764 56799999999998653 2467999996 443223333333322 45575 8888774
No 9
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=89.50 E-value=0.2 Score=56.10 Aligned_cols=66 Identities=26% Similarity=0.646 Sum_probs=39.9
Q ss_pred eEEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCc-cCCCCCccccCCcc
Q 000976 549 TTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI-AETPCPYRCISERY 618 (1204)
Q Consensus 549 TI~gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~-~~~~CpY~C~sdk~ 618 (1204)
.+-=..||+|+| ...|++||.|+|+.... ....|.+|... ... ..+.....-. ..+.| .|.+++|
T Consensus 23 ~~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~~~-C~~-g~~~~~~CT~TsDtvC--~C~~G~y 97 (313)
T 3u3p_A 23 VLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCSQP-CPW-PMIEKLPCAALTDREC--TCPPGMF 97 (313)
T ss_dssp EEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECCCC-CCT-TCEEEECSBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCceecCcCCCCCCCccccCCCCceeccCC-CCCcCcccccc-cCC-CCEEecCCcCCCCccc--cCCCCce
Confidence 345567888875 56799999999998642 23679998841 221 2222221111 13457 7887777
Q ss_pred c
Q 000976 619 H 619 (1204)
Q Consensus 619 ~ 619 (1204)
.
T Consensus 98 ~ 98 (313)
T 3u3p_A 98 Q 98 (313)
T ss_dssp E
T ss_pred e
Confidence 3
No 10
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=89.17 E-value=0.24 Score=49.53 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=38.7
Q ss_pred ccCCCCCCC--------cccceeCCCC-ccccccCCCCCCcccCCCCCCCCCceEEeeeCC-ccCCCCCccccCCccc
Q 000976 552 GKACPKGLY--------GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYH 619 (1204)
Q Consensus 552 gk~CP~Gly--------G~fC~eCP~G-tYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G-~~~~~CpY~C~sdk~~ 619 (1204)
=+.||+|+| ...|++||.| +|+...+. ...|.+|+. -+. ..++....- ...+.| .|.++.|.
T Consensus 16 C~~CppG~~~~~~C~~~~t~C~~C~~g~ty~~~~~~-~~~C~~C~~--C~~-~~~~~~~Ct~t~d~~C--~C~~G~y~ 87 (161)
T 1sg1_X 16 CKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSA-TEPCKPCTE--CLG-LQSMSAPCVEADDAVC--RCAYGYYQ 87 (161)
T ss_dssp CCCBCTTEEEEECSSSSSCEEEECCTTTEECCSCBS-SCCCEECCC--CCT-TEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCcCCeECCcCCCCCCcCcCCcCCCccccCCCC-CCcCcCCCC--CCC-cceeecCCCcccCcee--ccCCCeEe
Confidence 466777765 4569999998 99886542 357888885 332 233322211 124668 48888775
No 11
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=89.04 E-value=0.24 Score=50.97 Aligned_cols=64 Identities=20% Similarity=0.438 Sum_probs=39.4
Q ss_pred EEccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCC--ccCCCCCccccCCcc
Q 000976 550 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERY 618 (1204)
Q Consensus 550 I~gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G--~~~~~CpY~C~sdk~ 618 (1204)
+-=+.||+|+| ...|++||.|+|+.... ....|.+|... ... ..+.++.. .+.+.| .|.+++|
T Consensus 20 ~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~~-C~~--~~~~~~~Ct~tsdtvC--~C~~G~~ 93 (176)
T 3k51_B 20 LVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNVL-CGE--REEEARACHATHNRAC--RCRTGFF 93 (176)
T ss_dssp EEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCC-CCS--SEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCceeCccCCCCCCCccccCCCCCeecCCC-CCCcCccccCc-CCC--CCEEeccCcCCCCcee--eccCCee
Confidence 44466777765 56799999999987542 23579999841 222 22222222 224567 7888777
Q ss_pred c
Q 000976 619 H 619 (1204)
Q Consensus 619 ~ 619 (1204)
.
T Consensus 94 ~ 94 (176)
T 3k51_B 94 A 94 (176)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=87.23 E-value=0.14 Score=59.35 Aligned_cols=40 Identities=23% Similarity=0.571 Sum_probs=29.8
Q ss_pred EEccCCCCCCCc---------ccceeCCCCccccccCCCCCCcccCCCCCCCC
Q 000976 550 TTGKACPKGLYG---------IFCEECPVGTYKNVTGSDKSLCHQCPPQEFPH 593 (1204)
Q Consensus 550 I~gk~CP~GlyG---------~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ 593 (1204)
+=..+||||+.. +-|.+||.|.+. | |...|.+||.+.-|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred eeCCCCCCCeeeeecCCCeeEEECccCCCceec--C--CCccceeCCcccCcC
Confidence 344889999852 239999999987 4 567899999765443
No 13
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=86.37 E-value=0.2 Score=50.77 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=36.6
Q ss_pred ccCCCCCCC----------cccceeCCCC-ccccccCCCCCCcccCCCCCCCCCceEEeeeCCc--cCCCCCccccCCcc
Q 000976 552 GKACPKGLY----------GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGI--AETPCPYRCISERY 618 (1204)
Q Consensus 552 gk~CP~Gly----------G~fC~eCP~G-tYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~--~~~~CpY~C~sdk~ 618 (1204)
=+.||||+| ...|++||.| +|..... ....|.+|.. .........++..- +.+.| .|.++.|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCC-CCCcCcCCCC--CCCCcceEEeccccCCCCCee--eCCCCCE
Confidence 356666654 3568888888 7877543 2356777775 44332233333222 24567 7888877
Q ss_pred cC
Q 000976 619 HM 620 (1204)
Q Consensus 619 ~~ 620 (1204)
..
