Query 000978
Match_columns 1203
No_of_seqs 686 out of 3901
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 12:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-68 3.7E-73 616.5 42.9 563 385-1194 181-794 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 2.7E-60 5.9E-65 557.6 32.7 479 403-1174 191-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 6.3E-55 1.4E-59 486.7 29.3 380 809-1194 4-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 3.2E-52 6.9E-57 522.8 42.1 539 389-1190 173-731 (733)
5 KOG0736 Peroxisome assembly fa 100.0 2.9E-49 6.3E-54 466.9 38.3 444 643-1174 479-939 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 9.1E-45 2E-49 404.1 24.0 284 894-1190 205-490 (491)
7 COG0464 SpoVK ATPases of the A 100.0 1.6E-43 3.5E-48 426.5 35.9 454 598-1172 20-488 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 8.7E-44 1.9E-48 395.2 24.7 247 895-1170 145-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 6.9E-43 1.5E-47 404.7 23.2 299 895-1196 184-522 (802)
10 KOG0735 AAA+-type ATPase [Post 100.0 7.5E-41 1.6E-45 392.3 37.5 398 640-1129 480-893 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 5E-40 1.1E-44 355.3 19.2 296 891-1192 123-439 (439)
12 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-37 2.3E-42 356.6 22.3 427 598-1118 258-720 (744)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 9E-36 2E-40 355.4 38.4 411 642-1188 67-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 4E-37 8.6E-42 352.2 21.1 270 892-1192 295-566 (752)
15 KOG0740 AAA+-type ATPase [Post 100.0 4.4E-35 9.6E-40 338.3 18.6 280 895-1192 147-427 (428)
16 KOG0652 26S proteasome regulat 100.0 2.2E-34 4.7E-39 306.7 19.2 244 896-1168 166-413 (424)
17 COG0542 clpA ATP-binding subun 100.0 6.9E-34 1.5E-38 347.0 25.6 415 642-1119 247-752 (786)
18 KOG0727 26S proteasome regulat 100.0 1.1E-33 2.4E-38 300.2 21.4 246 894-1168 148-397 (408)
19 KOG0731 AAA+-type ATPase conta 100.0 2E-33 4.3E-38 340.6 23.8 254 893-1176 303-562 (774)
20 KOG0728 26S proteasome regulat 100.0 2.8E-33 6E-38 297.0 21.4 249 895-1172 141-393 (404)
21 KOG0726 26S proteasome regulat 100.0 4.4E-34 9.6E-39 308.4 14.9 244 896-1168 180-427 (440)
22 COG1223 Predicted ATPase (AAA+ 100.0 3E-33 6.6E-38 298.6 19.0 243 897-1172 117-360 (368)
23 PTZ00454 26S protease regulato 100.0 1.7E-32 3.6E-37 321.1 25.5 247 895-1170 139-389 (398)
24 PRK03992 proteasome-activating 100.0 1.6E-31 3.5E-36 313.2 25.2 251 895-1174 125-379 (389)
25 KOG0729 26S proteasome regulat 100.0 2.2E-32 4.7E-37 292.2 16.2 248 896-1172 172-423 (435)
26 KOG0730 AAA+-type ATPase [Post 100.0 2.9E-32 6.3E-37 321.8 17.5 265 897-1198 181-447 (693)
27 COG0465 HflB ATP-dependent Zn 100.0 1.4E-31 3E-36 320.3 19.2 255 895-1179 144-402 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 1.1E-30 2.5E-35 315.1 25.5 270 893-1192 47-320 (495)
29 TIGR02639 ClpA ATP-dependent C 100.0 3.8E-30 8.2E-35 323.2 30.9 390 639-1124 259-714 (731)
30 PTZ00361 26 proteosome regulat 100.0 9E-31 2E-35 308.6 23.6 246 896-1170 178-427 (438)
31 PRK11034 clpA ATP-dependent Cl 100.0 4E-30 8.7E-35 320.3 30.3 394 639-1124 263-718 (758)
32 KOG0732 AAA+-type ATPase conta 100.0 1.3E-31 2.7E-36 331.7 12.0 348 583-1010 288-668 (1080)
33 KOG0737 AAA+-type ATPase [Post 100.0 9.1E-30 2E-34 285.4 16.6 234 374-823 72-317 (386)
34 TIGR03345 VI_ClpV1 type VI sec 100.0 5.3E-28 1.1E-32 306.3 34.5 412 640-1124 265-833 (852)
35 TIGR01242 26Sp45 26S proteasom 100.0 7.3E-29 1.6E-33 288.6 24.2 244 895-1167 116-363 (364)
36 TIGR01243 CDC48 AAA family ATP 100.0 4.5E-29 9.8E-34 314.0 22.0 290 896-1196 173-464 (733)
37 CHL00176 ftsH cell division pr 100.0 1.3E-28 2.8E-33 302.3 23.8 266 894-1190 176-445 (638)
38 TIGR03689 pup_AAA proteasome A 100.0 3.9E-28 8.5E-33 289.9 26.9 274 895-1194 176-504 (512)
39 CHL00095 clpC Clp protease ATP 100.0 1.5E-27 3.3E-32 303.0 32.0 413 642-1124 259-784 (821)
40 PRK10733 hflB ATP-dependent me 100.0 1.3E-27 2.8E-32 295.8 24.9 267 894-1190 145-415 (644)
41 TIGR03346 chaperone_ClpB ATP-d 100.0 1.3E-26 2.8E-31 295.3 34.2 413 640-1124 251-828 (852)
42 PRK10865 protein disaggregatio 100.0 6.7E-27 1.5E-31 297.0 29.1 413 642-1123 258-830 (857)
43 KOG0651 26S proteasome regulat 100.0 2.7E-28 5.9E-33 266.7 13.5 245 894-1167 125-373 (388)
44 KOG0732 AAA+-type ATPase conta 99.9 5.3E-27 1.1E-31 290.9 19.3 267 895-1175 259-533 (1080)
45 CHL00206 ycf2 Ycf2; Provisiona 99.9 8.1E-27 1.8E-31 298.4 20.9 207 933-1172 1627-1882(2281)
46 KOG0741 AAA+-type ATPase [Post 99.9 5.8E-27 1.3E-31 269.0 9.7 259 902-1174 222-497 (744)
47 PLN00020 ribulose bisphosphate 99.9 1.9E-24 4E-29 245.1 24.9 189 933-1125 145-355 (413)
48 COG1222 RPT1 ATP-dependent 26S 99.9 5.2E-25 1.1E-29 245.9 13.6 235 388-859 145-392 (406)
49 KOG0738 AAA+-type ATPase [Post 99.9 1.9E-21 4.1E-26 218.4 20.6 223 375-816 194-431 (491)
50 KOG0736 Peroxisome assembly fa 99.9 5.8E-22 1.3E-26 236.4 16.3 251 937-1196 432-683 (953)
51 KOG0740 AAA+-type ATPase [Post 99.8 6.4E-20 1.4E-24 213.0 12.7 218 389-823 148-377 (428)
52 CHL00181 cbbX CbbX; Provisiona 99.8 4.5E-19 9.7E-24 200.4 18.2 237 901-1162 23-281 (287)
53 KOG0739 AAA+-type ATPase [Post 99.8 1.9E-19 4.1E-24 196.3 13.7 223 375-815 115-348 (439)
54 KOG0735 AAA+-type ATPase [Post 99.8 2.7E-19 5.8E-24 212.1 14.3 237 937-1195 432-677 (952)
55 TIGR02880 cbbX_cfxQ probable R 99.8 1.8E-18 3.9E-23 195.4 17.7 237 902-1163 23-281 (284)
56 TIGR02881 spore_V_K stage V sp 99.8 2.8E-18 6.2E-23 191.3 18.2 217 899-1127 4-244 (261)
57 KOG0734 AAA+-type ATPase conta 99.8 7.6E-19 1.7E-23 203.0 13.8 238 381-857 291-539 (752)
58 CHL00195 ycf46 Ycf46; Provisio 99.8 2.6E-18 5.6E-23 206.1 16.5 228 369-815 206-442 (489)
59 KOG0742 AAA+-type ATPase [Post 99.8 6E-18 1.3E-22 190.5 17.2 206 899-1115 353-586 (630)
60 KOG1051 Chaperone HSP104 and r 99.8 2.1E-17 4.6E-22 205.5 22.6 332 655-1050 278-710 (898)
61 PTZ00454 26S protease regulato 99.8 2.6E-18 5.7E-23 201.9 13.6 236 386-859 137-386 (398)
62 KOG0744 AAA+-type ATPase [Post 99.8 2.6E-18 5.6E-23 189.6 12.1 193 892-1086 133-342 (423)
63 PF00004 AAA: ATPase family as 99.8 4.1E-18 8.8E-23 168.0 12.1 130 939-1070 1-132 (132)
64 PRK03992 proteasome-activating 99.7 8.1E-18 1.8E-22 197.9 13.9 236 387-860 124-373 (389)
65 COG1223 Predicted ATPase (AAA+ 99.7 5.1E-17 1.1E-21 175.0 14.5 148 639-857 195-353 (368)
66 PTZ00361 26 proteosome regulat 99.7 3.6E-17 7.9E-22 193.7 11.6 233 390-859 179-424 (438)
67 KOG0726 26S proteasome regulat 99.7 1.2E-17 2.5E-22 181.9 4.4 211 391-816 182-405 (440)
68 COG0464 SpoVK ATPases of the A 99.7 4.9E-16 1.1E-20 188.2 18.9 248 920-1195 3-252 (494)
69 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.5E-16 3.2E-21 205.5 13.9 137 634-816 1712-1856(2281)
70 KOG0731 AAA+-type ATPase conta 99.7 1.1E-16 2.3E-21 195.8 11.3 215 385-815 302-531 (774)
71 PF05496 RuvB_N: Holliday junc 99.7 2.4E-16 5.2E-21 169.8 12.5 195 898-1115 21-223 (233)
72 TIGR03689 pup_AAA proteasome A 99.7 5.2E-16 1.1E-20 186.3 16.7 219 386-812 174-405 (512)
73 KOG0727 26S proteasome regulat 99.7 1.3E-16 2.8E-21 170.9 10.1 215 386-815 147-374 (408)
74 TIGR01241 FtsH_fam ATP-depende 99.7 1.4E-16 3.1E-21 193.0 11.6 214 383-813 44-271 (495)
75 KOG0743 AAA+-type ATPase [Post 99.7 1.1E-15 2.4E-20 176.7 17.9 222 898-1130 198-432 (457)
76 KOG0728 26S proteasome regulat 99.7 3.2E-16 6.9E-21 167.7 12.1 149 640-858 226-387 (404)
77 PLN00020 ribulose bisphosphate 99.6 1.2E-14 2.6E-19 165.9 21.3 103 631-778 186-313 (413)
78 TIGR02639 ClpA ATP-dependent C 99.6 6.1E-15 1.3E-19 186.3 20.0 184 899-1107 180-386 (731)
79 TIGR00635 ruvB Holliday juncti 99.6 1.6E-14 3.5E-19 164.1 21.2 198 899-1119 2-207 (305)
80 PRK00080 ruvB Holliday junctio 99.6 3.8E-14 8.1E-19 163.4 24.3 199 898-1119 22-228 (328)
81 COG2256 MGS1 ATPase related to 99.6 5.7E-15 1.2E-19 168.5 16.5 174 898-1111 21-211 (436)
82 CHL00176 ftsH cell division pr 99.6 2E-15 4.3E-20 186.5 13.7 215 383-813 172-399 (638)
83 TIGR01242 26Sp45 26S proteasom 99.6 3.2E-15 6.9E-20 174.6 12.4 213 387-814 115-340 (364)
84 TIGR00763 lon ATP-dependent pr 99.6 1.6E-14 3.6E-19 183.4 18.3 206 902-1125 321-558 (775)
85 KOG0729 26S proteasome regulat 99.6 5.1E-15 1.1E-19 159.7 9.6 215 388-818 171-399 (435)
86 COG2255 RuvB Holliday junction 99.6 8.8E-14 1.9E-18 152.6 18.3 187 898-1106 23-217 (332)
87 KOG0652 26S proteasome regulat 99.5 1.9E-14 4.1E-19 155.0 11.6 234 391-861 168-414 (424)
88 PRK14956 DNA polymerase III su 99.5 1.5E-13 3.2E-18 163.5 19.4 182 898-1116 15-225 (484)
89 PRK12323 DNA polymerase III su 99.5 1.2E-13 2.5E-18 167.8 18.6 183 898-1117 13-229 (700)
90 PRK07003 DNA polymerase III su 99.5 1.5E-13 3.3E-18 168.5 18.8 184 898-1118 13-225 (830)
91 PRK10733 hflB ATP-dependent me 99.5 3.4E-14 7.3E-19 177.0 12.5 125 642-814 232-369 (644)
92 COG0465 HflB ATP-dependent Zn 99.5 6.5E-14 1.4E-18 169.2 13.5 238 383-859 139-390 (596)
93 PRK11034 clpA ATP-dependent Cl 99.5 2.1E-13 4.5E-18 171.4 17.6 196 900-1119 185-407 (758)
94 TIGR02902 spore_lonB ATP-depen 99.5 3.1E-13 6.6E-18 165.1 18.6 220 898-1165 62-330 (531)
95 KOG2004 Mitochondrial ATP-depe 99.5 2.2E-13 4.8E-18 162.9 16.6 173 901-1085 411-597 (906)
96 PRK14960 DNA polymerase III su 99.5 8.1E-13 1.8E-17 160.9 21.5 184 898-1118 12-224 (702)
97 PRK14962 DNA polymerase III su 99.5 7.3E-13 1.6E-17 159.2 20.6 175 898-1108 11-214 (472)
98 TIGR03345 VI_ClpV1 type VI sec 99.5 6.4E-13 1.4E-17 169.7 21.0 184 899-1107 185-391 (852)
99 KOG0615 Serine/threonine prote 99.5 2.9E-14 6.4E-19 162.2 7.5 109 122-230 41-160 (475)
100 PRK07994 DNA polymerase III su 99.5 1.2E-12 2.5E-17 161.3 21.9 184 898-1118 13-225 (647)
101 PRK05342 clpX ATP-dependent pr 99.5 5.7E-13 1.2E-17 157.5 18.3 222 903-1124 73-381 (412)
102 PRK14949 DNA polymerase III su 99.5 7.8E-13 1.7E-17 165.1 20.3 184 898-1118 13-225 (944)
103 KOG2028 ATPase related to the 99.5 1.1E-12 2.4E-17 147.0 19.1 207 898-1168 135-369 (554)
104 PRK14958 DNA polymerase III su 99.5 1.2E-12 2.5E-17 158.9 20.8 184 898-1118 13-225 (509)
105 KOG0651 26S proteasome regulat 99.5 1.3E-13 2.8E-18 152.4 11.3 214 389-817 127-353 (388)
106 PRK14961 DNA polymerase III su 99.5 2.7E-12 5.8E-17 150.2 22.7 184 898-1118 13-225 (363)
107 PRK00149 dnaA chromosomal repl 99.5 2.2E-12 4.7E-17 155.0 20.8 168 937-1118 149-327 (450)
108 PRK14964 DNA polymerase III su 99.5 2.7E-12 5.8E-17 154.1 21.1 184 898-1118 10-222 (491)
109 PRK13342 recombination factor 99.5 3.6E-12 7.7E-17 151.6 21.6 180 898-1118 9-201 (413)
110 PRK08691 DNA polymerase III su 99.4 3.5E-12 7.6E-17 156.7 21.7 185 898-1119 13-226 (709)
111 PRK06645 DNA polymerase III su 99.4 3.5E-12 7.7E-17 154.1 20.7 184 898-1118 18-234 (507)
112 PRK10865 protein disaggregatio 99.4 9.3E-13 2E-17 168.6 16.5 163 899-1086 176-356 (857)
113 PRK04195 replication factor C 99.4 2.7E-12 5.9E-17 155.4 19.2 185 898-1113 11-203 (482)
114 TIGR02928 orc1/cdc6 family rep 99.4 1E-11 2.2E-16 144.5 22.9 201 901-1122 15-255 (365)
115 PLN03025 replication factor C 99.4 3.4E-12 7.5E-17 146.7 18.7 180 898-1115 10-202 (319)
116 TIGR00390 hslU ATP-dependent p 99.4 2.4E-12 5.3E-17 150.2 17.3 179 902-1080 13-342 (441)
117 CHL00095 clpC Clp protease ATP 99.4 2.2E-12 4.9E-17 165.0 18.6 184 899-1107 177-382 (821)
118 TIGR00362 DnaA chromosomal rep 99.4 6.6E-12 1.4E-16 148.8 21.0 167 937-1118 137-315 (405)
119 PRK14951 DNA polymerase III su 99.4 6.4E-12 1.4E-16 154.6 21.0 184 898-1118 13-230 (618)
120 PRK14969 DNA polymerase III su 99.4 6.7E-12 1.5E-16 153.1 20.7 184 898-1118 13-225 (527)
121 PRK07940 DNA polymerase III su 99.4 4.6E-12 1E-16 149.2 18.4 187 899-1115 3-216 (394)
122 TIGR03346 chaperone_ClpB ATP-d 99.4 2.3E-12 5E-17 165.4 17.2 184 899-1107 171-377 (852)
123 PRK00411 cdc6 cell division co 99.4 1.2E-11 2.6E-16 145.6 21.8 225 900-1171 29-286 (394)
124 PRK05201 hslU ATP-dependent pr 99.4 2.4E-12 5.3E-17 150.2 15.7 180 902-1081 16-345 (443)
125 PRK14957 DNA polymerase III su 99.4 1.1E-11 2.3E-16 150.9 21.8 184 898-1118 13-225 (546)
126 TIGR00382 clpX endopeptidase C 99.4 4.4E-12 9.5E-17 149.5 17.6 222 902-1123 78-386 (413)
127 PRK14963 DNA polymerase III su 99.4 9.8E-12 2.1E-16 150.7 21.0 183 898-1117 11-221 (504)
128 COG0466 Lon ATP-dependent Lon 99.4 5.6E-12 1.2E-16 152.3 18.1 172 901-1084 323-508 (782)
129 PRK14959 DNA polymerase III su 99.4 1.3E-11 2.8E-16 151.1 21.7 179 898-1112 13-220 (624)
130 PRK05563 DNA polymerase III su 99.4 1.3E-11 2.7E-16 151.7 21.1 183 898-1117 13-224 (559)
131 PRK07764 DNA polymerase III su 99.4 7.5E-12 1.6E-16 158.6 19.4 181 898-1115 12-223 (824)
132 PRK12402 replication factor C 99.4 1.8E-11 4E-16 140.5 20.9 184 898-1113 12-226 (337)
133 PRK08903 DnaA regulatory inact 99.4 3.3E-11 7.1E-16 131.6 21.5 200 897-1165 14-224 (227)
134 PRK14952 DNA polymerase III su 99.4 1.3E-11 2.7E-16 151.5 19.7 181 898-1115 10-221 (584)
135 TIGR03420 DnaA_homol_Hda DnaA 99.4 3.3E-11 7.2E-16 130.8 20.8 185 898-1119 12-207 (226)
136 KOG0989 Replication factor C, 99.4 8.5E-12 1.8E-16 138.5 15.5 185 898-1113 33-231 (346)
137 PRK12422 chromosomal replicati 99.4 2.7E-11 5.8E-16 145.0 21.0 214 937-1189 142-366 (445)
138 TIGR02397 dnaX_nterm DNA polym 99.4 2.3E-11 4.9E-16 141.0 19.8 184 898-1118 11-223 (355)
139 PRK08084 DNA replication initi 99.4 6.4E-11 1.4E-15 130.6 22.3 183 897-1116 18-212 (235)
140 PRK06893 DNA replication initi 99.3 2.3E-11 5E-16 133.6 18.1 157 937-1115 40-205 (229)
141 PRK14965 DNA polymerase III su 99.3 2.8E-11 6.1E-16 149.2 20.8 182 898-1116 13-223 (576)
142 PF00498 FHA: FHA domain; Int 99.3 3.6E-12 7.7E-17 113.4 9.0 67 147-216 1-68 (68)
143 PTZ00112 origin recognition co 99.3 4.2E-11 9E-16 147.6 21.0 181 901-1103 755-969 (1164)
144 PF05673 DUF815: Protein of un 99.3 2.6E-11 5.7E-16 132.7 17.3 190 897-1116 23-244 (249)
145 PHA02544 44 clamp loader, smal 99.3 4.1E-11 8.9E-16 137.0 19.1 175 898-1104 18-201 (316)
146 PRK10787 DNA-binding ATP-depen 99.3 1.6E-11 3.5E-16 155.5 17.2 205 901-1124 322-558 (784)
147 PRK05896 DNA polymerase III su 99.3 4.1E-11 8.9E-16 146.1 19.7 182 898-1116 13-223 (605)
148 PRK13341 recombination factor 99.3 5E-11 1.1E-15 149.6 21.0 180 898-1118 25-222 (725)
149 PRK14953 DNA polymerase III su 99.3 6.3E-11 1.4E-15 143.2 21.0 184 898-1118 13-225 (486)
150 PRK06647 DNA polymerase III su 99.3 6.1E-11 1.3E-15 145.5 21.1 183 898-1117 13-224 (563)
151 PRK14086 dnaA chromosomal repl 99.3 7.2E-11 1.6E-15 144.1 21.1 166 937-1117 315-492 (617)
152 PRK09111 DNA polymerase III su 99.3 7.2E-11 1.6E-15 145.5 21.2 189 898-1117 21-237 (598)
153 PRK07133 DNA polymerase III su 99.3 4.8E-11 1E-15 148.1 19.7 188 898-1116 15-222 (725)
154 PRK14088 dnaA chromosomal repl 99.3 2E-11 4.4E-16 146.1 15.9 167 937-1117 131-309 (440)
155 PRK06305 DNA polymerase III su 99.3 7.6E-11 1.7E-15 141.5 20.2 182 898-1116 14-225 (451)
156 CHL00081 chlI Mg-protoporyphyr 99.3 5.9E-11 1.3E-15 137.4 16.1 244 897-1172 13-327 (350)
157 TIGR02640 gas_vesic_GvpN gas v 99.3 7.1E-11 1.5E-15 132.4 16.2 141 937-1084 22-198 (262)
158 PRK08727 hypothetical protein; 99.3 4E-10 8.6E-15 124.3 21.6 145 937-1104 42-196 (233)
159 PRK14970 DNA polymerase III su 99.3 1.7E-10 3.6E-15 135.1 19.5 183 898-1115 14-211 (367)
160 PRK08451 DNA polymerase III su 99.3 1.3E-10 2.9E-15 140.8 19.0 185 898-1119 11-224 (535)
161 COG2812 DnaX DNA polymerase II 99.3 3.2E-11 6.9E-16 144.7 13.4 191 898-1119 13-226 (515)
162 PRK06620 hypothetical protein; 99.2 3.1E-10 6.6E-15 123.7 19.4 143 937-1116 45-192 (214)
163 PRK00440 rfc replication facto 99.2 3.7E-10 8.1E-15 128.7 21.0 182 898-1117 14-207 (319)
164 PRK14955 DNA polymerase III su 99.2 1.7E-10 3.6E-15 136.7 18.7 181 898-1115 13-230 (397)
165 PRK13407 bchI magnesium chelat 99.2 6.5E-11 1.4E-15 136.6 14.7 169 898-1085 5-217 (334)
166 PRK14954 DNA polymerase III su 99.2 4.1E-10 8.9E-15 139.2 22.2 179 898-1107 13-223 (620)
167 PRK14950 DNA polymerase III su 99.2 3E-10 6.6E-15 140.6 21.0 182 898-1116 13-224 (585)
168 PRK14948 DNA polymerase III su 99.2 1.6E-10 3.5E-15 143.3 18.4 181 898-1115 13-224 (620)
169 PRK05642 DNA replication initi 99.2 3.9E-10 8.5E-15 124.4 18.2 157 937-1116 46-211 (234)
170 PRK14087 dnaA chromosomal repl 99.2 4.8E-10 1E-14 134.6 20.0 168 937-1119 142-325 (450)
171 PF00308 Bac_DnaA: Bacterial d 99.2 5.4E-10 1.2E-14 122.2 17.2 168 937-1118 35-213 (219)
172 TIGR02903 spore_lon_C ATP-depe 99.2 8.7E-10 1.9E-14 137.0 20.9 230 898-1167 151-430 (615)
173 cd00009 AAA The AAA+ (ATPases 99.2 3.3E-10 7.2E-15 111.6 12.6 123 937-1069 20-150 (151)
174 cd00060 FHA Forkhead associate 99.1 1.6E-10 3.5E-15 109.4 9.4 96 128-226 2-101 (102)
175 PRK14971 DNA polymerase III su 99.1 1.5E-09 3.3E-14 134.6 19.7 180 898-1114 14-223 (614)
176 TIGR02030 BchI-ChlI magnesium 99.1 8.7E-10 1.9E-14 127.6 15.8 241 899-1172 2-314 (337)
177 TIGR01650 PD_CobS cobaltochela 99.1 2.7E-10 5.9E-15 130.3 11.4 142 937-1084 65-233 (327)
178 COG0593 DnaA ATPase involved i 99.1 4E-09 8.6E-14 123.7 21.2 167 936-1117 113-290 (408)
179 TIGR02442 Cob-chelat-sub cobal 99.1 5.8E-10 1.3E-14 139.3 15.3 233 899-1171 2-308 (633)
180 KOG0991 Replication factor C, 99.1 9.4E-10 2E-14 118.0 13.7 186 898-1116 24-218 (333)
181 COG1474 CDC6 Cdc6-related prot 99.1 6E-09 1.3E-13 122.0 20.7 221 902-1172 18-270 (366)
182 PHA02244 ATPase-like protein 99.1 1.5E-09 3.3E-14 125.5 15.0 135 937-1080 120-269 (383)
183 PF07724 AAA_2: AAA domain (Cd 99.1 4.3E-10 9.3E-15 118.5 9.4 115 934-1051 1-130 (171)
184 COG2607 Predicted ATPase (AAA+ 99.1 9.9E-09 2.1E-13 111.1 19.5 190 897-1116 56-276 (287)
185 PRK09112 DNA polymerase III su 99.1 6.2E-09 1.4E-13 121.3 19.6 189 898-1118 20-245 (351)
186 PRK09087 hypothetical protein; 99.0 5E-09 1.1E-13 115.2 17.2 172 937-1167 45-222 (226)
187 PRK05564 DNA polymerase III su 99.0 1.1E-08 2.3E-13 117.7 19.4 173 899-1108 2-186 (313)
188 smart00350 MCM minichromosome 99.0 3.1E-09 6.6E-14 129.8 15.6 175 902-1086 204-402 (509)
189 COG1219 ClpX ATP-dependent pro 99.0 8.5E-09 1.8E-13 115.2 16.9 97 937-1033 98-202 (408)
190 PRK07471 DNA polymerase III su 99.0 9.6E-09 2.1E-13 120.4 18.2 180 898-1110 16-236 (365)
191 COG1239 ChlI Mg-chelatase subu 99.0 5.4E-09 1.2E-13 121.4 15.7 168 898-1086 14-234 (423)
192 KOG0745 Putative ATP-dependent 99.0 6.9E-09 1.5E-13 119.5 15.6 73 937-1009 227-305 (564)
193 KOG0744 AAA+-type ATPase [Post 99.0 1.4E-09 3E-14 121.4 9.3 201 382-782 130-346 (423)
194 TIGR00678 holB DNA polymerase 99.0 1.1E-08 2.3E-13 108.8 15.3 144 935-1105 13-184 (188)
195 TIGR03015 pepcterm_ATPase puta 98.9 4.5E-08 9.8E-13 109.1 20.2 192 937-1168 44-267 (269)
196 COG0714 MoxR-like ATPases [Gen 98.9 2.3E-09 5E-14 124.0 10.1 138 937-1083 44-202 (329)
197 TIGR02031 BchD-ChlD magnesium 98.9 1.6E-08 3.4E-13 125.5 17.5 220 936-1171 16-262 (589)
198 COG1224 TIP49 DNA helicase TIP 98.9 5E-08 1.1E-12 110.5 19.7 91 1051-1168 342-433 (450)
199 PF07728 AAA_5: AAA domain (dy 98.9 6.1E-10 1.3E-14 112.2 3.9 112 938-1062 1-139 (139)
200 smart00382 AAA ATPases associa 98.9 5.9E-09 1.3E-13 101.3 10.6 127 937-1071 3-147 (148)
201 COG0542 clpA ATP-binding subun 98.9 8.7E-09 1.9E-13 128.3 14.6 181 900-1105 169-372 (786)
202 KOG1969 DNA replication checkp 98.9 1.8E-08 3.9E-13 122.1 16.2 164 937-1113 327-511 (877)
203 COG3829 RocR Transcriptional r 98.9 1.9E-09 4.1E-14 128.1 7.7 205 897-1131 241-474 (560)
204 COG2204 AtoC Response regulato 98.9 2.6E-09 5.7E-14 126.9 8.7 204 899-1130 139-368 (464)
205 PF00004 AAA: ATPase family as 98.9 8.5E-09 1.8E-13 101.6 10.6 62 642-706 45-118 (132)
206 PRK07399 DNA polymerase III su 98.9 1.4E-08 3.1E-13 116.7 14.0 180 899-1111 2-220 (314)
207 TIGR03354 VI_FHA type VI secre 98.9 3.1E-09 6.7E-14 125.4 8.2 83 138-224 17-103 (396)
208 PRK05707 DNA polymerase III su 98.9 5.3E-08 1.2E-12 112.7 18.0 154 934-1110 20-201 (328)
209 COG0470 HolB ATPase involved i 98.9 8.4E-09 1.8E-13 117.7 10.8 146 902-1078 2-175 (325)
210 PRK04132 replication factor C 98.9 2.5E-08 5.3E-13 126.5 15.5 161 934-1118 562-736 (846)
211 PRK11331 5-methylcytosine-spec 98.8 2.7E-08 5.9E-13 118.0 14.4 122 937-1070 195-357 (459)
212 PF07726 AAA_3: ATPase family 98.8 1.4E-09 3.1E-14 108.6 2.9 113 938-1062 1-129 (131)
213 TIGR00764 lon_rel lon-related 98.8 4.2E-08 9.2E-13 121.9 16.4 50 898-963 15-64 (608)
214 PF01078 Mg_chelatase: Magnesi 98.8 1.6E-09 3.5E-14 116.5 3.2 45 900-960 2-46 (206)
215 TIGR02974 phageshock_pspF psp 98.8 2.6E-08 5.6E-13 115.4 12.9 133 937-1078 23-177 (329)
216 PRK13531 regulatory ATPase Rav 98.8 8.3E-08 1.8E-12 114.7 17.0 141 937-1083 40-193 (498)
217 PRK11608 pspF phage shock prot 98.8 3.4E-08 7.4E-13 114.3 12.4 151 900-1078 5-184 (326)
218 TIGR01817 nifA Nif-specific re 98.8 2.2E-08 4.8E-13 123.1 11.5 195 898-1128 193-420 (534)
219 COG3604 FhlA Transcriptional r 98.8 2.5E-08 5.3E-13 117.4 11.0 203 897-1121 219-456 (550)
220 PRK08058 DNA polymerase III su 98.8 1.6E-07 3.6E-12 108.8 17.8 149 899-1082 3-180 (329)
221 COG1221 PspF Transcriptional r 98.8 2.4E-08 5.3E-13 117.0 10.3 199 898-1121 75-309 (403)
222 PF05621 TniB: Bacterial TniB 98.8 3.6E-07 7.8E-12 103.4 19.0 177 937-1124 62-272 (302)
223 PRK10820 DNA-binding transcrip 98.7 6.3E-08 1.4E-12 118.7 13.7 159 897-1078 200-382 (520)
224 TIGR00368 Mg chelatase-related 98.7 1.5E-07 3.2E-12 114.4 16.7 153 898-1074 189-394 (499)
225 PRK15424 propionate catabolism 98.7 6.1E-08 1.3E-12 118.5 13.1 168 898-1086 216-418 (538)
226 PRK11388 DNA-binding transcrip 98.7 1E-07 2.3E-12 119.6 15.2 160 898-1078 322-500 (638)
227 COG1220 HslU ATP-dependent pro 98.7 9.2E-08 2E-12 107.7 12.4 85 996-1081 251-346 (444)
228 PF06068 TIP49: TIP49 C-termin 98.7 3.5E-07 7.7E-12 105.4 17.2 65 899-972 22-88 (398)
229 KOG2035 Replication factor C, 98.7 5.3E-07 1.1E-11 99.6 16.8 181 899-1110 11-226 (351)
230 TIGR02329 propionate_PrpR prop 98.7 9.2E-08 2E-12 117.0 12.1 167 898-1085 209-402 (526)
231 PRK06871 DNA polymerase III su 98.7 9.6E-07 2.1E-11 102.0 19.5 167 905-1109 6-200 (325)
232 PRK05022 anaerobic nitric oxid 98.7 1.3E-07 2.9E-12 115.7 13.1 151 900-1078 186-365 (509)
233 TIGR00602 rad24 checkpoint pro 98.7 3.4E-07 7.4E-12 113.6 16.4 192 898-1113 81-324 (637)
234 PRK15429 formate hydrogenlyase 98.7 2.2E-07 4.8E-12 117.6 15.2 160 898-1078 373-554 (686)
235 PRK07993 DNA polymerase III su 98.6 1E-06 2.2E-11 102.4 17.7 153 934-1110 22-202 (334)
236 PF00158 Sigma54_activat: Sigm 98.6 2.9E-08 6.3E-13 104.4 4.2 106 937-1050 23-143 (168)
237 KOG1514 Origin recognition com 98.6 6.8E-07 1.5E-11 108.7 15.9 228 903-1172 398-660 (767)
238 KOG0742 AAA+-type ATPase [Post 98.6 2.7E-07 5.8E-12 105.7 11.4 94 642-780 430-532 (630)
239 PTZ00111 DNA replication licen 98.6 1.1E-07 2.5E-12 120.1 9.2 188 880-1085 438-658 (915)
240 PRK08769 DNA polymerase III su 98.5 1.8E-06 3.9E-11 99.6 17.4 172 905-1111 8-207 (319)
241 PF13177 DNA_pol3_delta2: DNA 98.5 4.3E-07 9.3E-12 95.0 11.2 133 905-1070 1-160 (162)
242 PRK08116 hypothetical protein; 98.5 5.3E-07 1.1E-11 101.8 12.1 68 937-1006 115-189 (268)
243 PRK12377 putative replication 98.5 5.7E-07 1.2E-11 100.3 12.0 111 883-1007 56-175 (248)
244 PRK06964 DNA polymerase III su 98.5 1.1E-06 2.5E-11 102.1 14.9 133 934-1083 19-203 (342)
245 smart00240 FHA Forkhead associ 98.5 1.3E-07 2.8E-12 79.4 5.2 50 147-199 1-52 (52)
246 KOG2227 Pre-initiation complex 98.5 6.7E-06 1.5E-10 96.6 19.8 236 902-1171 151-419 (529)
247 PRK06090 DNA polymerase III su 98.5 4.7E-06 1E-10 96.1 18.2 165 905-1109 7-198 (319)
248 TIGR02915 PEP_resp_reg putativ 98.5 6.9E-07 1.5E-11 107.2 11.4 133 937-1078 163-317 (445)
249 smart00763 AAA_PrkA PrkA AAA d 98.4 2.7E-06 5.9E-11 98.9 15.4 60 902-969 52-118 (361)
250 PRK13406 bchD magnesium chelat 98.4 1.8E-06 3.8E-11 106.9 14.1 208 936-1171 25-254 (584)
251 PRK09862 putative ATP-dependen 98.4 3.1E-06 6.8E-11 102.8 15.8 152 899-1074 189-391 (506)
252 TIGR02881 spore_V_K stage V sp 98.4 1.8E-06 3.9E-11 96.9 12.6 84 657-778 105-193 (261)
253 PRK07952 DNA replication prote 98.4 2.4E-06 5.2E-11 95.2 12.6 108 886-1007 57-174 (244)
254 KOG0482 DNA replication licens 98.4 3.1E-06 6.6E-11 99.4 13.7 221 878-1120 328-588 (721)
255 PRK10923 glnG nitrogen regulat 98.4 2.3E-06 5E-11 103.5 13.3 170 937-1129 162-364 (469)
256 COG1241 MCM2 Predicted ATPase 98.4 1.7E-06 3.7E-11 107.3 12.2 189 880-1087 274-486 (682)
257 KOG0990 Replication factor C, 98.4 1E-06 2.2E-11 99.3 8.8 158 898-1089 38-208 (360)
258 PLN02927 antheraxanthin epoxid 98.4 9.4E-07 2E-11 110.4 9.4 89 136-228 545-647 (668)
259 CHL00181 cbbX CbbX; Provisiona 98.4 3.1E-06 6.7E-11 96.5 12.8 85 657-779 122-212 (287)
260 COG1716 FOG: FHA domain [Signa 98.3 1.4E-06 3.1E-11 92.5 9.3 75 140-220 84-159 (191)
261 PF03215 Rad17: Rad17 cell cyc 98.3 9.8E-06 2.1E-10 99.1 16.6 195 898-1113 16-264 (519)
262 PRK11361 acetoacetate metaboli 98.3 7.4E-06 1.6E-10 98.6 15.4 126 937-1078 167-321 (457)
263 PRK15115 response regulator Gl 98.3 6.4E-06 1.4E-10 98.9 14.0 133 937-1078 158-312 (444)
264 PRK13765 ATP-dependent proteas 98.3 5.4E-06 1.2E-10 103.4 13.6 48 898-961 28-75 (637)
265 PRK08699 DNA polymerase III su 98.3 4.1E-06 8.9E-11 97.1 11.5 132 934-1082 19-183 (325)
266 KOG1942 DNA helicase, TBP-inte 98.3 2.2E-05 4.7E-10 87.4 16.1 91 995-1103 296-400 (456)
267 KOG2680 DNA helicase TIP49, TB 98.3 2.2E-05 4.7E-10 87.6 15.9 93 1051-1170 339-432 (454)
268 TIGR01818 ntrC nitrogen regula 98.2 4.7E-06 1E-10 100.5 11.7 173 937-1129 158-360 (463)
269 COG0606 Predicted ATPase with 98.2 6.2E-07 1.3E-11 105.9 3.6 48 897-960 175-222 (490)
270 PRK08181 transposase; Validate 98.2 3E-06 6.5E-11 95.7 8.8 69 937-1007 107-179 (269)
271 KOG0478 DNA replication licens 98.2 1.1E-05 2.5E-10 97.9 13.9 190 879-1085 416-627 (804)
272 PF01637 Arch_ATPase: Archaeal 98.2 5E-06 1.1E-10 89.5 9.8 161 937-1107 21-229 (234)
273 KOG0480 DNA replication licens 98.2 1.1E-05 2.4E-10 97.3 13.2 216 879-1118 332-571 (764)
274 PRK05342 clpX ATP-dependent pr 98.2 6.8E-06 1.5E-10 98.0 10.5 84 383-470 59-144 (412)
275 PRK06835 DNA replication prote 98.1 5E-06 1.1E-10 96.4 8.5 69 937-1007 184-258 (329)
276 TIGR00763 lon ATP-dependent pr 98.1 4.2E-05 9E-10 98.4 17.5 55 402-467 326-380 (775)
277 PRK10365 transcriptional regul 98.1 8.5E-06 1.8E-10 97.6 10.5 170 937-1130 163-366 (441)
278 PRK08939 primosomal protein Dn 98.1 1.7E-05 3.7E-10 91.3 11.7 70 936-1007 156-229 (306)
279 PF13173 AAA_14: AAA domain 98.1 8.8E-06 1.9E-10 81.5 8.0 69 937-1007 3-73 (128)
280 COG3456 Predicted component of 98.1 4.1E-06 8.8E-11 97.1 5.8 74 144-226 25-101 (430)
281 PF13401 AAA_22: AAA domain; P 98.0 2E-05 4.3E-10 78.0 9.6 98 937-1049 5-126 (131)
282 PF14532 Sigma54_activ_2: Sigm 98.0 6.4E-06 1.4E-10 83.5 6.1 57 937-1007 22-81 (138)
283 PF01695 IstB_IS21: IstB-like 98.0 4.6E-06 9.9E-11 88.7 5.1 69 936-1006 47-119 (178)
284 TIGR02880 cbbX_cfxQ probable R 98.0 2E-05 4.3E-10 89.8 10.5 84 657-778 121-210 (284)
285 PRK06526 transposase; Provisio 98.0 7.3E-06 1.6E-10 91.9 5.8 69 937-1007 99-171 (254)
