BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000978
(1203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 191/307 (62%), Gaps = 22/307 (7%)
Query: 886 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 945
L+ + I + V FDDI + K L+E+V+LP RPELF L P +G+LLFGPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPP 157
Query: 946 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1005
G GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+D+VD
Sbjct: 158 GNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217
Query: 1006 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1065
S+L R GEH+A R++K EF++ +DG+++ +R+LV+ ATNRP +LDEAV+RR +R
Sbjct: 218 SLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276
Query: 1066 LMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIX 1123
+ V+LP+ R +L+ +L K+ SP + +A MTDGYSGSDL L AA PI
Sbjct: 277 VYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
Query: 1124 XXXXXXXXXXXXXXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQ 1183
+++R + + DF + +++ SVS ++ + ++
Sbjct: 336 ELKPEQVKNM--------------SASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIR 379
Query: 1184 WNELYGE 1190
WN+ +G+
Sbjct: 380 WNKDFGD 386
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 180/295 (61%), Gaps = 20/295 (6%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V ++DI +E K T+KE+V+ P+ RP++F L P KGILLFGPPGTGKT++ K +A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
+++GA F +IS SS+TSKW GEGEK V+A+F++A P+VIF+DE+DS+L +R + GEH
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEH 197
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 1077
E+ R++K EF+V DG T +RILV+ ATNRP ++DEA RRL +RL + LP+A R
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257
Query: 1078 KILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXXX 1136
+I+ +++KE + + + I +D +SG+D+ LC A+ PI
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPD 317
Query: 1137 XXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 1191
+RP+ DF+ A V SVS + + + E WN+ +G G
Sbjct: 318 --------------QVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 356
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 185/311 (59%), Gaps = 27/311 (8%)
Query: 885 RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 944
+L+ D I V + DI + K L+E+V+LP RPELF L P KG+LLFGP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGP 62
Query: 945 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1004
PG GKT+LA+AVATE A F+NIS +S+TSK+ G+GEK V+A+F++A + PS+IF+DEV
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDTERILVLAATNRPFDLDEAVIRRLP 1063
DS+ + EHEA R++K EF+V +DGL D +RI+VLAATNRP +LDEA +RR
Sbjct: 123 DSL-LSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 1064 RRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
+R+ V+LPD R +L +L K+ D + +A +TDGYSGSDL L AA PI
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 1123 XXXXXXXXXXXXXXXXXXXXXXXLSGCADI---RPLNMDDFKYAHERVCASVSSESVNMS 1179
C DI R + DF + +R+ SV+ +S+N
Sbjct: 242 RELNVEQVK-----------------CLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 284
Query: 1180 ELLQWNELYGE 1190
E +W++ YG+
Sbjct: 285 E--KWSQDYGD 293
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+D+VD++ G R GE
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 164
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 1077
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 223
Query: 1078 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 224 TMFEINVGDTPSVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 269
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+DEVD++ G R GE
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGES 140
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 1077
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 141 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 199
Query: 1078 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 200 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 245
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 193 bits (490), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+D+VD++ G R GE
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 149
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 1077
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 208
Query: 1078 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 209 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 254
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 192 bits (488), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+D+VD++ G R GE
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 131
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 1077
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 132 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190
Query: 1078 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 191 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 236
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 146/227 (64%), Gaps = 6/227 (2%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 188
Query: 958 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016
TEA + F +IS S + SKW GE EK VK +F LA + PS+IF+DE+DS+ G R + E
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 247
Query: 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNR 1076
EA R++K EF+V G+ D + ILVL ATN P+ LD A+ RR +R+ + LP+A R
Sbjct: 248 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306
Query: 1077 AKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
A + ++ L S + DF + TDGYSG+D+ + A +P+
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 144/227 (63%), Gaps = 6/227 (2%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 66