T Consensus 119 c~ 120 (156)
T 3tje_F 119 CN 120 (156)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 14
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=85.71 E-value=0.24 Score=49.44 Aligned_cols=37 Identities=30% Similarity=0.856 Sum_probs=28.4
Q ss_pred cCCCCCCC---cccceeCCCCcccccc-CCCCCCcccCCCC
Q 000976 553 KACPKGLY---GIFCEECPVGTYKNVT-GSDKSLCHQCPPQ 589 (1204)
Q Consensus 553 k~CP~Gly---G~fC~eCP~GtYK~~t-Gs~~~~C~pCp~~ 589 (1204)
..||.|+| +.-|..||.|+|.... +.....|.+|+..
T Consensus 2 ~~C~~g~y~~~~~~C~~CppG~~~~~~C~~~~t~C~~C~~g 42 (161)
T 1sg1_X 2 ETCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDN 42 (161)
T ss_dssp CCCTTCCBCTTSCBCCCBCTTEEEEECSSSSSCEEEECCTT
T ss_pred CCCCcccCccCCcCCCCCCcCCeECCcCCCCCCcCcCCcCC
Confidence 57999987 5669999999997653 1234679999974
No 15
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=84.34 E-value=0.27 Score=49.50 Aligned_cols=63 Identities=22% Similarity=0.538 Sum_probs=39.2
Q ss_pred ccCCCCCCC----------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCC--ccCCCCCccccCCccc
Q 000976 552 GKACPKGLY----------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERYH 619 (1204)
Q Consensus 552 gk~CP~Gly----------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G--~~~~~CpY~C~sdk~~ 619 (1204)
=+.||+|+| ...|++||.|+|....+. ...|.+|.. -......+.++.. ...+.| .|.++.|.
T Consensus 20 C~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dt~C--~C~~G~y~ 94 (162)
T 1ext_A 20 CTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSK--CRKEMGQVEISSCTVDRDTVC--GCRKNQYR 94 (162)
T ss_dssp EECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTCEEEECCBTTBCCEE--ECCTTEEE
T ss_pred CCCCCCCcccccccCCCCCCcccccCCCCccccccCC-CCcccccCC--CCCCCCEEEEecccCCCCCCc--cCCCCcee
Confidence 577888875 256999999999987653 457888874 3321122222222 224667 78887774
No 16
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=84.19 E-value=1.2 Score=45.04 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=29.9
Q ss_pred eEEccCCCCCCC---cccceeCCCCccccccCCC---CCCcccCCCCCCCCCceEEeeeCC-ccCCCCCccccCC
Q 000976 549 TTTGKACPKGLY---GIFCEECPVGTYKNVTGSD---KSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISE 616 (1204)
Q Consensus 549 TI~gk~CP~Gly---G~fC~eCP~GtYK~~tGs~---~~~C~pCp~~~~P~ra~yiyvr~G-~~~~~CpY~C~sd 616 (1204)
|--...||+|.| |.=|..||+|+|....... ...|.||++.+ .|.....+ -....|.+ |+++
T Consensus 26 ~~~~~~C~~~~Y~~~~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g~-----ty~~~~n~~~~C~~C~~-C~~~ 94 (156)
T 3tje_F 26 TTVETQNLEGLHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGK-----EYTDKAHFSSKCRRCRL-CDEG 94 (156)
T ss_dssp -------------CCTTCSSCBCTTEEESSCCCSSSCCCCEEECCTTT-----EECSSCBSCSCCEECCC-CCGG
T ss_pred eecccCCCCCcEECcCeECCCCCCCCeECCcCCCCCCCCcceeCCCCC-----eeeccCCCCCcCcCCCC-CCCC
Confidence 344578999987 5558999999997643321 36799999851 22222111 12456675 8775
No 17
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=83.89 E-value=0.41 Score=49.04 Aligned_cols=36 Identities=33% Similarity=0.786 Sum_probs=27.5
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCC
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
-+.||+|++ ...|++||.|||.+.. |+.+.|+||..