286 PRK06921 hypothetical protein; 98.0 1.6E-05 3.5E-10 89.7 8.6 67 937-1006 118-188 (266)
287 TIGR00382 clpX endopeptidase C 98.0 3.1E-05 6.7E-10 92.2 11.2 83 383-469 65-151 (413)
288 COG1219 ClpX ATP-dependent pro 98.0 9.1E-06 2E-10 91.5 6.0 86 381-470 47-133 (408)
289 COG1484 DnaC DNA replication p 97.9 2E-05 4.2E-10 88.5 8.3 70 936-1007 105-179 (254)
290 PF12775 AAA_7: P-loop contain 97.9 1.8E-05 4E-10 89.6 7.8 140 937-1086 34-195 (272)
291 PF12774 AAA_6: Hydrolytic ATP 97.9 0.0001 2.2E-09 81.7 12.4 137 937-1089 33-182 (231)
292 PF00493 MCM: MCM2/3/5 family 97.9 1.2E-06 2.6E-11 101.8 -3.1 175 902-1087 25-224 (331)
293 cd01120 RecA-like_NTPases RecA 97.9 6.7E-05 1.5E-09 76.0 10.1 71 939-1009 2-99 (165)
294 PRK05917 DNA polymerase III su 97.9 0.00012 2.6E-09 83.4 13.0 118 934-1071 17-154 (290)
295 PF05729 NACHT: NACHT domain 97.9 8.9E-05 1.9E-09 75.7 10.8 140 938-1086 2-165 (166)
296 PRK09183 transposase/IS protei 97.9 3E-05 6.5E-10 87.3 7.6 70 937-1007 103-176 (259)
297 PRK00080 ruvB Holliday junctio 97.8 0.0002 4.2E-09 83.2 14.4 59 392-464 23-81 (328)
298 COG3283 TyrR Transcriptional r 97.8 5.4E-05 1.2E-09 86.4 9.3 125 938-1078 229-377 (511)
299 PRK07276 DNA polymerase III su 97.8 0.00066 1.4E-08 77.6 17.6 154 934-1114 22-198 (290)
300 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00087 1.9E-08 80.6 17.7 163 937-1115 111-314 (634)
301 COG2256 MGS1 ATPase related to 97.7 0.00013 2.8E-09 85.0 10.4 73 657-776 104-176 (436)
302 KOG2170 ATPase of the AAA+ sup 97.7 0.00047 1E-08 77.7 14.3 133 903-1051 84-225 (344)
303 PF00931 NB-ARC: NB-ARC domain 97.7 0.00066 1.4E-08 76.4 15.9 158 935-1114 18-203 (287)
304 PRK07132 DNA polymerase III su 97.7 0.00084 1.8E-08 77.2 16.0 141 937-1104 19-177 (299)
305 TIGR00635 ruvB Holliday juncti 97.7 0.00032 6.9E-09 80.2 12.7 61 392-466 2-62 (305)
306 COG1618 Predicted nucleotide k 97.7 0.00052 1.1E-08 71.3 12.7 24 937-960 6-29 (179)
307 KOG0477 DNA replication licens 97.6 0.00012 2.7E-09 88.1 8.4 164 881-1068 438-629 (854)
308 KOG1881 Anion exchanger adapto 97.6 0.0001 2.2E-09 90.1 7.2 86 142-228 173-267 (793)
309 PRK05818 DNA polymerase III su 97.6 0.00081 1.8E-08 75.5 13.6 121 934-1071 5-147 (261)
310 COG3284 AcoR Transcriptional a 97.5 0.00019 4.1E-09 87.7 7.8 140 938-1087 338-502 (606)
311 KOG0481 DNA replication licens 97.5 0.00037 8.1E-09 82.6 9.8 172 902-1083 332-527 (729)
312 PRK14962 DNA polymerase III su 97.5 0.0011 2.4E-08 80.7 14.2 88 643-777 102-190 (472)
313 PF05673 DUF815: Protein of un 97.5 0.0027 5.9E-08 70.6 15.3 109 643-777 94-208 (249)
314 KOG0479 DNA replication licens 97.4 0.00034 7.4E-09 83.9 8.6 172 902-1085 302-499 (818)
315 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00039 8.4E-09 81.9 9.0 102 933-1051 59-168 (362)
316 PF00910 RNA_helicase: RNA hel 97.4 0.00033 7.1E-09 68.3 6.8 23 939-961 1-23 (107)
317 KOG1968 Replication factor C, 97.4 0.00026 5.7E-09 90.8 7.2 160 939-1117 360-532 (871)
318 PF05496 RuvB_N: Holliday junc 97.4 0.00026 5.6E-09 77.6 6.1 31 434-466 52-82 (233)
319 KOG2228 Origin recognition com 97.4 0.00085 1.8E-08 76.7 10.3 161 902-1084 25-219 (408)
320 PRK13342 recombination factor 97.4 0.0017 3.6E-08 78.0 13.4 76 656-778 91-166 (413)
321 TIGR02237 recomb_radB DNA repa 97.3 0.00083 1.8E-08 72.6 9.6 74 936-1009 12-111 (209)
322 PRK00149 dnaA chromosomal repl 97.3 0.001 2.2E-08 80.8 11.3 79 658-778 212-295 (450)
323 COG5271 MDN1 AAA ATPase contai 97.3 0.00074 1.6E-08 87.8 10.1 134 937-1084 1544-1703(4600)
324 PHA00729 NTP-binding motif con 97.3 0.00047 1E-08 76.0 7.5 28 937-964 18-45 (226)
325 TIGR01618 phage_P_loop phage n 97.3 0.0006 1.3E-08 75.0 8.2 75 933-1009 9-95 (220)
326 COG3267 ExeA Type II secretory 97.3 0.006 1.3E-07 67.9 15.8 174 938-1123 53-255 (269)
327 cd01124 KaiC KaiC is a circadi 97.3 0.0012 2.5E-08 69.6 10.1 71 939-1009 2-109 (187)
328 PRK00771 signal recognition pa 97.3 0.0094 2E-07 72.0 18.6 37 935-971 94-133 (437)
329 COG4650 RtcR Sigma54-dependent 97.3 0.0003 6.6E-09 78.4 5.4 67 938-1008 210-295 (531)
330 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0022 4.7E-08 72.4 11.8 36 431-468 20-55 (262)
331 PLN03210 Resistant to P. syrin 97.2 0.0046 9.9E-08 83.3 16.7 172 899-1106 182-389 (1153)
332 TIGR00362 DnaA chromosomal rep 97.2 0.0025 5.4E-08 76.2 12.5 79 658-778 200-283 (405)
333 PHA02544 44 clamp loader, smal 97.2 0.0037 8E-08 71.9 13.3 76 657-778 100-175 (316)
334 PF13207 AAA_17: AAA domain; P 97.2 0.00033 7.3E-09 68.6 4.1 31 939-969 2-32 (121)
335 KOG1882 Transcriptional regula 97.2 0.0008 1.7E-08 73.0 7.1 104 117-220 161-280 (293)
336 TIGR02928 orc1/cdc6 family rep 97.2 0.0086 1.9E-07 70.1 16.2 94 642-777 116-213 (365)
337 PF03266 NTPase_1: NTPase; In 97.1 0.00016 3.4E-09 76.4 1.2 27 938-964 1-30 (168)
338 cd01121 Sms Sms (bacterial rad 97.1 0.0033 7.1E-08 74.5 11.5 98 935-1032 81-197 (372)
339 PRK04195 replication factor C 97.0 0.0092 2E-07 73.1 15.2 56 401-469 19-74 (482)
340 PRK08118 topology modulation p 97.0 0.0014 3E-08 69.1 6.9 33 937-969 2-34 (167)
341 PRK11823 DNA repair protein Ra 97.0 0.0049 1.1E-07 74.8 12.4 97 935-1031 79-194 (446)
342 COG5271 MDN1 AAA ATPase contai 97.0 0.0017 3.8E-08 84.6 8.6 134 938-1085 890-1048(4600)
343 PF14516 AAA_35: AAA-like doma 97.0 0.012 2.5E-07 68.9 15.1 173 935-1118 30-244 (331)
344 PRK07261 topology modulation p 97.0 0.0017 3.7E-08 68.6 7.3 33 938-970 2-34 (171)
345 PHA02624 large T antigen; Prov 96.9 0.0032 6.8E-08 77.6 9.9 118 937-1070 432-561 (647)
346 PRK07764 DNA polymerase III su 96.9 0.015 3.2E-07 75.4 16.4 76 656-778 119-194 (824)
347 TIGR00390 hslU ATP-dependent p 96.9 0.0011 2.3E-08 78.9 5.7 82 385-471 2-84 (441)
348 PRK06645 DNA polymerase III su 96.9 0.0092 2E-07 73.4 13.7 74 658-778 129-202 (507)
349 PF05707 Zot: Zonular occluden 96.9 0.0013 2.7E-08 70.9 5.5 121 939-1069 3-144 (193)
350 PRK00131 aroK shikimate kinase 96.9 0.0011 2.3E-08 68.9 4.5 33 936-968 4-36 (175)
351 PRK04841 transcriptional regul 96.9 0.016 3.4E-07 75.9 16.3 153 937-1107 33-220 (903)
352 PRK10787 DNA-binding ATP-depen 96.8 0.013 2.9E-07 75.6 15.2 34 431-466 348-381 (784)
353 PRK14088 dnaA chromosomal repl 96.8 0.0084 1.8E-07 72.7 12.6 79 657-777 194-277 (440)
354 PRK15455 PrkA family serine pr 96.8 0.0015 3.3E-08 80.0 6.2 63 899-969 74-137 (644)
355 KOG1051 Chaperone HSP104 and r 96.8 0.0058 1.3E-07 78.4 11.5 139 937-1086 209-365 (898)
356 PRK08533 flagellar accessory p 96.8 0.0086 1.9E-07 66.4 11.6 74 935-1008 23-130 (230)
357 cd01129 PulE-GspE PulE/GspE Th 96.8 0.005 1.1E-07 69.7 9.3 93 898-1005 57-159 (264)
358 TIGR02012 tigrfam_recA protein 96.8 0.007 1.5E-07 70.3 10.6 76 935-1010 54-148 (321)
359 PRK09361 radB DNA repair and r 96.8 0.0059 1.3E-07 66.9 9.6 36 935-970 22-60 (225)
360 PRK13341 recombination factor 96.7 0.0056 1.2E-07 78.2 10.3 75 657-778 109-183 (725)
361 cd01131 PilT Pilus retraction 96.7 0.0029 6.4E-08 68.3 6.8 68 938-1005 3-84 (198)
362 PF13671 AAA_33: AAA domain; P 96.7 0.003 6.6E-08 63.5 6.2 32 939-972 2-33 (143)
363 PRK14974 cell division protein 96.6 0.019 4E-07 67.3 12.9 35 936-970 140-177 (336)
364 PRK04296 thymidine kinase; Pro 96.6 0.014 3E-07 62.8 11.0 69 938-1007 4-90 (190)
365 cd00983 recA RecA is a bacter 96.6 0.0092 2E-07 69.4 10.3 74 937-1010 56-148 (325)
366 PRK13695 putative NTPase; Prov 96.6 0.0085 1.8E-07 63.1 9.2 23 938-960 2-24 (174)
367 COG3854 SpoIIIAA ncharacterize 96.6 0.012 2.6E-07 64.5 10.2 71 937-1007 138-230 (308)
368 PRK14949 DNA polymerase III su 96.6 0.028 6.1E-07 72.4 15.0 42 657-701 119-160 (944)
369 PRK14961 DNA polymerase III su 96.6 0.033 7.1E-07 65.9 14.7 75 657-778 119-193 (363)
370 PF06309 Torsin: Torsin; Inte 96.6 0.0083 1.8E-07 60.5 8.2 52 902-960 26-77 (127)
371 PRK00411 cdc6 cell division co 96.6 0.031 6.7E-07 66.3 14.5 93 642-777 125-221 (394)
372 PRK13947 shikimate kinase; Pro 96.5 0.0021 4.6E-08 67.0 4.2 31 938-968 3-33 (171)
373 PRK12724 flagellar biosynthesi 96.5 0.041 8.9E-07 66.0 15.2 35 937-971 224-262 (432)
374 PRK03839 putative kinase; Prov 96.5 0.0022 4.7E-08 67.8 3.9 31 938-968 2-32 (180)
375 PHA02774 E1; Provisional 96.5 0.017 3.7E-07 71.2 11.8 130 937-1092 435-589 (613)
376 cd01394 radB RadB. The archaea 96.5 0.018 3.8E-07 62.8 11.0 34 937-970 20-56 (218)
377 PF13604 AAA_30: AAA domain; P 96.5 0.0072 1.6E-07 65.3 7.8 98 937-1050 19-132 (196)
378 PRK14086 dnaA chromosomal repl 96.5 0.012 2.7E-07 73.2 10.6 79 658-778 378-461 (617)
379 TIGR02858 spore_III_AA stage I 96.4 0.0059 1.3E-07 69.4 7.1 69 937-1005 112-204 (270)
380 PRK12323 DNA polymerase III su 96.4 0.024 5.2E-07 70.9 12.8 75 656-777 123-197 (700)
381 cd00464 SK Shikimate kinase (S 96.4 0.0028 6E-08 64.6 4.1 31 938-968 1-31 (154)
382 PRK05800 cobU adenosylcobinami 96.4 0.018 3.9E-07 61.0 10.3 68 938-1009 3-90 (170)
383 COG1373 Predicted ATPase (AAA+ 96.4 0.052 1.1E-06 65.1 15.3 133 938-1090 39-186 (398)
384 KOG2543 Origin recognition com 96.4 0.02 4.4E-07 66.8 11.3 58 903-971 8-65 (438)
385 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.025 5.4E-07 62.9 11.7 36 934-969 19-57 (237)
386 PRK00625 shikimate kinase; Pro 96.4 0.0029 6.4E-08 67.2 4.2 31 938-968 2-32 (173)
387 PF13191 AAA_16: AAA ATPase do 96.4 0.0085 1.8E-07 62.6 7.6 59 903-972 2-63 (185)
388 PRK11331 5-methylcytosine-spec 96.4 0.021 4.5E-07 68.9 11.6 26 432-459 194-219 (459)
389 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.03 6.5E-07 61.0 11.9 53 390-459 11-63 (226)
390 PRK10536 hypothetical protein; 96.4 0.018 3.9E-07 64.8 10.2 22 938-959 76-97 (262)
391 PRK12402 replication factor C 96.4 0.032 7E-07 64.4 12.8 49 392-459 13-61 (337)
392 COG5245 DYN1 Dynein, heavy cha 96.4 0.019 4.1E-07 75.2 11.4 137 937-1086 1495-1660(3164)
393 PRK12723 flagellar biosynthesi 96.3 0.021 4.4E-07 68.1 11.2 113 936-1062 174-309 (388)
394 COG1485 Predicted ATPase [Gene 96.3 0.015 3.2E-07 67.5 9.6 102 933-1051 62-171 (367)
395 KOG0743 AAA+-type ATPase [Post 96.3 0.045 9.8E-07 65.3 13.7 63 400-466 205-267 (457)
396 PRK14960 DNA polymerase III su 96.3 0.03 6.6E-07 70.2 12.9 75 657-778 118-192 (702)
397 TIGR02397 dnaX_nterm DNA polym 96.3 0.052 1.1E-06 63.3 14.3 73 658-777 118-190 (355)
398 TIGR00416 sms DNA repair prote 96.3 0.02 4.3E-07 69.7 11.1 76 934-1009 92-184 (454)
399 TIGR01650 PD_CobS cobaltochela 96.3 0.071 1.5E-06 62.1 15.0 34 432-467 64-97 (327)
400 PF06745 KaiC: KaiC; InterPro 96.3 0.031 6.7E-07 61.3 11.5 93 935-1031 18-147 (226)
401 PRK14964 DNA polymerase III su 96.3 0.063 1.4E-06 65.8 15.1 75 657-778 116-190 (491)
402 PRK13949 shikimate kinase; Pro 96.3 0.0035 7.6E-08 66.2 3.9 32 937-968 2-33 (169)
403 cd00046 DEXDc DEAD-like helica 96.3 0.013 2.8E-07 56.8 7.6 23 938-960 2-24 (144)
404 PRK07003 DNA polymerase III su 96.3 0.049 1.1E-06 69.1 14.3 42 657-701 119-160 (830)
405 PRK10867 signal recognition pa 96.3 0.12 2.6E-06 62.6 17.2 73 935-1007 99-195 (433)
406 PRK09376 rho transcription ter 96.3 0.0092 2E-07 70.6 7.6 25 937-961 170-194 (416)
407 PRK14532 adenylate kinase; Pro 96.2 0.0039 8.5E-08 66.3 4.0 34 938-973 2-35 (188)
408 PF00437 T2SE: Type II/IV secr 96.2 0.0077 1.7E-07 67.9 6.5 97 897-1005 100-207 (270)
409 TIGR02533 type_II_gspE general 96.2 0.015 3.2E-07 71.4 9.4 94 897-1005 218-321 (486)
410 PRK06217 hypothetical protein; 96.2 0.0043 9.4E-08 66.0 4.2 31 938-968 3-33 (183)
411 PRK05563 DNA polymerase III su 96.2 0.055 1.2E-06 67.6 14.5 75 656-777 118-192 (559)
412 PRK05201 hslU ATP-dependent pr 96.2 0.0041 8.9E-08 74.1 4.4 67 402-471 21-87 (443)
413 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.004 8.7E-08 65.7 3.9 33 939-973 2-34 (183)
414 TIGR01420 pilT_fam pilus retra 96.2 0.0087 1.9E-07 70.2 7.0 69 937-1005 123-205 (343)
415 PRK13948 shikimate kinase; Pro 96.2 0.0051 1.1E-07 65.9 4.5 36 933-968 7-42 (182)
416 PRK14722 flhF flagellar biosyn 96.2 0.014 3.1E-07 69.1 8.6 108 937-1058 138-266 (374)
417 PLN03025 replication factor C 96.2 0.031 6.6E-07 64.9 11.3 75 657-778 99-173 (319)
418 PRK06067 flagellar accessory p 96.2 0.047 1E-06 60.3 12.3 74 935-1008 24-133 (234)
419 PRK06762 hypothetical protein; 96.2 0.011 2.4E-07 61.4 7.0 37 937-973 3-39 (166)
420 PRK04040 adenylate kinase; Pro 96.2 0.04 8.7E-07 59.3 11.3 29 937-965 3-33 (188)
421 PRK14948 DNA polymerase III su 96.1 0.068 1.5E-06 67.5 14.9 70 658-774 122-191 (620)
422 COG0703 AroK Shikimate kinase 96.1 0.0043 9.3E-08 65.7 3.5 32 937-968 3-34 (172)
423 PF00448 SRP54: SRP54-type pro 96.1 0.031 6.8E-07 60.6 10.3 69 937-1005 2-93 (196)
424 cd03283 ABC_MutS-like MutS-lik 96.1 0.036 7.9E-07 60.1 10.7 69 937-1005 26-115 (199)
425 cd00544 CobU Adenosylcobinamid 96.1 0.032 7E-07 59.1 10.0 71 939-1011 2-89 (169)
426 cd02020 CMPK Cytidine monophos 96.1 0.0052 1.1E-07 61.9 3.9 30 939-968 2-31 (147)
427 PRK09354 recA recombinase A; P 96.1 0.034 7.5E-07 65.2 11.0 73 937-1009 61-152 (349)
428 TIGR01425 SRP54_euk signal rec 96.1 0.21 4.6E-06 60.3 17.8 73 935-1007 99-194 (429)
429 TIGR00959 ffh signal recogniti 96.1 0.29 6.2E-06 59.3 19.0 73 935-1007 98-194 (428)
430 PRK14531 adenylate kinase; Pro 96.1 0.0059 1.3E-07 65.0 4.3 31 937-967 3-33 (183)
431 COG4088 Predicted nucleotide k 96.0 0.035 7.7E-07 60.1 9.9 23 938-960 3-25 (261)
432 PRK10436 hypothetical protein; 96.0 0.021 4.6E-07 69.5 9.4 94 897-1005 194-297 (462)
433 PRK05973 replicative DNA helic 96.0 0.055 1.2E-06 60.4 11.9 37 934-970 62-101 (237)
434 cd01428 ADK Adenylate kinase ( 96.0 0.0054 1.2E-07 65.0 3.8 29 939-967 2-30 (194)
435 PRK08691 DNA polymerase III su 96.0 0.057 1.2E-06 68.3 13.1 52 392-461 14-65 (709)
436 PRK06581 DNA polymerase III su 96.0 0.1 2.2E-06 58.3 13.5 144 937-1101 16-176 (263)
437 cd02021 GntK Gluconate kinase 96.0 0.0058 1.3E-07 62.4 3.8 28 939-966 2-29 (150)
438 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.056 1.2E-06 61.1 12.0 36 935-970 35-73 (259)
439 cd00984 DnaB_C DnaB helicase C 96.0 0.057 1.2E-06 59.5 11.9 36 934-969 11-50 (242)
440 PRK14530 adenylate kinase; Pro 96.0 0.0063 1.4E-07 66.4 4.3 30 938-967 5-34 (215)
441 cd01122 GP4d_helicase GP4d_hel 96.0 0.051 1.1E-06 61.1 11.7 35 935-969 29-67 (271)
442 COG4619 ABC-type uncharacteriz 96.0 0.03 6.5E-07 59.0 8.8 26 935-960 28-53 (223)
443 KOG3347 Predicted nucleotide k 96.0 0.0054 1.2E-07 63.1 3.3 32 937-968 8-39 (176)
444 PRK08233 hypothetical protein; 96.0 0.041 8.9E-07 57.7 10.1 32 937-968 4-36 (182)
445 PF13479 AAA_24: AAA domain 96.0 0.026 5.6E-07 61.8 8.9 66 937-1008 4-81 (213)
446 COG2804 PulE Type II secretory 96.0 0.021 4.6E-07 69.1 8.7 100 891-1005 228-337 (500)
447 COG0563 Adk Adenylate kinase a 95.9 0.0075 1.6E-07 64.4 4.3 33 938-972 2-34 (178)
448 cd01393 recA_like RecA is a b 95.9 0.046 9.9E-07 59.7 10.5 37 935-971 18-63 (226)
449 PRK14951 DNA polymerase III su 95.9 0.089 1.9E-06 66.2 14.1 72 659-777 126-197 (618)
450 TIGR02782 TrbB_P P-type conjug 95.9 0.014 3E-07 67.3 6.6 69 937-1005 133-214 (299)
451 TIGR02525 plasmid_TraJ plasmid 95.9 0.016 3.4E-07 68.8 7.1 69 937-1005 150-235 (372)
452 PF10236 DAP3: Mitochondrial r 95.9 0.32 6.9E-06 56.5 17.6 116 995-1111 156-307 (309)
453 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.035 7.6E-07 61.0 9.4 37 935-971 18-63 (235)
454 PRK13764 ATPase; Provisional 95.8 0.015 3.3E-07 72.5 7.1 68 937-1005 258-334 (602)
455 TIGR01313 therm_gnt_kin carboh 95.8 0.0066 1.4E-07 63.0 3.4 28 939-966 1-28 (163)
456 PTZ00088 adenylate kinase 1; P 95.8 0.008 1.7E-07 66.7 4.2 32 937-968 7-38 (229)
457 PRK14963 DNA polymerase III su 95.8 0.098 2.1E-06 64.6 14.0 89 643-778 101-190 (504)
458 TIGR03574 selen_PSTK L-seryl-t 95.8 0.032 7E-07 62.3 9.0 34 939-972 2-38 (249)
459 PRK14965 DNA polymerase III su 95.8 0.083 1.8E-06 66.3 13.6 71 659-776 121-191 (576)
460 PF04665 Pox_A32: Poxvirus A32 95.8 0.088 1.9E-06 58.9 12.3 131 936-1083 13-169 (241)
461 PRK03731 aroL shikimate kinase 95.8 0.009 2E-07 62.5 4.3 32 937-968 3-34 (171)
462 cd00227 CPT Chloramphenicol (C 95.8 0.0075 1.6E-07 63.6 3.7 35 937-971 3-37 (175)
463 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.068 1.5E-06 58.7 11.2 22 937-958 30-51 (213)
464 PRK11889 flhF flagellar biosyn 95.8 0.062 1.3E-06 64.0 11.4 71 937-1007 242-332 (436)
465 KOG0745 Putative ATP-dependent 95.8 0.018 3.9E-07 68.0 6.8 35 434-470 228-262 (564)
466 cd01128 rho_factor Transcripti 95.7 0.026 5.5E-07 63.5 7.8 26 937-962 17-42 (249)
467 smart00487 DEXDc DEAD-like hel 95.7 0.049 1.1E-06 56.2 9.4 24 937-960 25-49 (201)
468 TIGR02538 type_IV_pilB type IV 95.7 0.031 6.8E-07 69.9 9.2 94 897-1005 292-395 (564)
469 PRK04328 hypothetical protein; 95.7 0.092 2E-06 58.9 12.1 36 934-969 21-59 (249)
470 PRK12726 flagellar biosynthesi 95.7 0.094 2E-06 62.2 12.4 99 905-1007 179-297 (407)
471 TIGR03880 KaiC_arch_3 KaiC dom 95.7 0.1 2.2E-06 57.2 12.1 36 935-970 15-53 (224)
472 PRK13946 shikimate kinase; Pro 95.7 0.0093 2E-07 63.6 3.8 32 937-968 11-42 (184)
473 KOG2028 ATPase related to the 95.6 0.025 5.4E-07 65.5 7.2 108 580-702 148-262 (554)
474 COG2909 MalT ATP-dependent tra 95.6 0.13 2.8E-06 65.4 14.1 154 937-1107 38-228 (894)
475 PRK14528 adenylate kinase; Pro 95.6 0.011 2.3E-07 63.4 4.1 31 937-967 2-32 (186)
476 PRK06547 hypothetical protein; 95.6 0.012 2.5E-07 62.6 4.3 34 935-968 14-47 (172)
477 TIGR01360 aden_kin_iso1 adenyl 95.6 0.012 2.6E-07 62.0 4.5 30 937-966 4-33 (188)
478 PRK05057 aroK shikimate kinase 95.6 0.011 2.5E-07 62.4 4.2 33 937-969 5-37 (172)
479 PRK13900 type IV secretion sys 95.6 0.02 4.3E-07 67.0 6.5 69 937-1005 161-245 (332)
480 cd03243 ABC_MutS_homologs The 95.6 0.082 1.8E-06 57.2 10.9 21 937-957 30-50 (202)
481 cd01130 VirB11-like_ATPase Typ 95.6 0.026 5.7E-07 60.3 7.0 69 937-1005 26-110 (186)
482 PRK07133 DNA polymerase III su 95.6 0.11 2.5E-06 66.1 13.5 88 643-777 103-191 (725)
483 PRK14958 DNA polymerase III su 95.6 0.11 2.5E-06 64.1 13.2 40 658-700 120-159 (509)
484 PRK06305 DNA polymerase III su 95.6 0.17 3.6E-06 61.8 14.4 75 656-777 120-194 (451)
485 PRK02496 adk adenylate kinase; 95.6 0.011 2.4E-07 62.7 3.9 30 938-967 3-32 (184)
486 KOG2383 Predicted ATPase [Gene 95.5 0.1 2.2E-06 61.5 11.8 28 933-960 111-138 (467)
487 cd02027 APSK Adenosine 5'-phos 95.5 0.032 7E-07 57.6 7.1 34 939-972 2-38 (149)
488 PRK10416 signal recognition pa 95.5 0.22 4.7E-06 58.1 14.7 35 935-969 113-150 (318)
489 TIGR00064 ftsY signal recognit 95.5 0.28 6E-06 56.0 15.1 36 935-970 71-109 (272)
490 PRK14956 DNA polymerase III su 95.5 0.046 1E-06 66.6 9.3 74 656-776 120-193 (484)
491 PF07693 KAP_NTPase: KAP famil 95.5 0.59 1.3E-05 53.8 18.1 36 934-969 18-59 (325)
492 TIGR01351 adk adenylate kinase 95.5 0.012 2.6E-07 64.1 3.8 29 939-967 2-30 (210)
493 PRK00279 adk adenylate kinase; 95.5 0.013 2.8E-07 64.0 4.1 30 938-967 2-31 (215)
494 PRK08154 anaerobic benzoate ca 95.5 0.02 4.3E-07 66.3 5.8 36 933-968 130-165 (309)
495 cd03115 SRP The signal recogni 95.4 0.052 1.1E-06 56.9 8.4 33 939-971 3-38 (173)
496 PRK12422 chromosomal replicati 95.4 0.076 1.6E-06 64.6 10.9 79 658-778 203-286 (445)
497 PF09848 DUF2075: Uncharacteri 95.4 0.036 7.7E-07 65.3 7.9 23 938-960 3-25 (352)
498 PLN02200 adenylate kinase fami 95.4 0.016 3.4E-07 64.6 4.6 37 936-974 43-79 (234)
499 COG1102 Cmk Cytidylate kinase 95.4 0.013 2.8E-07 61.3 3.6 28 939-966 3-30 (179)
500 TIGR01448 recD_rel helicase, p 95.4 0.06 1.3E-06 69.2 10.4 100 938-1054 340-458 (720)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-68 Score=616.50 Aligned_cols=563 Identities=29% Similarity=0.439 Sum_probs=442.3
Q ss_pred CCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 000978 385 DGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1203)
Q Consensus 385 ~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1203)
...+.+|+|.+|... +.|-..|.+-+. |++||++..|+.- -.+++|||.|||| |+++|||.|+|.++|++||-
T Consensus 181 ~~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lGv--~PprGvLlHGPPG--CGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLGV--RPPRGVLLHGPPG--CGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcCC--CCCCceeeeCCCC--ccHHHHHHHHhhhcCCceEe
Confidence 355668999999988 888888877655 6999999877643 3468999999999 99999999999999999998
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000978 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1203)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1203)
|-...+-+|++
T Consensus 254 isApeivSGvS--------------------------------------------------------------------- 264 (802)
T KOG0733|consen 254 ISAPEIVSGVS--------------------------------------------------------------------- 264 (802)
T ss_pred ecchhhhcccC---------------------------------------------------------------------
Confidence 87644433221
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 000978 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1203)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1203)
T Consensus 265 -------------------------------------------------------------------------------- 264 (802)
T KOG0733|consen 265 -------------------------------------------------------------------------------- 264 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHHhcC----------CCc
Q 000978 625 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL----------PDK 690 (1203)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~----~~~~~~~~lk~~L~~l----------~g~ 690 (1203)
|| .+.-|+.||+.+.+ ..|+||||||||-+-. .+.++-..+...|... ..+
T Consensus 265 ----------GE--SEkkiRelF~~A~~---~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 265 ----------GE--SEKKIRELFDQAKS---NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ----------cc--cHHHHHHHHHHHhc---cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 12 34469999999999 9999999999999765 3455555566666221 248
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHH
Q 000978 691 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 770 (1203)
Q Consensus 691 V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~ 770 (1203)
|+|||+||++|+.|++ |||.|| |+++|.+..|++.+|.+
T Consensus 330 VlVIgATnRPDslDpa-------LRRaGR----------------------------------FdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPA-------LRRAGR----------------------------------FDREICLGVPSETAREE 368 (802)
T ss_pred eEEEecCCCCcccCHH-------Hhcccc----------------------------------ccceeeecCCchHHHHH
Confidence 9999999999999999 999999 88999999999999999
Q ss_pred HHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCC-----ccc--
Q 000978 771 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-----PDA-- 843 (1203)
Q Consensus 771 Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~-----~~~-- 843 (1203)
||+++.+ .+...-+++..+.+-.|.||.|+||.+||.++..+. +.|++.....|. ...
T Consensus 369 IL~~~~~----~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA-----------ikR~ld~~~~p~~~~~~~ed~~ 433 (802)
T KOG0733|consen 369 ILRIICR----GLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA-----------IKRILDQSSSPLTKVPISEDSS 433 (802)
T ss_pred HHHHHHh----hCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH-----------HHHHhhcccCccccCCcccccc
Confidence 9998764 466666888888888999999999999999877643 334443222111 000
Q ss_pred -------c--ccccch-----hhhhhhhHHHHHHHhhHhh--hhcccccCCHHHHHHHHhc--------CcCCCCCCCcc
Q 000978 844 -------R--LVLSCE-----SIQYGIGIFQAIQNESKSL--KKSLKDVVTENEFEKRLLA--------DVIPPSDIGVT 899 (1203)
Q Consensus 844 -------k--l~ls~~-----~l~~al~~lq~i~~~~k~~--k~~~k~~v~~~e~e~~ll~--------~ii~~~~~~vt 899 (1203)
+ +.++.. ++...+ .+.+.+...+. ...-...+.-+||+.++.. .++. .++++
T Consensus 434 ~~~~~~d~S~i~~~~~~~~~~~ld~v~--~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~t--VPdVt 509 (802)
T KOG0733|consen 434 NKDAEEDQSSIKITSNAERPLELDRVV--QDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFAT--VPDVT 509 (802)
T ss_pred CCCccchhhhhhcCCcccccccHHHHH--HHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccccee--cCCCC
Confidence 0 111110 111111 11222211111 1111223567788775531 1111 35799
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE 979 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~ 979 (1203)
|+|||++++++.+|...|.+|.++|++|...++..| .|||||||||||||.||+|+|++.|++|+.|..++|+++|+|+
T Consensus 510 W~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~P-sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 510 WDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAP-SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred hhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCC-CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 999999999999999999999999999999987664 8999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHH
Q 000978 980 GEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI 1059 (1203)
Q Consensus 980 ~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl 1059 (1203)
+|..++++|..|+..+|||||+||||.|.++|+... .....+++++||+.|||+.. +..|.|||+||+|+.+|++++
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiL 665 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAIL 665 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhc
Confidence 999999999999999999999999999999987655 66778999999999999854 678999999999999999999
Q ss_pred h--cccccccCCCCCHHHHHHHHHHHHh--hCCCCCchhHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1060 R--RLPRRLMVNLPDAPNRAKILQVILA--KEDLSPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEILEKEKKER 1133 (1203)
Q Consensus 1060 r--RFd~~I~v~~Pd~eeR~eIL~~~l~--~~~l~~d~dl~~LA~~T~--G~Sg~DL~~L~~~Aa~~airel~~~~~~~~ 1133 (1203)
| ||+..++|++|+.++|..||+.+.+ +..+..++|+++||+.+. ||+|+||..||++|+..++++.+......
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~- 744 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS- 744 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc-
Confidence 9 9999999999999999999999998 677889999999999877 99999999999999999999866532210
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcc
Q 000978 1134 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1194 (1203)
Q Consensus 1134 ~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~R 1194 (1203)
...-... .....+++.||++|+++++||+.... ..-|...+..+|+....
T Consensus 745 -------~~~~~~~--~~~~~~t~~hF~eA~~~i~pSv~~~d--r~~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 745 -------EDDVTVR--SSTIIVTYKHFEEAFQRIRPSVSERD--RKKYDRLNKSRSLSTAT 794 (802)
T ss_pred -------Cccccee--eeeeeecHHHHHHHHHhcCCCccHHH--HHHHHHHhhhhcccccC
Confidence 0000000 01235899999999999999998774 34466666777754443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-60 Score=557.64 Aligned_cols=479 Identities=30% Similarity=0.497 Sum_probs=397.5
Q ss_pred hHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCCchhhHhhh
Q 000978 403 NTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELL 482 (1203)
Q Consensus 403 ~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~~~~~~e~~ 482 (1203)
.--..+.+.+..+|.++...+.. =...++++||+|||| ++++||++|.|++.+|.|+.+....+...