Query: 958 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016
TEA + F +IS S + SKW GE EK VK +F LA + PS+IF+DE+DS+ G R E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NE 125
Query: 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNR 1076
EA R++K EF+V G+ D + ILVL ATN P+ LD A+ RR +R+ + LP+ R
Sbjct: 126 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184
Query: 1077 AKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
A + ++ L S + DF + TDGYSG+D+ + A +P+
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 231
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 176 bits (445), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPG 1015
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1016 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 1073
A ++ N+ + DG+ TK + + ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1117
+R IL+ L K ++ DVD + +A MT+G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1076 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 1135
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 1136 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1195
++ MDDF++A + S E+V + W ++ G +R
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487
Query: 1196 K 1196
+
Sbjct: 488 E 488
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 176 bits (445), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPG 1015
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1016 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 1073
A ++ N+ + DG+ TK + + ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1117
+R IL+ L K ++ DVD + +A MT+G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1076 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 1135
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 1136 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1195
++ MDDF++A + S E+V + W ++ G +R
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487
Query: 1196 K 1196
+
Sbjct: 488 E 488
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPG 1015
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 1016 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 1073
A ++ N+ + DG+ TK + + ++ ATNRP +D A++R RL + + + LPD
Sbjct: 131 GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1117
+R IL+ L K ++ DVD + +A MT+G+SG+DL +C A
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
Length = 285
Score = 172 bits (437), Expect = 9e-43, Method: Composition-based stats.
Identities = 98/230 (42%), Positives = 140/230 (60%), Gaps = 9/230 (3%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V ++DIG LE ++E+V LPL+ PELF K + P KGILL+GPPGTGKT+LAKAVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPGTGKTLLAKAVA 72
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 1014
TE A FI + S + K+ GEG VK +F LA + APS+IF+DE+D++ +R +
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 1015 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
G+ E R + + + DG + +I + ATNRP LD A++R R R + V PD
Sbjct: 133 GDREVQRTLM-QLLAEMDGFDARGDVKI--IGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
R +IL++ K +L+ DV+ + IA MT+G G++LK +C A I
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAI 239
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 15/294 (5%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1076 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 1135
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 1136 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 1189
++ MDDF++A + S E+V + W ++ G
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 15/294 (5%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1076 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 1135
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 1136 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 1189
++ MDDF++A + S E+V + W ++ G
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 15/294 (5%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1076 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 1135
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 1136 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 1189
++ MDDF++A + S E+V + W ++ G
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of
Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 6/227 (2%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1076 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI 423
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 140/226 (61%), Gaps = 10/226 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
+TFD IG L L+E++ LPL+ PE+F + + KP KG+LL+GPPGTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-- 1015
GANFI S I K+ GE + ++ +F+ A + P +IF+DEVD++ GRR + G
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 1016 -EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
+ E R + E + DG +I++ ATNRP LD A++R RL R++ + LP+
Sbjct: 297 ADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118
R +I ++ AK + + DF+A M+DG++G+D++N C T A
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN-CATEA 398
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 11/228 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VT+ DIGALE++++ L ++ P++ P+ F L P G+LL GPPG GKT+LAKAVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017
E+G NFI++ + + + GE E+ V+ VF A AP VIF DEVD++ RR + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RET 124
Query: 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 1075
A ++ N+ + DGL + +++ ++AATNRP +D A++R RL + L V LP +