T Consensus 100 ct~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-ss~~~C~p~T~ 144 (171)
T 3urf_Z 100 HRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNET-SSKAPCRKHTN 144 (171)
T ss_dssp CCCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BSSCCCEECCC
T ss_pred cCcCCCCceEeecCccCCCcccccCCCCcccCCC-CCCCccccCCc
Confidence 367888874 5669999999999863 34578999875
No 18
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=83.25 E-value=0.3 Score=49.56 Aligned_cols=39 Identities=23% Similarity=0.656 Sum_probs=28.0
Q ss_pred ccCCCCCCC-----cccceeCCCCcccccc--CCCCCCcccCCCCC
Q 000976 552 GKACPKGLY-----GIFCEECPVGTYKNVT--GSDKSLCHQCPPQE 590 (1204)
Q Consensus 552 gk~CP~Gly-----G~fC~eCP~GtYK~~t--Gs~~~~C~pCp~~~ 590 (1204)
+..|++|.| +.-|..||.|+|.... ......|.+|+..+
T Consensus 5 ~~~C~~g~Y~~~~~~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gt 50 (173)
T 3alq_R 5 GSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDST 50 (173)
T ss_dssp --CCCTTEEEETTTTEEEECBCTTEEEEECCCSSCCCEEEECCTTE
T ss_pred cCcCCCCccccCCCCcCCCCCCCCCeecccCCCCCCCcCCcCCCCc
Confidence 468999976 4569999999998753 11246799999754
No 19
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=81.99 E-value=1.2 Score=45.56 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.8
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCC--ccCCCCCccccCCccc
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERYH 619 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G--~~~~~CpY~C~sdk~~ 619 (1204)
=+.||+|+| ...|++||.|+|+...+. ...|.+|.. .+.......++.. ...+.|. |.++.|.
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~d~~C~--C~~G~~~ 91 (177)
T 3qd6_R 18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNR-ETHCHQHKY--CDPNLGLRVQQKGTSETDTICT--CEEGWHC 91 (177)
T ss_dssp ECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSBC-CSSCEECCC--CCGGGTEEEEECCCTTSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEeccCCCCCCCCccccCCCCceecCCCC-CCcCCCCCc--CCCcCCeEEecCCcCCCCceee--cCCCcEE
Confidence 467777764 457999999999875432 356888875 3332222222222 1245576 7777663
No 20
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=81.45 E-value=0.53 Score=46.48 Aligned_cols=31 Identities=26% Similarity=0.694 Sum_probs=24.6
Q ss_pred CCCCCC-------cccceeCCCCccccccCCCCCCcccCCC
Q 000976 555 CPKGLY-------GIFCEECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 555 CP~Gly-------G~fC~eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
|++|+| +.-|++||.|||.+.. ...|+||++
T Consensus 85 C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~---~~~C~~~t~ 122 (146)
T 2hey_R 85 CRAGTQPLDSYKPGVDCAPCPPGHFSPGD---NQACKPWTN 122 (146)
T ss_dssp ECTTEEESCSSSTTSSEEECCTTEECCST---TCCCEECCC
T ss_pred CCCCeeeCCCcccCcccccCCCCcccCCC---CCCCcCCCC
Confidence 777765 3469999999999852 468999985
No 21
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=81.32 E-value=0.68 Score=47.58 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=32.8
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEee
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISV 600 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyv 600 (1204)
-+.||+|++ ...|++||.|||.+.. |+...|+||.+ ......++.+
T Consensus 102 ~s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~t~--C~~~G~~~~~ 156 (176)
T 3k51_B 102 HASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS-SSSEQCQPHRN--CTALGLALNV 156 (176)
T ss_dssp CCCCCTTEEEEECCCSSSCCEEEECCTTEECCSC-SSSCCCEECCC--STTTTCCEEE
T ss_pred cccCCCCcEEeecCcccCCCccccCCCCcccCCC-CCCCcccCCCc--cCCCCeeEec
Confidence 378999984 4679999999999864 33578999986 4433344433
No 22
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=80.58 E-value=0.66 Score=49.22 Aligned_cols=35 Identities=20% Similarity=0.571 Sum_probs=26.9
Q ss_pred cCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCC
Q 000976 553 KACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 553 k~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
+.||+|.+ ...|++||.|||++... +...|+||..
T Consensus 130 s~C~pG~~v~~~ct~~~Dt~C~~C~~GtFs~~~s-~~~~C~p~T~ 173 (216)
T 3me4_A 130 TECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFS-STDKCKPWTN 173 (216)
T ss_dssp CCBCTTEEECSSEETTSCCCEEECCTTEECCSCB-SSCCCEECCC
T ss_pred ccCCCCccccccCccCCCCccccCCCceecCCCC-CCCccccCCc
Confidence 57888873 56799999999988642 3567999875
No 23
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=79.97 E-value=1.7 Score=43.69 Aligned_cols=38 Identities=32% Similarity=0.797 Sum_probs=28.5
Q ss_pred cCCCCCCC------cccceeCCCCccccccC---CCCCCcccCCCCC
Q 000976 553 KACPKGLY------GIFCEECPVGTYKNVTG---SDKSLCHQCPPQE 590 (1204)
Q Consensus 553 k~CP~Gly------G~fC~eCP~GtYK~~tG---s~~~~C~pCp~~~ 590 (1204)
..||.|+| +.-|..||.|+|..... .....|.|||.+.
T Consensus 3 ~~C~~g~Y~~~~~~~~CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gt 49 (162)
T 1ext_A 3 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGS 49 (162)
T ss_dssp CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTTE
T ss_pred ccCCCCceeccCCCCCCCCCCCCCcccccccCCCCCCcccccCCCCc
Confidence 57999965 23499999999988653 1346799999753
No 24
>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}
Probab=79.96 E-value=2.8 Score=48.04 Aligned_cols=62 Identities=29% Similarity=0.536 Sum_probs=43.4
Q ss_pred CCccccceEEEEeceeeeCCceeEEEecCCCCC------CCC-----------------------cccccceEEEEeecC
Q 000976 465 AGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSH------MGG-----------------------GGGGGGRIHFHWSDI 515 (1204)
Q Consensus 465 GGGGSGGSIlL~a~~l~l~g~G~LsA~GG~Gg~------~gG-----------------------GGGGGGRI~~~~~~i 515 (1204)
...|.||.|.+..+.+.+.....|.|.|-.|+. ..| +-|-||||.+ |++.