T Consensus 191 ~~~~~i~e~v~~pl~~~~~~~s~--g~~~prg~Ll~gppg--~Gkt~l~~aVa~e~~a~~~~i~~peli~k--------- 257 (693)
T KOG0730|consen 191 RQLSVIRELVELPLRHPALFKSI--GIKPPRGLLLYGPPG--TGKTFLVRAVANEYGAFLFLINGPELISK--------- 257 (693)
T ss_pred HHHHHHHHHHHhhhcchhhhhhc--CCCCCCCccccCCCC--CChHHHHHHHHHHhCceeEecccHHHHHh---------
Confidence 34456788899999998875332 246788999999999 99999999999999999999987544330
Q ss_pred hcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccCCeeeEecC
Q 000978 483 KDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGS 562 (1203)
Q Consensus 483 ~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~ 562 (1203)
|-|
T Consensus 258 ----------------------------------------------------------------------------~~g- 260 (693)
T KOG0730|consen 258 ----------------------------------------------------------------------------FPG- 260 (693)
T ss_pred ----------------------------------------------------------------------------ccc-
Confidence 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccccccCCCcchhHHHH
Q 000978 563 TSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLL 642 (1203)
Q Consensus 563 ~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~ 642 (1203)
| .+..
T Consensus 261 -------------------------------------------------------------------------E--te~~ 265 (693)
T KOG0730|consen 261 -------------------------------------------------------------------------E--TESN 265 (693)
T ss_pred -------------------------------------------------------------------------c--hHHH
Confidence 1 2224
Q ss_pred HHHHHHHHhhhccCC-CeEEEEcchhhhhcCCcch---hhhHHHHH----hcC--CCcEEEEeeeccCCCccccCCCCCc
Q 000978 643 INTLFEVVFSESRSC-PFILFMKDAEKSIAGNSDS---YSTFKSRL----EKL--PDKVIVIGSHTHTDNRKEKSHPGGL 712 (1203)
Q Consensus 643 i~~L~ev~~~~~~~~-p~Ilfiddi~~~l~~~~~~---~~~lk~~L----~~l--~g~V~vIGst~~~d~~~~~~~~~~~ 712 (1203)
++..|+.+.+ .+ |.||||||+|.+..++... -..+.+.| +-+ .++|+||+++++++..+|+
T Consensus 266 LR~~f~~a~k---~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~a------ 336 (693)
T KOG0730|consen 266 LRKAFAEALK---FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA------ 336 (693)
T ss_pred HHHHHHHHhc---cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChh------
Confidence 7778888877 77 9999999999987633222 33344444 223 4799999999999998888
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhH
Q 000978 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1203)
Q Consensus 713 ~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l 792 (1203)
||| || |++.++|..|+..+|++|++.+.++ +....+..+.
T Consensus 337 -lRR-gR----------------------------------fd~ev~IgiP~~~~RldIl~~l~k~----~~~~~~~~l~ 376 (693)
T KOG0730|consen 337 -LRR-GR----------------------------------FDREVEIGIPGSDGRLDILRVLTKK----MNLLSDVDLE 376 (693)
T ss_pred -hhc-CC----------------------------------CcceeeecCCCchhHHHHHHHHHHh----cCCcchhhHH
Confidence 888 88 9999999999999999999988855 3344567788
Q ss_pred HHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhc
Q 000978 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKS 872 (1203)
Q Consensus 793 ~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~ 872 (1203)
..+-.++||.|+||..+|.++.+-.... +.++|..++.- +++
T Consensus 377 ~iA~~thGyvGaDL~~l~~ea~~~~~r~---------------------------~~~~~~~A~~~---i~p-------- 418 (693)
T KOG0730|consen 377 DIAVSTHGYVGADLAALCREASLQATRR---------------------------TLEIFQEALMG---IRP-------- 418 (693)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHhhh---------------------------hHHHHHHHHhc---CCc--------
Confidence 8889999999999999998664411110 22233332221 111
Q ss_pred ccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHH
Q 000978 873 LKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTML 952 (1203)
Q Consensus 873 ~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~L 952 (1203)
.. +..-+ .+.+.++|+||||++++|..|++.|.+|+++|+.|.+.++ .|++|||||||||||||++
T Consensus 419 -------sa----~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 419 -------SA----LREIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred -------hh----hhhee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHH
Confidence 00 11111 3445799999999999999999999999999999999885 4569999999999999999
Q ss_pred HHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhc
Q 000978 953 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1203)
Q Consensus 953 ArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ld 1032 (1203)
|+|+|++.+++|+.+.+++++++|+|++|+.++.+|+.|+..+|+|||+||||.+.+.|+... ..+..+++++||++||
T Consensus 485 AkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 485 AKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMD 563 (693)
T ss_pred HHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999997433 3788999999999999
Q ss_pred CCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHH
Q 000978 1033 GLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1110 (1203)
Q Consensus 1033 gl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL 1110 (1203)
|+.. ..+|+|||+||+|+.||++++| |||+.|+|++|+.+.|.+||+.++++..+.+++|+++||..|+||||+||
T Consensus 564 G~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel 641 (693)
T KOG0730|consen 564 GLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEI 641 (693)
T ss_pred cccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHH
Confidence 9865 4789999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1111 KNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1111 ~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
.++|++|+..++++.++ ...++.+||++|++.+++++...
T Consensus 642 ~~lCq~A~~~a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 642 VAVCQEAALLALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHHHHHHHHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 99999999999997543 24699999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-55 Score=486.69 Aligned_cols=380 Identities=59% Similarity=0.929 Sum_probs=348.9
Q ss_pred hhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhccc-ccCCHHHHHHHHh
Q 000978 809 LCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLK-DVVTENEFEKRLL 887 (1203)
Q Consensus 809 Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~~k-~~v~~~e~e~~ll 887 (1203)
.|..+..+..+.++.++.+|++||+.+...+.-+....+..+++.++...++..... .+.+ ..+..++++..+.
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~ 78 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDPNLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIA 78 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccChhhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhh
Confidence 566677778889999999999999998887775558889999999887766654332 2223 4788999999999
Q ss_pred cCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 888 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 888 ~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.++++|.++.++|+||+|++.++++|++.|++|+++|++|..+++.+|++|||||||||||||++|+|+|+++|++|+.+
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEe
Q 000978 968 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1203)
Q Consensus 968 ~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaT 1047 (1203)
.++.+.++|+|+.+++++.+|..|.+.+|+||||||||.+++.| ...+|++...+.++||..|||+.++.+.+|+|+|+
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999 78999999999999999999999998889999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 000978 1048 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1203)
Q Consensus 1048 TN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~ 1127 (1203)
||+|.+||++++||++++++|++|+.++|.+||+.+++.+.+.+++|+.++|.+|+||||+||+++|..|++.++|+++.
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH--HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcc
Q 000978 1128 KE--KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1194 (1203)
Q Consensus 1128 ~~--~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~R 1194 (1203)
.+ ..++.....+..+.++...+...|+++++||..|+.+|.+++..+...|....+|++.||++++|
T Consensus 318 ~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 318 SETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred hcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 86 33444445556666655556678999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.2e-52 Score=522.75 Aligned_cols=539 Identities=28% Similarity=0.452 Sum_probs=415.4
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
-+++|+++..+ +..+..|.+.+..+|+|+++.+... ...++.|||+||+| +++++||||||++.+++++.++..
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--IEPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEecH
Confidence 46899998877 9999999999999999998764221 24567899999999 999999999999999998877753
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000978 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1203)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1203)
.+.+
T Consensus 247 ~i~~---------------------------------------------------------------------------- 250 (733)
T TIGR01243 247 EIMS---------------------------------------------------------------------------- 250 (733)
T ss_pred HHhc----------------------------------------------------------------------------
Confidence 3322
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 000978 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1203)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1203)
+|+
T Consensus 251 ---------~~~-------------------------------------------------------------------- 253 (733)
T TIGR01243 251 ---------KYY-------------------------------------------------------------------- 253 (733)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcc--------hhhhHHHHHhcC--CCcEEEEeeec
Q 000978 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--------SYSTFKSRLEKL--PDKVIVIGSHT 698 (1203)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~--------~~~~lk~~L~~l--~g~V~vIGst~ 698 (1203)
++ ....++.+|+.+.. ..|.||||||||.+...+.. +.+.|-..|+.+ .+.|+|||+||
T Consensus 254 ------g~--~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 254 ------GE--SEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred ------cH--HHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence 11 22347778888777 88999999999998753221 122233333332 46899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 699 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 699 ~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+++..|++ |+|+|| |...++|.+|+.++|.+||+.++..
T Consensus 323 ~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 323 RPDALDPA-------LRRPGR----------------------------------FDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred ChhhcCHH-------HhCchh----------------------------------ccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 99887777 777777 8889999999999999999976543
Q ss_pred hhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCC-C----C---ccccccccch
Q 000978 779 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPE-A----D---PDARLVLSCE 850 (1203)
Q Consensus 779 ~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~-p----~---~~~kl~ls~~ 850 (1203)
.....+.+....+-.+.||.++||..+|..+... ++.+.+..... . . ......++.+
T Consensus 362 ----~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~-----------al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~ 426 (733)
T TIGR01243 362 ----MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA-----------ALRRFIREGKINFEAEEIPAEVLKELKVTMK 426 (733)
T ss_pred ----CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH-----------HHHHHhhccccccccccccchhcccccccHH
Confidence 3333455555666778899999999888765432 22222221110 0 0 0122334445
Q ss_pred hhhhhhhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcC
Q 000978 851 SIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKG 930 (1203)
Q Consensus 851 ~l~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~ 930 (1203)
+|..++...+ +.. . ..... ..+.++|++++|++.+++.|++.+.+++.+++.|.+.
T Consensus 427 df~~Al~~v~---ps~---------------~----~~~~~--~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~ 482 (733)
T TIGR01243 427 DFMEALKMVE---PSA---------------I----REVLV--EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM 482 (733)
T ss_pred HHHHHHhhcc---ccc---------------c----chhhc--cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 5544433211 100 0 00001 1235789999999999999999999999999999887
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 931 QLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 931 ~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
+. ++++++|||||||||||++|+++|++++.+|+.+.++++.++|+|+.+..++.+|..|+...|+||||||||.|++.
T Consensus 483 g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~ 561 (733)
T TIGR01243 483 GI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561 (733)
T ss_pred CC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhcc
Confidence 75 45589999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1011 r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
+..........+++++|+..++++.. ..+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++.+..
T Consensus 562 r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 562 RGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred CCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 76554555678899999999999754 4689999999999999999998 9999999999999999999999998888
Q ss_pred CCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1089 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1089 l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
+..++++..||+.|+||+|+||.++|++|+..++++.+.....+.... .. ........|+++||.+|+++++
T Consensus 640 ~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~---~~-----~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV---GE-----EEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc---cc-----ccccccCcccHHHHHHHHHHcC
Confidence 888899999999999999999999999999999998654322111000 00 0011235799999999999999
Q ss_pred ccccccccchhhhHHHHHHhcC
Q 000978 1169 ASVSSESVNMSELLQWNELYGE 1190 (1203)
Q Consensus 1169 pS~s~e~~~~~~~v~W~di~G~ 1190 (1203)
||+..+ .+..+.+|...+|.
T Consensus 712 ps~~~~--~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 712 PSVSKE--DMLRYERLAKELKR 731 (733)
T ss_pred CCCCHH--HHHHHHHHHHHhcc
Confidence 999877 35679999998863
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-49 Score=466.88 Aligned_cols=444 Identities=29% Similarity=0.454 Sum_probs=342.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcCCc-----chhhhHHHHHh----c-CCCcEEEEeeeccCCCccccCCCCCc
Q 000978 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSYSTFKSRLE----K-LPDKVIVIGSHTHTDNRKEKSHPGGL 712 (1203)
Q Consensus 643 i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~-----~~~~~lk~~L~----~-l~g~V~vIGst~~~d~~~~~~~~~~~ 712 (1203)
+.+.|+-+.. .+|+||||.+.|-+...+. +....+.-.|. + -.+++++||+++..++.
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~l--------- 546 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDL--------- 546 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccC---------
Confidence 4445555555 7899999999987553111 11122222222 2 23689999999988752
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhH
Q 000978 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1203)
Q Consensus 713 ~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l 792 (1203)
-..+...|...|.|+.|++++|++||+..+.. +....+++.-
T Consensus 547 ----------------------------------p~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k 588 (953)
T KOG0736|consen 547 ----------------------------------PADIQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLK 588 (953)
T ss_pred ----------------------------------CHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHH
Confidence 23466678899999999999999999966533 4455566666
Q ss_pred HHHhhccCCCcccccchhccccccchHHHHHHHHHHH-hhhhhcCCCCC-ccccccccchhhhhhhhHHHHHHHhhHhhh
Q 000978 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWAL-SHHLMQNPEAD-PDARLVLSCESIQYGIGIFQAIQNESKSLK 870 (1203)
Q Consensus 793 ~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~-s~~l~~~~~p~-~~~kl~ls~~~l~~al~~lq~i~~~~k~~k 870 (1203)
..+..+.|++-.||+.+.... +-+ +...|..+- ...+....+.. ......++.++|..++..+|.
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~---s~~-~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~--------- 655 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHS---SLA-AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQK--------- 655 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCc---hHH-HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHH---------
Confidence 778889999999998876544 222 222222222 11111111111 113345677777766664432
Q ss_pred hcccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHH
Q 000978 871 KSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKT 950 (1203)
Q Consensus 871 ~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT 950 (1203)
+|. ..+-.|..+.++|+||||++++|..+.+.|..|+++|++|..+- ++..|||||||||||||
T Consensus 656 ----------~fs----~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssgl--rkRSGILLYGPPGTGKT 719 (953)
T KOG0736|consen 656 ----------EFS----DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGL--RKRSGILLYGPPGTGKT 719 (953)
T ss_pred ----------hhh----hhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccc--cccceeEEECCCCCchH
Confidence 122 22334555689999999999999999999999999999998653 44469999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch-hHHHHHHHHHHHH
Q 000978 951 MLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMV 1029 (1203)
Q Consensus 951 ~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~al~~il~eLL~ 1029 (1203)
.+|||+|.++..+|+.+..++|+++|+|++|++++.+|+.|+..+|||||+||+|.+.+.|+..++ ...+.+++.+||.
T Consensus 720 LlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA 799 (953)
T KOG0736|consen 720 LLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA 799 (953)
T ss_pred HHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987654 4578999999999
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCC-CHHHHHHHHHHHHhhCCCCCchhHHHHHHHcC-CC
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLP-DAPNRAKILQVILAKEDLSPDVDFDAIANMTD-GY 1105 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~P-d~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~-G~ 1105 (1203)
++|++.......|+||++||+|+.|||+++| |||+.++++++ +.+.+..+|+.+.++..++.++++.+||+.+. .|
T Consensus 800 ELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~ 879 (953)
T KOG0736|consen 800 ELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNM 879 (953)
T ss_pred HhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCC
Confidence 9999987677899999999999999999999 99999999887 57788999999999999999999999999986 79
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1106 SGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1106 Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
+|+|+..||..|++.|++|.+....... . +......+...|+|+||.+|.++++||++..
T Consensus 880 TGADlYsLCSdA~l~AikR~i~~ie~g~--------~-~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 880 TGADLYSLCSDAMLAAIKRTIHDIESGT--------I-SEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcc--------c-cccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 9999999999999999999766543321 0 1111223446799999999999999999866
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-45 Score=404.07 Aligned_cols=284 Identities=40% Similarity=0.712 Sum_probs=256.6
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
..+.+.|+||.|+++.|+-|++.|.+|+..|+.|. ++.+|.++||++||||||||+||+|+|.+.+..|+.|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34569999999999999999999999999999996 5689999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccC--CccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~--~~~VlVIaTTN~p 1051 (1203)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|+..++|++.+++..+||++|||+.... ...|+|+|+||.|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999986542 2458999999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1052 ~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
|+||++++|||..+|+|++|+.+.|..+|+..+....+.++++++.||..++||||+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654432
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcC
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1190 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~ 1190 (1203)
......+. .... .|++++||++|+.+++||++.. .+.-+.+|.+.||.
T Consensus 443 ~ei~~lak--------E~~~-~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAK--------EEPK-MPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhh--------hccc-cccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 21111110 1112 6899999999999999999855 46779999999996
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=426.53 Aligned_cols=454 Identities=32% Similarity=0.478 Sum_probs=359.8
Q ss_pred eeeccCCCCCCCCCCC--CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcc
Q 000978 598 GVRFDKPIPDGVDLGG--QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD 675 (1203)
Q Consensus 598 gV~Fd~~~~~~~~l~~--~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~ 675 (1203)
||.+++|+++|+++.+ .+.....|+...+..++++|+++ .+..+..+|+-+.. ..|.|+|+||++.+......
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGE--SELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhH--HHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 7899999999999431 11115455888999999999999 88888999998888 88899999999998873333
Q ss_pred ----hhhhHHHHH----hcC-CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHH
Q 000978 676 ----SYSTFKSRL----EKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKA 746 (1203)
Q Consensus 676 ----~~~~lk~~L----~~l-~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~ 746 (1203)
....+...| ..+ .+.|++||++++.+..+++ ++||||
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a-------~~~~~~--------------------------- 140 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPA-------KRRPGR--------------------------- 140 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecCCccccChh-------HhCccc---------------------------
Confidence 222233333 111 4569999999999887777 888888
Q ss_pred HHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHH
Q 000978 747 TKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVG 826 (1203)
Q Consensus 747 d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~ 826 (1203)
|...+++.+|+.+.+++|++.+...+.. ..+......+..+.++.++|+..+|.++...
T Consensus 141 -------~~~~~~~~~~~~~~~~ei~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~---------- 199 (494)
T COG0464 141 -------FDREIEVNLPDEAGRLEILQIHTRLMFL----GPPGTGKTLAARTVGKSGADLGALAKEAALR---------- 199 (494)
T ss_pred -------cceeeecCCCCHHHHHHHHHHHHhcCCC----cccccHHHHHHhcCCccHHHHHHHHHHHHHH----------
Confidence 8889999999999999999987644222 2245555566777889999988887643321
Q ss_pred HHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCccccccccc
Q 000978 827 WALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGAL 906 (1203)
Q Consensus 827 ~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gl 906 (1203)
+..+.+ ........++.+++..++..+ ... ..+......++|.+++|+
T Consensus 200 -~~~r~~-----~~~~~~~~~~~~~~~~~l~~~-----------------~~~---------~~~~~~~~~v~~~diggl 247 (494)
T COG0464 200 -ELRRAI-----DLVGEYIGVTEDDFEEALKKV-----------------LPS---------RGVLFEDEDVTLDDIGGL 247 (494)
T ss_pred -HHHhhh-----ccCcccccccHHHHHHHHHhc-----------------Ccc---------cccccCCCCcceehhhcH
Confidence 111111 001112222222222222100 000 122334567899999999
Q ss_pred HHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHH
Q 000978 907 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKA 986 (1203)
Q Consensus 907 e~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~ 986 (1203)
+.+++.+++.+.+++.+++.|.+.+ .+++.++|||||||||||+||+++|++++.+|+.+..++++++|+|+++++++.
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~ 326 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRE 326 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHH
Confidence 9999999999999999999988644 456689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccc
Q 000978 987 VFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPR 1064 (1203)
Q Consensus 987 lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~ 1064 (1203)
+|..|++.+||||||||||.|+..+..... ....+++++|+..|+++.. ..+|+||++||+++.+|++++| ||+.
T Consensus 327 ~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gRfd~ 403 (494)
T COG0464 327 LFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGRFDR 403 (494)
T ss_pred HHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCccce
Confidence 999999999999999999999988864332 2337899999999999855 4679999999999999999999 9999
Q ss_pred cccCCCCCHHHHHHHHHHHHhhCCC--CCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000978 1065 RLMVNLPDAPNRAKILQVILAKEDL--SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKP 1142 (1203)
Q Consensus 1065 ~I~v~~Pd~eeR~eIL~~~l~~~~l--~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~ 1142 (1203)
.|+|++|+.++|.+||+.++..... ..++++..+++.++||+++||..+|++|++.++++..
T Consensus 404 ~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~---------------- 467 (494)
T COG0464 404 LIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR---------------- 467 (494)
T ss_pred EeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc----------------
Confidence 9999999999999999999985543 4789999999999999999999999999999888642
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1143 APALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1143 ~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
...++++||.+|++++.|++.
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCCCC
Confidence 257999999999999999965
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-44 Score=395.16 Aligned_cols=247 Identities=40% Similarity=0.699 Sum_probs=231.0
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++++||||+++++++|++.|.+|+.+|++|.+.++ .||+|||||||||||||+||+|+|++.++.|+++..++|+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45799999999999999999999999999999999986 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|+....++.+|..|+.++||||||||||.+.++|.+. +......+++-+||.+|||+.. .++|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988754 3445567788889999999965 58899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.|||+++| |||+.|+|++|+.+.|.+||+.+.+++.+..++|++.||+.++|+||+||+++|.+|.+.|+|+
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~------ 375 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE------ 375 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
....+||+||.+|.++|...
T Consensus 376 --------------------~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 --------------------RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred --------------------ccCeecHHHHHHHHHHHHhc
Confidence 23579999999999998654
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-43 Score=404.71 Aligned_cols=299 Identities=33% Similarity=0.576 Sum_probs=262.4
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
...++|.+|||++....+|.+++.. +.+|+.|...++ .|++|||||||||||||+||+|||.+++.||+.|+..++++
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 3467999999999999999999988 999999998885 57799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccC--CccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~--~~~VlVIaTTN~p~ 1052 (1203)
.+.|++|+.++.+|+.|+...|||+||||||.+.++|.+ ...+..++++.+|+..||++.... +.+|+||++||+|+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999876 556777899999999999987653 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++|+| ||++.|.++.|+..+|.+||+.++++..+..++++..||+.|.||.|+||.+||.+|+..+++|++....
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999987443
Q ss_pred H--HHHH---------H-Hhc---C---------------------CCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1131 K--ERAA---------A-MAE---G---------------------KPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1131 ~--~~~~---------a-~~e---~---------------------~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
. .... . .++ . .+.+........-.|.++||.+|+..|+||..++
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 1 0000 0 000 0 0000000112234588999999999999999999
Q ss_pred ccchhhhHHHHHHhcCCCcccc
Q 000978 1175 SVNMSELLQWNELYGEGGSRRK 1196 (1203)
Q Consensus 1175 ~~~~~~~v~W~di~G~~g~Rk~ 1196 (1203)
.....|.+.|+||||+..+|.+
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred cceecCCCChhhcccHHHHHHH
Confidence 9999999999999999998865
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-41 Score=392.34 Aligned_cols=398 Identities=27% Similarity=0.445 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchh-hhHHHHH-------hcCCCcEEEEeeeccCCCccc
Q 000978 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSY-STFKSRL-------EKLPDKVIVIGSHTHTDNRKE 705 (1203)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~------~~~~~~-~~lk~~L-------~~l~g~V~vIGst~~~d~~~~ 705 (1203)
+..++..|..... .+|.||++||+|-+++ ++...+ +.+-..| .+.+..|.+|++-.......|
T Consensus 480 Qk~l~~vfse~~~---~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 480 QKFLNNVFSEALW---YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHh---hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 3456666666666 9999999999999997 121111 1111112 333456788988765543211
Q ss_pred cCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhc
Q 000978 706 KSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKM 785 (1203)
Q Consensus 706 ~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~ 785 (1203)
- |-- ..+|..++.++.|+.++|.+||.....+-.- ...
T Consensus 557 ~-------L~s----------------------------------~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-~~~ 594 (952)
T KOG0735|consen 557 L-------LVS----------------------------------PLLFQIVIALPAPAVTRRKEILTTIFSKNLS-DIT 594 (952)
T ss_pred h-------hcC----------------------------------ccceEEEEecCCcchhHHHHHHHHHHHhhhh-hhh
Confidence 1 111 1258788888999999999999865543111 111
Q ss_pred cCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHh
Q 000978 786 KGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNE 865 (1203)
Q Consensus 786 ~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~ 865 (1203)
..+++. ....|-||...||.-+ ++.++-.|. + +-+.+....++.++|..++..+-...
T Consensus 595 ~~dLd~--ls~~TEGy~~~DL~if-----------VeRai~~a~---l----eris~~~klltke~f~ksL~~F~P~a-- 652 (952)
T KOG0735|consen 595 MDDLDF--LSVKTEGYLATDLVIF-----------VERAIHEAF---L----ERISNGPKLLTKELFEKSLKDFVPLA-- 652 (952)
T ss_pred hHHHHH--HHHhcCCccchhHHHH-----------HHHHHHHHH---H----HHhccCcccchHHHHHHHHHhcChHH--
Confidence 223333 5667788888888332 333433333 1 11122223778888887776543220
Q ss_pred hHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCC
Q 000978 866 SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 945 (1203)
Q Consensus 866 ~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPP 945 (1203)
+.++---...++.|+|++|+.++++.|++.+++|.++|..|.+..+.-+ .||||||||
T Consensus 653 ---------------------LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGpp 710 (952)
T KOG0735|consen 653 ---------------------LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPP 710 (952)
T ss_pred ---------------------hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCC
Confidence 1111111223478999999999999999999999999999998765444 799999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHH
Q 000978 946 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN 1025 (1203)
Q Consensus 946 GTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~ 1025 (1203)
|||||+||.++|...++.|+.+..+++.++|+|.+|+.++.+|..|+..+|||||+||+|.+.++|+.... ....++++
T Consensus 711 GcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT-GVTDRVVN 789 (952)
T KOG0735|consen 711 GCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST-GVTDRVVN 789 (952)
T ss_pred CCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC-CchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875433 34578999
Q ss_pred HHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcC
Q 000978 1026 EFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTD 1103 (1203)
Q Consensus 1026 eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~ 1103 (1203)
+||++|||... -..|.|+|+|.+|+.+||+++| |+|+.++.+.|+..+|.+|++.+........++|++.+|.+|+
T Consensus 790 QlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~ 867 (952)
T KOG0735|consen 790 QLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTD 867 (952)
T ss_pred HHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcC
Confidence 99999999865 3679999999999999999999 9999999999999999999999998888889999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1104 GYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1104 G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
||+|+||..|+..|.+.++++++...
T Consensus 868 g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 868 GFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999877543
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-40 Score=355.27 Aligned_cols=296 Identities=38% Similarity=0.664 Sum_probs=252.8
Q ss_pred CCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 891 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 891 i~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
|-...+.+.|+|+.|++..|+.|++.|++|++.|.+|... ++|.++|||||||||||++||+|+|.+.+..|+.++.+
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 4445678999999999999999999999999999999743 67899999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 971 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 971 eL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
+|+++|.|++|+.++++|++|+.+.|+||||||||.+++.|. ..+.++.+++..+||++|.|... +...|+|+++||-
T Consensus 201 DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgATNi 278 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGATNI 278 (439)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhcccc-CCCceEEEecCCC
Confidence 999999999999999999999999999999999999988774 56778899999999999999864 5689999999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCC-CCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL-SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l-~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
||.||.+++|||..+|++++|+...|..+|+.++..... ..+.|+.+|+++|+||+|+||.-+++.|.+.++|++....
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAt 358 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSAT 358 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhh
Confidence 999999999999999999999999999999999876542 3678999999999999999999999999999999875544
Q ss_pred HHHHHHH--Hh---cCCCCCCCCCC---------------CCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhc
Q 000978 1130 KKERAAA--MA---EGKPAPALSGC---------------ADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 1189 (1203)
Q Consensus 1130 ~~~~~~a--~~---e~~~~~~~~~~---------------~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G 1189 (1203)
...+.-. .. .....|+.-+. .--.+|||.||..++...+|.+..+. ..-..+|.+-+|
T Consensus 359 hFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~D--l~k~~~Ft~dFG 436 (439)
T KOG0739|consen 359 HFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDD--LLKHEKFTEDFG 436 (439)
T ss_pred hhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhhc
Confidence 3321100 00 00011111110 11247999999999999999998774 456889999999
Q ss_pred CCC
Q 000978 1190 EGG 1192 (1203)
Q Consensus 1190 ~~g 1192 (1203)
.+|
T Consensus 437 qEg 439 (439)
T KOG0739|consen 437 QEG 439 (439)
T ss_pred cCC
Confidence 876
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=356.58 Aligned_cols=427 Identities=20% Similarity=0.229 Sum_probs=320.6
Q ss_pred eeeccCCCCCCCCCC--------CCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhcc-----CCCeEEEEc
Q 000978 598 GVRFDKPIPDGVDLG--------GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-----SCPFILFMK 664 (1203)
Q Consensus 598 gV~Fd~~~~~~~~l~--------~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~-----~~p~Ilfid 664 (1203)
|++.-+||||||||- |--+.-+ --|--.|+|+||+ .+.-|+.||.=+.++-+ .+=-||.||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KYVGe--SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKYVGE--SEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHhhcc--cHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 677788999999943 3233221 1467789999999 89999999999876644 334599999
Q ss_pred chhhhhc------CCcchhhhHHHHH-hcCCC-----cEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCc
Q 000978 665 DAEKSIA------GNSDSYSTFKSRL-EKLPD-----KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDS 732 (1203)
Q Consensus 665 di~~~l~------~~~~~~~~lk~~L-~~l~g-----~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~ 732 (1203)
|||.+.. |+...++.+...| .+.+| ||+|||+|||.|-+||| |-||||
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEA-------LLRPGR------------- 391 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEA-------LLRPGR------------- 391 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHH-------hcCCCc-------------
Confidence 9998763 6678888888877 45555 99999999999988888 888888
Q ss_pred cccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcc
Q 000978 733 FGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 812 (1203)
Q Consensus 733 ~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~ 812 (1203)
|+.+++|.|||+++|++||++|+.+|+++-.+..|++.-+.+..+++|+|++|+.+..
T Consensus 392 ---------------------lEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk- 449 (744)
T KOG0741|consen 392 ---------------------LEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK- 449 (744)
T ss_pred ---------------------eEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH-
Confidence 8899999999999999999999999999999999999999999999999999876633
Q ss_pred ccccchHHHHHHHHHHHhhhhhcCC----CCCccccccccchhhhhhhhHHHHHHHhhHhhhhcccccCCHHHHHHHHhc
Q 000978 813 DQSLTNESAEKIVGWALSHHLMQNP----EADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLA 888 (1203)
Q Consensus 813 d~~ls~~~Ie~iV~~A~s~~l~~~~----~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~ 888 (1203)
.+...|++|++.... +|....++.++++||.+++..++..+. +++++++..+..
T Consensus 450 ----------sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG------------~see~l~~~~~~ 507 (744)
T KOG0741|consen 450 ----------SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG------------ISEEDLERFVMN 507 (744)
T ss_pred ----------HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC------------CCHHHHHHHHhC
Confidence 445567777776552 333557889999999999985554433 678899998888
Q ss_pred CcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 889 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 889 ~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
+++.+... ...+.+.-..++.. .+.+ -..+..++||+||||+|||+||..+|...++||+++-
T Consensus 508 Gmi~~g~~---------v~~il~~G~llv~q-vk~s-------~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii 570 (744)
T KOG0741|consen 508 GMINWGPP---------VTRILDDGKLLVQQ-VKNS-------ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII 570 (744)
T ss_pred Cceeeccc---------HHHHHhhHHHHHHH-hhcc-------ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe
Confidence 88887642 12333333333332 2222 2456688999999999999999999999999999976
Q ss_pred ccc-cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEe
Q 000978 969 MSS-ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1203)
Q Consensus 969 ~se-L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaT 1047 (1203)
.++ +++........+++.+|+.|++++-+||++|+|++|+.. -+....+.+.+++.|+..+...+++ +.+++|++|
T Consensus 571 Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--vpIGPRfSN~vlQaL~VllK~~ppk-g~kLli~~T 647 (744)
T KOG0741|consen 571 SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--VPIGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGT 647 (744)
T ss_pred ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--cccCchhhHHHHHHHHHHhccCCCC-CceEEEEec
Confidence 554 444333344568899999999999999999999999733 3455677889999999999988765 578999999
Q ss_pred cCCCCCCcH-HHHhcccccccCCCCCH-HHHHHHHHHHHhhCCCCCchhHHHHHHHcC----CCcHHHHHHHHHHHH
Q 000978 1048 TNRPFDLDE-AVIRRLPRRLMVNLPDA-PNRAKILQVILAKEDLSPDVDFDAIANMTD----GYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1048 TN~p~~Ld~-aLlrRFd~~I~v~~Pd~-eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~----G~Sg~DL~~L~~~Aa 1118 (1203)
|++...|.+ .++..|+..++|+..+. ++..+++... +...+.+...++.... +.-...|..|+.+|.
T Consensus 648 TS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 648 TSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred ccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 998777665 66779998998876654 5666665543 3233333333333222 222345555555554
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9e-36 Score=355.39 Aligned_cols=411 Identities=20% Similarity=0.353 Sum_probs=298.2
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHH---HhcCCCcEEEEeeeccCCCccccCCCCCccccccC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR---LEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~---L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~g 718 (1203)
.+++|- .+......+|.|+.++|+|.++. +......|+.. +...+..++|++.....
T Consensus 67 p~~al~-~i~~~~~~~~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~~------------------ 126 (489)
T CHL00195 67 PLQALE-FIEKLTPETPALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASELNI------------------ 126 (489)
T ss_pred HHHHHH-HHHhcCCCCCcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCCCCC------------------
Confidence 456663 44444445689999999999883 33333333332 23345677777764322
Q ss_pred CchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhc
Q 000978 719 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGR 798 (1203)
Q Consensus 719 r~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t 798 (1203)
|.. |.+.+ ..++++||+.++...+++..... . .
T Consensus 127 -----------p~e-----------------l~~~~-~~~~~~lP~~~ei~~~l~~~~~~----~--------------~ 159 (489)
T CHL00195 127 -----------PKE-----------------LKDLI-TVLEFPLPTESEIKKELTRLIKS----L--------------N 159 (489)
T ss_pred -----------CHH-----------------HHhce-eEEeecCcCHHHHHHHHHHHHHh----c--------------C
Confidence 222 33334 68899999999999988644321 0 0
Q ss_pred cCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhcccccCC
Q 000978 799 SGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVT 878 (1203)
Q Consensus 799 ~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~~k~~v~ 878 (1203)
..++..+++.++....-++...++.++..++..+ -.++.+++...+. +.++. +.
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~-------~k~q~-------~~ 213 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATY------------KTIDENSIPLILE-------EKKQI-------IS 213 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc------------CCCChhhHHHHHH-------HHHHH-------Hh
Confidence 1234445555655566666666666655443211 0122222222111 11100 00
Q ss_pred HHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000978 879 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 879 ~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~ 958 (1203)
. ..++.......+|++++|++.+|+.+++..... .......++ .++++|||+||||||||++|+++|+
T Consensus 214 ~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 214 Q--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred h--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHH
Confidence 0 112222334678999999999999998765321 122233343 4569999999999999999999999
Q ss_pred HhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccC
Q 000978 959 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1038 (1203)
Q Consensus 959 eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~ 1038 (1203)
+++.+|+.++++.+.++++|+++..++++|..|+..+||||||||||.++..+...+......+++.+|+..++..
T Consensus 282 e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 282 DWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred HhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999999999999999999999999999999876554455566788899998888752
Q ss_pred CccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC--CchhHHHHHHHcCCCcHHHHHHHH
Q 000978 1039 TERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS--PDVDFDAIANMTDGYSGSDLKNLC 1114 (1203)
Q Consensus 1039 ~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~--~d~dl~~LA~~T~G~Sg~DL~~L~ 1114 (1203)
..+++||||||.++.||++++| ||+..|+|+.|+.++|.+||+.++.+.... .+.++..||+.|+||+|+||.++|
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 4679999999999999999998 999999999999999999999999886432 478899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHh
Q 000978 1115 VTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 1188 (1203)
Q Consensus 1115 ~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~ 1188 (1203)
.+|+..++.+ .++++.+||..|++++.|......-....+++|...+
T Consensus 438 ~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 438 IEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 9998776542 2579999999999999998765544567889998754
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-37 Score=352.16 Aligned_cols=270 Identities=37% Similarity=0.593 Sum_probs=241.8
Q ss_pred CCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000978 892 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1203)
Q Consensus 892 ~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se 971 (1203)
+.....++|+|+-|.++.|++|++.|.. ++.|+.|.+.+..- |+||||+||||||||+||||+|.+.+.||+....++
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKL-PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKL-PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcC-CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 3334478999999999999999999985 89999999877544 499999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
+-..++|...+.++.+|..|++.+||||||||||.+.++|.....+ ..++.+++||..|||+.. +..|+||++||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q--NeGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc--CCceEEEeccCCh
Confidence 9999999999999999999999999999999999999988655444 889999999999999965 5789999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.||+++.| |||++|.|+.||...|.+||+.++.+..+..++|+..||+-|.||+|+||.+|++.|+..|...
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d----- 524 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD----- 524 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-----
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999876542
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1192 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g 1192 (1203)
....|+|.|++.|.+++.....+......+.-+-.-.|.++|
T Consensus 525 ---------------------ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~G 566 (752)
T KOG0734|consen 525 ---------------------GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGG 566 (752)
T ss_pred ---------------------CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccC
Confidence 124699999999999998887777665556666666677665
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=338.31 Aligned_cols=280 Identities=46% Similarity=0.798 Sum_probs=252.3
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
...+.|+|+.|++.+++.+.+.+.+|+.++++|. ++..|++++||+||||+|||+|++|||.+.++.|..++++.|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 3468899999999999999999999999999997 45678899999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1054 (1203)
+|+|+.++.++.+|..|+..+|+||||||||.++.+| .+..++..+++..+++..+++.......+|+||+|||+|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999998 667788889999999999999988888899999999999999
Q ss_pred cHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC-CCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1133 (1203)
Q Consensus 1055 d~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~-l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~ 1133 (1203)
|++++|||..++++++|+.+.|..+|+.++.+.+ ...+.+++.|+++|+||++.||.++|..|++..++++......+
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~- 382 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE- 382 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh-
Confidence 9999999999999999999999999999998873 33678899999999999999999999999999988764421100
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000978 1134 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1192 (1203)
Q Consensus 1134 ~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g 1192 (1203)
.......|+++..||+.|++.+.++++.+.. .-+.+|+..+|...