Sbjct: 125 GASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 1076 RAKILQVIL---AKEDLSPDVDFDAIAN--MTDGYSGSDLKNLCVTAA 1118
R IL+ I K L DV+ +AIA D Y+G+DL L A+
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREAS 230
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 151 bits (382), Expect = 2e-36, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 10/228 (4%)
Query: 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 955
I TF D+ + K+ + ELV L+ P F K P KG+L+ GPPGTGKT+LAKA
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKA 64
Query: 956 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP- 1014
+A EA F IS S + G G V+ +F A K AP +IF+DE+D+ +GR+
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAG 123
Query: 1015 --GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNL 1070
G H+ + N+ +V DG + E I+V+AATNRP LD A++R R R+++V L
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 1071 PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118
PD R +IL+V + + L+PD+D IA T G+SG+DL NL AA
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958
++ DIG LE+ +KE V LPL PEL+ + + KP KG++L+G PGTGKT+LAKAVA
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 959 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP---G 1015
+ A F+ I S + K+ G+G + + +F +A + APS++F+DE+D++ +R + G
Sbjct: 239 QTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298
Query: 1016 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 1073
E E R M E + DG D + V+ ATN+ LD A+IR R+ R+++ PD
Sbjct: 299 EREIQRTML-ELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
Query: 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118
+ KIL + +K +LS DV+ + + D SG+D++ +C A
Sbjct: 356 STKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 10/232 (4%)
Query: 892 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 951
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTGKT+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTL 64
Query: 952 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011
LA+AVA EA F +IS S + G G V+ +F+ A AP ++F+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 1012 ENP---GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRL 1066
G H+ + N+ +V DG +K E I+V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 1067 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118
+V+ PD R KIL++ + L+ DV+ + IA T G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 9/224 (4%)
Query: 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958
T+ D+G L+ + L E ++LP++R + F + P KG L++GPPGTGKT+LA+A A
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAA 237
Query: 959 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR---ENPG 1015
+ A F+ ++ + + GEG K V+ F+LA + AP++IF+DE+D++ +R E G
Sbjct: 238 QTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG 297
Query: 1016 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 1073
+ E R M E + DG + D R+ VLAATNR LD A++R RL R++ LP
Sbjct: 298 DREVQRTML-ELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE 354
Query: 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1117
+RA+ILQ+ K D+++ +A TD ++G+ LK + V A
Sbjct: 355 DSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 135/232 (58%), Gaps = 10/232 (4%)
Query: 892 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 951
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTG T+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATL 64
Query: 952 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011
LA+AVA EA F +IS S + G G V+ +F+ A AP ++F+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 1012 ENP---GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRL 1066
G H+ + N+ +V DG +K E I+V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 1067 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118
+V+ PD R KIL++ + L+ DV+ + IA T G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 139/237 (58%), Gaps = 13/237 (5%)
Query: 886 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 945
++ + +P S T+D +G L +KE++ LP++ PELF + +P KG++L+GPP
Sbjct: 137 MMVEKVPDS----TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 946 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1005
GTGKT+LA+AVA FI +S + + K+ GEG + V+ +F +A + APS+IF+DE+D
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 1006 SMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR-- 1060
S+ R G+ E R M E + DG T ++ I ++ ATNR LD A++R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPG 308
Query: 1061 RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1117
R+ R++ P RA+IL++ K +L+ ++ +A +G SG+D+K +C A
Sbjct: 309 RIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEA 365
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 20/253 (7%)
Query: 887 LADVIPP------SDIG------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK 934
L D++PP S +G VT+ D+G L+ K ++E V LPL + +L+ + +
Sbjct: 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-D 204
Query: 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 994
P +G+LL+GPPGTGKTML KAVA A FI ++ S K+ GEG + V+ VF LA +
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 995 APSVIFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052
APS+IF+DEVDS+ +R G ++++ E + DG + + V+ ATNR
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRAD 322
Query: 1053 DLDEAVIR--RLPRRLMV-NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109
LD A++R RL R++ +L D R I I +K L+P+ D D++ D SG+
Sbjct: 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAV 382
Query: 1110 LKNLCVTAAHRPI 1122
+ + A R +
Sbjct: 383 IAAIMQEAGLRAV 395