T Consensus 250 ~~~g~GG~V~i~g~~v~l~~gA~I~asG~~GG~v~iGGd~qG~~~~~~~~A~~t~v~~~s~I~a~a~g~GG~viv-wsd~ 328 (373)
T 2odl_A 250 NQQAKGGKLMITGDKVTLKTGAVIDLSGKEGGETYLGGDERGEGKNGIQLAKKTSLEKGSTINVSGKEKGGRAIV-WGDI 328 (373)
T ss_dssp EEEEECCEEEEEEEEEEECTTCEEECCEEECCEEEESSCGGGCCGGGCCCCSEEEECTTCEEECCEEEECCEEEE-ECSE
T ss_pred CCCCCCCEEEEEcceEEecCCCEEEeeccCCCcEEEeCCccccCCccccccceEEEcCCCEEEeeccCCCcEEEE-eccc
Confidence 446899999999998888766788886644431 111 1146888866 7643
Q ss_pred CCCCcccccceeeeeEEecCC
Q 000976 516 PTGDVYQPIASVRGSIRIGGG 536 (1204)
Q Consensus 516 ~tGd~y~pia~~~G~I~~~GG 536 (1204)
..|.|.|.++||
T Consensus 329 ---------t~f~G~I~ArGg 340 (373)
T 2odl_A 329 ---------ALIDGNINAQGS 340 (373)
T ss_dssp ---------EEECSEEECCCS
T ss_pred ---------eeEeEEEEEecC
Confidence 258899999995
No 25
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=79.17 E-value=1.9 Score=44.24 Aligned_cols=63 Identities=25% Similarity=0.594 Sum_probs=37.8
Q ss_pred EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCC--ccCCCCCccccCCccc
Q 000976 551 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERYH 619 (1204)
Q Consensus 551 ~gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G--~~~~~CpY~C~sdk~~ 619 (1204)
-=+.||+|+| ...|++||.|+|+..... ...|.+|... ... ..++ ++.. ...+.|. |.+++|.
T Consensus 19 cC~~CppG~~~~~~Ct~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~~-C~~-~~~~-~~~CT~tsdtvC~--C~~G~~~ 92 (171)
T 3urf_Z 19 LCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHT-SDECLYCSPV-CKE-LQYV-KQECNRTHNRVCE--CKEGRYL 92 (171)
T ss_dssp EEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCBC-CSSCEECCCC-CCT-TEEE-EECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCCceecccCCCCCCCccccCCCCcEecCCCC-CCccccCcCc-cCC-CCEE-eccCcCCCCcccc--CCCCcEE
Confidence 3355666654 567999999999986432 4679999831 222 2232 2222 1245574 8887773
No 26
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=76.15 E-value=1 Score=50.52 Aligned_cols=44 Identities=20% Similarity=0.535 Sum_probs=30.9
Q ss_pred ccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEE
Q 000976 552 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYI 598 (1204)
Q Consensus 552 gk~CP~Gly---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yi 598 (1204)
-+.||+|++ ...|++||.|||.+... ....|++|.. ......++
T Consensus 106 Ct~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~S-s~~~C~pcT~--C~~~G~~v 158 (313)
T 3u3p_A 106 HTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPS-SVMKCKAYTD--CLSQNLVV 158 (313)
T ss_dssp CCCBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-SSCCCEECCC--SGGGTCEE
T ss_pred cccCCCCCeeeecCCCCCCCccccCCCCeecCCCC-CCcccccCCc--cCCCCceE
Confidence 468888873 56899999999998642 3567999975 44333344
No 27
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=75.41 E-value=1.2 Score=44.99 Aligned_cols=38 Identities=24% Similarity=0.651 Sum_probs=26.7
Q ss_pred cCCCCCCC---cccceeCCCCcccccc--CCCCCCcccCCCCC
Q 000976 553 KACPKGLY---GIFCEECPVGTYKNVT--GSDKSLCHQCPPQE 590 (1204)
Q Consensus 553 k~CP~Gly---G~fC~eCP~GtYK~~t--Gs~~~~C~pCp~~~ 590 (1204)
..|+.|.| +.-|..||.|+|.... ......|.+||..+
T Consensus 2 ~~C~~g~Y~~~~~~C~~CppG~~~~~~C~~~~~t~C~~Cp~Gt 44 (167)
T 1jma_B 2 PSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGT 44 (167)
T ss_dssp --CCTTBCCBTTBCCBCBCTTEEEEECCCSSSCCEEEECCTTE
T ss_pred CCCCCCCEECCCcCCCCCCCCCEeccCCCCCCCCcCCcCCCCc
Confidence 46999976 5679999999997531 11235899999753
No 28
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=73.90 E-value=2.2 Score=49.22 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=27.6
Q ss_pred CCCCCCCcccceeCCCCcccccc----CCCCCCcccCCC
Q 000976 554 ACPKGLYGIFCEECPVGTYKNVT----GSDKSLCHQCPP 588 (1204)
Q Consensus 554 ~CP~GlyG~fC~eCP~GtYK~~t----Gs~~~~C~pCp~ 588 (1204)
.|+.++.|..|+.|..|||.... ......|++|+=
T Consensus 289 ~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~C 327 (403)
T 2y38_A 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNC 327 (403)
T ss_dssp CCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCC
T ss_pred ECcCcCcCCCCCCCCccccCCcccccccCCCcccccccc