T Consensus 383 ------------~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l--~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 ------------FIDADKIRPITYPDFKNAFKNIKPSVSLEGL--EKYEKWDKEFGSSE 427 (428)
T ss_pred ------------hcchhccCCCCcchHHHHHHhhccccCcccc--chhHHHhhhhcccc
Confidence 0122456899999999999999999998854 45889999999754
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=306.72 Aligned_cols=244 Identities=33% Similarity=0.595 Sum_probs=224.2
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+.-++.||||++...++|.+.+.+|+.+.+.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+-.+.++..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 4568999999999999999999999999999999885 567999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
|+|...+.++..|..|+..+|+||||||+|.+..+|... .......+.+.+|+.++||+.. ..++-|||+||+.+.
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVDI 322 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeecccccc
Confidence 999999999999999999999999999999999888643 2233445677789999999976 468999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
|||+++| |+++.|+|+.|+.+.|.+|++.+.+++.+.+++++++||+-|++|.|++++.+|.+|.+.++|+
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr------- 395 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR------- 395 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
....++.+||.+++.+|+
T Consensus 396 -------------------~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 396 -------------------GATEVTHEDFMEGILEVQ 413 (424)
T ss_pred -------------------ccccccHHHHHHHHHHHH
Confidence 224699999999998883
No 17
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-34 Score=347.03 Aligned_cols=415 Identities=21% Similarity=0.256 Sum_probs=297.8
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----C-CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----G-NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~-----~-~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~ 715 (1203)
+=++|..|+.++.+..++||||||||++++ | ++|+.|+|||+|.+ |.+.||||||..+|+
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYR------------ 312 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYR------------ 312 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHH------------
Confidence 346677777777778899999999999998 3 48999999999955 999999999999973
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHH
Q 000978 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 795 (1203)
Q Consensus 716 ~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~v 795 (1203)
+.++.|.||.||| ++|.|.+|+.++.+.||+...++ +...|++.+...+
T Consensus 313 --------------------------k~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~----yE~hH~V~i~D~A 361 (786)
T COG0542 313 --------------------------KYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKER----YEAHHGVRITDEA 361 (786)
T ss_pred --------------------------HHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHH----HHHccCceecHHH
Confidence 3445699999999 99999999999999999987655 5556677777767
Q ss_pred hhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccc------------cccchhhhhhhhHHHHHH
Q 000978 796 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARL------------VLSCESIQYGIGIFQAIQ 863 (1203)
Q Consensus 796 L~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl------------~ls~~~l~~al~~lq~i~ 863 (1203)
+. .++.|+..|+.++.+++++|+.+...++...+... .|..-..+ .+..+.-+.....+..+.
T Consensus 362 l~----aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~ 436 (786)
T COG0542 362 LV----AAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEII 436 (786)
T ss_pred HH----HHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66 56899999999999999999999999998887765 44321100 000000001111111100
Q ss_pred Hhh----HhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhc---------C
Q 000978 864 NES----KSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK---------G 930 (1203)
Q Consensus 864 ~~~----k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k---------~ 930 (1203)
.-. ......+...|+.+++.. +++.|+..+...+.-.+..-+-++.+.|++.|..+-.+.+...+ .
T Consensus 437 ~~~~~~~~~~~~~~~~~v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~ 515 (786)
T COG0542 437 KLKEGRIPELEKELEAEVDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLG 515 (786)
T ss_pred HHhhhhhhhHHHHHhhccCHHHHHH-HHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCC
Confidence 000 000000000156666765 66777777665555556555566666666666655444443332 3
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc-----ccccccccHHHH-----HHHHHHHHhcCCc
Q 000978 931 QLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI-----TSKWFGEGEKYV-----KAVFSLASKIAPS 997 (1203)
Q Consensus 931 ~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~seL-----~s~~~G~~e~~I-----~~lF~~A~k~~Ps 997 (1203)
..++|..++||.||+|+|||.||++||..+. -.+++++|+++ +++++|.+..|+ .++.+..++.+++
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PyS 595 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYS 595 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCe
Confidence 4567888899999999999999999999995 88999999998 567889988887 4578888888999
Q ss_pred eEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCC-------ccEEEEEecCCC-------------------
Q 000978 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-------ERILVLAATNRP------------------- 1051 (1203)
Q Consensus 998 ILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~-------~~VlVIaTTN~p------------------- 1051 (1203)
||+||||| .++..+++.|++.+|.....++ .+.+||+|||.-
T Consensus 596 ViLlDEIE------------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~ 663 (786)
T COG0542 596 VILLDEIE------------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEAL 663 (786)
T ss_pred EEEechhh------------hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhH
Confidence 99999998 5668899999999987655543 689999999852
Q ss_pred ---------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-------CCC---CchhHHHHHHHcC--CCcHHHH
Q 000978 1052 ---------FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANMTD--GYSGSDL 1110 (1203)
Q Consensus 1052 ---------~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~-------~l~---~d~dl~~LA~~T~--G~Sg~DL 1110 (1203)
..+.|+|++|++.+|.|.+.+.+...+|+...+... ++. .+.-.+.|+.... .|.++-|
T Consensus 664 ~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL 743 (786)
T COG0542 664 KEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPL 743 (786)
T ss_pred HHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHH
Confidence 124588999999999999999999999998877542 222 2223445555432 3445555
Q ss_pred HHHHHHHHH
Q 000978 1111 KNLCVTAAH 1119 (1203)
Q Consensus 1111 ~~L~~~Aa~ 1119 (1203)
+.+++.-..
T Consensus 744 ~R~Iq~~i~ 752 (786)
T COG0542 744 RRAIQQEIE 752 (786)
T ss_pred HHHHHHHHH
Confidence 555444433
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=300.23 Aligned_cols=246 Identities=37% Similarity=0.621 Sum_probs=226.8
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
..+++++.|+||++-.|+++++.+.+|+.+.++|.+-++. |++|||||||||||||+||+|+|+...+.|+++..++++
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 3468999999999999999999999999999999998864 569999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
.+|.|+....++.+|+.|+..+|+||||||||.+..+|... +......+++-+|+.+|||+.. ..++-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcc
Confidence 99999999999999999999999999999999999888653 3445667899999999999965 5789999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+..+-+..+++||..+|++|.+.++|+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999851
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
.-.+...||++|.+.+.
T Consensus 381 ----------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ----------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ----------------------ceeeeHHHHHHHHHhhc
Confidence 23578899999998763
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=340.57 Aligned_cols=254 Identities=42% Similarity=0.687 Sum_probs=230.6
Q ss_pred CCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 893 ~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
..+.+++|.|+.|++++|++|.|+|.. |++|+.|.+.+. +.|+|+||+||||||||.||+|+|.+.+.||+.++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCC-cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345679999999999999999999985 999999999884 566999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCC---CCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
+..+.|.....++.+|..|+..+||||||||||.+...|. ..+.+......+++|+..||++... ..|+|+|+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 9999999999999999999999999999999999998884 3345566678999999999999654 7899999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 000978 1050 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1203)
Q Consensus 1050 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~ 1126 (1203)
+++.||++++| |||+.|+++.|+...|.+|++.++....+. +++++..||.+|.||+|+||.++|++|+..+.|+
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~-- 536 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK-- 536 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh--
Confidence 99999999999 999999999999999999999999998885 7788988999999999999999999999998885
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccccc
Q 000978 1127 EKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESV 1176 (1203)
Q Consensus 1127 ~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~ 1176 (1203)
....|+..||.+|++++.........
T Consensus 537 ------------------------~~~~i~~~~~~~a~~Rvi~G~~~~~~ 562 (774)
T KOG0731|consen 537 ------------------------GLREIGTKDLEYAIERVIAGMEKKSR 562 (774)
T ss_pred ------------------------ccCccchhhHHHHHHHHhccccccch
Confidence 33679999999999998877654433
No 20
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=296.97 Aligned_cols=249 Identities=35% Similarity=0.597 Sum_probs=226.7
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.++.+++-++|++...+.+++.+.+|.++|++|...++..| +|+|||||||||||.||+|+|++..+.|++++.++++.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34678999999999999999999999999999999998776 99999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC--CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|+....++.+|..|+.++|+|||+||||.+...|.. .+......+.+.+|+.++||+.. ..++-||++||+.+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnrid 297 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRID 297 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEeccccc
Confidence 999999999999999999999999999999999876642 23334456777789999999965 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++++| |+++.|+|++|+.+.|.+||+.+-+++++...+++..+|....|.+|++++.+|.+|.+.++|+-
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----- 372 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998861
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
...+|.+||+-|..+|..--+
T Consensus 373 ---------------------rvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 373 ---------------------RVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred ---------------------hccccHHHHHHHHHHHHhccc
Confidence 146999999999999855443
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-34 Score=308.40 Aligned_cols=244 Identities=37% Similarity=0.637 Sum_probs=225.2
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+.-++.||+|++...+++++.+.+|+.+|+.|...++ +||+||+|||+||||||.||+|+|+...+.|+++-.++|+.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 3568999999999999999999999999999999885 677999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC--CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
|.|+..+.++++|..|..++|+|+||||||.+..+|.+ .+......+.+.+||.++||+.. ++.|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999988864 34445556677789999999965 578999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
|||+++| |+++.|.|+.||...++.||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998862
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
...++++||..|.+.|.
T Consensus 411 --------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 --------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred --------------------HhhccHHHHHHHHHHHH
Confidence 13599999999999884
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3e-33 Score=298.63 Aligned_cols=243 Identities=31% Similarity=0.501 Sum_probs=213.0
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~ 976 (1203)
+++++|++|+++.|...+-+ +..+..|+.|.++. |++||||||||||||++|+|+|++++.|++.+...+|++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLI-MEYLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHH-HHHhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 57899999999999887544 44588999997653 48999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcH
Q 000978 977 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1056 (1203)
Q Consensus 977 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~ 1056 (1203)
+|.....++.+|+.|++.+|||+||||+|.+.-.|.-+........++|.||+.||++. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997555443333345678999999999985 5678999999999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1057 AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN-LCVTAAHRPIKEILEKEKKERAA 1135 (1203)
Q Consensus 1057 aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~-L~~~Aa~~airel~~~~~~~~~~ 1135 (1203)
++++||...|+|.+|+.++|.+|++.++++.++.-+.++..++..|.|+||+||.. ++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 99999999999999999999999999999999998999999999999999999975 5667777776642
Q ss_pred HHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1136 AMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1136 a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
...|+.+||+.|+++.++...
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhccccC
Confidence 234888999999998665543
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=321.10 Aligned_cols=247 Identities=38% Similarity=0.624 Sum_probs=222.1
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|+||+|++.+++.|++.+.+|+.+++.|.+.++. |++++||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999988754 5699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|.|+.+..++.+|..|+...|+||||||||.++.++... +......+++.+|+..++++.. ..+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 2234456778888999988744 35799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.+|++++| ||+..|+|+.|+.++|.+||+.++.+.++..++++..++.+++||+|+||.++|++|++.++++
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~------ 369 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK------ 369 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
....|+++||.+|++++...
T Consensus 370 --------------------~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 370 --------------------NRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------------CCCccCHHHHHHHHHHHHhc
Confidence 12469999999999998443
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=1.6e-31 Score=313.25 Aligned_cols=251 Identities=40% Similarity=0.690 Sum_probs=223.1
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|++++|++++++.+++.+..|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 346899999999999999999999999999999887754 4589999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc--hhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.|.|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+..++..++++.. ..++.||+|||.++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987765322 123345666778878887643 45799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.+|++++| ||+..|+|++|+.++|.+||+.++.+..+..+.++..||..|+||+++||.++|++|++.++++
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------ 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999998888888899999999999999999999999999988774
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
....|+++||.+|++.++++...+
T Consensus 356 --------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 --------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 124699999999999999887665
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-32 Score=292.18 Aligned_cols=248 Identities=33% Similarity=0.585 Sum_probs=226.8
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+++|+.|++|..+..+.|++.+..|+.+|+.|.+.++. |++|||||||||||||.+|+|+|+..++-|+++-.++|+.+
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 47899999999999999999999999999999998865 56999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
|+|+....++.+|+.|+...-||||+||||.+.+.|... +......+.+.+++.++||+.. ++++-|+++||+|+.
T Consensus 251 yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrpdt 328 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPDT 328 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCCC
Confidence 999999999999999999999999999999999988765 3344556777788999999965 588999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
|||+++| |+++.++|.+|+.+.|..||+.+.+.+.+..++-++.||+.+..-+|++|+.+|.+|.+-++|.-
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar------ 402 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR------ 402 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH------
Confidence 9999999 99999999999999999999999999988899999999999999999999999999999998841
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
....|..||.+|+.+|...+.
T Consensus 403 --------------------rk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 403 --------------------RKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred --------------------hhhhhHHHHHHHHHHHHHHHH
Confidence 134788999999999866543
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.9e-32 Score=321.79 Aligned_cols=265 Identities=37% Similarity=0.608 Sum_probs=246.5
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~ 976 (1203)
.++ .+++|+......+++.+..++..+..+...+. +|++++|+|||||+|||.+++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 355 78999999999999999999999999988774 5669999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcC-CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 977 FGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 977 ~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
.|+.+.+++..|+.|.+++ |+||||||||.+++++..... ...++..+++.++++... ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 568899999999999853 57899999999999999
Q ss_pred HHHHh-cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIR-RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 1134 (1203)
Q Consensus 1056 ~aLlr-RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~ 1134 (1203)
++++| ||++.+.+..|+..+|.+|++.+..+++...+.++..+|..++||+|+||..+|.+|++.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99999 9999999999999999999999999999888899999999999999999999999999987773
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcccccc
Q 000978 1135 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRKKA 1198 (1203)
Q Consensus 1135 ~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~Rk~~~ 1198 (1203)
++++|..|+..++||..++.....+.+.|+||||++..|++-|
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq 447 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQ 447 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHH
Confidence 6799999999999999999998889999999999999987643
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=320.27 Aligned_cols=255 Identities=40% Similarity=0.611 Sum_probs=232.2
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
...++|.|+.|.++.|+.+.+.|.. ++.|..|...+. +-|+|+||+||||||||.||+|+|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4578999999999999999999985 899999988776 55699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC--CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.++|-....++.+|..|++++||||||||||.+...|.. .+.+....+.++++++.||++. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 999999999999999999999999999999999877742 3455666789999999999996 357899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++++| ||++.|.++.||...|++|++.++.+..+..++++..+|++|.||+++||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchh
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMS 1179 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~ 1179 (1203)
....++|.||.+|++++.....+....+.
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks~vis 402 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKSRVIS 402 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCCcccC
Confidence 23579999999999999877766655443
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.1e-30 Score=315.10 Aligned_cols=270 Identities=40% Similarity=0.600 Sum_probs=233.6
Q ss_pred CCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 893 ~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
...+.++|+|++|++++++.+++.+.. +.+++.|.+.+. .+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 345678999999999999999998875 788888877664 455899999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
...+.|..+..++.+|..|+...|+||||||||.++..+... ........++++|+..++++.. ..+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCC
Confidence 999999999999999999999999999999999998766432 2234456788999999998754 457999999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1203)
Q Consensus 1051 p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~ 1128 (1203)
++.||++++| ||+..|+|+.|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---- 278 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---- 278 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 9999999999999999999999998877777889999999999999999999999998776553
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000978 1129 EKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1192 (1203)
Q Consensus 1129 ~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g 1192 (1203)
....|+.+||.+|++++..........+.+..+|...|.+.|
T Consensus 279 ----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 225799999999999987766555555677778887777655
No 29
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=3.8e-30 Score=323.18 Aligned_cols=390 Identities=19% Similarity=0.242 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCc
Q 000978 639 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGL 712 (1203)
Q Consensus 639 ~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~------~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~ 712 (1203)
.+..+..+++.+.+ .+|+||||||||.+++ |+.+..+.|++.|++ |+|.|||+||..++.
T Consensus 259 ~e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~--------- 324 (731)
T TIGR02639 259 FEERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYK--------- 324 (731)
T ss_pred HHHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHH---------
Confidence 33456666666555 6799999999999985 236788999999965 999999999987641
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhH
Q 000978 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1203)
Q Consensus 713 ~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l 792 (1203)
..++.|.+|.||| +.|+|.+|+.+++.+||+....+.. ..+++...
T Consensus 325 -----------------------------~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e----~~~~v~i~ 370 (731)
T TIGR02639 325 -----------------------------NHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYE----EFHHVKYS 370 (731)
T ss_pred -----------------------------HHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHH----hccCcccC
Confidence 2234699999999 6999999999999999998765522 23344444
Q ss_pred HHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhc
Q 000978 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKS 872 (1203)
Q Consensus 793 ~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~ 872 (1203)
..++. .+.+|...|+.++.+++++|+.+...++...+. +....+..|+.+++...+..+-.+ |..
T Consensus 371 ~~al~----~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~----~~~~~~~~v~~~~i~~~i~~~tgi-P~~------ 435 (731)
T TIGR02639 371 DEALE----AAVELSARYINDRFLPDKAIDVIDEAGASFRLR----PKAKKKANVSVKDIENVVAKMAHI-PVK------ 435 (731)
T ss_pred HHHHH----HHHHhhhcccccccCCHHHHHHHHHhhhhhhcC----cccccccccCHHHHHHHHHHHhCC-Chh------
Confidence 44544 456888899999999999999887665543332 111123446666666555543221 000
Q ss_pred ccccCCHH------HHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCC
Q 000978 873 LKDVVTEN------EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 946 (1203)
Q Consensus 873 ~k~~v~~~------e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPG 946 (1203)
.++.+ .++..+. ..+.|++...+.+.+.+..... .-....+|...+||+||+|
T Consensus 436 ---~~~~~~~~~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~~~-----g~~~~~~p~~~~lf~Gp~G 494 (731)
T TIGR02639 436 ---TVSVDDREKLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRSRA-----GLGNPNKPVGSFLFTGPTG 494 (731)
T ss_pred ---hhhhHHHHHHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHHhc-----CCCCCCCCceeEEEECCCC
Confidence 01111 1111111 2455777777777666542100 0011235656799999999
Q ss_pred ChHHHHHHHHHHHhCCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 947 TGKTMLAKAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 947 TGKT~LArALA~eLg~~fi~I~~seL~s-----~~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
||||+||+++|+.++.+++.++|+++.. .++|.+..++ ..+....++.+.+||||||||.+-
T Consensus 495 vGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~-------- 566 (731)
T TIGR02639 495 VGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH-------- 566 (731)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC--------
Confidence 9999999999999999999999988633 3444443332 345566677788999999999772
Q ss_pred hHHHHHHHHHHHHhhcCCccc-------CCccEEEEEecCCCC-------------------------CCcHHHHhcccc
Q 000978 1017 HEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DLDEAVIRRLPR 1064 (1203)
Q Consensus 1017 ~~al~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~ 1064 (1203)
..+.+.|++.++..... +-.+++||+|||... .+.|+|+.||+.
T Consensus 567 ----~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~ 642 (731)
T TIGR02639 567 ----PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDA 642 (731)
T ss_pred ----HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCe
Confidence 34556666666654222 235788999998631 256889999999
Q ss_pred cccCCCCCHHHHHHHHHHHHhhC-------CCC---CchhHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 000978 1065 RLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1065 ~I~v~~Pd~eeR~eIL~~~l~~~-------~l~---~d~dl~~LA~~--T~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
+|.|.+.+.++..+|++..+.+. ++. .+..++.|+.. ...|..+.|+.+++.....++.+
T Consensus 643 Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 643 IIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 99999999999999999887631 111 33345666664 23455677777766666555443
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=9e-31 Score=308.61 Aligned_cols=246 Identities=36% Similarity=0.616 Sum_probs=219.7
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+..+|+||+|++..++.|++.+..++.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+..+++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 46899999999999999999999999999999988754 55899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
|.|+.+..++.+|..|....|+||||||||.++.++... +......+.+.+++..++++.. ..++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHH
Confidence 999999999999999999999999999999998776432 2233445666778888888743 357999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
||++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+++||.++|.+|++.|+++
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~------- 407 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE------- 407 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999997 9999999999999999999999999888888899999999999999999999999999998875
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
....|+++||.+|++++...
T Consensus 408 -------------------~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 408 -------------------RRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -------------------cCCccCHHHHHHHHHHHHhh
Confidence 12469999999999998543
No 31
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=4e-30 Score=320.28 Aligned_cols=394 Identities=18% Similarity=0.233 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCc
Q 000978 639 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGL 712 (1203)
Q Consensus 639 ~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~------~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~ 712 (1203)
.+..++.+++.+.. .++.||||||||.+++ ++.++.+.|+++|.+ |.|.|||+||..++++
T Consensus 263 ~e~rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~-------- 329 (758)
T PRK11034 263 FEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSN-------- 329 (758)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHH--------
Confidence 44456677776665 7899999999999985 346788999999965 9999999999887421
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhH
Q 000978 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 792 (1203)
Q Consensus 713 ~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l 792 (1203)
..+.|.+|.||| ++|.|.+|+.++++.||+....+ +...+++...
T Consensus 330 ------------------------------~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~----ye~~h~v~i~ 374 (758)
T PRK11034 330 ------------------------------IFEKDRALARRF-QKIDITEPSIEETVQIINGLKPK----YEAHHDVRYT 374 (758)
T ss_pred ------------------------------HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH----hhhccCCCcC
Confidence 223699999999 79999999999999999977654 4445666666
Q ss_pred HHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhc
Q 000978 793 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKS 872 (1203)
Q Consensus 793 ~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~ 872 (1203)
..++. .+.+|...|+.++.+++++|+.+...++...+. +....+..++..++...+..+..+ |...
T Consensus 375 ~~al~----~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~----~~~~~~~~v~~~~i~~v~~~~tgi-p~~~----- 440 (758)
T PRK11034 375 AKAVR----AAVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVSKRKKTVNVADIESVVARIARI-PEKS----- 440 (758)
T ss_pred HHHHH----HHHHHhhccccCccChHHHHHHHHHHHHhhccC----cccccccccChhhHHHHHHHHhCC-Chhh-----
Confidence 66665 357889999999999999999998887755442 111122345555555444432211 0000
Q ss_pred ccccCCHHHHH--HHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHH
Q 000978 873 LKDVVTENEFE--KRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKT 950 (1203)
Q Consensus 873 ~k~~v~~~e~e--~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT 950 (1203)
+..++.+ ..+... + -..+.|++++++.|.+.+...... -....+|..++||+||||||||
T Consensus 441 ----~~~~~~~~l~~l~~~-L--------~~~ViGQ~~ai~~l~~~i~~~~~g-----l~~~~kp~~~~Lf~GP~GvGKT 502 (758)
T PRK11034 441 ----VSQSDRDTLKNLGDR-L--------KMLVFGQDKAIEALTEAIKMSRAG-----LGHEHKPVGSFLFAGPTGVGKT 502 (758)
T ss_pred ----hhhhHHHHHHHHHHH-h--------cceEeCcHHHHHHHHHHHHHHhcc-----ccCCCCCcceEEEECCCCCCHH
Confidence 1111111 011111 1 124678888888888877531110 0112466678999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeccccc-----cccccccHHHH-----HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHH
Q 000978 951 MLAKAVATEAGANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAM 1020 (1203)
Q Consensus 951 ~LArALA~eLg~~fi~I~~seL~-----s~~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al 1020 (1203)
++|+++|..++.+|+.++|+++. +.++|.+..++ ..+....++.+.+||||||||.+ .
T Consensus 503 ~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~ 570 (758)
T PRK11034 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------H 570 (758)
T ss_pred HHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------h
Confidence 99999999999999999998863 34555544333 23445556677899999999977 2
Q ss_pred HHHHHHHHHhhcCCccc-------CCccEEEEEecCCC-------------------------CCCcHHHHhcccccccC
Q 000978 1021 RKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLMV 1068 (1203)
Q Consensus 1021 ~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~~I~v 1068 (1203)
..+.+.|++.++..... +-.+++||+|||.- ..+.|+|++|++.+|.|
T Consensus 571 ~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f 650 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF 650 (758)
T ss_pred HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEc
Confidence 45666777777643221 22578999999932 13668999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh-------CCCC---CchhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 000978 1069 NLPDAPNRAKILQVILAK-------EDLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1069 ~~Pd~eeR~eIL~~~l~~-------~~l~---~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
++++.++..+|+...+.. .++. .+..++.|+... ..|..+.|+.+++.-...++.+
T Consensus 651 ~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 651 DHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999877653 2222 233345566433 2345566766666555554443
No 32
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=331.70 Aligned_cols=348 Identities=20% Similarity=0.243 Sum_probs=236.2
Q ss_pred CceeeeeccCCCCcceeeccCCCCCCCC-----CCCCCCCC---cccccccccccccCCCcchhHHHHHHHHHHHHhhhc
Q 000978 583 GKVALLFEDNPSSKIGVRFDKPIPDGVD-----LGGQCEGG---HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 654 (1203)
Q Consensus 583 g~v~~~~e~n~s~kvgV~Fd~~~~~~~~-----l~~~c~~~---~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~ 654 (1203)
+++...|..+|- =||+||+|||+|+| |++.|+.+ ++|||+||+||||||||| ++++++.||+.+.+
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgE--aERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGE--AERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCc--HHHHHHHHHHHHhc--
Confidence 344444445552 38999999999999 88999999 999999999999999999 99999999999999
Q ss_pred cCCCeEEEEcchhhhhc----CCcchhhhHHHHHhcC------CCcEEEEeeeccCCCccccCCCCCccccccCCchhhh
Q 000978 655 RSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTAL 724 (1203)
Q Consensus 655 ~~~p~Ilfiddi~~~l~----~~~~~~~~lk~~L~~l------~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l 724 (1203)
++|.|||||||+.+.. .+.+.|+.++++|..| +|+|+||||||++|++|++ ||||||
T Consensus 362 -~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpa-------LRRPgr----- 428 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPA-------LRRPGR----- 428 (1080)
T ss_pred -cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchh-------hcCCcc-----
Confidence 9999999999998775 5688999999999665 7899999999999999999 999999
Q ss_pred ccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcc
Q 000978 725 LDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECE 804 (1203)
Q Consensus 725 ~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~ 804 (1203)
|...|++++|+.++|.+|+.+|..++...+... ..+..+-.+.||.|+
T Consensus 429 -----------------------------fdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~---l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 429 -----------------------------FDREFYFPLPDVDARAKILDIHTRKWEPPISRE---LLLWLAEETSGYGGA 476 (1080)
T ss_pred -----------------------------cceeEeeeCCchHHHHHHHHHhccCCCCCCCHH---HHHHHHHhccccchH
Confidence 888999999999999999999987765433221 223345567899999
Q ss_pred cccchhccccccchHHHHHHHHHHHhhhhhcCC---CCC--ccccccccchhhhhhhhHHHHHHHhhHh--------hhh
Q 000978 805 GLETLCIRDQSLTNESAEKIVGWALSHHLMQNP---EAD--PDARLVLSCESIQYGIGIFQAIQNESKS--------LKK 871 (1203)
Q Consensus 805 DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~---~p~--~~~kl~ls~~~l~~al~~lq~i~~~~k~--------~k~ 871 (1203)
||+.+|+++++.+.. +..-..+ +-. ....+.+.-.+|..++. ++.+.... +..
T Consensus 477 DlkaLCTeAal~~~~-----------r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~---~i~ps~~R~~~~~s~Pl~~ 542 (1080)
T KOG0732|consen 477 DLKALCTEAALIALR-----------RSFPQIYSSSDKLLIDVALIKVEVRDFVEAMS---RITPSSRRSSVIFSRPLST 542 (1080)
T ss_pred HHHHHHHHHhhhhhc-----------cccCeeecccccccccchhhhhhhHhhhhhhh---ccCCCCCccccCCCCCCCc
Confidence 999999988773311 1000000 000 00111122223332222 11111110 000
Q ss_pred cccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHH
Q 000978 872 SLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 951 (1203)
Q Consensus 872 ~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~ 951 (1203)
.++..++..+... .+...+... ...--+-+..+..++++... |.-..+.+| .+|+.|..|.|.++
T Consensus 543 ~~~~ll~~~~~~~-~iq~~~~va-----~~~~k~~e~~~~~v~~~e~~-------~~i~lic~~--~lli~~~~~~g~~~ 607 (1080)
T KOG0732|consen 543 YLKPLLPFQDALE-DIQGLMDVA-----SSMAKIEEHLKLLVRSFESN-------FAIRLICRP--RLLINGGKGSGQDY 607 (1080)
T ss_pred ceecccchHHHHH-HhhcchhHH-----hhhhhHHHHhHHHHHhhhcc-------cchhhhcCc--HHhcCCCcccccCc
Confidence 0001111001100 111111110 00000001111111111110 111122333 59999999999999
Q ss_pred HHHHHHHHh-CCcEEEEecccccccc-ccccHHHHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 952 LAKAVATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 952 LArALA~eL-g~~fi~I~~seL~s~~-~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
+..||.+.+ ++++..+..+.+.... ....+..+..+|.+|++..||||||.++|.|...
T Consensus 608 lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 608 LGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence 999999998 8888888888877765 6778899999999999999999999999999643
No 33
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-30 Score=285.37 Aligned_cols=234 Identities=18% Similarity=0.277 Sum_probs=199.4
Q ss_pred HHHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHH
Q 000978 374 VFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKA 453 (1203)
Q Consensus 374 ~~~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakA 453 (1203)
-|+..+...||.+.+|+|+|++.... |.+|+.|.+.+..+|+++++++ ...|...+++|||+|||| ++++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~-~g~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFA-KGKLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhc-ccccccCCccceecCCCC--chHHHHHHH
Confidence 37788899999999999999998888 9999999999999999999987 446889999999999999 999999999
Q ss_pred HHhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000978 454 LAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 533 (1203)
Q Consensus 454 LA~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1203)
+|++.||.|+.|+++.|.
T Consensus 147 ~Akeaga~fInv~~s~lt-------------------------------------------------------------- 164 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLT-------------------------------------------------------------- 164 (386)
T ss_pred HHHHcCCCcceeeccccc--------------------------------------------------------------
Confidence 999999999999983332
Q ss_pred ccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCC
Q 000978 534 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 613 (1203)
Q Consensus 534 ~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~ 613 (1203)
T Consensus 165 -------------------------------------------------------------------------------- 164 (386)
T KOG0737|consen 165 -------------------------------------------------------------------------------- 164 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC------------cchhhhHH
Q 000978 614 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN------------SDSYSTFK 681 (1203)
Q Consensus 614 ~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~------------~~~~~~lk 681 (1203)
|||-+| .+.++.++|.++.+ .+|+|||||||+++++.+ .+|+..|.
T Consensus 165 -----------------~KWfgE--~eKlv~AvFslAsK---l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 165 -----------------SKWFGE--AQKLVKAVFSLASK---LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD 222 (386)
T ss_pred -----------------hhhHHH--HHHHHHHHHhhhhh---cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 245455 77899999999997 999999999999999732 33333333
Q ss_pred HHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEe
Q 000978 682 SRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH 761 (1203)
Q Consensus 682 ~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~ 761 (1203)
....+-+.+|+|+||||++-+ +|+|+.||||.+|.|+
T Consensus 223 Gl~s~~~~rVlVlgATNRP~D-------------------------------------------lDeAiiRR~p~rf~V~ 259 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNRPFD-------------------------------------------LDEAIIRRLPRRFHVG 259 (386)
T ss_pred cccCCCCceEEEEeCCCCCcc-------------------------------------------HHHHHHHhCcceeeeC
Confidence 333333447999999999853 7999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHH
Q 000978 762 MPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEK 823 (1203)
Q Consensus 762 lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~ 823 (1203)
+|+.++|.+||+..|.. -+...+++..+.+-.+.||+|+||+++|+.+.+.+...+..
T Consensus 260 lP~~~qR~kILkviLk~----e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 260 LPDAEQRRKILKVILKK----EKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred CCchhhHHHHHHHHhcc----cccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999999988854 34557888888889999999999999999999988665443
No 34
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=5.3e-28 Score=306.29 Aligned_cols=412 Identities=19% Similarity=0.236 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccc
Q 000978 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLF 714 (1203)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l 714 (1203)
+..|..+++.+.. ..+++||||||||.+++ +++++.+.|+++|++ |.+.|||+||..++.
T Consensus 265 e~~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~----------- 329 (852)
T TIGR03345 265 ENRLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYK----------- 329 (852)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHh-----------
Confidence 3345555555533 15799999999999986 667888999999965 999999999988752
Q ss_pred cccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHH
Q 000978 715 TKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRT 794 (1203)
Q Consensus 715 ~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~ 794 (1203)
..+++|.+|.||| +.|.|.+|+.+++.+||+..... +...+++.....
T Consensus 330 ---------------------------~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~----~e~~~~v~i~d~ 377 (852)
T TIGR03345 330 ---------------------------KYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPV----LEKHHGVLILDE 377 (852)
T ss_pred ---------------------------hhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHh----hhhcCCCeeCHH
Confidence 2234799999999 79999999999999999755433 222345555555
Q ss_pred HhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCc--c--ccc--------cccchh-----------
Q 000978 795 VLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D--ARL--------VLSCES----------- 851 (1203)
Q Consensus 795 vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~--~--~kl--------~ls~~~----------- 851 (1203)
++. .+..|...|+.++.+++++|+.+...++...+.....|.. + .++ .+..++
T Consensus 378 al~----~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (852)
T TIGR03345 378 AVV----AAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLA 453 (852)
T ss_pred HHH----HHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH
Confidence 554 3568889999999999999999999888777765443321 0 000 000000
Q ss_pred --------hhhhhhHHHHHHHhhH---------------------------------------hhhh---cccccCCHHH
Q 000978 852 --------IQYGIGIFQAIQNESK---------------------------------------SLKK---SLKDVVTENE 881 (1203)
Q Consensus 852 --------l~~al~~lq~i~~~~k---------------------------------------~~k~---~~k~~v~~~e 881 (1203)
+..-+..+.......+ .... .....++.++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 533 (852)
T TIGR03345 454 ELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQA 533 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHH
Confidence 0000000000000000 0000 0112356666
Q ss_pred HHHHHhcCcCCCCCCCccccc--------------ccccHHHHHHHHHHHhCccCchhhhhcCCC---CCCCceEEEEcC
Q 000978 882 FEKRLLADVIPPSDIGVTFDD--------------IGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGP 944 (1203)
Q Consensus 882 ~e~~ll~~ii~~~~~~vt~~d--------------I~Gle~vk~~L~e~v~~pl~~~e~f~k~~~---~~P~~gVLL~GP 944 (1203)
+.. +++.++..+...+..++ +.|++...+.+.+.+... +.++ .+|...+||+||
T Consensus 534 i~~-vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp 604 (852)
T TIGR03345 534 VAE-VVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGP 604 (852)
T ss_pred HHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECC
Confidence 654 56667666655554444 445555555544444321 1122 345456999999
Q ss_pred CCChHHHHHHHHHHHh---CCcEEEEeccccc-----cccccccHHHH-----HHHHHHHHhcCCceEEEccchhhccCC
Q 000978 945 PGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1203)
Q Consensus 945 PGTGKT~LArALA~eL---g~~fi~I~~seL~-----s~~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r 1011 (1203)
||+|||++|+++|..+ ...++.++|+++. +.++|.+..++ ..+....++.+++||+|||||..
T Consensus 605 ~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka---- 680 (852)
T TIGR03345 605 SGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA---- 680 (852)
T ss_pred CCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc----
Confidence 9999999999999999 4578999998763 33455544443 23556667788899999999865
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCccc-------CCccEEEEEecCCCC-----------------------------CCc
Q 000978 1012 ENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-----------------------------DLD 1055 (1203)
Q Consensus 1012 ~~~~~~~al~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~-----------------------------~Ld 1055 (1203)
...+.+.|++.++..... +-.+.+||+|||... .+.
T Consensus 681 --------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 752 (852)
T TIGR03345 681 --------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFK 752 (852)
T ss_pred --------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhcc
Confidence 134555566666544322 226789999998521 255
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhC--------CCC---CchhHHHHHHHcCC--CcHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS---PDVDFDAIANMTDG--YSGSDLKNLCVTAAHRPI 1122 (1203)
Q Consensus 1056 ~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~--------~l~---~d~dl~~LA~~T~G--~Sg~DL~~L~~~Aa~~ai 1122 (1203)
|+|++|++ +|.|.+++.++..+|+...+... ++. ++...+.|+....+ |-.+.|+++++.-...++
T Consensus 753 PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 753 PAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPEL 831 (852)
T ss_pred HHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 78888996 88999999999999998876541 222 33345667776543 557778877777666555
Q ss_pred HH
Q 000978 1123 KE 1124 (1203)
Q Consensus 1123 re 1124 (1203)
.+
T Consensus 832 a~ 833 (852)
T TIGR03345 832 SR 833 (852)
T ss_pred HH
Confidence 54
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=7.3e-29 Score=288.65 Aligned_cols=244 Identities=43% Similarity=0.719 Sum_probs=214.6
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|++++|++++++.|++.+..++.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+.++..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 457899999999999999999999999999999887754 5589999999999999999999999999999999999988
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc--hhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.++|+....++.+|..++...|+||||||||.++..+.... ......+.+..++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999986654321 122344566777777777633 35799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.+|+++++ ||++.|+|+.|+.++|.+||+.++....+..++++..|+..++||+++||.++|.+|++.++++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~------ 346 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE------ 346 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777789999999999999999999999999998774
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
....|+++||.+|++++
T Consensus 347 --------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 --------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCCccCHHHHHHHHHHh
Confidence 12469999999999886
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.5e-29 Score=314.00 Aligned_cols=290 Identities=38% Similarity=0.624 Sum_probs=247.0
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
..++|+||+|++.+++.+++++..++.+++.|...++ .+++++||+||||||||+||+++|++++.+++.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4689999999999999999999999999999988775 455899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
+.|..+..++.+|..|....|+||||||||.+++.+.... .....+++++|+..++++.. ..+++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23446778889888988743 46799999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1133 (1203)
Q Consensus 1056 ~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~ 1133 (1203)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..++..++||+++||..+|..|++.++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999888877777889999999999999999999999999999888654211100
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcccc
Q 000978 1134 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRK 1196 (1203)
Q Consensus 1134 ~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~Rk~ 1196 (1203)
. .+..+ ........++++||..|++.+.|+...+.....+.+.|++++|.+..|+.