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 9/225 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VT+ D+G ++ + L+E+V LPL PE F + P KGILL+GPPGTGKT+ A+AVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGILLYGPPGTGKTLCARAVA 264
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 1014
A FI + S + K+ GEG + V+ +F +A +IF DE+D++ G R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 1015 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
G++E R M E + DG + I V+ ATNRP LD A++R R+ R++ +LPD
Sbjct: 325 GDNEVQRTML-ELITQLDGFDPRGN--IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1117
RA I ++ + + ++ I+ + +G++L+++C A
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 134 bits (337), Expect = 3e-31, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
V F D+ E K+ + E+V L+ PE + P KG+LL GPPGTGKT+LAKAVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-- 1015
EA F ++ SS + G G V+ +F A K APS+IF+DE+D++ R G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 1016 -EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
++ + N+ + DG +++ ++VLAATNRP LD A++R R R+++V+ PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118
R +IL+V + L+ DV+ +A +T G +G+DL N+ AA
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 147/296 (49%), Gaps = 45/296 (15%)
Query: 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 955
+GV+F D+ + K ++E V L+ PE F + P KG LL GPPG GKT+LAKA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 956 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR---- 1011
VATEA F+ ++ + G G V+++F A AP ++++DE+D++ +R
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 1012 ---ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRL 1066
N E + + N+ +V DG+ T T+ ++VLA+TNR LD A++R RL R +
Sbjct: 119 SGFSNTEEEQTL----NQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHV 172
Query: 1067 MVNLPDAPNRAKILQVILAKEDLSPDVDF--DAIANMTDGYSGSDLKNLCVTAAHRPIXX 1124
++LP R +I + L L+ F +A +T G+SG+D+ N+C AA
Sbjct: 173 FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAA------ 226
Query: 1125 XXXXXXXXXXXXXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSE 1180
G + LN F+YA ERV A + +S +S+
Sbjct: 227 -----------------LHAAREGHTSVHTLN---FEYAVERVLAGTAKKSKILSK 262
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 508
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE- 1016
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+ G
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 1017 --HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 499
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 85
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE- 1016
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+ G
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 144
Query: 1017 --HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 145 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 120 bits (300), Expect = 6e-27, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 70
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 1014
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 129
Query: 1015 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
G ++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 130 GGNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 119 bits (298), Expect = 1e-26, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 958 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 1014
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 1015 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 1072
G ++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 1073 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
Length = 543
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 925 ELFCKGQLTKPCKG--ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEG 980
E +LTK KG + L GPPG GKT LAK++A G F+ IS+ + S+ G
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154
Query: 981 EKYVKAV-------FSLASKIAPSVIFVDEVDSM 1007
YV A+ A K+ P V +DE+D M
Sbjct: 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 929 KGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF--GEG 980
+ QL +P K IL+ GP G GKT +A+ +A A A FI + + T + E
Sbjct: 37 RMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV 96
Query: 981 EKYVKAVFSLASKIAPSV-----IFVDEVDSMLGRRENPGEHEAMRKMKNEF--MVNWDG 1033
+ ++ + A +V +F+DE+D + + E G + ++ + +V
Sbjct: 97 DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGST 156
Query: 1034 LRTK----DTERILVLAA----TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080
+ TK T+ IL +A+ RP DL + RLP R+ + A + +IL
Sbjct: 157 VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 211
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 993
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 994 IAP-SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDTE--RILVLAATN 1049
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 1050 RP 1051
RP
Sbjct: 147 RP 148
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 993
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 994 IAP-SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDTE--RILVLAATN 1049
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 1050 RP 1051
RP
Sbjct: 147 RP 148
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 993
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 994 IAP-SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDTE--RILVLAATN 1049
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 1050 RP 1051
RP
Sbjct: 147 RP 148
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 36/173 (20%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 998
++L+GPPGTGKT LA+ +A A A+ IS + K E + + + + ++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FDLDEA 1057