Confidence 79999999999999999997631 122357999983
No 29
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=71.42 E-value=2 Score=43.92 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=26.7
Q ss_pred ccCCCCCCC---cccceeCCCCccccccCC--CCCCcccCCCCC
Q 000976 552 GKACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQE 590 (1204)
Q Consensus 552 gk~CP~Gly---G~fC~eCP~GtYK~~tGs--~~~~C~pCp~~~ 590 (1204)
+..|+.+.| |.=|.+||.|+|...... ....|.||+.++
T Consensus 3 ~~~C~~~~Y~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gt 46 (177)
T 3qd6_R 3 PTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESE 46 (177)
T ss_dssp ---CCSSCEECSSSEECCBCTTBCCCBCCCSSCCCBCCBCCSSE
T ss_pred cccCCCCcEECCCeECCCCCCCCEeccCCCCCCCCccccCCCCc
Confidence 357999976 445999999999764321 345899999753
No 30
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=66.85 E-value=2.2 Score=42.83 Aligned_cols=41 Identities=32% Similarity=0.635 Sum_probs=30.0
Q ss_pred ceEEccCCCCCCCcccceeCCCCccccccCC--CCCCcccCCC
Q 000976 548 GTTTGKACPKGLYGIFCEECPVGTYKNVTGS--DKSLCHQCPP 588 (1204)
Q Consensus 548 GTI~gk~CP~GlyG~fC~eCP~GtYK~~tGs--~~~~C~pCp~ 588 (1204)
|+..=..||+|+.|..|+.|+.|||.+.... ....|++|+=
T Consensus 16 g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C 58 (162)
T 1klo_A 16 KEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC 58 (162)
T ss_dssp CCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCS
T ss_pred CCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcC
Confidence 3344458999999999999999999864321 1246888763
No 31
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=65.73 E-value=1.7 Score=42.61 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred cccceeCCCCccccccCCCCCCcccCCCC
Q 000976 561 GIFCEECPVGTYKNVTGSDKSLCHQCPPQ 589 (1204)
Q Consensus 561 G~fC~eCP~GtYK~~tGs~~~~C~pCp~~ 589 (1204)
+.-|..||.|+|.... ...|.||+.+
T Consensus 22 ~~~C~~CppG~~~~~~---~t~C~pC~~g 47 (130)
T 1du3_A 22 SPSEGLCPPGHHISED---GRDCISCKYG 47 (130)
T ss_dssp CCBTTBBCTTEEECSS---SSCEEECCTT
T ss_pred CCccCCCCCCceecCC---CCcCccCCCc
Confidence 5669999999998753 4689999975
No 32
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=63.44 E-value=2.5 Score=41.77 Aligned_cols=38 Identities=24% Similarity=0.663 Sum_probs=27.5
Q ss_pred cCCCCCCC---cccceeCCCCccccccCC--CCCCcccCCCCC
Q 000976 553 KACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQE 590 (1204)
Q Consensus 553 k~CP~Gly---G~fC~eCP~GtYK~~tGs--~~~~C~pCp~~~ 590 (1204)
..|+++.| |.=|..||+|+|...... ....|.|||+.+
T Consensus 4 ~~C~~~eY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gt 46 (134)
T 4fhq_A 4 PSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGT 46 (134)
T ss_dssp CCCCTTEEEETTEEEECBCTTEEEEECCC--CCCEEEECCTTE
T ss_pred CCCCcccEECcCcCCCCCCCCCEecccCCCCCCCcccCCCCCC
Confidence 57999976 444999999999653322 235799999754
No 33
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=58.43 E-value=2.9 Score=41.94 Aligned_cols=35 Identities=23% Similarity=0.648 Sum_probs=26.5
Q ss_pred CCCCCCCcccceeCCCCccccccC-CCCCCcccCCC
Q 000976 554 ACPKGLYGIFCEECPVGTYKNVTG-SDKSLCHQCPP 588 (1204)
Q Consensus 554 ~CP~GlyG~fC~eCP~GtYK~~tG-s~~~~C~pCp~ 588 (1204)
.|++++.|.+|+.|+.|||-+..- .+...|++|+=
T Consensus 79 ~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C 114 (162)
T 1klo_A 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114 (162)
T ss_dssp CBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCC
T ss_pred CCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccC
Confidence 599999999999999999976421 11245888763
No 34
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=57.98 E-value=5.9 Score=45.22 Aligned_cols=68 Identities=21% Similarity=0.430 Sum_probs=42.3
Q ss_pred cCCCCCCCcccceeCCCCccccc----cCCCCCCcccCCCCCCCCCceEE--------------eeeCCccCCCCCcccc
Q 000976 553 KACPKGLYGIFCEECPVGTYKNV----TGSDKSLCHQCPPQEFPHRAVYI--------------SVRGGIAETPCPYRCI 614 (1204)
Q Consensus 553 k~CP~GlyG~fC~eCP~GtYK~~----tGs~~~~C~pCp~~~~P~ra~yi--------------yvr~G~~~~~CpY~C~ 614 (1204)
-.|++|+.|..|++|-.|+|... +..+...|++|.=+..-.+-.+. .-+.|.+.+.|. +|.