T Consensus 409 ~---~~~i~----~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~ 464 (733)
T TIGR01243 409 E---AEEIP----AEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQE 464 (733)
T ss_pred c---ccccc----chhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHH
Confidence 0 00000 01112346899999999999999988877777789999999999888763
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.3e-28 Score=302.26 Aligned_cols=266 Identities=36% Similarity=0.568 Sum_probs=222.8
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
.+..++|+|++|++++++.+.+++.. +..++.|...+. .+++++||+||||||||+||+++|.+++.+|+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34568999999999999999998865 778888877664 4558999999999999999999999999999999999998
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC--CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
..+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....+++.|+..++++.. +.+++||++||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 8888888889999999999999999999999999866542 22344556788899999998753 4679999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.+|++++| ||++.|.|++|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~----- 406 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR----- 406 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999999877778889999999999999999999999998876553
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcC
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1190 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~ 1190 (1203)
....|+++||++|++++........ ...+..+|--.|.+
T Consensus 407 ---------------------~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hE 445 (638)
T CHL00176 407 ---------------------KKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHE 445 (638)
T ss_pred ---------------------CCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHh
Confidence 2246999999999999855443221 22333444444444
No 38
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=3.9e-28 Score=289.88 Aligned_cols=274 Identities=29% Similarity=0.499 Sum_probs=217.1
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 964 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~----------f 964 (1203)
.+.++|++|+|++..++.+++.+..|+.+++.|...++. |++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 346899999999999999999999999999999887754 55899999999999999999999998644 6
Q ss_pred EEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCc
Q 000978 965 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1040 (1203)
Q Consensus 965 i~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~ 1040 (1203)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||||.++..+.........+.++++|+..++++.. ..
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--LD 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--CC
Confidence 677778889999999999999999988764 699999999999998776544445557888999999999854 36
Q ss_pred cEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhC-CCC---------CchhHHHHHHH-------
Q 000978 1041 RILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE-DLS---------PDVDFDAIANM------- 1101 (1203)
Q Consensus 1041 ~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~-~l~---------~d~dl~~LA~~------- 1101 (1203)
+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998642 221 11122222221
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHH
Q 000978 1102 ----------------------TDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDD 1159 (1203)
Q Consensus 1102 ----------------------T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eD 1159 (1203)
++.+||++|.++|.+|...++++.+.. ..+.|+++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~----------------------~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG----------------------GQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc----------------------CCcCcCHHH
Confidence 445777777777777777777664411 125799999
Q ss_pred HHHHHHHhcccccccccchhhhHHHHHHhcCCCcc
Q 000978 1160 FKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1194 (1203)
Q Consensus 1160 f~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~R 1194 (1203)
+..|+..-.... .+..+...-.+|..|.|..|.|
T Consensus 471 l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 471 LLAAVLDEFRES-EDLPNTTNPDDWARISGKKGER 504 (512)
T ss_pred HHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCCc
Confidence 999998754332 1223334456799999987654
No 39
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=1.5e-27 Score=302.95 Aligned_cols=413 Identities=17% Similarity=0.207 Sum_probs=266.1
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~ 716 (1203)
-|..+++.+.. .+++||||||||.+++ |..+..+.|++.|.+ |.|.|||+||..++++
T Consensus 259 rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~------------ 321 (821)
T CHL00095 259 RLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRK------------ 321 (821)
T ss_pred HHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHH------------
Confidence 45555555544 7899999999999986 446788999999965 9999999999887532
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHh
Q 000978 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 796 (1203)
Q Consensus 717 ~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL 796 (1203)
..+.|.+|.+|| +.|.+..|+.++...|++...+...+.+. +..-.+++
T Consensus 322 --------------------------~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~----v~i~deal 370 (821)
T CHL00095 322 --------------------------HIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHN----LSISDKAL 370 (821)
T ss_pred --------------------------HHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcC----CCCCHHHH
Confidence 123588999999 78999999999999999876655333322 22222333
Q ss_pred hccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCcccc-------------ccccchhhhhhhhHHHH--
Q 000978 797 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDAR-------------LVLSCESIQYGIGIFQA-- 861 (1203)
Q Consensus 797 ~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~k-------------l~ls~~~l~~al~~lq~-- 861 (1203)
. ...+|...++.++.+|+++|+.+...++...+.....|..... ..+..+++..+......
T Consensus 371 ~----~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (821)
T CHL00095 371 E----AAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREM 446 (821)
T ss_pred H----HHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 2 3357888899999999999999999888777765443321100 00111122211111000
Q ss_pred -HHHhhHhh---------hhcccccCCHHHHHHHHhcCcCCCCCCCccccc--------------ccccHHHHHHHHHHH
Q 000978 862 -IQNESKSL---------KKSLKDVVTENEFEKRLLADVIPPSDIGVTFDD--------------IGALENVKDTLKELV 917 (1203)
Q Consensus 862 -i~~~~k~~---------k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~d--------------I~Gle~vk~~L~e~v 917 (1203)
+....... .......++.+++.. +++.++..+...+.-++ +.|++.+.+.+...+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i 525 (821)
T CHL00095 447 EVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAE-IVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAI 525 (821)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCccCHHHHHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHH
Confidence 00000000 001124577788775 66777776655555443 445555555554444
Q ss_pred hCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-----cccccccHHHH-----
Q 000978 918 MLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV----- 984 (1203)
Q Consensus 918 ~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~-----s~~~G~~e~~I----- 984 (1203)
..... .-....+|...+||+||+|+|||+||++||+.+ +.++++++++++. ++++|.+..++
T Consensus 526 ~~~~~-----gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~ 600 (821)
T CHL00095 526 RRARV-----GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG 600 (821)
T ss_pred HHHhh-----cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc
Confidence 31100 001234566679999999999999999999998 4689999998863 33445444433
Q ss_pred HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc-------cCCccEEEEEecCCCC-----
Q 000978 985 KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNRPF----- 1052 (1203)
Q Consensus 985 ~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~-------~~~~~VlVIaTTN~p~----- 1052 (1203)
..+....++.+.+||+|||||.+ ...+.+.|++.++.... .+-.+.+||+|||...
T Consensus 601 ~~l~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~ 668 (821)
T CHL00095 601 GQLTEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668 (821)
T ss_pred chHHHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence 34667777778899999999976 14456666666664322 1236889999988521
Q ss_pred --------------------------------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-------CCC---
Q 000978 1053 --------------------------------DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS--- 1090 (1203)
Q Consensus 1053 --------------------------------~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~-------~l~--- 1090 (1203)
.+.|+|++|++.+|.|.+.+.++..+|++..+... ++.
T Consensus 669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~ 748 (821)
T CHL00095 669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEV 748 (821)
T ss_pred hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 03367888999999999999999999998877642 111
Q ss_pred CchhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 000978 1091 PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1091 ~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
.+...+.|+... ..|..+.|+.+++.-...++.+
T Consensus 749 ~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 749 TERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred CHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 223345666642 2445666766666655554443
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.3e-27 Score=295.81 Aligned_cols=267 Identities=39% Similarity=0.590 Sum_probs=226.0
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
.....+|.++.|++..++.+.+.+.. +..+..+...+. ..++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 555666654443 3447899999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC--CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
..+.|.....++.+|..|+...|+||||||||.++..+.. .+.+....+++++++..++++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 8899999999999999999999999999999999877653 23344556789999999999854 4679999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.||++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..+|+.|.||+++||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999888888899999999999999999999999999887763
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcC
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1190 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~ 1190 (1203)
....|+++||++|++.+.+........+.+..+|.-.|.+
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he 415 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHE 415 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 2246999999999999987765544445554445444433
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=1.3e-26 Score=295.33 Aligned_cols=413 Identities=18% Similarity=0.269 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccc
Q 000978 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLF 714 (1203)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l 714 (1203)
+..+..+++.+.. ..+|+||||||||.+++ |+.++.+.|+++|.+ |.|.|||+||..++++
T Consensus 251 e~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~r~---------- 316 (852)
T TIGR03346 251 EERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEYRK---------- 316 (852)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHHHH----------
Confidence 3345555555543 14799999999999985 446788999999954 9999999999887521
Q ss_pred cccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHH
Q 000978 715 TKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRT 794 (1203)
Q Consensus 715 ~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~ 794 (1203)
.++.|.+|.+|| +.|.|.+|+.++++.||+....+ +...+++.....
T Consensus 317 ----------------------------~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~----~e~~~~v~~~d~ 363 (852)
T TIGR03346 317 ----------------------------YIEKDAALERRF-QPVFVDEPTVEDTISILRGLKER----YEVHHGVRITDP 363 (852)
T ss_pred ----------------------------HhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHH----hccccCCCCCHH
Confidence 233689999999 78999999999999999876544 444556555554
Q ss_pred HhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCcc----ccc--------cccch------------
Q 000978 795 VLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPD----ARL--------VLSCE------------ 850 (1203)
Q Consensus 795 vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~----~kl--------~ls~~------------ 850 (1203)
++. .+.+|...|+.++.+|+++|+.+...++...+.....|..- .++ .+..+
T Consensus 364 ~i~----~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (852)
T TIGR03346 364 AIV----AAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDL 439 (852)
T ss_pred HHH----HHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 444 45688999999999999999999988887766544333210 000 00000
Q ss_pred -----hhhhhhhHHHH--------------HHHh----------------------------------hHhhh-------
Q 000978 851 -----SIQYGIGIFQA--------------IQNE----------------------------------SKSLK------- 870 (1203)
Q Consensus 851 -----~l~~al~~lq~--------------i~~~----------------------------------~k~~k------- 870 (1203)
.+..-+..+.. +... .....
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (852)
T TIGR03346 440 EKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEET 519 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcc
Confidence 00000000000 0000 00000
Q ss_pred --hcccccCCHHHHHHHHhcCcCCCCCCCcccc--------------cccccHHHHHHHHHHHhCccCchhhhhcC---C
Q 000978 871 --KSLKDVVTENEFEKRLLADVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKG---Q 931 (1203)
Q Consensus 871 --~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~--------------dI~Gle~vk~~L~e~v~~pl~~~e~f~k~---~ 931 (1203)
......++.+++.. +++.++..+...+..+ .+.|++...+.+...+... +. .
T Consensus 520 ~~~l~~~~v~~~~i~~-v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~ 590 (852)
T TIGR03346 520 KPRLLREEVTAEEIAE-VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSD 590 (852)
T ss_pred ccccccCCcCHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCC
Confidence 00112355666654 5566655554433333 3455555555555444321 11 1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCce
Q 000978 932 LTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSV 998 (1203)
Q Consensus 932 ~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-----~~~G~~e~~I-----~~lF~~A~k~~PsI 998 (1203)
..+|...+||+||+|||||++|++||..+ +.+++.++|+++.. .++|.+..++ ..+....++.+.+|
T Consensus 591 ~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~v 670 (852)
T TIGR03346 591 PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSV 670 (852)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcE
Confidence 23566779999999999999999999988 57899999987633 3344433322 34555566777889
Q ss_pred EEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc-------CCccEEEEEecCCCC-------------------
Q 000978 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF------------------- 1052 (1203)
Q Consensus 999 LfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~------------------- 1052 (1203)
|||||||.+ . ..+.+.|+..++..... +-.+.+||+|||...
T Consensus 671 lllDeieka-----~-------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~ 738 (852)
T TIGR03346 671 VLFDEVEKA-----H-------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAV 738 (852)
T ss_pred EEEeccccC-----C-------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHH
Confidence 999999966 2 34455556655433211 235788999999721
Q ss_pred ------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-------CCCC---CchhHHHHHHHcC--CCcHHHHHHHH
Q 000978 1053 ------DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS---PDVDFDAIANMTD--GYSGSDLKNLC 1114 (1203)
Q Consensus 1053 ------~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~-------~~l~---~d~dl~~LA~~T~--G~Sg~DL~~L~ 1114 (1203)
.+.|+|+.|++.++.|.+++.++..+|+...+.. .++. .+..++.|++..- .+..+.|++++
T Consensus 739 ~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i 818 (852)
T TIGR03346 739 MEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAI 818 (852)
T ss_pred HHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHH
Confidence 1447788899999999999999999999887652 1111 3334566666532 46678888888
Q ss_pred HHHHHHHHHH
Q 000978 1115 VTAAHRPIKE 1124 (1203)
Q Consensus 1115 ~~Aa~~aire 1124 (1203)
+.....++.+
T Consensus 819 ~~~i~~~l~~ 828 (852)
T TIGR03346 819 QREIENPLAK 828 (852)
T ss_pred HHHHHHHHHH
Confidence 8877766554
No 42
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=6.7e-27 Score=297.02 Aligned_cols=413 Identities=19% Similarity=0.259 Sum_probs=253.2
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~ 716 (1203)
.+..+++-+.. ..+|+||||||+|.+++ |..+..+.|+++|++ |.+.|||+||..+++
T Consensus 258 ~lk~~~~~~~~--~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r------------- 320 (857)
T PRK10865 258 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYR------------- 320 (857)
T ss_pred HHHHHHHHHHH--cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHH-------------
Confidence 34555544332 26899999999999985 567889999999965 999999999998852
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHh
Q 000978 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 796 (1203)
Q Consensus 717 ~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL 796 (1203)
..++.|.+|.||| +.|.|.+|+.++++.||+....+ +...+++.....++
T Consensus 321 -------------------------~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~~----~e~~~~v~~~d~a~ 370 (857)
T PRK10865 321 -------------------------QYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLKER----YELHHHVQITDPAI 370 (857)
T ss_pred -------------------------HHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhhh----hccCCCCCcCHHHH
Confidence 2234699999999 68999999999999999866543 33445555555444
Q ss_pred hccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCcc----ccc--------cccchh----------hhh
Q 000978 797 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPD----ARL--------VLSCES----------IQY 854 (1203)
Q Consensus 797 ~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~----~kl--------~ls~~~----------l~~ 854 (1203)
.. ++.|...|+.++.+++++++.+...+....+.....|..- ..+ .+..+. +..
T Consensus 371 ~~----a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~ 446 (857)
T PRK10865 371 VA----AATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNE 446 (857)
T ss_pred HH----HHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 42 3567788888999999999988877776555433322100 000 000000 000
Q ss_pred hhhH-----------HHHHH----------HhhHhhh-----------------------------------------hc
Q 000978 855 GIGI-----------FQAIQ----------NESKSLK-----------------------------------------KS 872 (1203)
Q Consensus 855 al~~-----------lq~i~----------~~~k~~k-----------------------------------------~~ 872 (1203)
.+.. ++... .+..... ..
T Consensus 447 ~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (857)
T PRK10865 447 ELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRL 526 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 0000 00000 0000000 00
Q ss_pred ccccCCHHHHHHHHhcCcCCCCCCCcccc--------------cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCce
Q 000978 873 LKDVVTENEFEKRLLADVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG 938 (1203)
Q Consensus 873 ~k~~v~~~e~e~~ll~~ii~~~~~~vt~~--------------dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~g 938 (1203)
+...++.+++.. +++.++..+...+..+ .+.|++...+.+...+..... .-....+|...
T Consensus 527 ~~~~v~~~~i~~-vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~-----gl~~~~~p~~~ 600 (857)
T PRK10865 527 LRNKVTDAEIAE-VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA-----GLSDPNRPIGS 600 (857)
T ss_pred ccCccCHHHHHH-HHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh-----cccCCCCCCce
Confidence 012355666654 5666666655444333 466666666666655542100 00012345467
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCceEEEccch
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-----~~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID 1005 (1203)
+||+||+|||||++|++||..+ +.+++.++|+++.. ..+|.+..++ ..+....+..+.+|||||||+
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie 680 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE 680 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh
Confidence 9999999999999999999987 56799999987633 2344333222 123344455566999999999
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHhhcCCc-------ccCCccEEEEEecCCC-------------------------CC
Q 000978 1006 SMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------------------------FD 1053 (1203)
Q Consensus 1006 ~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------------------------~~ 1053 (1203)
.+ . ..+.+.|+..++... ..+-.+.+||+|||.. ..
T Consensus 681 ka-----~-------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (857)
T PRK10865 681 KA-----H-------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHN 748 (857)
T ss_pred hC-----C-------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccc
Confidence 76 2 234455555554321 1123567899999862 13
Q ss_pred CcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-------CCC---CchhHHHHHHHc--CCCcHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1054 Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~-------~l~---~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~a 1121 (1203)
+.|+|++|++.++.|.+++.+...+|++.++... ++. .+..++.|+... ..|..+.|+.+++.-...+
T Consensus 749 f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENP 828 (857)
T ss_pred ccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHH
Confidence 5578999999999999999999999998877542 222 222344455432 1233566666666555544
Q ss_pred HH
Q 000978 1122 IK 1123 (1203)
Q Consensus 1122 ir 1123 (1203)
+.
T Consensus 829 la 830 (857)
T PRK10865 829 LA 830 (857)
T ss_pred HH
Confidence 43
No 43
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-28 Score=266.72 Aligned_cols=245 Identities=36% Similarity=0.661 Sum_probs=217.4
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
....++|+.++|+..+..++++.+..|+..|++|.+.++ +||.++|||||||+|||.+|+++|..+|++|+.+..+++.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 334689999999999999999999999999999988774 5679999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc--hhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
++++|++.+.+++.|..|+.+.|||||+||||.+.+++.... ......+.+-+|+..|+++.. ..+|-+|+|||+|
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrp 281 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRP 281 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCc
Confidence 999999999999999999999999999999999998886543 234455666777788888744 5789999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.|+++++| |+++.+.+++|+...|..|++.+.+......+++.+++.+..+||.++|+++.|++|.+-++++.
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~---- 357 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE---- 357 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh----
Confidence 999999999 99999999999999999999998877777778899999999999999999999999998777642
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
...+.++||..++.++
T Consensus 358 ----------------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 ----------------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred ----------------------hHHHhHHHHHHHHHHH
Confidence 1236778888888776
No 44
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.3e-27 Score=290.95 Aligned_cols=267 Identities=35% Similarity=0.543 Sum_probs=223.7
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 969 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~ 969 (1203)
+..++|+++||++.++..|++.|..|+.+|+.|...++. |++||||+||||||||..|+++|..+ .+.|+.-..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 346889999999999999999999999999999988765 55999999999999999999999888 466777788
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 970 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 970 seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.|.... ...+..++.+||.+|+|+.. ++.|+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGlds--RgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDS--RGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCC--CCceEEEcccC
Confidence 8999999999999999999999999999999999999988875433 34556888999999999965 58999999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 000978 1050 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1126 (1203)
Q Consensus 1050 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~ 1126 (1203)
+++.+|++++| ||++.++|++|+.+.|.+|+..+..+..-. ...-+..||..+.||.|+||+.||.+|+..++++-.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 999999999999999999999987664422 345578899999999999999999999999988632
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccc
Q 000978 1127 EKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 1175 (1203)
Q Consensus 1127 ~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~ 1175 (1203)
-.... ...+.. -......|...||..|+..+.|+..+..
T Consensus 495 Pq~y~------s~~kl~----~d~~~ikV~~~~f~~A~~~i~ps~~R~~ 533 (1080)
T KOG0732|consen 495 PQIYS------SSDKLL----IDVALIKVEVRDFVEAMSRITPSSRRSS 533 (1080)
T ss_pred Ceeec------cccccc----ccchhhhhhhHhhhhhhhccCCCCCccc
Confidence 11110 000000 1112234889999999999998877653
No 45
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=8.1e-27 Score=298.43 Aligned_cols=207 Identities=21% Similarity=0.292 Sum_probs=168.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc----------cc------------------------
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW----------FG------------------------ 978 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~----------~G------------------------ 978 (1203)
.+|++||||+||||||||+||+|+|.++++||+.+++++++..+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36779999999999999999999999999999999999987643 11
Q ss_pred -------ccHH--HHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc-cCCccEEEEEec
Q 000978 979 -------EGEK--YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDTERILVLAAT 1048 (1203)
Q Consensus 979 -------~~e~--~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~-~~~~~VlVIaTT 1048 (1203)
..+. .++.+|+.|++.+||||||||||.+...... ...+++|+..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 1222 3788999999999999999999999654211 1246778888887632 234689999999
Q ss_pred CCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhh--CCCCC-chhHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 000978 1049 NRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAK--EDLSP-DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1203)
Q Consensus 1049 N~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~--~~l~~-d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~air 1123 (1203)
|+|+.||||++| ||++.|.|+.|+..+|++++..++.. ..+.. .++++.+|+.|.||+|+||.+||++|+..+++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999876533 33333 35789999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1124 EILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1124 el~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
+ ....|+++||+.|+.++.....
T Consensus 1860 q--------------------------~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206 1860 Q--------------------------KKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred c--------------------------CCCccCHHHHHHHHHHHHhhhh
Confidence 5 1235777888888877765543
No 46
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.8e-27 Score=269.00 Aligned_cols=259 Identities=28% Similarity=0.426 Sum_probs=211.5
Q ss_pred cccccHHHHHHHH-HHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccccccccc
Q 000978 902 DIGALENVKDTLK-ELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGE 979 (1203)
Q Consensus 902 dI~Gle~vk~~L~-e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~-~fi~I~~seL~s~~~G~ 979 (1203)
.|||++.-...+. +.......-|+...+.++ +..+|||||||||||||.+||.|.+.|++ +---++.++++++|+|+
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGe 300 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGE 300 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcc
Confidence 4789887765544 444545556777777774 55699999999999999999999999965 44557899999999999
Q ss_pred cHHHHHHHHHHHHhc--------CCceEEEccchhhccCCCCCch-hHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 980 GEKYVKAVFSLASKI--------APSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 980 ~e~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~~~~~-~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
+|.+++.+|..|..- .--||++||||.++.+|.+... ...+..++++||..|||... -.+++||+-||+
T Consensus 301 SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNILVIGMTNR 378 (744)
T KOG0741|consen 301 SEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNILVIGMTNR 378 (744)
T ss_pred cHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh--hhcEEEEeccCc
Confidence 999999999988533 2349999999999988876443 55678899999999999854 368999999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhC----CCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1051 p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~----~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
++.+|++++| ||...+++.+||...|.+|++.+.+++ .+..++|+++||.+|..|||++|..|+..|..-|+-|
T Consensus 379 ~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 379 KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNR 458 (744)
T ss_pred hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999887653 3568999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1125 ILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1125 l~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
.+....+... .....+...|+++||..|++.|+|.+...
T Consensus 459 ~vk~~~~~~~-----------~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 459 HVKAGGKVEV-----------DPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred hhccCcceec-----------CchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 7654311100 01112345799999999999999998644
No 47
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=1.9e-24 Score=245.15 Aligned_cols=189 Identities=20% Similarity=0.279 Sum_probs=157.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhc-----CCceEEEccchhh
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSM 1007 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L 1007 (1203)
.+++.+++||||||||||++|+++|++++++|+.++.++|.++|+|++|+.++++|..|+.. +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46779999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred ccCCCCCchhHHHHHH-HHHHHHhhcCCc----------ccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHH
Q 000978 1008 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1008 ~~~r~~~~~~~al~~i-l~eLL~~ldgl~----------~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~e 1074 (1203)
++++... ......++ ..+||..+|+.. .....+|+||+|||+|+.||++|+| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988632 23333444 478998888642 1335789999999999999999999 999865 589999
Q ss_pred HHHHHHHHHHhhCCCCCchhHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHH
Q 000978 1075 NRAKILQVILAKEDLSPDVDFDAIANMTDG----YSGSDLKNLCVTAAHRPIKEI 1125 (1203)
Q Consensus 1075 eR~eIL~~~l~~~~l~~d~dl~~LA~~T~G----~Sg~DL~~L~~~Aa~~airel 1125 (1203)
+|.+||+.++++.++. ..++..|+..+.| |.|+--..+...+....+.+.
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999988765 6888899988876 455555566666666555554
No 48
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.2e-25 Score=245.91 Aligned_cols=235 Identities=18% Similarity=0.280 Sum_probs=189.8
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
.-+|||++.... |..+..|.+++=.+|+|||++.-. =-..+++|||+|||| .++++||||.||+-+|.||=+=.
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~--GI~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEEL--GIDPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHc--CCCCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEecc
Confidence 346899998888 999999999999999999986321 235678999999999 89999999999999999986643
Q ss_pred ccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 000978 468 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 547 (1203)
Q Consensus 468 ~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 547 (1203)
| | |-+
T Consensus 219 S-----------E-----------------------lVq----------------------------------------- 223 (406)
T COG1222 219 S-----------E-----------------------LVQ----------------------------------------- 223 (406)
T ss_pred H-----------H-----------------------HHH-----------------------------------------
Confidence 2 1 221
Q ss_pred ccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccc
Q 000978 548 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 627 (1203)
Q Consensus 548 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 627 (1203)
||+|-
T Consensus 224 ----------KYiGE----------------------------------------------------------------- 228 (406)
T COG1222 224 ----------KYIGE----------------------------------------------------------------- 228 (406)
T ss_pred ----------HHhcc-----------------------------------------------------------------
Confidence 56661
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHH----hcC-----CCcEEEE
Q 000978 628 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVIVI 694 (1203)
Q Consensus 628 ~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~----~~~~~~~~lk~~L----~~l-----~g~V~vI 694 (1203)
.-++++.||+++.+ +.|+||||||||.+-+ .+......+|.+| ..+ .|+|-||
T Consensus 229 -----------GaRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 229 -----------GARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred -----------chHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 23489999999999 9999999999998665 2234455666555 333 5799999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 000978 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1203)
Q Consensus 695 Gst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~ 774 (1203)
.|||++|--||| |-|||| |+++|+|++|+.++|.+||++
T Consensus 295 ~ATNR~D~LDPA-------LLRPGR----------------------------------~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 295 MATNRPDILDPA-------LLRPGR----------------------------------FDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred EecCCccccChh-------hcCCCc----------------------------------ccceeecCCCCHHHHHHHHHH
Confidence 999999999999 899999 778999999999999999999
Q ss_pred hhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhh
Q 000978 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQY 854 (1203)
Q Consensus 775 ~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~ 854 (1203)
|..+ ..+..+++....+-.+.|++|+||+++|+++-++ |+ .+.+..++++||..
T Consensus 334 Htrk----M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~-----------Ai-----------R~~R~~Vt~~DF~~ 387 (406)
T COG1222 334 HTRK----MNLADDVDLELLARLTEGFSGADLKAICTEAGMF-----------AI-----------RERRDEVTMEDFLK 387 (406)
T ss_pred Hhhh----ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHH-----------HH-----------HhccCeecHHHHHH
Confidence 9966 4566777777788888999999999999987663 21 34566788888887
Q ss_pred hhhHH
Q 000978 855 GIGIF 859 (1203)
Q Consensus 855 al~~l 859 (1203)
|...+
T Consensus 388 Av~KV 392 (406)
T COG1222 388 AVEKV 392 (406)
T ss_pred HHHHH
Confidence 77643
No 49
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-21 Score=218.39 Aligned_cols=223 Identities=20% Similarity=0.279 Sum_probs=182.1
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 000978 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1203)
Q Consensus 375 ~~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1203)
+-+.|.+-|+. ++.+|.||+.=.. ++.|.+|.+|+..++..|+|++. +-..=++|||.|||| .+++|||||+
T Consensus 194 Lve~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~G---irrPWkgvLm~GPPG--TGKTlLAKAv 265 (491)
T KOG0738|consen 194 LVEALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKG---IRRPWKGVLMVGPPG--TGKTLLAKAV 265 (491)
T ss_pred HHHHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhh---cccccceeeeeCCCC--CcHHHHHHHH
Confidence 33444455553 4677999997777 99999999999999999999775 567788999999999 8999999999
Q ss_pred HhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000978 455 AHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKM 534 (1203)
Q Consensus 455 A~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1203)
|-+.|..|..|-|+.|
T Consensus 266 ATEc~tTFFNVSsstl---------------------------------------------------------------- 281 (491)
T KOG0738|consen 266 ATECGTTFFNVSSSTL---------------------------------------------------------------- 281 (491)
T ss_pred HHhhcCeEEEechhhh----------------------------------------------------------------
Confidence 9999977777665221
Q ss_pred cccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCC
Q 000978 535 ETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQ 614 (1203)
Q Consensus 535 ~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~ 614 (1203)
T Consensus 282 -------------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 282 -------------------------------------------------------------------------------- 281 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--CC---cchhhhHHHHHhcC-C
Q 000978 615 CEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--GN---SDSYSTFKSRLEKL-P 688 (1203)
Q Consensus 615 c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~--~~---~~~~~~lk~~L~~l-~ 688 (1203)
.|||-|| .+.+|+.||+.+.. ..|.+|||||||.+.+ |+ -++...||+.|.-. +
T Consensus 282 ---------------tSKwRGe--SEKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 282 ---------------TSKWRGE--SEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred ---------------hhhhccc--hHHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 1345566 88899999999999 9999999999999875 22 35556788777211 1
Q ss_pred ------Cc---EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEE
Q 000978 689 ------DK---VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 759 (1203)
Q Consensus 689 ------g~---V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~ 759 (1203)
.+ |+|+.|||.+-+ +|+||.|||+++|+
T Consensus 342 G~~~t~e~~k~VmVLAATN~PWd-------------------------------------------iDEAlrRRlEKRIy 378 (491)
T KOG0738|consen 342 GVQGTLENSKVVMVLAATNFPWD-------------------------------------------IDEALRRRLEKRIY 378 (491)
T ss_pred ccccccccceeEEEEeccCCCcc-------------------------------------------hHHHHHHHHhhhee
Confidence 24 999999999874 78889999999999
Q ss_pred EeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcccccc
Q 000978 760 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 760 I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
|+||+.++|...+++.|.. ......+++...+-...||+|+|+..+|.++.+.
T Consensus 379 IPLP~~~~R~~Li~~~l~~----~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~ 431 (491)
T KOG0738|consen 379 IPLPDAEARSALIKILLRS----VELDDPVNLEDLAERSEGYSGADITNVCREASMM 431 (491)
T ss_pred eeCCCHHHHHHHHHHhhcc----ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 9999999999999988743 6667778888888888899999999999987663
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-22 Score=236.43 Aligned_cols=251 Identities=24% Similarity=0.352 Sum_probs=202.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+...|..|++.+|+||||-++|.+....+. +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999755544 33
Q ss_pred hHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHH
Q 000978 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 1096 (1203)
Q Consensus 1017 ~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~ 1096 (1203)
...+...++.++. .+.. .....+++||+|++..+.+++.+++.|...|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333445555544 2222 2245789999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccccc
Q 000978 1097 AIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESV 1176 (1203)
Q Consensus 1097 ~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~ 1176 (1203)
.+|.+|.||+.+++..++..+...+..++.+......-+...++ .-...+..++++||.+|+.+++..++....
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~------~~~~~~~~l~~edf~kals~~~~~fs~aiG 662 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEG------ELCAAGFLLTEEDFDKALSRLQKEFSDAIG 662 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccc------ccccccceecHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999888754444444333210000000001 112345789999999999999999887766
Q ss_pred c-hhhhHHHHHHhcCCCcccc
Q 000978 1177 N-MSELLQWNELYGEGGSRRK 1196 (1203)
Q Consensus 1177 ~-~~~~v~W~di~G~~g~Rk~ 1196 (1203)
+ ..|.+.|+|+||++.+|+.
T Consensus 663 APKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred CCCCCccchhcccCHHHHHHH
Confidence 5 4699999999999998865
No 51
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.4e-20 Score=213.00 Aligned_cols=218 Identities=23% Similarity=0.295 Sum_probs=174.4
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
=+|.|++||.. +..|..|.+++..++-.++.+. +|.+.-+.|||.|||| -+++||+||+|-+.+|.|..+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHH
Confidence 35789999999 9999999999999999999843 6888899999999999 899999999999999988766543
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000978 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1203)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1203)
.|+
T Consensus 221 sLt----------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 221 SLT----------------------------------------------------------------------------- 223 (428)
T ss_pred Hhh-----------------------------------------------------------------------------
Confidence 322
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 000978 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1203)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1203)
T Consensus 224 -------------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 224 -------------------------------------------------------------------------------- 223 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc----chhhhHHHH--------HhcCCCcEEEEee
Q 000978 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS----DSYSTFKSR--------LEKLPDKVIVIGS 696 (1203)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~----~~~~~lk~~--------L~~l~g~V~vIGs 696 (1203)
+||+|| .+.+|.+||+|+.. .+|.|+||||||.+|..+. +..-.++.. ..+...+|+|||+
T Consensus 224 --sK~~Ge--~eK~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 224 --SKYVGE--SEKLVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred --hhccCh--HHHHHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 356666 57899999999999 9999999999999997221 111112211 1333569999999
Q ss_pred eccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 697 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 697 t~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
||++.. +|+++.|||...++|++|+.++|..+|+..|
T Consensus 297 TN~P~e-------------------------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll 333 (428)
T KOG0740|consen 297 TNRPWE-------------------------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLL 333 (428)
T ss_pred CCCchH-------------------------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHH
Confidence 999973 6888899999999999999999999999998
Q ss_pred hhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHH
Q 000978 777 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEK 823 (1203)
Q Consensus 777 e~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~ 823 (1203)
.+. .+.....++..++.+. -||++.|+.++|.++++-+...+..
T Consensus 334 ~~~-~~~l~~~d~~~l~~~T--egysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 334 KEQ-PNGLSDLDISLLAKVT--EGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred HhC-CCCccHHHHHHHHHHh--cCcccccHHHHHHHhhcCchhhccc
Confidence 875 2233335566655554 4999999999999998876554443
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=4.5e-19 Score=200.41 Aligned_cols=237 Identities=17% Similarity=0.243 Sum_probs=169.6
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccc
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 971 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P--~~gVLL~GPPGTGKT~LArALA~eL-------g~~fi~I~~se 971 (1203)
.+++|++++|+++++++.+ +.....+.+.+...+ ..++||+||||||||++|+++|+.+ ..+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3789999999999998876 333444444444333 3459999999999999999999876 23699999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
+.+.++|+.+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999988877778887764 489999999998643321 123355667777777653 3557788777642
Q ss_pred -----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHH----Hc--CCCc-HHHHHHHHHHHH
Q 000978 1052 -----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN----MT--DGYS-GSDLKNLCVTAA 1118 (1203)
Q Consensus 1052 -----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~----~T--~G~S-g~DL~~L~~~Aa 1118 (1203)
..++|++++||+.+|+|+.++.+++.+|++.++.+.... .+.....+.. .. ..|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 245699999999999999999999999999999876543 2222333332 22 3444 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHH
Q 000978 1119 HRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKY 1162 (1203)
Q Consensus 1119 ~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~ 1162 (1203)
.+...|++...... -+..+...++.+||.+
T Consensus 252 ~~~~~r~~~~~~~~--------------~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGRV--------------LTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCCC--------------CCHHHHhCCCHHHHhH
Confidence 88877765432100 0112456778888854
No 53
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=196.27 Aligned_cols=223 Identities=18% Similarity=0.254 Sum_probs=170.9
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 000978 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1203)
Q Consensus 375 ~~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1203)
++..|...|| -+.=+|-|++.-.. |..|.+|-+|++.++|.|.++...+ ..=++|||+|||| .++-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGkR---~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGKR---KPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCCC---CcceeEEEeCCCC--CcHHHHHHHH
Confidence 4445555555 46778999998888 9999999999999999999874433 2346899999999 8999999999
Q ss_pred HhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000978 455 AHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKM 534 (1203)
Q Consensus 455 A~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1203)
|-+-+..|..+.|
T Consensus 187 ATEAnSTFFSvSS------------------------------------------------------------------- 199 (439)
T KOG0739|consen 187 ATEANSTFFSVSS------------------------------------------------------------------- 199 (439)
T ss_pred HhhcCCceEEeeh-------------------------------------------------------------------
Confidence 9776543333322
Q ss_pred cccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCC
Q 000978 535 ETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQ 614 (1203)
Q Consensus 535 ~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~ 614 (1203)
T Consensus 200 -------------------------------------------------------------------------------- 199 (439)
T KOG0739|consen 200 -------------------------------------------------------------------------------- 199 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHHh-cC--
Q 000978 615 CEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLE-KL-- 687 (1203)
Q Consensus 615 c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~----~~~~~~~~lk~~L~-~l-- 687 (1203)
.|-.|||.|| .+.++..||+.+.+ +.|.||||||||.+.+ +-.++...+|..|. +.