+FVDEV H + ++ F+ + +D + A T P F+L+ A
Sbjct: 110 LFVDEV------------HRFNKSQQDAFLPH-----IEDGTITFIGATTENPSFELNSA 152
Query: 1058 VIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1110
++ R R +L+ L+ ED+ V A+ + T GY G D+
Sbjct: 153 LLSRA-------------RVYLLKS-LSTEDIE-QVLTQAMEDKTRGYGGQDI 190
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 992
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 120
Query: 993 KIAPSVIFVDEVDSML 1008
K S + VD+++ +L
Sbjct: 121 KSQLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 992
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 121
Query: 993 KIAPSVIFVDEVDSML 1008
K S + VD+++ +L
Sbjct: 122 KSQLSCVVVDDIERLL 137
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 939 ILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFG--------EGEKYVKAVFS 989
+L +GPPGTGKT A+A E G N+ N+ + S G + + +FS
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 108
Query: 990 LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049
K+ I +DE D+M +N A+R++ + TK+T R VLA N
Sbjct: 109 KGFKL----IILDEADAMTNAAQN-----ALRRVIERY--------TKNT-RFCVLA--N 148
Query: 1050 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-AKEDLSPDVDFDAIANMTDG 1104
L A++ + R LP +I V++ K LSP+ + A+ +++G
Sbjct: 149 YAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE-KALIELSNG 203
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 992
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 993 KIAPSVIFVDEVDSMLGRRENP 1014
K ++++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 992
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 993 KIAPSVIFVDEVDSMLGRRENP 1014
K ++++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of
Clpb
Length = 195
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 940 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSITS--KWFGEGEKYVKAV 987
+L G PG GKT + + +A G + + M ++ + K+ GE E+ +K V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 988 FS-LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024
+ LA + ++F+DE+ +M+G + G +A +K
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 144
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator
Of Clpap Protease: Structural Basis Of Differences In
Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 925 ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA----------TEAGANFINISMSSIT- 973
++ C+ + P LL G G GKT +A+ +A A ++ + S+
Sbjct: 200 QVLCRRRKNNP----LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255
Query: 974 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1009
+K+ G+ EK KA+ + S++F+DE+ +++G
Sbjct: 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG 292
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 940 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 987
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 988 FS-LASKIAPSVIFVDEVDSMLG 1009
+ ++F+DE+ +++G
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVG 277
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 937 KGILLFGPPGTGKTMLAKAVATEAGANF 964
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 937 KGILLFGPPGTGKTMLAKAVATEAGANF 964
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 996
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 108
Query: 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031
++ V ++ R E E + + NW
Sbjct: 109 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 143
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
Length = 442
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 996
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 107
Query: 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031
++ V ++ R E E + + NW
Sbjct: 108 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 142
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 996
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 114
Query: 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031
++ V ++ R E E + + NW
Sbjct: 115 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 149
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 38/186 (20%)
Query: 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGEGEKYVKAVFSLASKIA 995
+ +L+GPPG GKT A VA E G + + + S + SK G K S+
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 996 PS-----------VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044
+ VI +DEVD M G G+ + ++ +F R T IL+
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSG-----GDRGGVGQLA-QF------CRKTSTPLILI 185
Query: 1045 LAATN----RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DLSPDVDFDAI 1098
N RPFD R+ + PDA + L I +E L P+V D +
Sbjct: 186 CNERNLPKMRPFD-------RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRL 237
Query: 1099 ANMTDG 1104
T G
Sbjct: 238 IQTTRG 243
>pdb|1LGQ|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
Checkpoint Protein
pdb|1LGQ|B Chain B, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
Checkpoint Protein
Length = 112
Score = 36.2 bits (82), Expect = 0.099, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 126 PWCRLLSQSGQNS--NVPICASIFTVGSSRQCN--FPLKDQAISAVLCKIKHVQSEGSAV 181
PW RLL + +V + +T+G R C+ FP ++ +S C+I V E S
Sbjct: 3 PWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFP-SNKLVSGDHCRI--VVDEKSGQ 59
Query: 182 AMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSLGNH-----AYIFQQL 228
+E + G +N + K +C L++GD + N AY+++ L
Sbjct: 60 VTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESL 111
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 920 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 967
PL PE ILL G PG GKT L K +A+++G +IN+
Sbjct: 2 PLGSPEFML-------LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINI 967