T Consensus 274 C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce-~C~ 352 (375)
T 4aqt_A 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCE-RCR 352 (375)
T ss_dssp ECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSC-EEC
T ss_pred eeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCC-CCC
Confidence 48999999999999999998653 22234569988731111111111 123344556775 688
Q ss_pred CCcccCC
Q 000976 615 SERYHMP 621 (1204)
Q Consensus 615 sdk~~~p 621 (1204)
+++|+.+
T Consensus 353 ~Gyyg~~ 359 (375)
T 4aqt_A 353 ENFFRLG 359 (375)
T ss_dssp SSEECCT
T ss_pred cCcccCc
Confidence 8887654
No 35
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=55.67 E-value=4.1 Score=46.54 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=26.5
Q ss_pred cCCCCCCCcccceeCCCCccccccCCCCCCcccCCC
Q 000976 553 KACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 553 k~CP~GlyG~fC~eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
..|.+|+.|..|++|..|||.... ...|+||.-
T Consensus 337 ~~C~~n~~G~~Ce~C~~Gyyg~~~---~~~C~pCaA 369 (375)
T 4aqt_A 337 TNCRDNTDGAKCERCRENFFRLGN---TEACSPAAA 369 (375)
T ss_dssp CSCTTTEESTTSCEECSSEECCTT---CSSCEEC--
T ss_pred CCCCCCCcCCCCCCCCcCcccCcC---CCCCcCCcC
Confidence 469999999999999999998642 346999984
No 36
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=51.42 E-value=5.1 Score=47.06 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=22.5
Q ss_pred cCCCCCC--Ccccce-eCCCCccccccCCCCCCcccCCC
Q 000976 553 KACPKGL--YGIFCE-ECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 553 k~CP~Gl--yG~fC~-eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
..|. .| ++..|+ +||.|+|.+. +...|.||..
T Consensus 272 ~sC~-~~~~~~~~CV~~CP~g~~~~~---~~~~C~~C~~ 306 (486)
T 2hr7_A 272 QGCH-QYVIHNNKCIPECPSGYTMNS---SNLLCTPCLG 306 (486)
T ss_dssp SSCC-CCEEETTEEESSCCTTEEECT---TSCBEEECSS
T ss_pred cccc-cEeeECCEecccCCCCcccCC---CCCccccCCc
Confidence 4565 45 366776 7999999875 2357999984
No 37
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=49.86 E-value=4.6 Score=40.01 Aligned_cols=42 Identities=19% Similarity=0.563 Sum_probs=21.4
Q ss_pred CCCCCCC------c---ccc---eeCCCCcccccc-CCCCCCcccCCCCCCCCCc
Q 000976 554 ACPKGLY------G---IFC---EECPVGTYKNVT-GSDKSLCHQCPPQEFPHRA 595 (1204)
Q Consensus 554 ~CP~Gly------G---~fC---~eCP~GtYK~~t-Gs~~~~C~pCp~~~~P~ra 595 (1204)
.|++|+| . ..| ..||.|++.... -..-..|.+||...+....
T Consensus 82 ~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~v~~~t~~~dt~C~~C~~GtfS~~~ 136 (142)
T 2uwi_A 82 HCDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGTYSKTG 136 (142)
T ss_dssp EECTTEEEEEECTTSCEEEEEECCCCCTTEEEEEECTTSCEEEEECC--------
T ss_pred eCCCCcEecccCCCCCCCCCcCCCcCCcCEeeCCCCCCCCCcccCCCCCcccCCc
Confidence 3888887 1 356 578999885321 1122459999987665543
No 38
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=49.58 E-value=9.4 Score=45.01 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=24.8
Q ss_pred cCCCCCC---Ccccce-eCCCCccccccCCCCCCcccCCC
Q 000976 553 KACPKGL---YGIFCE-ECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 553 k~CP~Gl---yG~fC~-eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
+.||.+| .+..|+ +||.|+|.+.. .....|++|..