T Consensus 200 ------------SDLvSKWmGE--SEkLVknLFemARe---~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 200 ------------SDLVSKWMGE--SEKLVKNLFEMARE---NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred ------------HHHHHHHhcc--HHHHHHHHHHHHHh---cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc
Confidence 2345789999 99999999999999 9999999999996444 33566667776662 22
Q ss_pred ----CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCC
Q 000978 688 ----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMP 763 (1203)
Q Consensus 688 ----~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lP 763 (1203)
...|+|+|+||.+-. +|.||.|||+.+|+|+||
T Consensus 263 VG~d~~gvLVLgATNiPw~-------------------------------------------LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWV-------------------------------------------LDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred cccCCCceEEEecCCCchh-------------------------------------------HHHHHHHHhhcceeccCC
Confidence 358999999998752 689999999999999999
Q ss_pred CHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 764 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 764 d~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
+..+|...++.++-.--+.+..+ ++. +..-.+-||+|+|+.-+..++.+
T Consensus 300 e~~AR~~MF~lhlG~tp~~LT~~-d~~--eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 300 EAHARARMFKLHLGDTPHVLTEQ-DFK--ELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred cHHHhhhhheeccCCCccccchh-hHH--HHHhhcCCCCcCceEEEehhhhh
Confidence 99999999998886543333332 333 33456779999999665554444
No 54
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-19 Score=212.06 Aligned_cols=237 Identities=22% Similarity=0.296 Sum_probs=189.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1012 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1012 (1203)
.+|||+||+|+|||.||+++++++ -+++..++|+.+....+....+.+..+|..+.+++|+||+||++|.|++...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 579999999999999999999988 4678889999998877777788899999999999999999999999998443
Q ss_pred CCch-hHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000978 1013 NPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1203)
Q Consensus 1013 ~~~~-~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l 1089 (1203)
+... .......+..++..+-....+.+..+.||||.+....|++.+.+ +|..++.++.|+..+|.+||+..+.+...
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~ 591 (952)
T KOG0735|consen 512 NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS 591 (952)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh
Confidence 3322 22233344444433333334456778999999999999998887 89999999999999999999999987653
Q ss_pred C-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1090 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1090 ~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
. ...|++.++..|+||...||..++.+|.+.++.+.... .. ..+|.++|.++++.+.
T Consensus 592 ~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~---------------------~~-klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 592 DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN---------------------GP-KLLTKELFEKSLKDFV 649 (952)
T ss_pred hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc---------------------Cc-ccchHHHHHHHHHhcC
Confidence 2 23455669999999999999999999999887432110 01 2699999999999999
Q ss_pred ccccccccchhhh-HHHHHHhcCCCccc
Q 000978 1169 ASVSSESVNMSEL-LQWNELYGEGGSRR 1195 (1203)
Q Consensus 1169 pS~s~e~~~~~~~-v~W~di~G~~g~Rk 1195 (1203)
|...++.....+- .+|.|++|....|+
T Consensus 650 P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 650 PLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred hHHhhhccccccCCCCceecccHHHHHH
Confidence 9988876654444 89999999987765
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=1.8e-18 Score=195.36 Aligned_cols=237 Identities=16% Similarity=0.232 Sum_probs=170.6
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 972 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~--P~~gVLL~GPPGTGKT~LArALA~eLg-------~~fi~I~~seL 972 (1203)
+++|++++|+++.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 44445555444432 456899999999999999999998772 37999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP- 1051 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p- 1051 (1203)
.+.++|..+..+..+|..|.. +||||||++.|.+.+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 989999988888888887744 89999999998643321 123345566677777643 3567788877642
Q ss_pred -C---CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHc------CC-CcHHHHHHHHHHHHH
Q 000978 1052 -F---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT------DG-YSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1052 -~---~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T------~G-~Sg~DL~~L~~~Aa~ 1119 (1203)
+ .+++++.+||...|+|+.++.+++..|++.++.+.... .+..+..+.... +. -++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999886543 223334444431 22 248999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHH
Q 000978 1120 RPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYA 1163 (1203)
Q Consensus 1120 ~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~A 1163 (1203)
+...|+...... .....++..++.+|+..+
T Consensus 252 ~~~~r~~~~~~~--------------~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLDR--------------VLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcCC--------------CCCHHHHhCCCHHHHhhc
Confidence 777766433110 001124567888887654
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.8e-18 Score=191.33 Aligned_cols=217 Identities=16% Similarity=0.234 Sum_probs=156.7
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM 969 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~--~P~~gVLL~GPPGTGKT~LArALA~eL-------g~~fi~I~~ 969 (1203)
.+++++|++++|+.+++++.+...... ..+.+.. ....++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 357899999999999998876543322 2222222 223579999999999999999999875 347889999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 970 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 970 seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
+++.+.++|+.+..++.+|..|. .+||||||+|.|.... ........++.|+..++.. ..++++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999988899988774 4899999999985321 1122245566677766653 34566666554
Q ss_pred CC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHc---------CCCcHHHHHHHH
Q 000978 1050 RP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT---------DGYSGSDLKNLC 1114 (1203)
Q Consensus 1050 ~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T---------~G~Sg~DL~~L~ 1114 (1203)
.. ..+++++++||+..|.|+.++.+++.+|++.++...... ++..+..|+... ..-.++.+++++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 246789999999899999999999999999999876543 233344443321 123578888988
Q ss_pred HHHHHHHHHHHHH
Q 000978 1115 VTAAHRPIKEILE 1127 (1203)
Q Consensus 1115 ~~Aa~~airel~~ 1127 (1203)
..|..+...+++.
T Consensus 232 e~a~~~~~~r~~~ 244 (261)
T TIGR02881 232 EKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777666543
No 57
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.6e-19 Score=202.95 Aligned_cols=238 Identities=22% Similarity=0.316 Sum_probs=176.5
Q ss_pred hcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCC
Q 000978 381 AGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 460 (1203)
Q Consensus 381 ~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a 460 (1203)
..|.+-+.++|+|++.=.- |..|..|-|-+- .||.|+ ||++==-..+++|||.|||| .+++|||||.|-+-|+
T Consensus 291 ~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhcccCC
Confidence 6677778889999996666 999999999876 577765 35554456789999999999 8999999999999999
Q ss_pred eEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 000978 461 KLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTL 540 (1203)
Q Consensus 461 ~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1203)
+|.-- .| . |+ +.
T Consensus 364 PFF~~-----sG-S-----EF-----------------------dE---------------------------------- 375 (752)
T KOG0734|consen 364 PFFYA-----SG-S-----EF-----------------------DE---------------------------------- 375 (752)
T ss_pred CeEec-----cc-c-----ch-----------------------hh----------------------------------
Confidence 87421 11 0 11 00
Q ss_pred cccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcc
Q 000978 541 TSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHG 620 (1203)
Q Consensus 541 ~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ 620 (1203)
-|||
T Consensus 376 -----------------m~VG----------------------------------------------------------- 379 (752)
T KOG0734|consen 376 -----------------MFVG----------------------------------------------------------- 379 (752)
T ss_pred -----------------hhhc-----------------------------------------------------------
Confidence 1233
Q ss_pred cccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC--CcchhhhHHHHH----hcC-----CC
Q 000978 621 FFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDSYSTFKSRL----EKL-----PD 689 (1203)
Q Consensus 621 ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~--~~~~~~~lk~~L----~~l-----~g 689 (1203)
+|| +-|+.||..+++ ..||||||||||.+=+. ..+.+ --+.+| ..+ +.
T Consensus 380 ----vGA-------------rRVRdLF~aAk~---~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNe 438 (752)
T KOG0734|consen 380 ----VGA-------------RRVRDLFAAAKA---RAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNE 438 (752)
T ss_pred ----ccH-------------HHHHHHHHHHHh---cCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCC
Confidence 222 248999999999 99999999999984332 22332 233333 333 34
Q ss_pred cEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHH
Q 000978 690 KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALL 769 (1203)
Q Consensus 690 ~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl 769 (1203)
.|+||||||++|+-|++ |.|||| |+.+|.|+.||..+|.
T Consensus 439 GiIvigATNfpe~LD~A-------L~RPGR----------------------------------FD~~v~Vp~PDv~GR~ 477 (752)
T KOG0734|consen 439 GIIVIGATNFPEALDKA-------LTRPGR----------------------------------FDRHVTVPLPDVRGRT 477 (752)
T ss_pred ceEEEeccCChhhhhHH-------hcCCCc----------------------------------cceeEecCCCCcccHH
Confidence 89999999999999999 999999 8899999999999999
Q ss_pred HHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccc
Q 000978 770 ASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSC 849 (1203)
Q Consensus 770 ~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~ 849 (1203)
+||+-+|.+ +....+++....+-.+.|++|+||..+ |..|+-++.. +....+++
T Consensus 478 eIL~~yl~k----i~~~~~VD~~iiARGT~GFsGAdLaNl---------------VNqAAlkAa~-------dga~~VtM 531 (752)
T KOG0734|consen 478 EILKLYLSK----IPLDEDVDPKIIARGTPGFSGADLANL---------------VNQAALKAAV-------DGAEMVTM 531 (752)
T ss_pred HHHHHHHhc----CCcccCCCHhHhccCCCCCchHHHHHH---------------HHHHHHHHHh-------cCcccccH
Confidence 999988854 666677877777788889999988554 4455444433 34556777
Q ss_pred hhhhhhhh
Q 000978 850 ESIQYGIG 857 (1203)
Q Consensus 850 ~~l~~al~ 857 (1203)
.+++.+..
T Consensus 532 ~~LE~akD 539 (752)
T KOG0734|consen 532 KHLEFAKD 539 (752)
T ss_pred HHHhhhhh
Confidence 77776554
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=2.6e-18 Score=206.11 Aligned_cols=228 Identities=18% Similarity=0.210 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHH
Q 000978 369 SLRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQE 448 (1203)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe 448 (1203)
..++|.+++. +++.-...+++|++...+ ++.|..|....-.+.. ....|+ + ..+++|||+|||| ++++
T Consensus 206 ~~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKT 273 (489)
T CHL00195 206 EEKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKS 273 (489)
T ss_pred HHHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHH
Confidence 3445555443 466666678899998887 9999988864432211 112233 2 5678999999999 9999
Q ss_pred HHHHHHHhHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCC
Q 000978 449 MLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGP 528 (1203)
Q Consensus 449 ~LakALA~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1203)
+||||+|++++++|+.+|.+.|++
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~-------------------------------------------------------- 297 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFG-------------------------------------------------------- 297 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcc--------------------------------------------------------
Confidence 999999999999999999855544
Q ss_pred CCCCcccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCC
Q 000978 529 ESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDG 608 (1203)
Q Consensus 529 ~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~ 608 (1203)
T Consensus 298 -------------------------------------------------------------------------------- 297 (489)
T CHL00195 298 -------------------------------------------------------------------------------- 297 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc-----chhhhHH--
Q 000978 609 VDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSYSTFK-- 681 (1203)
Q Consensus 609 ~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~-----~~~~~lk-- 681 (1203)
+|+|+ .+..++.+|+.+.. ..|+||||||||+++.+.. ...+.+.
T Consensus 298 -----------------------~~vGe--se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~ 349 (489)
T CHL00195 298 -----------------------GIVGE--SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT 349 (489)
T ss_pred -----------------------cccCh--HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHH
Confidence 12222 34468888988887 8999999999999886321 1122222
Q ss_pred --HHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEE
Q 000978 682 --SRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 759 (1203)
Q Consensus 682 --~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~ 759 (1203)
..|.....+|+|||+||+++..|++ |.|+|| |+..|+
T Consensus 350 lL~~l~~~~~~V~vIaTTN~~~~Ld~a-------llR~GR----------------------------------FD~~i~ 388 (489)
T CHL00195 350 FITWLSEKKSPVFVVATANNIDLLPLE-------ILRKGR----------------------------------FDEIFF 388 (489)
T ss_pred HHHHHhcCCCceEEEEecCChhhCCHH-------HhCCCc----------------------------------CCeEEE
Confidence 2223345789999999999987777 677777 889999
Q ss_pred EeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 760 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 760 I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
|++|+.++|.+||+.++.+.... ...+++....+-.+.||+|+||+.+|.++..
T Consensus 389 v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 389 LDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred eCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999998773321 1124555566667889999999998886644
No 59
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6e-18 Score=190.52 Aligned_cols=206 Identities=27% Similarity=0.453 Sum_probs=162.6
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 978 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G 978 (1203)
.|++++....++..|+.+....-. . .....|.++||||||||||||++|+-||...|..+-.+...++.- +-.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaN-----T-K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATAN-----T-KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcc-----c-ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 377788788888888776653111 1 112446789999999999999999999999999988888777632 222
Q ss_pred ccHHHHHHHHHHHHhcCCc-eEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHH
Q 000978 979 EGEKYVKAVFSLASKIAPS-VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1057 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1057 (1203)
+.-..|+++|+.|.+...+ +|||||.|.++..|....-.++.+..+|.||..-.. ....++++.+||+|.+||.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHH
Confidence 3456789999999988766 678999999999988777788889999998743322 24678889999999999999
Q ss_pred HHhcccccccCCCCCHHHHHHHHHHHHhhCCCC---------------------------CchhHHHHHHHcCCCcHHHH
Q 000978 1058 VIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS---------------------------PDVDFDAIANMTDGYSGSDL 1110 (1203)
Q Consensus 1058 LlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~---------------------------~d~dl~~LA~~T~G~Sg~DL 1110 (1203)
+..||+.+|+|++|..++|.++|..++.+.-+. .+.-+.+.|..|+||||++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 999999999999999999999999988753211 01125678999999999999
Q ss_pred HHHHH
Q 000978 1111 KNLCV 1115 (1203)
Q Consensus 1111 ~~L~~ 1115 (1203)
..|+.
T Consensus 582 akLva 586 (630)
T KOG0742|consen 582 AKLVA 586 (630)
T ss_pred HHHHH
Confidence 98864
No 60
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-17 Score=205.52 Aligned_cols=332 Identities=20% Similarity=0.214 Sum_probs=201.3
Q ss_pred cCCCeEEEEcchhhhhc-C----CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccC
Q 000978 655 RSCPFILFMKDAEKSIA-G----NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAF 729 (1203)
Q Consensus 655 ~~~p~Ilfiddi~~~l~-~----~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al 729 (1203)
..+.+||||||+|-+++ | .+++.++|+++|.+ |.+-+||+||..+|+
T Consensus 278 ~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y~-------------------------- 329 (898)
T KOG1051|consen 278 GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETYR-------------------------- 329 (898)
T ss_pred CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHHH--------------------------
Confidence 36899999999998776 3 45899999999965 889999999988763
Q ss_pred CCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccch
Q 000978 730 PDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETL 809 (1203)
Q Consensus 730 ~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~L 809 (1203)
++.+.|.+|.||| +.+.|..|..+....||....++ +.++|-.....+.....+.+...
T Consensus 330 ------------k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~--------~e~~hg~~~s~~a~~~a~~~s~~ 388 (898)
T KOG1051|consen 330 ------------KCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSER--------YEVHHGVRISDESLFSAAQLSAR 388 (898)
T ss_pred ------------HHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhh--------hccccCCcccccccccccchhhh
Confidence 3445689999999 89999999999988888865543 22333333344556677788888
Q ss_pred hccccccchHHHHHHHHHHHhhhhhcCCCCC--ccccccccchhhhhhhhHHHHHHH-----------------------
Q 000978 810 CIRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCESIQYGIGIFQAIQN----------------------- 864 (1203)
Q Consensus 810 ci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~--~~~kl~ls~~~l~~al~~lq~i~~----------------------- 864 (1203)
++....++..+++..-..++...+.....|. .+....... +...+..++.-.+
T Consensus 389 ~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~--~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~ 466 (898)
T KOG1051|consen 389 YITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIK--LQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLS 466 (898)
T ss_pred hcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhh--hHHHHHHHHHhhhhhhccccccccccccccccccch
Confidence 8888888888777766666655543333332 100000000 0111111111000
Q ss_pred ----hhHhhhhcc---cccCCHH---------------------------------------HHHHHHhcCcCCCCCCCc
Q 000978 865 ----ESKSLKKSL---KDVVTEN---------------------------------------EFEKRLLADVIPPSDIGV 898 (1203)
Q Consensus 865 ----~~k~~k~~~---k~~v~~~---------------------------------------e~e~~ll~~ii~~~~~~v 898 (1203)
..++....+ +...... ++.. +...++..+....
T Consensus 467 ~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~-~~s~~tgip~~~~ 545 (898)
T KOG1051|consen 467 ASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISE-VVSRWTGIPVDRL 545 (898)
T ss_pred hhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhh-hhhhhcCCchhhh
Confidence 000000000 0000000 0000 1111111111111
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhh------cCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFC------KGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINI 967 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~------k~~~~~--P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I 967 (1203)
+-.+-.-+..+.+.|.+.|.++........ +.++.+ |...+||.||.|+|||-||+++|..+ .-.|+.+
T Consensus 546 ~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri 625 (898)
T KOG1051|consen 546 AEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL 625 (898)
T ss_pred hhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe
Confidence 111111223333444455544433332221 233344 67889999999999999999999998 4679999
Q ss_pred ecccc--ccccccccHHH-----HHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccC--
Q 000978 968 SMSSI--TSKWFGEGEKY-----VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-- 1038 (1203)
Q Consensus 968 ~~seL--~s~~~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~-- 1038 (1203)
+|+++ +++..|.+..| ..++.+..++.+.+||+||||| .++..+++.|++.+|.....+
T Consensus 626 Dmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE------------kAh~~v~n~llq~lD~GrltDs~ 693 (898)
T KOG1051|consen 626 DMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE------------KAHPDVLNILLQLLDRGRLTDSH 693 (898)
T ss_pred chhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh------------hcCHHHHHHHHHHHhcCccccCC
Confidence 99875 23444444333 4578888899999999999999 344677787888887665543
Q ss_pred -----CccEEEEEecCC
Q 000978 1039 -----TERILVLAATNR 1050 (1203)
Q Consensus 1039 -----~~~VlVIaTTN~ 1050 (1203)
-.+++||+|+|.
T Consensus 694 Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 694 GREVDFKNAIFIMTSNV 710 (898)
T ss_pred CcEeeccceEEEEeccc
Confidence 368999999875
No 61
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.76 E-value=2.6e-18 Score=201.91 Aligned_cols=236 Identities=14% Similarity=0.228 Sum_probs=176.2
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCccccc-ccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 000978 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1203)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1203)
-+.-+|+|+++..+ |..|..|.+++-.+|+++++.+ ++ + ..+++|||+|||| +++++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 35678999999988 9999999999999999998753 33 2 4578999999999 99999999999999988877
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000978 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1203)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1203)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 65322111
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 000978 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1203)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1203)
T Consensus 218 -------------------------------------------------------------------------------- 217 (398)
T PTZ00454 218 -------------------------------------------------------------------------------- 217 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------chhhhHHHHHhcC-----CCcE
Q 000978 625 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL-----PDKV 691 (1203)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~--------~~~~~lk~~L~~l-----~g~V 691 (1203)
+|+++ ....++.+|+.+.. .+|+||||||||.++..+. +....+...|..+ .++|
T Consensus 218 -------k~~ge--~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 218 -------KYLGE--GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred -------Hhcch--hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 11122 23457888888887 8999999999999875321 1222333344333 3589
Q ss_pred EEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHH
Q 000978 692 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 771 (1203)
Q Consensus 692 ~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~I 771 (1203)
+||++||+++..||+ |.|||| |+.+|+|++|+.++|..|
T Consensus 286 ~VI~aTN~~d~LDpA-------llR~GR----------------------------------fd~~I~~~~P~~~~R~~I 324 (398)
T PTZ00454 286 KVIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLI 324 (398)
T ss_pred EEEEecCCchhCCHH-------HcCCCc----------------------------------ccEEEEeCCcCHHHHHHH
Confidence 999999999988888 677888 888999999999999999
Q ss_pred HHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchh
Q 000978 772 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCES 851 (1203)
Q Consensus 772 lk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~ 851 (1203)
|+.++.+ .....+++....+..+.||+|+||..+|.++.+ .++. .....|+.++
T Consensus 325 l~~~~~~----~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~---------------~A~r-------~~~~~i~~~d 378 (398)
T PTZ00454 325 FQTITSK----MNLSEEVDLEDFVSRPEKISAADIAAICQEAGM---------------QAVR-------KNRYVILPKD 378 (398)
T ss_pred HHHHHhc----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH---------------HHHH-------cCCCccCHHH
Confidence 9988754 234455666666778889999999999886543 1111 1234678888
Q ss_pred hhhhhhHH
Q 000978 852 IQYGIGIF 859 (1203)
Q Consensus 852 l~~al~~l 859 (1203)
|..++...
T Consensus 379 f~~A~~~v 386 (398)
T PTZ00454 379 FEKGYKTV 386 (398)
T ss_pred HHHHHHHH
Confidence 88777643
No 62
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.6e-18 Score=189.63 Aligned_cols=193 Identities=28% Similarity=0.403 Sum_probs=151.2
Q ss_pred CCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CC
Q 000978 892 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GA 962 (1203)
Q Consensus 892 ~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---------g~ 962 (1203)
|..+..--|+.++--.++|+.|..++...+...+.-....+..-.+=|||+||||||||+|++|+|+.+ ..
T Consensus 133 Pa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~ 212 (423)
T KOG0744|consen 133 PAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKG 212 (423)
T ss_pred cchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccc
Confidence 333344457777777889999998887655444332222322333459999999999999999999998 35
Q ss_pred cEEEEeccccccccccccHHHHHHHHHHHHhcC---C--ceEEEccchhhccCCCC---CchhHHHHHHHHHHHHhhcCC
Q 000978 963 NFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVIFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGL 1034 (1203)
Q Consensus 963 ~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~~---~~~~~al~~il~eLL~~ldgl 1034 (1203)
.++.+++..++++|++++.+.+.++|......- . -.++|||++.|...|.. ..+....-++++.+|+++|.+
T Consensus 213 ~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl 292 (423)
T KOG0744|consen 213 QLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL 292 (423)
T ss_pred eEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Confidence 689999999999999999999999998775442 2 25569999999866632 122233357889999999998
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000978 1035 RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1035 ~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
.. ..+|++++|+|-.+.+|.++..|-|-+.++++|+...|.+|++..+..
T Consensus 293 K~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 293 KR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred cc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 54 578999999999999999999999999999999999999999988764
No 63
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=4.1e-18 Score=167.96 Aligned_cols=130 Identities=38% Similarity=0.648 Sum_probs=115.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcC-CceEEEccchhhccCCCCCchh
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEH 1017 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~ 1017 (1203)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..+.+.. |+||||||+|.++... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999887 9999999999998776 33445
Q ss_pred HHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHH-hcccccccCCC
Q 000978 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI-RRLPRRLMVNL 1070 (1203)
Q Consensus 1018 ~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl-rRFd~~I~v~~ 1070 (1203)
.....+++.|+..++..... ..+++||+|||.++.+++.++ +||+.+|++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56677888888888887543 467999999999999999999 99999988763
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=8.1e-18 Score=197.91 Aligned_cols=236 Identities=19% Similarity=0.287 Sum_probs=174.1
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCccccc-ccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 000978 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1203)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1203)
+..+++|++++.+ |..+..|.+.+..+|+++++.+ ++ ...+++|||+|||| +++++||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4457899999888 9999999999999999998753 32 24457899999999 999999999999999988877
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000978 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1203)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1203)
+.+.|..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 6533321
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 000978 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1203)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1203)
+|+
T Consensus 204 ------------~~~----------------------------------------------------------------- 206 (389)
T PRK03992 204 ------------KFI----------------------------------------------------------------- 206 (389)
T ss_pred ------------hhc-----------------------------------------------------------------
Confidence 111
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcC-----CCcEE
Q 000978 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVI 692 (1203)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~~~~~lk~~L~~l-----~g~V~ 692 (1203)
++ ....++.+|+.+.. ..|.||||||||.++..+ .+....+...|..+ .++|+
T Consensus 207 ---------g~--~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 207 ---------GE--GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred ---------cc--hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 11 23357888888887 899999999999987521 12222233333333 25899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000978 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1203)
Q Consensus 693 vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Il 772 (1203)
|||+||+++..|++ |.|||| |+..|+|++|+.++|.+||
T Consensus 273 VI~aTn~~~~ld~a-------llRpgR----------------------------------fd~~I~v~~P~~~~R~~Il 311 (389)
T PRK03992 273 IIAATNRIDILDPA-------ILRPGR----------------------------------FDRIIEVPLPDEEGRLEIL 311 (389)
T ss_pred EEEecCChhhCCHH-------HcCCcc----------------------------------CceEEEECCCCHHHHHHHH
Confidence 99999999877777 667777 8889999999999999999
Q ss_pred HHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhh
Q 000978 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 852 (1203)
Q Consensus 773 k~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l 852 (1203)
+.++.. .....+++....+..+.||+|+||..+|.++.+. ++.. ....|+.++|
T Consensus 312 ~~~~~~----~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~---------------a~~~-------~~~~i~~~d~ 365 (389)
T PRK03992 312 KIHTRK----MNLADDVDLEELAELTEGASGADLKAICTEAGMF---------------AIRD-------DRTEVTMEDF 365 (389)
T ss_pred HHHhcc----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHH---------------HHHc-------CCCCcCHHHH
Confidence 987754 3344456666677788899999999998865431 1111 2335788888
Q ss_pred hhhhhHHH
Q 000978 853 QYGIGIFQ 860 (1203)
Q Consensus 853 ~~al~~lq 860 (1203)
..|+..++
T Consensus 366 ~~A~~~~~ 373 (389)
T PRK03992 366 LKAIEKVM 373 (389)
T ss_pred HHHHHHHh
Confidence 87776543
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.72 E-value=5.1e-17 Score=174.99 Aligned_cols=148 Identities=16% Similarity=0.246 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCC-----CcEEEEeeeccCCCccccC
Q 000978 639 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKEKS 707 (1203)
Q Consensus 639 ~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~------~~~~~~~~lk~~L~~l~-----g~V~vIGst~~~d~~~~~~ 707 (1203)
.-+.|..||+-+.+ ..|||+||||+|.+.. -+.|....+-..|..++ ..|+-|||||+++-
T Consensus 195 gar~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~----- 266 (368)
T COG1223 195 GARRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL----- 266 (368)
T ss_pred HHHHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh-----
Confidence 34579999999999 9999999999998764 23445555555554444 38999999999972
Q ss_pred CCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccC
Q 000978 708 HPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKG 787 (1203)
Q Consensus 708 ~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~ 787 (1203)
+|.++..||+.+|++.||++|+|+.|+..-.+ ++.+..
T Consensus 267 --------------------------------------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k----~~Plpv 304 (368)
T COG1223 267 --------------------------------------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAK----KFPLPV 304 (368)
T ss_pred --------------------------------------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHH----hCCCcc
Confidence 46778889999999999999999999986664 445555
Q ss_pred CchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhh
Q 000978 788 NLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 857 (1203)
Q Consensus 788 N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~ 857 (1203)
+.+....+..+.|++|.|+.+ +++..|+.+++. +..-.+..++++.++.
T Consensus 305 ~~~~~~~~~~t~g~SgRdike--------------kvlK~aLh~Ai~-------ed~e~v~~edie~al~ 353 (368)
T COG1223 305 DADLRYLAAKTKGMSGRDIKE--------------KVLKTALHRAIA-------EDREKVEREDIEKALK 353 (368)
T ss_pred ccCHHHHHHHhCCCCchhHHH--------------HHHHHHHHHHHH-------hchhhhhHHHHHHHHH
Confidence 555566677888999999855 455566655544 2344566666666555
No 66
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.70 E-value=3.6e-17 Score=193.71 Aligned_cols=233 Identities=17% Similarity=0.255 Sum_probs=171.4
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 000978 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1203)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1203)
.+||++...+ +..+..|.+++-.+|.|+++.+... + ..+++|||+|||| +++++||||+|+++++.++-++.+.
T Consensus 179 ~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g-i-~~p~gVLL~GPPG--TGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 179 LESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG-I-KPPKGVILYGPPG--TGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC-C-CCCcEEEEECCCC--CCHHHHHHHHHHhhCCCEEEEecch
Confidence 4678887666 9999999999999999998753221 2 3567899999999 9999999999999988887665433
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 000978 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1203)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1203)
|.+
T Consensus 253 L~~----------------------------------------------------------------------------- 255 (438)
T PTZ00361 253 LIQ----------------------------------------------------------------------------- 255 (438)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 221
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 000978 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1203)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1203)
T Consensus 256 -------------------------------------------------------------------------------- 255 (438)
T PTZ00361 256 -------------------------------------------------------------------------------- 255 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcC-----CCcEEEEee
Q 000978 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIVIGS 696 (1203)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~~~~~lk~~L~~l-----~g~V~vIGs 696 (1203)
+|.++ ....+..+|+.+.. ..|+||||||||.++..+ .+....+...|..+ .++|.||++
T Consensus 256 --k~~Ge--~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~A 328 (438)
T PTZ00361 256 --KYLGD--GPKLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMA 328 (438)
T ss_pred --hhcch--HHHHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEe
Confidence 11112 23468888988887 899999999999987522 22223334444333 458999999
Q ss_pred eccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 697 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 697 t~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
||+.+..|++ |.|||| |+.+|+|++|+.++|.+||+.++
T Consensus 329 TNr~d~LDpa-------LlRpGR----------------------------------fd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 329 TNRIESLDPA-------LIRPGR----------------------------------IDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred cCChHHhhHH-------hccCCe----------------------------------eEEEEEeCCCCHHHHHHHHHHHH
Confidence 9999877777 667777 77899999999999999999887
Q ss_pred hhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhh
Q 000978 777 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGI 856 (1203)
Q Consensus 777 e~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al 856 (1203)
.+ .....+++....+..+.+++|+||+.+|.++.++ ++. .....|+.++|..|+
T Consensus 368 ~k----~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~---------------Alr-------~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 368 SK----MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLL---------------ALR-------ERRMKVTQADFRKAK 421 (438)
T ss_pred hc----CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHH---------------HHH-------hcCCccCHHHHHHHH
Confidence 55 3344566666777788899999999988864331 111 123457888888777
Q ss_pred hHH
Q 000978 857 GIF 859 (1203)
Q Consensus 857 ~~l 859 (1203)
...
T Consensus 422 ~~v 424 (438)
T PTZ00361 422 EKV 424 (438)
T ss_pred HHH
Confidence 643
No 67
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-17 Score=181.92 Aligned_cols=211 Identities=18% Similarity=0.309 Sum_probs=165.8
Q ss_pred ccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccc
Q 000978 391 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 470 (1203)
Q Consensus 391 vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~ 470 (1203)
.||.+.... |+..+.+-+++-.+|.|||+.. .-=...++++.|+|+|| .+++.||||.|+.-.|.||-+=-|
T Consensus 182 Ety~diGGl--e~QiQEiKEsvELPLthPE~Ye--emGikpPKGVIlyG~PG--TGKTLLAKAVANqTSATFlRvvGs-- 253 (440)
T KOG0726|consen 182 ETYADIGGL--ESQIQEIKESVELPLTHPEYYE--EMGIKPPKGVILYGEPG--TGKTLLAKAVANQTSATFLRVVGS-- 253 (440)
T ss_pred hhhcccccH--HHHHHHHHHhhcCCCCCHHHHH--HcCCCCCCeeEEeCCCC--CchhHHHHHHhcccchhhhhhhhH--
Confidence 468888887 9999999999999999999952 22245788999999999 899999999999988887644221
Q ss_pred cCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 000978 471 LGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNHM 550 (1203)
Q Consensus 471 ~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 550 (1203)
+|.+
T Consensus 254 --------------------------------eLiQ-------------------------------------------- 257 (440)
T KOG0726|consen 254 --------------------------------ELIQ-------------------------------------------- 257 (440)
T ss_pred --------------------------------HHHH--------------------------------------------
Confidence 2221
Q ss_pred cccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccccc
Q 000978 551 LRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLRL 630 (1203)
Q Consensus 551 ~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~l 630 (1203)
||.| +
T Consensus 258 -------kylG----------d---------------------------------------------------------- 262 (440)
T KOG0726|consen 258 -------KYLG----------D---------------------------------------------------------- 262 (440)
T ss_pred -------HHhc----------c----------------------------------------------------------
Confidence 3343 0
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhhHHHHHhcC-----CCcEEEEeee
Q 000978 631 ENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----PDKVIVIGSH 697 (1203)
Q Consensus 631 ~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~--------~~~~~~~~lk~~L~~l-----~g~V~vIGst 697 (1203)
.-++++.||.|+.+ +.|.|+||||||.+=. |..++-...-..|.+| +|.|-||-||
T Consensus 263 --------GpklvRqlF~vA~e---~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimAT 331 (440)
T KOG0726|consen 263 --------GPKLVRELFRVAEE---HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMAT 331 (440)
T ss_pred --------chHHHHHHHHHHHh---cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEec
Confidence 22479999999999 9999999999998443 2223333333334444 5799999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 698 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 698 ~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
|+.+.-||+ |-|||| .+++|++++||+..+.+|+.+|+.
T Consensus 332 nrie~LDPa-------LiRPGr----------------------------------IDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 332 NRIETLDPA-------LIRPGR----------------------------------IDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred ccccccCHh-------hcCCCc----------------------------------cccccccCCCchhhhceeEEEeec
Confidence 999999999 999999 457999999999999999999987
Q ss_pred hhhhhhhccCCchhHHHHhhccCCCcccccchhcccccc
Q 000978 778 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 778 ~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
+ ..+..++++...+.....++|+|++++|+++-++
T Consensus 371 ~----Mtl~~dVnle~li~~kddlSGAdIkAictEaGll 405 (440)
T KOG0726|consen 371 R----MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLL 405 (440)
T ss_pred c----cchhccccHHHHhhcccccccccHHHHHHHHhHH
Confidence 6 3456677777777788899999999999987553
No 68
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.9e-16 Score=188.24 Aligned_cols=248 Identities=38% Similarity=0.572 Sum_probs=213.8
Q ss_pred ccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceE
Q 000978 920 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVI 999 (1203)
Q Consensus 920 pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsIL 999 (1203)
++..++.+...+ ..++.+++++||||+|||.+++++|.+ +..+..++.+++.+++.|..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 445566665555 456699999999999999999999999 766688888999999999999999999999999999999
Q ss_pred EEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHH
Q 000978 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRA 1077 (1203)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~ 1077 (1203)
++|+++.+.+.+.. ........+..+++..++++. ... +++++.+|.+..+++++++ ||+..+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988866 555667788999999999987 445 9999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccH
Q 000978 1078 KILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNM 1157 (1203)
Q Consensus 1078 eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~ 1157 (1203)
+|+...........+.+...++..+.||+++++..+|..+...++++.. ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999988777777788999999999999999999999999988887643 00112356899
Q ss_pred HHHHHHHHHhcccccccccchhhhHHHHHHhcCCCccc
Q 000978 1158 DDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1195 (1203)
Q Consensus 1158 eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~Rk 1195 (1203)
+||.++++.+.++ .+.....+.+.|.+++|++..+.
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 9999999999998 56566778999999999887765
No 69
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.68 E-value=1.5e-16 Score=205.55 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=101.0
Q ss_pred CcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcc--hhhhHHHHHhcC-----CCcEEEEeeeccCCCcccc
Q 000978 634 GTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--SYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEK 706 (1203)
Q Consensus 634 ~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~--~~~~lk~~L~~l-----~g~V~vIGst~~~d~~~~~ 706 (1203)
+++.....-|+.+|+.|.. ..|+||||||||.+-....+ ..+.|...|+.. ..+|+||||||++|..|||
T Consensus 1712 m~~~e~~~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPA 1788 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPA 1788 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHh
Confidence 3443334459999999999 99999999999996553221 234444445422 3479999999999999999
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhcc
Q 000978 707 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 786 (1203)
Q Consensus 707 ~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~ 786 (1203)
|.|||| |++.|+|++|+..+|.+++..++.. +.+.+.
T Consensus 1789 -------LLRPGR----------------------------------FDR~I~Ir~Pd~p~R~kiL~ILl~t--kg~~L~ 1825 (2281)
T CHL00206 1789 -------LIAPNK----------------------------------LNTCIKIRRLLIPQQRKHFFTLSYT--RGFHLE 1825 (2281)
T ss_pred -------HcCCCC----------------------------------CCeEEEeCCCCchhHHHHHHHHHhh--cCCCCC
Confidence 999999 8889999999999999998865421 223333
Q ss_pred CC-chhHHHHhhccCCCcccccchhcccccc
Q 000978 787 GN-LNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 787 ~N-~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
.+ ++..+.+-.|.|++|+||..+|.+|++.
T Consensus 1826 ~~~vdl~~LA~~T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1826 KKMFHTNGFGSITMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 22 3445567788999999999998876553
No 70
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-16 Score=195.80 Aligned_cols=215 Identities=21% Similarity=0.345 Sum_probs=169.4
Q ss_pred CCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 000978 385 DGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1203)
Q Consensus 385 ~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1203)
+-.++.|+|+|+=.- |..|..|.|-+- .||+|+. |.+-=.-.++++||+|||| ++++.||||.|-+.|++|+.
T Consensus 302 ~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~s 374 (774)
T KOG0731|consen 302 NEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFS 374 (774)
T ss_pred cCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceee
Confidence 367888999998877 999999999876 7999875 4433356789999999999 99999999999999999998
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000978 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1203)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1203)
+-.+.|- |.
T Consensus 375 vSGSEFv--------E~--------------------------------------------------------------- 383 (774)
T KOG0731|consen 375 VSGSEFV--------EM--------------------------------------------------------------- 383 (774)
T ss_pred echHHHH--------HH---------------------------------------------------------------
Confidence 7653332 10
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 000978 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1203)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1203)
|+|.
T Consensus 384 --------------~~g~-------------------------------------------------------------- 387 (774)
T KOG0731|consen 384 --------------FVGV-------------------------------------------------------------- 387 (774)
T ss_pred --------------hccc--------------------------------------------------------------
Confidence 1110
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---------CCcchhhhHHHHHhcCC-----Cc
Q 000978 625 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRLEKLP-----DK 690 (1203)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~---------~~~~~~~~lk~~L~~l~-----g~ 690 (1203)
| --.++.||..+.. ..|+||||||||.+-+ ++.+.-..|--.|-.++ +.