ILL G PG GKT L K +A+++G +IN+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----WFGEGEKYVKAVFSLAS-- 992
ILL GP G+GKT++A+ +A I I++S TS + GE + + AS
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 993 ---KIAPSVIFVDEVDSMLGRREN 1013
K ++F+DE+D + EN
Sbjct: 132 NVQKAQKGIVFIDEIDKISRLSEN 155
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 929 KGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973
+ QL +P K IL+ GP G GKT +A+ +A A A FI + + T
Sbjct: 37 RMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87
>pdb|1LGP|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
Checkpoint Protein Complexed With Tungstate
Length = 116
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 126 PWCRLLSQSGQNS--NVPICASIFTVGSSRQCN--FPLKDQAISAVLCKIKHVQSEGSAV 181
PW RLL + +V + +T+G R C+ FP ++ +S C+I V E S
Sbjct: 3 PWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFP-SNKLVSGDHCRI--VVDEKSGQ 59
Query: 182 AMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSLGNH-----AYIFQQL 228
+E + G +N + K +C L++GD + N AY+++ L
Sbjct: 60 VTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESL 111
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 929 KGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK 982
+ QL +P K IL GP G GKT +A+ +A A A FI + + T G K
Sbjct: 37 RXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGK 94
Query: 983 YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAM 1020
V ++ + A ++ E+ R E+ E +
Sbjct: 95 EVDSIIRDLTDSAXKLVRQQEIAKNRARAEDVAEERIL 132
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 940 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 987
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 988 FS-LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024
+ ++F+DE+ +++G + G +A +K
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLK 155
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 939 ILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSKWFGEGEKYVKA-VF 988
IL+ G PGT K+ + + ++ A G+ ++ + + K G GE Y++A
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK--GTGEYYLEAGAL 387
Query: 989 SLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048
LA + +DE+D M + HEAM + + G+ K R V+AA
Sbjct: 388 VLADG---GIAVIDEIDKMRD-EDRVAIHEAME--QQTVSIAKAGIVAKLNARAAVIAAG 441
Query: 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 1108
N F I P +NLP P +I +D + D + + D +SG
Sbjct: 442 NPKFG---RYISERPVSDNINLP--PTILSRFDLIFILKDQPGEQDRELANYILDVHSGK 496
Query: 1109 DLKNLC 1114
KN+
Sbjct: 497 STKNII 502
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 895 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 948
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 949 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 1008
KT LA +A+E N I+++ + K +G+ + A+ + + V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDVLFIDEI---- 111
Query: 1009 GRRENPGEHEAMRKMKNEFMVN 1030
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration
Motor
Length = 334
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 998
+LL GPPG GKT LA +A+E N I+++ + K +G+ + A+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDV 105
Query: 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030
+F+DE+ R N E + +F ++
Sbjct: 106 LFIDEI-----HRLNKAVEELLYSAIEDFQID 132
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 895 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 948
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 949 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 1008
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1009 GRRENPGEHEAMRKMKNEFMVN 1030
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 895 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 948
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 949 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 1008
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1009 GRRENPGEHEAMRKMKNEFMVN 1030
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 998
+LL GPPG GKT LA +A+E N I+++ + K +G+ + A+ + + V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDV 105
Query: 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030
+F+DE+ R N E + +F ++
Sbjct: 106 LFIDEI-----HRLNKAVEELLYSAIEDFQID 132
>pdb|3TLC|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
pdb|3TLC|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
Length = 371
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 660 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 717
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 718 GSNQTALLD 726
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLB|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
pdb|3TLB|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
Length = 371
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 660 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 717
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 718 GSNQTALLD 726
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLA|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLA|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLE|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
pdb|3TLE|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
Length = 371
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 660 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 717
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 718 GSNQTALLD 726
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain Of
Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 940 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 987