T Consensus 269 ~~Cp~~~~l~~~g~Cv~~Cp~G~y~~~~-~~~~~C~~C~~ 307 (501)
T 1mox_A 269 KKCPRNYVVTDHGSCVRACGADSYEMEE-DGVRKCKKCEG 307 (501)
T ss_dssp SSCCTTCEECTTSBEESSCCSSCCCBCS-SSSCBCCCC-C
T ss_pred cccCcccEeccCCEEeccCCCCCeecCC-CCCCcCcCCCc
Confidence 4799997 367798 89999998631 12247999973
No 39
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=48.91 E-value=4.6 Score=47.16 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=12.4
Q ss_pred CCCCCCCcccceeCCCCccccccCCCCCCcccCCC
Q 000976 554 ACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 554 ~CP~GlyG~fC~eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
.|++|+.|..|++|+.|+|.... +...|.+|+=
T Consensus 463 ~C~~g~~G~~Ce~C~~G~~g~~~--~~~~C~~C~C 495 (525)
T 4aqs_A 463 YCKRLVTGQRCDQCLPQHWGLSN--DLDGCRPCDC 495 (525)
T ss_dssp CBCTTCCSTTTCC----------------------
T ss_pred ECCCCCcCCCcccCCCCccCCCC--CCCCCcCCCC
Confidence 59999999999999999997543 3456988873
No 40
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=48.30 E-value=13 Score=42.65 Aligned_cols=59 Identities=29% Similarity=0.581 Sum_probs=34.3
Q ss_pred cCCCCCCCccccee-CCCCccccccCCCCCCcc-cCCCCC-CCCC------ceEEeeeCCccCCCCCccccCCcc
Q 000976 553 KACPKGLYGIFCEE-CPVGTYKNVTGSDKSLCH-QCPPQE-FPHR------AVYISVRGGIAETPCPYRCISERY 618 (1204)
Q Consensus 553 k~CP~GlyG~fC~e-CP~GtYK~~tGs~~~~C~-pCp~~~-~P~r------a~yiyvr~G~~~~~CpY~C~sdk~ 618 (1204)
=.||+||.|..|+. |+.|+|-. .|. +|.... ..+. .-.-.-+.|.+...|...|.++++
T Consensus 218 C~C~~G~~G~~Ce~~C~~g~~g~-------~C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~ 285 (423)
T 2gy5_A 218 CICPPGFMGRTCEKACELHTFGR-------TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFY 285 (423)
T ss_dssp EECCTTEESTTSCEECCTTEEST-------TSCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBC
T ss_pred EeCCCCccCCCcccccCCCCCCC-------CcCccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCc
Confidence 35999999999996 99998732 354 454211 1110 011222335556677766776655
No 41
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=47.96 E-value=10 Score=44.58 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=21.0
Q ss_pred CcccchhhhHHhhcccCccccccceEeEEEecCCCCCCCc
Q 000976 682 HSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPW 721 (1204)
Q Consensus 682 ~sf~~LeSL~Ev~~~~r~eDl~~Hv~RmYf~G~NT~~~PW 721 (1204)
.++.||++|+.+... .+.....=||++-+....+-|
T Consensus 367 ~sLsFl~nL~~I~G~----~l~~~~~al~I~~N~nL~~L~ 402 (478)
T 1igr_A 367 VSLSFLKNLRLILGE----EQLEGNYSFYVLDNQNLQQLW 402 (478)
T ss_dssp SCSTTCCSCCEECCS----SCBTTTEEEEEECCSSCCCSS
T ss_pred cCchHHcCeeEEeCc----ccCCCcEEEEEecCcCccccc
Confidence 455677777755433 333334558888776666554
No 42
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=45.37 E-value=11 Score=46.88 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=18.2
Q ss_pred ccccccceEeEEEecCCCCCCCccc
Q 000976 699 AEESHSHVHRMYFMGPNTFSQPWHL 723 (1204)
Q Consensus 699 ~eDl~~Hv~RmYf~G~NT~~~PW~L 723 (1204)
-+++.++.+=+|++-+.....=|--
T Consensus 390 g~~~~~~~~~l~~~~n~~l~~l~~~ 414 (897)
T 2dtg_E 390 GETLEIGNYSFYALDNQNLRQLWDW 414 (897)
T ss_dssp CTTCBTTTEEEEEESCTTCCBSCCT
T ss_pred CeeccCCCEEEEEEeccChhhhCcc
Confidence 4577778788999987777766643
No 43
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C*
Probab=41.04 E-value=46 Score=29.69 Aligned_cols=15 Identities=67% Similarity=1.367 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCCCc
Q 000976 366 GVGSGGGHGGKGGLG 380 (1204)
Q Consensus 366 G~GgGGGHGG~GG~G 380 (1204)
+-|.-|+|||.||.|
T Consensus 25 gpgcdgghggnggng 39 (81)
T 2pne_A 25 GPGCDGGHGGNGGNG 39 (81)
T ss_dssp CTTCBCCCCCCCCCB
T ss_pred CCCccCCcCccCCCC
Confidence 345566777777655
No 44
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=30.98 E-value=20 Score=42.88 Aligned_cols=31 Identities=29% Similarity=0.680 Sum_probs=23.7
Q ss_pred cCCCCCCC--cccc-eeCCCCccccccCCCCCCcccCCC
Q 000976 553 KACPKGLY--GIFC-EECPVGTYKNVTGSDKSLCHQCPP 588 (1204)
Q Consensus 553 k~CP~Gly--G~fC-~eCP~GtYK~~tGs~~~~C~pCp~ 588 (1204)
+.||.+|. +..| .+||.|+|+. ...|.||..
T Consensus 271 ~~Cp~~~~~~~~~Cv~~CP~g~~~~-----~~~C~~C~~ 304 (551)
T 3i2t_A 271 KECPGHLLRDNGACVRSCPQDKMDK-----GGECVPCNG 304 (551)
T ss_dssp SSCCTTSEEETTEEESSCCTTEEES-----SSBEEECSS
T ss_pred hhCCHHHcccCCcccccCCCCCccc-----CCeeeECCC
Confidence 58998873 6678 4899999864 258999973
No 45
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}
Probab=28.99 E-value=41 Score=32.23 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCceEEccCCCCCC-C--cccceeCCC-CccccccCCCCCCcc--cCCCCCCCCCceEEeeeCCccCCCCCccccCCcc
Q 000976 546 ENGTTTGKACPKGL-Y--GIFCEECPV-GTYKNVTGSDKSLCH--QCPPQEFPHRAVYISVRGGIAETPCPYRCISERY 618 (1204)
Q Consensus 546 ~~GTI~gk~CP~Gl-y--G~fC~eCP~-GtYK~~tGs~~~~C~--pCp~~~~P~ra~yiyvr~G~~~~~CpY~C~sdk~ 618 (1204)
..|+.....|.+|| . |..=..|-. |++.. ...|+ .|+.-..|..+.......-.....|.|.|++++.