T Consensus 388 -~-------------asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 388 -G-------------ASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -c-------------hHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 0 0048899999999 9999999999997543 34444444544443333 58
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHH
Q 000978 691 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 770 (1203)
Q Consensus 691 V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~ 770 (1203)
|+||++||++|-.|++ |+|||| |+++|.|.+|+..+|.+
T Consensus 451 vi~~a~tnr~d~ld~a-------llrpGR----------------------------------fdr~i~i~~p~~~~r~~ 489 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPA-------LLRPGR----------------------------------FDRQIQIDLPDVKGRAS 489 (774)
T ss_pred EEEEeccCCccccCHH-------hcCCCc----------------------------------cccceeccCCchhhhHH
Confidence 9999999999989999 999999 88899999999999999
Q ss_pred HHHHhhhhhhhhhhc-cCCchhHHHHhhccCCCcccccchhccccc
Q 000978 771 SWKHQLDRDSETLKM-KGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 771 Ilk~~Le~~~e~l~~-~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
|++.|+.. +++ .+.+++...+..+.|+.|+||..+|-++++
T Consensus 490 i~~~h~~~----~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 490 ILKVHLRK----KKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL 531 (774)
T ss_pred HHHHHhhc----cCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH
Confidence 99999865 333 456666667888999999999999887654
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=2.4e-16 Score=169.82 Aligned_cols=195 Identities=23% Similarity=0.301 Sum_probs=121.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|+|++|+++++..++-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++.+.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 37999999999999988766531111 234568999999999999999999999999999888754321
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH-hhcCCccc------CCccEEEEEecCC
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DTERILVLAATNR 1050 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~-~ldgl~~~------~~~~VlVIaTTN~ 1050 (1203)
..-+..++.... ...|||||||++| +...++.+...++.+.. .+-|.... +-.++.+|++|++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122333333322 4579999999988 33333333333332211 11111100 1146889999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~ 1115 (1203)
...|...++.||..+..+..++.++..+|++......++. .+....+||+++.| +++--.+|++
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 9999999999999888999999999999999877766665 44557899999998 5554444444
No 72
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.67 E-value=5.2e-16 Score=186.33 Aligned_cols=219 Identities=21% Similarity=0.272 Sum_probs=154.0
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 000978 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1203)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1203)
-+.-+++|++...+ +..+..|.+++-..+.|+++. +|+ + ..+++|||+|||| +++++||||+|++++.++..
T Consensus 174 ~~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l-~~p~GILLyGPPG--TGKT~LAKAlA~eL~~~i~~ 246 (512)
T TIGR03689 174 EEVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--L-KPPKGVLLYGPPG--CGKTLIAKAVANSLAQRIGA 246 (512)
T ss_pred ecCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--C-CCCcceEEECCCC--CcHHHHHHHHHHhhcccccc
Confidence 45557999997777 899999999999999999875 454 3 3467899999999 89999999999998654431
Q ss_pred eecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000978 465 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 544 (1203)
Q Consensus 465 ~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1203)
. .+
T Consensus 247 --~---~~------------------------------------------------------------------------ 249 (512)
T TIGR03689 247 --E---TG------------------------------------------------------------------------ 249 (512)
T ss_pred --c---cC------------------------------------------------------------------------
Confidence 0 00
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccc
Q 000978 545 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 624 (1203)
Q Consensus 545 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 624 (1203)
.+..| +.-
T Consensus 250 ----------~~~~f--------------------------------------------------------------l~v 257 (512)
T TIGR03689 250 ----------DKSYF--------------------------------------------------------------LNI 257 (512)
T ss_pred ----------CceeE--------------------------------------------------------------Eec
Confidence 00000 001
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhc-cCCCeEEEEcchhhhhcC-----CcchhhhHHHHH----hcC--CCcEE
Q 000978 625 VTDLRLENSGTEDLDKLLINTLFEVVFSES-RSCPFILFMKDAEKSIAG-----NSDSYSTFKSRL----EKL--PDKVI 692 (1203)
Q Consensus 625 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~-~~~p~Ilfiddi~~~l~~-----~~~~~~~lk~~L----~~l--~g~V~ 692 (1203)
.+...+++|+++ .+..++.+|+.+.+.+ ...|+||||||+|.++.. +.+....+.+.| +.+ .++|+
T Consensus 258 ~~~eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 258 KGPELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred cchhhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 122345567777 6678889999887643 357999999999998852 223322333333 222 26899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000978 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1203)
Q Consensus 693 vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Il 772 (1203)
|||+||+++..||+ |.|||| |+.+|+|++|+.++|.+||
T Consensus 336 VI~ATN~~d~LDpA-------LlRpGR----------------------------------fD~~I~~~~Pd~e~r~~Il 374 (512)
T TIGR03689 336 VIGASNREDMIDPA-------ILRPGR----------------------------------LDVKIRIERPDAEAAADIF 374 (512)
T ss_pred EEeccCChhhCCHh-------hcCccc----------------------------------cceEEEeCCCCHHHHHHHH
Confidence 99999999988888 788888 8899999999999999999
Q ss_pred HHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcc
Q 000978 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 812 (1203)
Q Consensus 773 k~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~ 812 (1203)
+.++... +... ..+....|+.++++..+|..
T Consensus 375 ~~~l~~~---l~l~------~~l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 375 SKYLTDS---LPLD------ADLAEFDGDREATAAALIQR 405 (512)
T ss_pred HHHhhcc---CCch------HHHHHhcCCCHHHHHHHHHH
Confidence 9887542 1111 11233457777777766654
No 73
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.3e-16 Score=170.87 Aligned_cols=215 Identities=16% Similarity=0.265 Sum_probs=165.0
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 000978 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1203)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1203)
-+.-+||+.+.... +-.|+...+|+-.+|.|.++.+... -..++++||+|||| ++++|||||.||+--|.|+-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg--~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCC--CcHHHHHHHHhhccchheeee
Confidence 45567889888887 9999999999999999999976442 45678999999999 999999999999999998866
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000978 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1203)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1203)
-.|.|.-
T Consensus 221 vgsefvq------------------------------------------------------------------------- 227 (408)
T KOG0727|consen 221 VGSEFVQ------------------------------------------------------------------------- 227 (408)
T ss_pred ccHHHHH-------------------------------------------------------------------------
Confidence 5422210
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 000978 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1203)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1203)
||.| .+
T Consensus 228 ------------kylg----------eg---------------------------------------------------- 233 (408)
T KOG0727|consen 228 ------------KYLG----------EG---------------------------------------------------- 233 (408)
T ss_pred ------------HHhc----------cC----------------------------------------------------
Confidence 3444 01
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC----Ccchhh----hHHHHHhcCCC-----cEE
Q 000978 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYS----TFKSRLEKLPD-----KVI 692 (1203)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~----~~~~~~----~lk~~L~~l~g-----~V~ 692 (1203)
-+.++-+|.++.+ +.|.||||||||.+... +..+.. +|-..|....| ||-
T Consensus 234 --------------prmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 234 --------------PRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred --------------cHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceE
Confidence 1368889999999 99999999999998762 223333 34444455554 999
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000978 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1203)
Q Consensus 693 vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Il 772 (1203)
||-+||+.|..||+ |-|||| ++++|++++|+..++.-++
T Consensus 297 vimatnradtldpa-------llrpgr----------------------------------ldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 297 VIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred EEEecCcccccCHh-------hcCCcc----------------------------------ccccccCCCCchhhhhhhH
Confidence 99999999999999 899999 5569999999999998898
Q ss_pred HHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 773 k~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
.....+ ..+..+++....+.+-.-++|+|+.++|-++-+
T Consensus 336 ~titsk----m~ls~~vdle~~v~rpdkis~adi~aicqeagm 374 (408)
T KOG0727|consen 336 STITSK----MNLSDEVDLEDLVARPDKISGADINAICQEAGM 374 (408)
T ss_pred Hhhhhc----ccCCcccCHHHHhcCccccchhhHHHHHHHHhH
Confidence 877655 334455555555666667788888777776543
No 74
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.67 E-value=1.4e-16 Score=193.00 Aligned_cols=214 Identities=20% Similarity=0.291 Sum_probs=157.2
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 000978 383 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1203)
Q Consensus 383 v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1203)
+...+..+++|++++-+ ++.|..|.+.+.. |++++.. +++ ...++.|||+|||| +++++||||||++.+++
T Consensus 44 ~~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppG--tGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAGVP 115 (495)
T ss_pred cccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCCC
Confidence 34456789999999988 9999999987765 7877643 333 34567899999999 99999999999999998
Q ss_pred EEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 000978 462 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 541 (1203)
Q Consensus 462 ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1203)
++.++.+.|..
T Consensus 116 ~~~i~~~~~~~--------------------------------------------------------------------- 126 (495)
T TIGR01241 116 FFSISGSDFVE--------------------------------------------------------------------- 126 (495)
T ss_pred eeeccHHHHHH---------------------------------------------------------------------
Confidence 87766533221
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 000978 542 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1203)
Q Consensus 542 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1203)
.|+
T Consensus 127 ----------------~~~------------------------------------------------------------- 129 (495)
T TIGR01241 127 ----------------MFV------------------------------------------------------------- 129 (495)
T ss_pred ----------------HHh-------------------------------------------------------------
Confidence 000
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------chhhhHHHHHhcC-----C
Q 000978 622 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL-----P 688 (1203)
Q Consensus 622 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~--------~~~~~lk~~L~~l-----~ 688 (1203)
++ ....++.+|+.+.. ..|+||||||||.+...+. +....+...|..+ .
T Consensus 130 -------------g~--~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 130 -------------GV--GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -------------cc--cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 00 12246778888877 8999999999999875221 1122233333222 3
Q ss_pred CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 000978 689 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 768 (1203)
Q Consensus 689 g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~R 768 (1203)
++|+|||+||+++..|++ |+|||| |+..|+|++|+.++|
T Consensus 192 ~~v~vI~aTn~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPA-------LLRPGR----------------------------------FDRQVVVDLPDIKGR 230 (495)
T ss_pred CCeEEEEecCChhhcCHH-------HhcCCc----------------------------------ceEEEEcCCCCHHHH
Confidence 479999999999988888 778888 888999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccc
Q 000978 769 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1203)
Q Consensus 769 l~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d 813 (1203)
.+||+.++.. .....+++....+..+.||+|+||..+|.++
T Consensus 231 ~~il~~~l~~----~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 231 EEILKVHAKN----KKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHHHHHHHhc----CCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999988754 2223445555667778899999998887754
No 75
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-15 Score=176.73 Aligned_cols=222 Identities=17% Similarity=0.302 Sum_probs=168.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|+.++...++|+.|.+-+.......+.|.+.|.... +|.|||||||||||+++.|+|+.|++.++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999999888888888887664333 799999999999999999999999999999998775332
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch-----h-HHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-----H-EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-----~-~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
.. ++.++..+ ...+||+|.|||.-+.-+..... + ....-.+..||..+||+-...+.--|||+|||.+
T Consensus 275 ---~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 66665543 33589999999987643322111 1 1123457789999999988777778999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCC--CcHHHHHHHHH-H--HHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDG--YSGSDLKNLCV-T--AAHRPIKE 1124 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G--~Sg~DL~~L~~-~--Aa~~aire 1124 (1203)
+.|||||+| |+|..|++..-+.++-..++..++.... +..-+.+|.+..++ .+++|+....- . .+-.+++.
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999986532 22334555554443 48999875432 1 35556666
Q ss_pred HHHHHH
Q 000978 1125 ILEKEK 1130 (1203)
Q Consensus 1125 l~~~~~ 1130 (1203)
+.+..+
T Consensus 427 Lv~~l~ 432 (457)
T KOG0743|consen 427 LVEALE 432 (457)
T ss_pred HHHHHH
Confidence 655433
No 76
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.2e-16 Score=167.73 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHH----HHhcCCC-----cEEEEeeeccCCCcccc
Q 000978 640 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKS----RLEKLPD-----KVIVIGSHTHTDNRKEK 706 (1203)
Q Consensus 640 k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~----~~~~~~~~lk~----~L~~l~g-----~V~vIGst~~~d~~~~~ 706 (1203)
-+.++.||=.+.+ +.|.|||+||||.+=. ++..-.+.++. .|.+|+| ||-||-+||+.|--|++
T Consensus 226 srmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 226 SRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred HHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 3479999999999 9999999999998543 22223334443 3355554 99999999999988888
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhcc
Q 000978 707 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 786 (1203)
Q Consensus 707 ~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~ 786 (1203)
|-|||| .+++|++++|++++|++||++|-.+|. +.-.
T Consensus 303 -------llrpgr----------------------------------idrkiefp~p~e~ar~~ilkihsrkmn--l~rg 339 (404)
T KOG0728|consen 303 -------LLRPGR----------------------------------IDRKIEFPPPNEEARLDILKIHSRKMN--LTRG 339 (404)
T ss_pred -------hcCCCc----------------------------------ccccccCCCCCHHHHHHHHHHhhhhhc--hhcc
Confidence 889999 457999999999999999999876632 2223
Q ss_pred CCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhH
Q 000978 787 GNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGI 858 (1203)
Q Consensus 787 ~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~ 858 (1203)
.|+. ..+-.-+|-+|++++.+|+++-++. + .....-++.++|+.+...
T Consensus 340 i~l~--kiaekm~gasgaevk~vcteagm~a-----------l-----------rerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 340 INLR--KIAEKMPGASGAEVKGVCTEAGMYA-----------L-----------RERRVHVTQEDFEMAVAK 387 (404)
T ss_pred cCHH--HHHHhCCCCccchhhhhhhhhhHHH-----------H-----------HHhhccccHHHHHHHHHH
Confidence 3443 3444567999999999999876631 1 335667888888887763
No 77
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.63 E-value=1.2e-14 Score=165.91 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=78.1
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhc--cCCCeEEEEcchhhhhcCCc----chhh-hHHHHHh------------------
Q 000978 631 ENSGTEDLDKLLINTLFEVVFSES--RSCPFILFMKDAEKSIAGNS----DSYS-TFKSRLE------------------ 685 (1203)
Q Consensus 631 ~~~~~e~~~k~~i~~L~ev~~~~~--~~~p~Ilfiddi~~~l~~~~----~~~~-~lk~~L~------------------ 685 (1203)
++|+|| .+..|+.+|+.+...+ +.+|+||||||||.++++.. ..-+ .+...|.
T Consensus 186 sk~vGE--sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 186 SENAGE--PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCcCCc--HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 356677 8889999999998764 67899999999999887321 1111 2222332
Q ss_pred cCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 000978 686 KLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 765 (1203)
Q Consensus 686 ~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~ 765 (1203)
....+|+||++||+++..+++ |+|||| |+.. |.+|+.
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpA-------LlRpGR----------------------------------fDk~--i~lPd~ 300 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAP-------LIRDGR----------------------------------MEKF--YWAPTR 300 (413)
T ss_pred ccCCCceEEEeCCCcccCCHh-------HcCCCC----------------------------------CCce--eCCCCH
Confidence 124579999999999989999 999999 5554 458999
Q ss_pred HHHHHHHHHhhhh
Q 000978 766 EALLASWKHQLDR 778 (1203)
Q Consensus 766 E~Rl~Ilk~~Le~ 778 (1203)
++|..||+.++.+
T Consensus 301 e~R~eIL~~~~r~ 313 (413)
T PLN00020 301 EDRIGVVHGIFRD 313 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988865
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=6.1e-15 Score=186.31 Aligned_cols=184 Identities=24% Similarity=0.396 Sum_probs=139.3
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.++++.|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 466888998888877665542 122579999999999999999999987 67899999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch-hHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
+..+. .++.|+.+..++.+|+.+.+..+.||||||||.|++.....+. .... .++.. .+ .++.+.+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~~---~l------~~g~i~~I 315 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLKP---AL------SSGKLRCI 315 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHHH---HH------hCCCeEEE
Confidence 88886 4788999999999999998888999999999999876432221 1221 22222 22 23678999
Q ss_pred EecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC----CC-CCchhHHHHHHHcCCCcH
Q 000978 1046 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DL-SPDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1046 aTTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~----~l-~~d~dl~~LA~~T~G~Sg 1107 (1203)
++|+.. ...|+++.|||. .|.|+.|+.+++.+||+.+.... ++ ..+..+..++..+..|.+
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 999863 467999999995 79999999999999999876542 22 245556777777766654
No 79
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.6e-14 Score=164.10 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=135.3
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 978 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G 978 (1203)
+|++++|.+++++.|..++..... . ..++.++||+||||+|||+||+++|++++..+..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------R-QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------c-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 688999999999999888753111 1 233468999999999999999999999998877665443211
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh--hcCCcc-----cCCccEEEEEecCCC
Q 000978 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-----KDTERILVLAATNRP 1051 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~--ldgl~~-----~~~~~VlVIaTTN~p 1051 (1203)
...+...+... ..+.|||||||+.+. ....+.+..+++..-.. ++.... ....++.+|++||.+
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11122222222 246899999999883 22223333333222111 011000 011347889999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1052 ~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
..+++++++||...+.+..|+.+++.++++..+....+. ++..++.|++.+.|+. +.+..++..++.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 999999999998889999999999999999988766554 4455788999999865 555677666543
No 80
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=3.8e-14 Score=163.38 Aligned_cols=199 Identities=21% Similarity=0.241 Sum_probs=138.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|++++|.+++++.+..++..... . ..++.++||+||||+|||++|+++|++++..+..++...+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 3799999999999999887753111 1 24457899999999999999999999999988777654331
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH--hhcCCccc-----CCccEEEEEecCC
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTK-----DTERILVLAATNR 1050 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~--~ldgl~~~-----~~~~VlVIaTTN~ 1050 (1203)
....+..++... ..++||||||||.+. ....+.+..+++.... .++..... .-.++.+|++|++
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 122334444332 246899999999883 1222232233222210 01110000 1134788999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
+..+++.+++||...+.++.|+.+++.+|++..+...++. ++..+..|+..+.|+. +.+..++..+..
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 9999999999999899999999999999999988876655 4455789999999854 566666665443
No 81
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=5.7e-15 Score=168.47 Aligned_cols=174 Identities=25% Similarity=0.460 Sum_probs=129.5
Q ss_pred cccccccccHHHH---HHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 898 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk---~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.++++++|++++. ..|++++.. ....+++||||||||||+||+.||...+.+|..++...
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 4688999999887 345555542 22368999999999999999999999999999998633
Q ss_pred ccccccHHHHHHHHHHHHhcC----CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec--
Q 000978 975 KWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1048 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT-- 1048 (1203)
..-+-++.+++.|++.. ..|||||||+++ +...+++ ||-.+ +++.+++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccCC
Confidence 34567889999986553 479999999988 3222222 32222 34677888766
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh--CCCC------CchhHHHHHHHcCCCcHHHHH
Q 000978 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--EDLS------PDVDFDAIANMTDGYSGSDLK 1111 (1203)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~--~~l~------~d~dl~~LA~~T~G~Sg~DL~ 1111 (1203)
|+.+.|.+++++|. +++.+.+.+.++..++++..+.. .++. ++..++.|+..++|...+.|.
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN 211 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHH
Confidence 55689999999999 78999999999999999984432 2333 344578889999886665553
No 82
>CHL00176 ftsH cell division protein; Validated
Probab=99.62 E-value=2e-15 Score=186.46 Aligned_cols=215 Identities=20% Similarity=0.297 Sum_probs=156.6
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeE
Q 000978 383 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 462 (1203)
Q Consensus 383 v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~l 462 (1203)
+....+..++|+++..+ +..|..|.+.+.. |++++.. ..-=...++.|||+|||| +++++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~~--~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPERF--TAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHHH--hhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 34556778999999988 9999999888764 8887653 222235578899999999 999999999999999998
Q ss_pred EEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000978 463 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 542 (1203)
Q Consensus 463 l~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1203)
+.++.+.|.. .
T Consensus 245 i~is~s~f~~--------~------------------------------------------------------------- 255 (638)
T CHL00176 245 FSISGSEFVE--------M------------------------------------------------------------- 255 (638)
T ss_pred eeccHHHHHH--------H-------------------------------------------------------------
Confidence 8776533321 0
Q ss_pred cccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccc
Q 000978 543 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 622 (1203)
Q Consensus 543 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff 622 (1203)
|+|
T Consensus 256 ----------------~~g------------------------------------------------------------- 258 (638)
T CHL00176 256 ----------------FVG------------------------------------------------------------- 258 (638)
T ss_pred ----------------hhh-------------------------------------------------------------
Confidence 000
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhhHHHHHhcC-----CC
Q 000978 623 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----PD 689 (1203)
Q Consensus 623 ~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~--------~~~~~~~~lk~~L~~l-----~g 689 (1203)
. ....++.+|+.+.. ..|+||||||||.+.. ++.+.-..|...|..+ ..
T Consensus 259 -------------~--~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 259 -------------V--GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -------------h--hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 0 11136777877776 8999999999999863 1222333344444332 34
Q ss_pred cEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHH
Q 000978 690 KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALL 769 (1203)
Q Consensus 690 ~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl 769 (1203)
+|+|||+||+++..|++ |+|||| |+..|.|.+|+.++|.
T Consensus 321 ~ViVIaaTN~~~~LD~A-------LlRpGR----------------------------------Fd~~I~v~lPd~~~R~ 359 (638)
T CHL00176 321 GVIVIAATNRVDILDAA-------LLRPGR----------------------------------FDRQITVSLPDREGRL 359 (638)
T ss_pred CeeEEEecCchHhhhhh-------hhcccc----------------------------------CceEEEECCCCHHHHH
Confidence 89999999999877777 778888 8889999999999999
Q ss_pred HHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccc
Q 000978 770 ASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1203)
Q Consensus 770 ~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d 813 (1203)
.||+.++.. .....+.+....+-.+.|++|+||..+|.++
T Consensus 360 ~IL~~~l~~----~~~~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 360 DILKVHARN----KKLSPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred HHHHHHHhh----cccchhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999988865 2233345555566677899999998876643
No 83
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.60 E-value=3.2e-15 Score=174.61 Aligned_cols=213 Identities=21% Similarity=0.286 Sum_probs=153.6
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+.-+++|++++.. +..+..|.+++..+++++++.+... ...+++|||+|||| +++++||||+|++.++.++.+.
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g--~~~p~gvLL~GppG--tGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG--IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCC--CCHHHHHHHHHHhCCCCEEecc
Confidence 3457789998777 9999999999999999998753221 23467899999999 9999999999999998876554
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
.+.+..
T Consensus 189 ~~~l~~-------------------------------------------------------------------------- 194 (364)
T TIGR01242 189 GSELVR-------------------------------------------------------------------------- 194 (364)
T ss_pred hHHHHH--------------------------------------------------------------------------
Confidence 211110
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
T Consensus 195 -------------------------------------------------------------------------------- 194 (364)
T TIGR01242 195 -------------------------------------------------------------------------------- 194 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------chhhhHHHHHhcC-----CCcEEE
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL-----PDKVIV 693 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~--------~~~~~lk~~L~~l-----~g~V~v 693 (1203)
+|.++ ....+..+|+.+.. ..|.||||||+|.+...+. +.-..+-..|..+ .++|+|
T Consensus 195 -----~~~g~--~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 195 -----KYIGE--GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred -----HhhhH--HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 01111 22356778887776 8999999999999875221 1112222222222 368999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000978 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1203)
Q Consensus 694 IGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk 773 (1203)
|+++|+++..+++ |+|||| |+..|+|++|+.++|.+||+
T Consensus 265 I~ttn~~~~ld~a-------l~r~gr----------------------------------fd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 265 IAATNRPDILDPA-------LLRPGR----------------------------------FDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred EEecCChhhCChh-------hcCccc----------------------------------CceEEEeCCcCHHHHHHHHH
Confidence 9999999877776 666777 77899999999999999999
Q ss_pred HhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcccc
Q 000978 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQ 814 (1203)
Q Consensus 774 ~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~ 814 (1203)
.++.. .....+++....+..+.|++|+||..+|.++.
T Consensus 304 ~~~~~----~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 304 IHTRK----MKLAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred HHHhc----CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 87644 33334455556666778999999988877543
No 84
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=1.6e-14 Score=183.42 Aligned_cols=206 Identities=18% Similarity=0.281 Sum_probs=140.8
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 973 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~-------- 973 (1203)
++.|++++++.+.+++...... ... ....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~--~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKM--KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5789999999999987643211 111 123799999999999999999999999999999876532
Q ss_pred -cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcC---------C--cccCCcc
Q 000978 974 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG---------L--RTKDTER 1041 (1203)
Q Consensus 974 -s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldg---------l--~~~~~~~ 1041 (1203)
..|.|.....+.+.|..+....| ||||||||.+...... ... +.|+..++. . ...+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~-------~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPA-------SALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHH-------HHHHHhcCHHhcCccccccCCceeccCC
Confidence 24667777778888888766555 8999999999643211 111 223333321 0 0112357
Q ss_pred EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh-----hCCCC------CchhHHHHHH-HcCCCcHHH
Q 000978 1042 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-----KEDLS------PDVDFDAIAN-MTDGYSGSD 1109 (1203)
Q Consensus 1042 VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~-----~~~l~------~d~dl~~LA~-~T~G~Sg~D 1109 (1203)
+++|+|||..+.+++++++|| .+|.|+.|+.+++.+|++.++. ..++. .+..+..|++ .+..+..++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 999999999999999999999 5889999999999999988762 22221 2233444544 333444566
Q ss_pred HHHHHHHHHHHHHHHH
Q 000978 1110 LKNLCVTAAHRPIKEI 1125 (1203)
Q Consensus 1110 L~~L~~~Aa~~airel 1125 (1203)
|+.++......+.+++
T Consensus 543 l~r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 543 LERQIEKICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555554444443
No 85
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.1e-15 Score=159.70 Aligned_cols=215 Identities=15% Similarity=0.229 Sum_probs=164.9
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
.-+||+.+...- .....-|.+.+-.+|-|||-+ +.+ -..+++|||+|||| .+++.+|+|.|+.-+|.|+-+=
T Consensus 171 kpdvty~dvggc--keqieklrevve~pll~perfv~lg---idppkgvllygppg--tgktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 171 KPDVTYSDVGGC--KEQIEKLREVVELPLLHPERFVNLG---IDPPKGVLLYGPPG--TGKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred CCCcccccccch--HHHHHHHHHHHhccccCHHHHhhcC---CCCCCceEEeCCCC--CchhHHHHHHhcccCceEEeeh
Confidence 345677775555 667788999999999999853 332 34678999999999 8999999999999999987542
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
.| | |-+
T Consensus 244 gs-----------e-----------------------lvq---------------------------------------- 249 (435)
T KOG0729|consen 244 GS-----------E-----------------------LVQ---------------------------------------- 249 (435)
T ss_pred hH-----------H-----------------------HHH----------------------------------------
Confidence 21 1 111
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
||||
T Consensus 250 -----------kyvg----------------------------------------------------------------- 253 (435)
T KOG0729|consen 250 -----------KYVG----------------------------------------------------------------- 253 (435)
T ss_pred -----------HHhh-----------------------------------------------------------------
Confidence 4555
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHH----hcC-----CCcEEE
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVIV 693 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~----~~~~~~~~lk~~L----~~l-----~g~V~v 693 (1203)
| .-+.++.||+.+.. ...+||||||||.+=+ ....-.|.++.++ .+| +|||-|
T Consensus 254 ---------e--garmvrelf~mart---kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 254 ---------E--GARMVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred ---------h--hHHHHHHHHHHhcc---cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 2 44579999999999 9999999999998544 1123345555444 222 689999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000978 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1203)
Q Consensus 694 IGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk 773 (1203)
+-+||++|.-||+ |-|||| +++++++.||+-|+|..|++
T Consensus 320 lmatnrpdtldpa-------llrpgr----------------------------------ldrkvef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 320 LMATNRPDTLDPA-------LLRPGR----------------------------------LDRKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred EeecCCCCCcCHh-------hcCCcc----------------------------------cccceeccCCcccccceeEE
Confidence 9999999999999 899999 55799999999999999999
Q ss_pred HhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccch
Q 000978 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTN 818 (1203)
Q Consensus 774 ~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~ 818 (1203)
+|... .....++...-.+--+.+-.|++|+++|+++-++..
T Consensus 359 ihaks----msverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 359 IHAKS----MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred Eeccc----cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 98744 444556666556667889999999999999877643
No 86
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.56 E-value=8.8e-14 Score=152.63 Aligned_cols=187 Identities=23% Similarity=0.312 Sum_probs=138.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|++++|++++|+.|.-++.....+ ....-++|||||||.|||+||..||+++|.++...+.+.+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 47899999999999998887642222 334579999999999999999999999999988877765521
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh-cCC-ccc-----CCccEEEEEecCC
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGL-RTK-----DTERILVLAATNR 1050 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l-dgl-~~~-----~~~~VlVIaTTN~ 1050 (1203)
..-+..++... ...+|||||||++| ++...+.+.-+++.|...+ -|- +.. +-.++.+|++|.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 22233333322 24589999999988 3344444444444443221 010 000 1257889999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCc
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~S 1106 (1203)
...|...++.||+...++..++.++..+|+.......++. .+....+||+++.|-.
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999988777665 4455788999999844
No 87
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.9e-14 Score=155.04 Aligned_cols=234 Identities=20% Similarity=0.317 Sum_probs=173.0
Q ss_pred ccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccc
Q 000978 391 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 470 (1203)
Q Consensus 391 vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~ 470 (1203)
.++.+.... |.....|++|...+++|++-++.. =-..++++|++|||| .++++||+|-|-+-.|.||-|
T Consensus 168 E~YsDiGGl--dkQIqELvEAiVLpmth~ekF~~l--gi~pPKGvLmYGPPG--TGKTlmARAcAaqT~aTFLKL----- 236 (424)
T KOG0652|consen 168 EQYSDIGGL--DKQIQELVEAIVLPMTHKEKFENL--GIRPPKGVLMYGPPG--TGKTLMARACAAQTNATFLKL----- 236 (424)
T ss_pred ccccccccH--HHHHHHHHHHhccccccHHHHHhc--CCCCCCceEeeCCCC--CcHHHHHHHHHHhccchHHHh-----
Confidence 456776666 899999999999999999865321 134678999999999 899999999999988877643
Q ss_pred cCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 000978 471 LGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNHM 550 (1203)
Q Consensus 471 ~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 550 (1203)
+| ..|-+
T Consensus 237 Ag-----------------------------PQLVQ-------------------------------------------- 243 (424)
T KOG0652|consen 237 AG-----------------------------PQLVQ-------------------------------------------- 243 (424)
T ss_pred cc-----------------------------hHHHh--------------------------------------------
Confidence 33 00110
Q ss_pred cccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccccc
Q 000978 551 LRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLRL 630 (1203)
Q Consensus 551 ~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~l 630 (1203)
-|+|
T Consensus 244 -------MfIG--------------------------------------------------------------------- 247 (424)
T KOG0652|consen 244 -------MFIG--------------------------------------------------------------------- 247 (424)
T ss_pred -------hhhc---------------------------------------------------------------------
Confidence 1222
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhhHHHHHhcCC-----CcEEEEeee
Q 000978 631 ENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLP-----DKVIVIGSH 697 (1203)
Q Consensus 631 ~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~--------~~~~~~~~lk~~L~~l~-----g~V~vIGst 697 (1203)
+ .-.+++--|.++++ ..|.||||||+|.+=. |..+.-...-..|.+|. ..|-||.+|
T Consensus 248 -----d--GAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAAT 317 (424)
T KOG0652|consen 248 -----D--GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAAT 317 (424)
T ss_pred -----c--hHHHHHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeec
Confidence 1 23468888999998 9999999999998543 22333333333344444 499999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 698 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 698 ~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
|+.|--||+ |-|-|| ++++|++++|++++|..|+++|..
T Consensus 318 NRvDiLDPA-------LlRSGR----------------------------------LDRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652|consen 318 NRVDILDPA-------LLRSGR----------------------------------LDRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred ccccccCHH-------Hhhccc----------------------------------ccccccCCCCChHHHHHHHHHhhh
Confidence 999977777 666777 567999999999999999999986
Q ss_pred hhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhh
Q 000978 778 RDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 857 (1203)
Q Consensus 778 ~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~ 857 (1203)
+ .....+++..+.+-.+-++.|+.++.+|.++-++ |+ ....--++.++|..++.
T Consensus 357 K----Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi-----------AL-----------Rr~atev~heDfmegI~ 410 (424)
T KOG0652|consen 357 K----MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI-----------AL-----------RRGATEVTHEDFMEGIL 410 (424)
T ss_pred h----cCCCCCCCHHHHhhcccccCchhheeeehhhhHH-----------HH-----------hcccccccHHHHHHHHH
Confidence 5 4556778888888889999999999999987552 12 12344567788888777
Q ss_pred HHHH
Q 000978 858 IFQA 861 (1203)
Q Consensus 858 ~lq~ 861 (1203)
.+|.
T Consensus 411 eVqa 414 (424)
T KOG0652|consen 411 EVQA 414 (424)
T ss_pred HHHH
Confidence 6554
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.5e-13 Score=163.49 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=133.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+...|+..+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 4799999999999999888763 2223469999999999999999999998652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
|+.++.+.- ..-..++.+.+.+. .....|+||||+|.|- ...++.|+.
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHH
Confidence 333332110 11223444443332 3345799999999882 234566666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++. ...++++|.+|+.++.|.+.+++|+ .++.|..++.++..++++.++..+++. .+..+..|++.++|.. +
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~-R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV-R 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH-H
Confidence 6654 2467888888888999999999999 678999999999999999999887765 4566888999999854 4
Q ss_pred HHHHHHHH
Q 000978 1109 DLKNLCVT 1116 (1203)
Q Consensus 1109 DL~~L~~~ 1116 (1203)
+..++++.
T Consensus 218 dAL~lLeq 225 (484)
T PRK14956 218 DMLSFMEQ 225 (484)
T ss_pred HHHHHHHH
Confidence 54455544
No 89
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.2e-13 Score=167.79 Aligned_cols=183 Identities=20% Similarity=0.272 Sum_probs=134.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+.+|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 4799999999999999988863 223356899999999999999999999965
Q ss_pred --------------cEEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHH
Q 000978 963 --------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024 (1203)
Q Consensus 963 --------------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il 1024 (1203)
.++.++... ...-..++.+.+.+. .....|+||||+|.|- ....
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~Aa 141 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAF 141 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHH
Confidence 223333221 011233444444432 3345799999999882 2345
Q ss_pred HHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-hhHHHHHHHcC
Q 000978 1025 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTD 1103 (1203)
Q Consensus 1025 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d-~dl~~LA~~T~ 1103 (1203)
|.||..|+.- ..++++|.+|+.+..|.+.|++|+ ..+.|..++.++..+.++.++..+++..+ ..+..|++.++
T Consensus 142 NALLKTLEEP----P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhccC----CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6677666652 467888888999999999999999 78999999999999999999887776543 44678899988
Q ss_pred CCcHHHHHHHHHHH
Q 000978 1104 GYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1104 G~Sg~DL~~L~~~A 1117 (1203)
| +.++..+++..+
T Consensus 217 G-s~RdALsLLdQa 229 (700)
T PRK12323 217 G-SMRDALSLTDQA 229 (700)
T ss_pred C-CHHHHHHHHHHH
Confidence 8 455555665543
No 90
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.5e-13 Score=168.48 Aligned_cols=184 Identities=20% Similarity=0.245 Sum_probs=134.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+++.|+..+.. .+..+.+||+||+|+|||++|+++|+.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 4799999999999999988763 2333568999999999999999999998642
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++... ...-..++.+++.+.. ....||||||+|.|. ....+.|+.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHH
Confidence 33333221 1112234555554432 245799999999882 123455555
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.|+.. ..++.||.+||.+..|.+.|++|| ..|.|..++.++..++|+.++..+++. ++..+..|++.++|...
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR- 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR- 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-
Confidence 55542 457888899999999999999999 789999999999999999999888765 45567889999998554
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
+..+++..+.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 4445544433
No 91
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.52 E-value=3.4e-14 Score=176.97 Aligned_cols=125 Identities=17% Similarity=0.305 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHH---hcC--CCcEEEEeeeccCCCccccCC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRL---EKL--PDKVIVIGSHTHTDNRKEKSH 708 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~~~~~lk~~L---~~l--~g~V~vIGst~~~d~~~~~~~ 708 (1203)
.++.+|+.+.. ..|+||||||||.+...+ .+.-..+...| +.. ...|+|||+||+++..|++
T Consensus 232 ~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A-- 306 (644)
T PRK10733 232 RVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA-- 306 (644)
T ss_pred HHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH--
Confidence 36667777766 799999999999976421 12222333333 222 2379999999999988888
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCC
Q 000978 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1203)
Q Consensus 709 ~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N 788 (1203)
|+|||| |+++|.|++|+.++|.+||+.++.+ .....+
T Consensus 307 -----l~RpgR----------------------------------fdr~i~v~~Pd~~~R~~Il~~~~~~----~~l~~~ 343 (644)
T PRK10733 307 -----LLRPGR----------------------------------FDRQVVVGLPDVRGREQILKVHMRR----VPLAPD 343 (644)
T ss_pred -----HhCCcc----------------------------------cceEEEcCCCCHHHHHHHHHHHhhc----CCCCCc
Confidence 788888 8889999999999999999988755 333445
Q ss_pred chhHHHHhhccCCCcccccchhcccc
Q 000978 789 LNHLRTVLGRSGLECEGLETLCIRDQ 814 (1203)
Q Consensus 789 ~~~l~~vL~t~glsc~DL~~Lci~d~ 814 (1203)
++....+-.+.||+|+||..+|.++.