+L G PG GKT + + +A + G +++ +SS+ +K+ G+ E+ +K++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 988 FSLASKIAPSVI-FVDEVDSMLG 1009
V+ F+DE+ +++G
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVG 129
>pdb|3TLZ|A Chain A, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
pdb|3TLZ|B Chain B, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
Length = 371
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 660 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 717
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 718 GSNQTALLD 726
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLG|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 660 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 717
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSXLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 718 GSNQTALLD 726
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLG|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 660 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 717
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSXLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 718 GSNQTALLD 726
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 895 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 948
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 949 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 1008
+T LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 RTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1009 GRRENPGEHEAMRKMKNEFMVN 1030
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 354 NEWRRDSQPASTLGMSLRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAA-- 411
E R P + LR RE +L G+LDGT + ++ P+ L+E K++L A
Sbjct: 266 EEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKDLLRAPFG 325
Query: 412 ------------SYIHLKHKDHAKYTSELTTVNPRILLSGP 440
+ +HLK + EL T PR +L P
Sbjct: 326 IPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGLP 366
>pdb|2Q62|A Chain A, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|B Chain B, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|C Chain C, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|D Chain D, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|E Chain E, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|F Chain F, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|G Chain G, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|H Chain H, Crystal Structure Of Arsh From Sinorhizobium Meliloti
Length = 247
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRIL-LSGPAGSEIYQEMLA---KALAHY 457
+++ + L AA+ L+ D A +T PRIL L G + Y +LA + L +
Sbjct: 4 DDSSHDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEF 63
Query: 458 FGAKLLIFDSHSL 470
FGA++ +FD L
Sbjct: 64 FGAEVKVFDPSGL 76
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 940 LLF-GPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 993
LLF GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 994 IAP------SVIFVDEVDSM 1007
AP +IF+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 941 LFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPS--- 997
++G G GK+ + V + G N I +S + S GE K ++ + A++I
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 998 -VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030
+F++++D+ GR ++ +M N ++N
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 134
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 926 LFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANF 964
L+ + +T +P + +++ G G+GKT +A VA E G F
Sbjct: 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 940 LLF-GPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 993
LLF GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 994 IAP------SVIFVDEVDSM 1007
AP +IF+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 937 KGILLFGPPGTGKTMLA-KAVATEAGANFINISMSSITS 974
+GI+L GPPG+GKTM+ A+ + + + I+ S T+
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1306
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 937 KGILLFGPPGTGKTMLA-KAVATEAGANFINISMSSITS 974
+GI+L GPPG+GKTM+ A+ + + + I+ S T+
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1087
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 943 GPPGTGKTMLAKAVATEAGANFINI-SMSSITSKW 976
GP GTGK+ +AK +A + GA++++ +M I + W
Sbjct: 11 GPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLW 45
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 939 ILLF-GPPGTGKTMLAKAVATEAGANFINISMSSI 972
IL+F GPPG GK AK +A E G F++IS I
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDI 34
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 939 ILLFGPPGTGKTMLAKAVATEA----GANFI--NISMSSITSK---WFGEGEKYVKAVFS 989
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 166
Query: 990 LASKIAPSVIFVDE 1003
+ + S + VD+
Sbjct: 167 AKAILGGSKVRVDQ 180
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 939 ILLFGPPGTGKTMLAKAVATEA----GANFI--NISMSSITSK---WFGEGEKYVKAVFS 989
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 108 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 167
Query: 990 LASKIAPSVIFVDE 1003
+ + S + VD+
Sbjct: 168 AKAILGGSKVRVDQ 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,871,934
Number of Sequences: 62578
Number of extensions: 1468199
Number of successful extensions: 2938
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2753
Number of HSP's gapped (non-prelim): 129
length of query: 1203
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1093
effective length of database: 8,089,757
effective search space: 8842104401
effective search space used: 8842104401
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)