T Consensus 25 ~~g~~v~y~C~~Gy~~l~G~~~~~C~~~G~Ws~-----~p~C~~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~Gy~ 98 (133)
T 2a55_A 25 KTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY-----NTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFF 98 (133)
T ss_dssp CTTCCCCCBCCTTEESCCSCCCCEECSSSSEEC-----CCCSEECBCCCCCCCTTBCCCCCSTTBSSCBCCCCBCTTCB
T ss_pred CCCCEEEEEeCCCCcccCCCCEEEECCCCeECC-----CCcCccCCCcCCCccCCceEEcCCCCcCCCEEEEEcCCCCE
Confidence 45777788999999 3 666666665 77764 35797 6987544444444322222336789999998654
No 46
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=25.07 E-value=28 Score=40.59 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCCCCCCcccceeCCCCcccccc--C-------CCCCCcccCCC
Q 000976 554 ACPKGLYGIFCEECPVGTYKNVT--G-------SDKSLCHQCPP 588 (1204)
Q Consensus 554 ~CP~GlyG~fC~eCP~GtYK~~t--G-------s~~~~C~pCp~ 588 (1204)
.|+.++.|..|+.|..|+|.... | .....|+||+-
T Consensus 316 ~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~C 359 (426)
T 3zyj_B 316 ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS 359 (426)
T ss_dssp CCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC
T ss_pred eCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCC
Confidence 39999999999999999985421 1 12456999885
No 47
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=22.59 E-value=4.9e+02 Score=27.24 Aligned_cols=48 Identities=10% Similarity=-0.089 Sum_probs=25.4
Q ss_pred ceeeccCCCCCccee---EEEe-ccceeecce-eeeeeEeeeEEEEecCceEE
Q 000976 102 ETLLLEFPNQPLWTN---VYVQ-NCARATVPL-LWSRVQVQGQISLSCGGVLS 149 (1204)
Q Consensus 102 ~t~ll~fp~~plw~~---v~~~-~~a~~~~pl-~wsr~qv~g~i~l~~~~~~~ 149 (1204)
+||-+.++...-|-| +-++ ..-+|.||. .+.++.+.|.-.+...+.|.
T Consensus 64 g~L~I~~~~~~~~~~~~~~~~~~~~~~v~V~~p~L~~i~~~gsg~i~~~~~l~ 116 (250)
T 3jx8_A 64 GTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTK 116 (250)
T ss_dssp TEEEEEECBCTTTTTSCBCEEECSCEEEEEEESCCSEEEEESSCEEEECSCEE
T ss_pred CEEEEEEcCCccccccceeecCCcEEEEEEEccceeeEEecccEEEEEcCcee
Confidence 567777766544432 1121 345555554 46777776655555555443
No 48
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=21.36 E-value=40 Score=40.66 Aligned_cols=42 Identities=24% Similarity=0.620 Sum_probs=0.0
Q ss_pred cCCCCCC---Ccccc-eeCCCCccccccCCCCCCcccCCCCCCCCCceEEeeeCCccCCCCCccc
Q 000976 553 KACPKGL---YGIFC-EECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRC 613 (1204)
Q Consensus 553 k~CP~Gl---yG~fC-~eCP~GtYK~~tGs~~~~C~pCp~~~~P~ra~yiyvr~G~~~~~CpY~C 613 (1204)
+.||..| .+..| .+||.|+|......+...|+||. ..||-.|
T Consensus 276 ~~Cp~~~~~~~~~~Cv~~CP~g~~~~~~~~~~~~C~~C~-------------------g~C~k~C 321 (608)
T 1n8y_C 276 TTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCS-------------------KPCARVC 321 (608)
T ss_dssp SSCCTTCEECTTSBEESSCCTTEEEEECTTSCEEEEECS-------------------SCCCCCE
T ss_pred hcCCcccEeccCCeEeccCCCCCcccccCCCCCccccCC-------------------CCCCCcC
No 49
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=20.53 E-value=61 Score=37.30 Aligned_cols=20 Identities=40% Similarity=0.988 Sum_probs=17.9
Q ss_pred CCCCCCCccccee-CCCCccc
Q 000976 554 ACPKGLYGIFCEE-CPVGTYK 573 (1204)
Q Consensus 554 ~CP~GlyG~fC~e-CP~GtYK 573 (1204)
.|++||.|..|+. |+.|+|-
T Consensus 266 ~C~~G~~G~~C~~~C~~G~~G 286 (423)
T 2gy5_A 266 SCATGWKGLQCNEACHPGFYG 286 (423)
T ss_dssp ECCBTCBSGGGCBCCCTTBCS
T ss_pred EeCCCcccccccCccCCCCcC
Confidence 6999999999996 9999973
Done!