T Consensus 344 ~d~~~la~~t~G~sgadl~~l~~eAa 369 (644)
T PRK10733 344 IDAAIIARGTPGFSGADLANLVNEAA 369 (644)
T ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 55555566778999999988877543
No 92
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.5e-14 Score=169.22 Aligned_cols=238 Identities=19% Similarity=0.291 Sum_probs=174.8
Q ss_pred ccCCccccccccccccccchhHHHHHHHHHhhccCCcc-cccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 000978 383 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKD-HAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1203)
Q Consensus 383 v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~-~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1203)
......+.|+|.+.=.- |..|..|.+.+- .||.|. |.+.+. -.++++||.|||| ..+++||||.|-+-+++
T Consensus 139 ~~~~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~ky~~lGa---kiPkGvlLvGpPG--TGKTLLAkAvAgEA~VP 210 (596)
T COG0465 139 LYLEDQVKVTFADVAGV--DEAKEELSELVD-FLKNPKKYQALGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVP 210 (596)
T ss_pred HhcccccCcChhhhcCc--HHHHHHHHHHHH-HHhCchhhHhccc---ccccceeEecCCC--CCcHHHHHHHhcccCCC
Confidence 34444789999993333 899999999876 677654 445554 5678999999999 89999999999999998
Q ss_pred EEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 000978 462 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 541 (1203)
Q Consensus 462 ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1203)
+.-+-.|+|--
T Consensus 211 Ff~iSGS~FVe--------------------------------------------------------------------- 221 (596)
T COG0465 211 FFSISGSDFVE--------------------------------------------------------------------- 221 (596)
T ss_pred ceeccchhhhh---------------------------------------------------------------------
Confidence 76554433311
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 000978 542 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1203)
Q Consensus 542 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1203)
-|||
T Consensus 222 ----------------mfVG------------------------------------------------------------ 225 (596)
T COG0465 222 ----------------MFVG------------------------------------------------------------ 225 (596)
T ss_pred ----------------hhcC------------------------------------------------------------
Confidence 1222
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhhHHHHHhcC---C--
Q 000978 622 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL---P-- 688 (1203)
Q Consensus 622 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~--------~~~~~~~~lk~~L~~l---~-- 688 (1203)
+|+- -++-||+.+.+ +.|+||||||||..=. |+.+....+--.|-.. .
T Consensus 226 ---vGAs-------------RVRdLF~qAkk---~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 226 ---VGAS-------------RVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ---CCcH-------------HHHHHHHHhhc---cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 1111 38889999999 9999999999997432 2333333333333222 2
Q ss_pred CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 000978 689 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 768 (1203)
Q Consensus 689 g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~R 768 (1203)
..|+||++||++|--|++ |.|||| |+++|.|.+||..+|
T Consensus 287 ~gviviaaTNRpdVlD~A-------LlRpgR----------------------------------FDRqI~V~~PDi~gR 325 (596)
T COG0465 287 EGVIVIAATNRPDVLDPA-------LLRPGR----------------------------------FDRQILVELPDIKGR 325 (596)
T ss_pred CceEEEecCCCcccchHh-------hcCCCC----------------------------------cceeeecCCcchhhH
Confidence 379999999999988888 899999 888999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCcccccccc
Q 000978 769 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLS 848 (1203)
Q Consensus 769 l~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls 848 (1203)
.+|++.|++. ..+..+++....+-.+.|++|+||..++.+++++. . +..+..++
T Consensus 326 e~IlkvH~~~----~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~a---------------a-------r~n~~~i~ 379 (596)
T COG0465 326 EQILKVHAKN----KPLAEDVDLKKIARGTPGFSGADLANLLNEAALLA---------------A-------RRNKKEIT 379 (596)
T ss_pred HHHHHHHhhc----CCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHH---------------H-------HhcCeeEe
Confidence 9999988844 55556677777778889999999988877654421 1 22456678
Q ss_pred chhhhhhhhHH
Q 000978 849 CESIQYGIGIF 859 (1203)
Q Consensus 849 ~~~l~~al~~l 859 (1203)
..++..+...+
T Consensus 380 ~~~i~ea~drv 390 (596)
T COG0465 380 MRDIEEAIDRV 390 (596)
T ss_pred ccchHHHHHHH
Confidence 88888877744
No 93
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.50 E-value=2.1e-13 Score=171.41 Aligned_cols=196 Identities=18% Similarity=0.287 Sum_probs=139.2
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 969 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~~ 969 (1203)
++.+.|-+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 44567777777777665542 112578999999999999999999875 455666666
Q ss_pred cccc--cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEe
Q 000978 970 SSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1047 (1203)
Q Consensus 970 seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaT 1047 (1203)
..++ ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .++.+.+|++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEec
Confidence 5554 3577888999999999998888999999999999877643222222223333332 2467899999
Q ss_pred cCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-----CchhHHHHHHHcC-----CCcHHHHHH
Q 000978 1048 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTD-----GYSGSDLKN 1112 (1203)
Q Consensus 1048 TN~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-----~d~dl~~LA~~T~-----G~Sg~DL~~ 1112 (1203)
|+.++ ..|+++.|||. .|.|+.|+.+++.+||+.+....... .+..+..++..+. -+.+.....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred CChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 98753 67999999994 79999999999999999876543322 2333444444443 344556677
Q ss_pred HHHHHHH
Q 000978 1113 LCVTAAH 1119 (1203)
Q Consensus 1113 L~~~Aa~ 1119 (1203)
|+.+|+.
T Consensus 401 lldea~a 407 (758)
T PRK11034 401 VIDEAGA 407 (758)
T ss_pred HHHHHHH
Confidence 7777764
No 94
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.50 E-value=3.1e-13 Score=165.05 Aligned_cols=220 Identities=21% Similarity=0.317 Sum_probs=142.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I 967 (1203)
.+|+++.|.+...+.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5789999999999888765431 122579999999999999999998753 4689999
Q ss_pred ecccc-------ccccccccHH--HH-HHHHH----------HHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHH
Q 000978 968 SMSSI-------TSKWFGEGEK--YV-KAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1203)
Q Consensus 968 ~~seL-------~s~~~G~~e~--~I-~~lF~----------~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eL 1027 (1203)
+|... ....++.... +. ...|. ...+...++||||||+.| +...+..+.+++++-
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLEDR 202 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHhC
Confidence 98642 1111221100 00 00000 111223489999999988 333333333333332
Q ss_pred HHhhcC-----C------------cccCCcc-EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000978 1028 MVNWDG-----L------------RTKDTER-ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1203)
Q Consensus 1028 L~~ldg-----l------------~~~~~~~-VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l 1089 (1203)
...+.. . ....+.. .+|++||+.++.+++++++|+ ..+.|+.++.+++.+|++..+++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i 281 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGI 281 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 111110 0 0000122 455667788999999999999 57889999999999999999988765
Q ss_pred C-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 000978 1090 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 1165 (1203)
Q Consensus 1090 ~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~ 1165 (1203)
. ++..++.|++.+. +++++.++++.|+..+..+ ....|+.+|+++++.
T Consensus 282 ~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 282 NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVAE 330 (531)
T ss_pred CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHhC
Confidence 4 3444666766553 7899999998887654321 113599999999986
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.2e-13 Score=162.94 Aligned_cols=173 Identities=20% Similarity=0.324 Sum_probs=124.8
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc--------
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 972 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL-------- 972 (1203)
+|-.|++++|+++.+++.-- +.......+-+.|+||||+|||++|++||..||..|++++...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 46789999999999998631 11112222458999999999999999999999999999987544
Q ss_pred -ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHH-----HHHHhhcCCcccCCccEEEEE
Q 000978 973 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 973 -~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~-----eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
...|+|.....+-+.+....-.. -+++|||||.+. +........++..++. .|+...-.++. +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~N-PliLiDEvDKlG-~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTEN-PLILIDEVDKLG-SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCC-ceEEeehhhhhC-CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 23477777777777666665544 488999999996 2222222233333221 12211112211 347899999
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~ 1085 (1203)
|+|..+.+++.++.|+ .+|.+.-+..++..+|.+.+|-
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 9999999999999999 7899999999999999998874
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=8.1e-13 Score=160.93 Aligned_cols=184 Identities=22% Similarity=0.241 Sum_probs=134.3
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|++++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 4799999999999999988863 233467999999999999999999999865
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.++.++.++- ..-..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 3444443321 112334555544322 245799999999882 123455555
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. ...+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.++++. .+..+..|++.+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55543 355677777788888889999999 789999999999999999999888765 45567889999887 555
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7.3e-13 Score=159.22 Aligned_cols=175 Identities=18% Similarity=0.234 Sum_probs=126.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|++++|++.+.+.|+..+.. .+.+.++||+||||||||++|+++|+.++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 4799999999999988887753 223457999999999999999999999864
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.++.++.+.- ..-..++.+...+... ...||||||+|.|. ...++.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHH
Confidence 3455544321 1123345555444322 34699999999882 123345555
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+++|++|+.+..+.+++++|+ ..+.|..++.++...+++..+...++. ++..+..|+..+.|-.+.
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~ 214 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRD 214 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 55542 345777777777788999999999 589999999999999999998876654 455678899888774443
No 98
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=6.4e-13 Score=169.73 Aligned_cols=184 Identities=19% Similarity=0.329 Sum_probs=135.7
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
+++++.|.++....+.+.+.. +...++||+||||+|||++|+.+|+.+ +..++.++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 567888988876666554432 122579999999999999999999987 35578888
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
+..+. ..+.|+.+..++.++..+.+. .+.|||||||+.|.+.+...+...+. .++... + .++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~-n~Lkp~---l------~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA-NLLKPA---L------ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH-HHhhHH---h------hCCCeEEE
Confidence 87765 367788899999999998753 57899999999998765433322222 122211 1 24678899
Q ss_pred EecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC----CCC-CchhHHHHHHHcCCCcH
Q 000978 1046 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1046 aTTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~----~l~-~d~dl~~LA~~T~G~Sg 1107 (1203)
+||+.. ..+|++|.||| ..|.|+.|+.+++.+||+.+.... ++. .+..+..++.++.+|..
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 998863 46899999999 589999999999999987765432 222 46667888888887754
No 99
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.9e-14 Score=162.23 Aligned_cols=109 Identities=23% Similarity=0.339 Sum_probs=99.0
Q ss_pred cCCCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEE-----------ecCCceEEEEEEecCC
Q 000978 122 ETSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHV-----------QSEGSAVAMVESIGSK 190 (1203)
Q Consensus 122 ~~~~pWgrL~s~~~~~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~-----------~~~~~~~~~led~s~n 190 (1203)
....||+||+......+++++.+++||+||+.+||+.+....+|.+|++|... +.+++.++||+|+|+|
T Consensus 41 ~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~n 120 (475)
T KOG0615|consen 41 ATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRN 120 (475)
T ss_pred ccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccC
Confidence 34567999999999999999999999999999999999999999999887653 2345669999999999
Q ss_pred ceEEcCeeecCCCeeEccCCCEEEEeecCCeEEEEEecch
Q 000978 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLN 230 (1203)
Q Consensus 191 Gt~VNg~~~~k~~~~~L~~gDeI~f~~~~~~~yif~~l~~ 230 (1203)
|||||.+.+|||.+.+|+|||||.++.+..++|+|.+++.
T Consensus 121 GT~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~ 160 (475)
T KOG0615|consen 121 GTFVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSR 160 (475)
T ss_pred cccccHhHhhccccccccCCCEEEeccchhheeeeecccc
Confidence 9999999999999999999999999999999999999743
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.2e-12 Score=161.31 Aligned_cols=184 Identities=22% Similarity=0.281 Sum_probs=134.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+.+.|+..+.. .+-+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5799999999999999988763 1223558999999999999999999999652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++... ...-..++.+...+. .....|+||||+|.|- ....+.||.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHH
Confidence 23333221 011233455444433 2345699999999882 234566666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.- ..++.+|.+|+.+..|.+.+++|+ ..+.|..++.++....|+.++..+++. .+..+..|+..++|. .+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-MR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 66552 456777777888899999999998 889999999999999999998877665 445578899999884 45
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 5556665544
No 101
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=5.7e-13 Score=157.55 Aligned_cols=222 Identities=22% Similarity=0.313 Sum_probs=141.3
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE 979 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k--~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G~ 979 (1203)
++|++.+++.|...+..+..+...... .....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999887766433222211000 012234468999999999999999999999999999999988753 57776
Q ss_pred c-HHHHHHHHHH----HHhcCCceEEEccchhhccCCCCCch-hH-HHHHHHHHHHHhhcCCc---------ccCCccEE
Q 000978 980 G-EKYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------TKDTERIL 1043 (1203)
Q Consensus 980 ~-e~~I~~lF~~----A~k~~PsILfIDEID~L~~~r~~~~~-~~-al~~il~eLL~~ldgl~---------~~~~~~Vl 1043 (1203)
. +..+..++.. ..+..++||||||||.+..+..++.. .. .-..+.+.||..|++.. ......++
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 3344554432 23457899999999999765332211 00 11235566666666431 11123456
Q ss_pred EEEecCCCC----------------------------------------------------CCcHHHHhcccccccCCCC
Q 000978 1044 VLAATNRPF----------------------------------------------------DLDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 1044 VIaTTN~p~----------------------------------------------------~Ld~aLlrRFd~~I~v~~P 1071 (1203)
+|+|+|..+ .+.|+|+.|++.++.|..+
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 666655400 1467888899999999999
Q ss_pred CHHHHHHHHHH----HHh-------hCCCC---CchhHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 000978 1072 DAPNRAKILQV----ILA-------KEDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1072 d~eeR~eIL~~----~l~-------~~~l~---~d~dl~~LA~~--T~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
+.++..+|+.. +++ ..++. .+..++.|++. ..++-.+.|+.+++......+.+
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999999973 322 22222 33445667765 34556677777776666555544
No 102
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.8e-13 Score=165.08 Aligned_cols=184 Identities=22% Similarity=0.259 Sum_probs=132.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 964 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~f------------- 964 (1203)
.+|++++|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+++.-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 5799999999999999988763 12335579999999999999999999996531
Q ss_pred -----------EEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 965 -----------INISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 965 -----------i~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
+.++... ...-..++.+...+. .....|+||||+|.|- ...++.|+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 1111110 011223455544433 2345799999999882 345566666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.|+.. ..++.+|.+|+.+..|.+.|++|+ .++.|..++.++..++|+.++..+++. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 456777777888888999999999 789999999999999999998876654 44567889999988 455
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.++|..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 6666665433
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=1.1e-12 Score=147.03 Aligned_cols=207 Identities=26% Similarity=0.422 Sum_probs=139.6
Q ss_pred cccccccccHHHHH---HHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccc
Q 000978 898 VTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 971 (1203)
Q Consensus 898 vt~~dI~Gle~vk~---~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~---fi~I~~se 971 (1203)
-+++|++|++++.. .|+.++.. . .+.+++|+||||||||+||+.|+.....+ ||.++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq----------~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ----------N----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc----------C----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 35777788777653 23444432 1 23589999999999999999999988665 77776532
Q ss_pred cccccccccHHHHHHHHHHHHhc-----CCceEEEccchhhccCCCCCchhHHHHHHHH-HHHHhhcCCcccCCccEEEE
Q 000978 972 ITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKN-EFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~al~~il~-eLL~~ldgl~~~~~~~VlVI 1045 (1203)
...+-++.+|+.+++. ...|||||||+++ + +..+ .|| +-.+++.|++|
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----N--------ksQQD~fL------P~VE~G~I~lI 254 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----N--------KSQQDTFL------PHVENGDITLI 254 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----h--------hhhhhccc------ceeccCceEEE
Confidence 3345688888888654 4579999999977 2 2222 232 22345678888
Q ss_pred Eec--CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC--------CCC------CchhHHHHHHHcCCCcHHH
Q 000978 1046 AAT--NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS------PDVDFDAIANMTDGYSGSD 1109 (1203)
Q Consensus 1046 aTT--N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~--------~l~------~d~dl~~LA~~T~G~Sg~D 1109 (1203)
++| |..+.|..++++|+ +++.+.....+....||...+.-. ++. .+..++.|+..++|.....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 776 55678999999999 788888899999999988755411 111 2334688899999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1110 LKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1110 L~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
|..|--.+.+...| ++. ....+|+.+|+++++..-.
T Consensus 334 LN~Lems~~m~~tr---------------~g~--------~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 334 LNALEMSLSMFCTR---------------SGQ--------SSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHHhh---------------cCC--------cccceecHHHHHHHHhhcc
Confidence 75553222221111 111 1335799999999987654
No 104
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.2e-12 Score=158.88 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=134.7
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 4799999999999999998863 2233568999999999999999999999642
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++.+.- ..-..++.+.+.+.. ....|+||||+|.|- ...++.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHH
Confidence 444543321 122334555544332 234699999999882 223455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..++|..++.++....++.++..+++. .+..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 345777777788888888999999 788999999999999999999888765 44557888888877 666
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.+++..+.
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 105
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.3e-13 Score=152.43 Aligned_cols=214 Identities=21% Similarity=0.285 Sum_probs=160.2
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
-++||++.... -...-.|.+..-+||++++++. +-=-..+...||+||+| .+++.||+|.|...||.+|.+-++
T Consensus 127 ~~~s~~~~ggl--~~qirelre~ielpl~np~lf~--rvgIk~Pkg~ll~GppG--tGKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 127 RNISFENVGGL--FYQIRELREVIELPLTNPELFL--RVGIKPPKGLLLYGPPG--TGKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred cccCHHHhCCh--HHHHHHHHhheEeeccCchhcc--ccCCCCCceeEEeCCCC--CchhHHHHHHHHhcCCceEEeeHh
Confidence 35678886543 3445578899999999999963 21235678899999999 899999999999999999988763
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000978 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1203)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1203)
-|-.
T Consensus 201 ~lv~---------------------------------------------------------------------------- 204 (388)
T KOG0651|consen 201 ALVD---------------------------------------------------------------------------- 204 (388)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 000978 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1203)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1203)
+|+|
T Consensus 205 ---------kyiG------------------------------------------------------------------- 208 (388)
T KOG0651|consen 205 ---------KYIG------------------------------------------------------------------- 208 (388)
T ss_pred ---------hhcc-------------------------------------------------------------------
Confidence 2333
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC----CcchhhhHHHHH----hcC-----CCcEEEEe
Q 000978 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRL----EKL-----PDKVIVIG 695 (1203)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~----~~~~~~~lk~~L----~~l-----~g~V~vIG 695 (1203)
| ..++|+..|.-+.. .+||||||||||-+.+. ..-....++.+| +.+ -++|-+|+
T Consensus 209 -------E--saRlIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 209 -------E--SARLIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred -------c--HHHHHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 2 45689999999998 99999999999987651 122223344444 433 35999999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 000978 696 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1203)
Q Consensus 696 st~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~ 775 (1203)
++|++|.-+|+ |-|||| ++++++|++|++..|+.|+|.|
T Consensus 277 atNrpdtLdpa-------LlRpGR----------------------------------ldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 277 ATNRPDTLDPA-------LLRPGR----------------------------------LDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred ecCCccccchh-------hcCCcc----------------------------------ccceeccCCcchhhceeeEeec
Confidence 99999988888 889999 6678999999999999999987
Q ss_pred hhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccc
Q 000978 776 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1203)
Q Consensus 776 Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls 817 (1203)
-...... -.++..+.+--.-++.|+||+..|+++-++.
T Consensus 316 ~~~i~~~----Geid~eaivK~~d~f~gad~rn~~tEag~Fa 353 (388)
T KOG0651|consen 316 VQPIDFH----GEIDDEAILKLVDGFNGADLRNVCTEAGMFA 353 (388)
T ss_pred ccccccc----ccccHHHHHHHHhccChHHHhhhcccccccc
Confidence 6543322 2333344444456999999999999987754
No 106
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.7e-12 Score=150.20 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=131.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+++.|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4799999999999999888753 2233568999999999999999999998642
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++.+. ...-..++.+.+.+... ...|+||||+|.+- ....+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHH
Confidence 22222111 01223455555554322 24699999999882 123345555
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+.+|.+|+.++.+.+.+++|+ ..+.|.+|+.++..++++..++..+.. ++..+..|+..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 345667777777888999999999 688999999999999999998887654 45567888988887 555
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.+++..+.
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=2.2e-12 Score=154.97 Aligned_cols=168 Identities=19% Similarity=0.320 Sum_probs=112.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1011 (1203)
+.++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999988 566888988877654433322111122332223 47899999999885432
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhh
Q 000978 1012 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1012 ~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
. .++.+..+++.+. . .+..+||++...|.. +++.+++||. .++.+..|+.++|..|++..+..
T Consensus 228 ~---~~~~l~~~~n~l~-------~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 R---TQEEFFHTFNALH-------E--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---HHHHHHHHHHHHH-------H--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 1222222233322 1 123456655555544 6789999995 47889999999999999999987
Q ss_pred CCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1087 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1087 ~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 6544 55668889988876 5556665555443
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.7e-12 Score=154.13 Aligned_cols=184 Identities=21% Similarity=0.256 Sum_probs=137.3
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|+|++|++.+.+.|+..+.. .+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5799999999999999887753 234468999999999999999999997632
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.++.++.++- ..-..++.+.+.+... ...|+||||+|.|- ...++.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHH
Confidence 3455555421 1234466666655433 34699999999882 234556666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.+++.. ++..+..|++.+.| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 345777777788888999999999 678999999999999999999888765 45567888999887 666
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.+++..+.
T Consensus 213 ~alslLdqli 222 (491)
T PRK14964 213 NALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 109
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.45 E-value=3.6e-12 Score=151.58 Aligned_cols=180 Identities=25% Similarity=0.420 Sum_probs=125.2
Q ss_pred cccccccccHHHHHH---HHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 898 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~---L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.++++++|.+++... |.+.+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 468899999998655 7776642 112489999999999999999999999999999987532
Q ss_pred ccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec--
Q 000978 975 KWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1048 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT-- 1048 (1203)
....++.++..+. .....||||||||.+. ....+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc------CcEEEEEeCCC
Confidence 1233455555543 2256899999999872 1112233333332 345666554
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC--CC--CCchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DL--SPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~--~l--~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
|....+++++++|| .++.|..++.++...+++..+... ++ ..+..++.|++.+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33468899999999 789999999999999999887652 22 234456778888866 4445556555554
No 110
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=3.5e-12 Score=156.68 Aligned_cols=185 Identities=22% Similarity=0.283 Sum_probs=135.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 4799999999999999998763 2344679999999999999999999998543
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++.+. ......++.++..+.. ....||||||+|.|- ...++.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLK 141 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLK 141 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHH
Confidence 12222211 1123345666655432 234799999999772 233455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++...+|+.++..+++. .+..+..|++.+.| +.+
T Consensus 142 tLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 66542 356777778888889999999999 778899999999999999999988765 44557889999887 566
Q ss_pred HHHHHHHHHHH
Q 000978 1109 DLKNLCVTAAH 1119 (1203)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1203)
++.+++..+..
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 111
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=3.5e-12 Score=154.07 Aligned_cols=184 Identities=21% Similarity=0.276 Sum_probs=135.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+|++|++.+.+.|+..+.. .+.+.++||+||+|+|||++|+++|+.+++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 4799999999999999887653 2334689999999999999999999999642
Q ss_pred --------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHH
Q 000978 964 --------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKN 1025 (1203)
Q Consensus 964 --------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~ 1025 (1203)
++.++... ......++.+++.+... ...|+||||+|.|. ...++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~n 146 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFN 146 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHH
Confidence 22222111 12234566677666433 34699999999872 23345
Q ss_pred HHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCC
Q 000978 1026 EFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 1104 (1203)
Q Consensus 1026 eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G 1104 (1203)
.|+..++.. +..+++|.+|+.++.+.+.+++|+ .++.|..++.++...+++..+.+++.. .+..+..|+..++|
T Consensus 147 aLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEEP----PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 555555542 456777777788888999999999 678999999999999999999988765 34557889999887
Q ss_pred CcHHHHHHHHHHHH
Q 000978 1105 YSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1105 ~Sg~DL~~L~~~Aa 1118 (1203)
+.+++.++++.+.
T Consensus 222 -slR~al~~Ldkai 234 (507)
T PRK06645 222 -SARDAVSILDQAA 234 (507)
T ss_pred -CHHHHHHHHHHHH
Confidence 5566666666554
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=9.3e-13 Score=168.62 Aligned_cols=163 Identities=22% Similarity=0.364 Sum_probs=124.5
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.++.+.|.++....+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 466788888876666655542 122579999999999999999999988 78899998
Q ss_pred ccccc--cccccccHHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
+..++ .++.|+.+..++.+|..+.+ ..+.|||||||+.|.+.....+..... .++... + .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~-~~lkp~---l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG-NMLKPA---L------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH-HHhcch---h------hcCCCeEE
Confidence 88875 45778899999999988654 468899999999998765443333322 222111 1 24678999
Q ss_pred EecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000978 1046 AATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1046 aTTN~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
++|+..+ .+|+++.|||. .|.+..|+.+++..|++.+...
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 9998764 58999999996 6889999999999999987654
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=99.43 E-value=2.7e-12 Score=155.40 Aligned_cols=185 Identities=26% Similarity=0.372 Sum_probs=131.7
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+++++.|.+.+++.|..++.... + ..+.+++||+||||+|||++|+++|++++++++.+++++...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 478999999999999999886321 1 234578999999999999999999999999999999876432
Q ss_pred cccHHHHHHHHHHHHh------cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 978 GEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
...+..+...+.. ..+.||+|||+|.|.+..+ .. .++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~----~~~aL~~~l~~------~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RG----GARAILELIKK------AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hh----HHHHHHHHHHc------CCCCEEEeccCc
Confidence 1223333333322 2467999999998854211 11 22333333332 223456678888
Q ss_pred CCCcH-HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHH
Q 000978 1052 FDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 1113 (1203)
Q Consensus 1052 ~~Ld~-aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L 1113 (1203)
..+.. .+++|+ ..|.|+.|+..++..+++.++..+++. ++..+..|+..+.|.....|..|
T Consensus 141 ~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 141 YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88887 566666 789999999999999999999887765 45568889998887555555444
No 114
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=1e-11 Score=144.53 Aligned_cols=201 Identities=19% Similarity=0.226 Sum_probs=127.5
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 971 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---------~~fi~I~~se 971 (1203)
+++.|.+...+.|...+...+. + ..+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4688999888888887753111 1 2235799999999999999999998762 6788889865
Q ss_pred ccc----------ccc--cc--------cHHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 972 ITS----------KWF--GE--------GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 972 L~s----------~~~--G~--------~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
..+ .+. |. .......++..... ..+.||+|||+|.|.+.. ..++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 422 110 10 12233444444432 346799999999996221 1234444433
Q ss_pred hcCCcccCCccEEEEEecCCCC---CCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCchhHHHH---HH
Q 000978 1031 WDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAI---AN 1100 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~~I~v~~Pd~eeR~eIL~~~l~~~---~l~~d~dl~~L---A~ 1100 (1203)
++. ....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+... ....+..++.+ +.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236788999998875 57888888885 578999999999999999988631 11223333343 44
Q ss_pred HcCCCcHHHHHHHHHHHHHHHH
Q 000978 1101 MTDGYSGSDLKNLCVTAAHRPI 1122 (1203)
Q Consensus 1101 ~T~G~Sg~DL~~L~~~Aa~~ai 1122 (1203)
.+.|... ...++|..|+..+.
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~ 255 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAE 255 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHH
Confidence 4456444 44456777766553
No 115
>PLN03025 replication factor C subunit; Provisional
Probab=99.43 E-value=3.4e-12 Score=146.68 Aligned_cols=180 Identities=22% Similarity=0.234 Sum_probs=123.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-----~~fi~I~~seL 972 (1203)
.+++++.|.+++.+.|+.++.. + ...++||+||||||||++|+++|+++. ..++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 4799999999999999887652 1 123799999999999999999999982 23556665543
Q ss_pred ccccccccHHHHHHHHHH-HHh------cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 973 TSKWFGEGEKYVKAVFSL-ASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~-A~k------~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
.+ ...++..... +.. ..+.||+|||+|.|. ...+.+ |+..++.. ...+.+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~a-------L~~~lE~~----~~~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQA-------LRRTMEIY----SNTTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHH-------HHHHHhcc----cCCceEE
Confidence 21 1123332221 111 235799999999883 222233 23333322 2334566
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHH
Q 000978 1046 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1046 aTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~ 1115 (1203)
.++|....+.+++++|+ ..+.|..|+.++....++..++++++. .+..+..|+..+.|-.. .+.+.++
T Consensus 134 l~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR-~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR-QALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 67888888889999998 689999999999999999999887765 45667888888877444 3333344
No 116
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.42 E-value=2.4e-12 Score=150.15 Aligned_cols=179 Identities=26% Similarity=0.374 Sum_probs=127.4
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 979 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G-~ 979 (1203)
-++|+++.++.+...+.....+........-..++++|||+||||+|||++|++||..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4679999999887776643222211111111223489999999999999999999999999999999988763 6777 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000978 980 GEKYVKAVFSLAS------------------------------------------------------------------- 992 (1203)
Q Consensus 980 ~e~~I~~lF~~A~------------------------------------------------------------------- 992 (1203)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666665540
Q ss_pred ------------------------------------------------------------------------hcCCceEE
Q 000978 993 ------------------------------------------------------------------------KIAPSVIF 1000 (1203)
Q Consensus 993 ------------------------------------------------------------------------k~~PsILf 1000 (1203)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12457999
Q ss_pred EccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc------ccCCccEEEEEecC----CCCCCcHHHHhcccccccCCC
Q 000978 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------TKDTERILVLAATN----RPFDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~------~~~~~~VlVIaTTN----~p~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
|||||.++.+....+....-.-+.+.||..++|-. .-+..++++|++.. .|.+|-|+|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 99999998654221111111235666777776632 22347889998753 577888999999999999999
Q ss_pred CCHHHHHHHH
Q 000978 1071 PDAPNRAKIL 1080 (1203)
Q Consensus 1071 Pd~eeR~eIL 1080 (1203)
++.++...||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999988
No 117
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.42 E-value=2.2e-12 Score=165.05 Aligned_cols=184 Identities=22% Similarity=0.371 Sum_probs=138.8
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.++.+.|.++..+.+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 466788999888888877652 233589999999999999999999987 47899999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
+..++ .+|.|+.+..++.++..+....+.||||||||.|++.....+..... .++...+ .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp~l---------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKPAL---------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHHHH---------hCCCcEEEE
Confidence 88775 46788999999999999988888999999999998765433322221 2222211 246688888
Q ss_pred ecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----CCCC-CchhHHHHHHHcCCCcH
Q 000978 1047 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1047 TTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~----~~l~-~d~dl~~LA~~T~G~Sg 1107 (1203)
+|+.. ...++++.+||. .|.+..|+.++...|++.+... ..+. .+..+..++.++.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 88865 357899999995 6789999999999999876532 2222 45557778888877754
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.42 E-value=6.6e-12 Score=148.84 Aligned_cols=167 Identities=21% Similarity=0.337 Sum_probs=110.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHH-HHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~-~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
+.++||||+|+|||+|++++++++ +..++++++.++...+...... .+. .|....+ ...+|+||||+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKME-EFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHH-HHHHHHH-hCCEEEEehhhhhcCC
Confidence 569999999999999999999987 5778899887765443322111 111 1222222 3579999999988543
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC---CCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000978 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1011 r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~--~I~v~~Pd~eeR~eIL~~~l~ 1085 (1203)
. ..+..+..+++.+. + ....+||+++..|. .+++.+++||.. .+.++.|+.++|..|++..+.
T Consensus 215 ~---~~~~~l~~~~n~~~---~------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 E---RTQEEFFHTFNALH---E------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred H---HHHHHHHHHHHHHH---H------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 11222222233221 1 12345555555554 366889999964 689999999999999999998
Q ss_pred hCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1086 ~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
..++. ++..++.||....+ +.++|..++....
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 77655 56668889988876 5566666555443
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.4e-12 Score=154.55 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=133.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+.+.|+..+.. .+-+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 4799999999999999998763 1233568999999999999999999998641
Q ss_pred ---------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHH
Q 000978 964 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024 (1203)
Q Consensus 964 ---------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il 1024 (1203)
++.++... ...-..++.+.+.+... ...|+||||+|.|. ...+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHH
Confidence 22222211 11123455555554332 24699999999882 2335
Q ss_pred HHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcC
Q 000978 1025 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1103 (1203)
Q Consensus 1025 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~ 1103 (1203)
+.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|++.+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5666666552 356677777777888888999999 789999999999999999999888766 3455788999888
Q ss_pred CCcHHHHHHHHHHHH
Q 000978 1104 GYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1104 G~Sg~DL~~L~~~Aa 1118 (1203)
| +.+++.+++..+.
T Consensus 217 G-slR~al~lLdq~i 230 (618)
T PRK14951 217 G-SMRDALSLTDQAI 230 (618)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5566666665443
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.7e-12 Score=153.10 Aligned_cols=184 Identities=21% Similarity=0.279 Sum_probs=133.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4799999999999999988763 2333568999999999999999999999652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++.+. ......++.+...+... ...|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHH
Confidence 22222211 11233456666655432 34699999999882 234456666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.+...+..+++. .+..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 356777777777888888899998 789999999999999999988877765 34457888888887 556
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.+++..|.
T Consensus 216 ~al~lldqai 225 (527)
T PRK14969 216 DALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=4.6e-12 Score=149.21 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=127.3
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------- 963 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~--------------- 963 (1203)
.|++|+|++.+++.|++.+......+..+ + .+.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 47899999999999999997643322211 1 1234789999999999999999999988543
Q ss_pred --------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh
Q 000978 964 --------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031 (1203)
Q Consensus 964 --------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l 1031 (1203)
+..+.... . .-.-..++.+++.+... ...|+||||+|.|- ....+.|+..+
T Consensus 79 ~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHh
Confidence 11221111 0 11123467777776543 34699999999882 12235566666
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHH
Q 000978 1032 DGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLK 1111 (1203)
Q Consensus 1032 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~ 1111 (1203)
+.. +.++++|.+|+.++.+.+.+++|+ ..+.|++|+.++..+++... .++. ......++..+.|..+..+.
T Consensus 142 Eep----~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP----PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC----CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 553 234455555555899999999999 78999999999887777632 2333 44567889999998887766
Q ss_pred HHHH
Q 000978 1112 NLCV 1115 (1203)
Q Consensus 1112 ~L~~ 1115 (1203)
.+..
T Consensus 213 l~~~ 216 (394)
T PRK07940 213 LATD 216 (394)
T ss_pred HhcC
Confidence 5543
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.41 E-value=2.3e-12 Score=165.40 Aligned_cols=184 Identities=21% Similarity=0.361 Sum_probs=134.7
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.++.+.|.++....+.+.+.. +..++++|+||||+|||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 456788888876666665542 223578999999999999999999886 67888888
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
+..++ ..+.|+.+..++.+|..+.+. .+.|||||||+.|++.....+.... .+.|.-.+ .++.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDA----GNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHH----HHHhchhh------hcCceEEE
Confidence 87765 467788899999999988764 5899999999999865433222222 22221111 24678999
Q ss_pred EecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-----CchhHHHHHHHcCCCcH
Q 000978 1046 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1046 aTTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-----~d~dl~~LA~~T~G~Sg 1107 (1203)
++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+....... .+..+..++.++.+|..
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 998865 468999999995 68999999999999999876654322 34456667777766643
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=1.2e-11 Score=145.61 Aligned_cols=225 Identities=18% Similarity=0.210 Sum_probs=142.1
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 974 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s 974 (1203)
.+.+.|-++..+.|...+...+. ...+.+++|+||||+|||++++.+++++ ++.+++++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35677888887887777642111 1123579999999999999999999887 57899999864321
Q ss_pred ----------cccc--------ccHHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc
Q 000978 975 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1203)
Q Consensus 975 ----------~~~G--------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~ 1035 (1203)
...+ .....+..+.....+ ..+.||+|||+|.+.... . ..++..|+..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhccC
Confidence 1111 112333444443333 345799999999986211 1 123445554444432
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCchhHHHHHHHcCCCc--
Q 000978 1036 TKDTERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTDGYS-- 1106 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~~I~v~~Pd~eeR~eIL~~~l~~~---~l~~d~dl~~LA~~T~G~S-- 1106 (1203)
..++.+|+++|.. +.+++.+.+||. ..|.|++++.++..+|++..+... ....+..++.+++.+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2378888888865 357788888874 568999999999999999987542 1224445677777774322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccc
Q 000978 1107 GSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1171 (1203)
Q Consensus 1107 g~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~ 1171 (1203)
.+.+..+|..|+..+..+ ....|+.+|+.+|+..+..+.
T Consensus 248 ~r~a~~ll~~a~~~a~~~--------------------------~~~~I~~~~v~~a~~~~~~~~ 286 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE--------------------------GSRKVTEEDVRKAYEKSEIVH 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHHHHH
Confidence 233345666665443321 113578888888888774443
No 124
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=2.4e-12 Score=150.23 Aligned_cols=180 Identities=23% Similarity=0.369 Sum_probs=128.0
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 979 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G-~ 979 (1203)
.+.|+++.++.+...+.....+..+........++.+|||+||||+|||+||++||+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3679999999988777543222211111111122478999999999999999999999999999999988874 5777 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000978 980 GEKYVKAVFSLAS------------------------------------------------------------------- 992 (1203)
Q Consensus 980 ~e~~I~~lF~~A~------------------------------------------------------------------- 992 (1203)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666666551
Q ss_pred ---------------------------------------------------------------------h--cCCceEEE
Q 000978 993 ---------------------------------------------------------------------K--IAPSVIFV 1001 (1203)
Q Consensus 993 ---------------------------------------------------------------------k--~~PsILfI 1001 (1203)
. ...+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13469999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc------cCCccEEEEEec----CCCCCCcHHHHhcccccccCCCC
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~~I~v~~P 1071 (1203)
||||.++.+..+.+....-.-+.+.||..++|-.. -+..++++||+. ..|.+|-|+|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986643221111112366677777776321 234789999875 35678889999999999999999
Q ss_pred CHHHHHHHHH
Q 000978 1072 DAPNRAKILQ 1081 (1203)
Q Consensus 1072 d~eeR~eIL~ 1081 (1203)
+.++..+||.
T Consensus 336 ~~~dL~~ILt 345 (443)
T PRK05201 336 TEEDFVRILT 345 (443)
T ss_pred CHHHHHHHhc
Confidence 9999999983
No 125
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.1e-11 Score=150.91 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=130.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|++++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4799999999999999888763 223356999999999999999999998854
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.++.++...- . .-..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHH
Confidence 2333332111 1 11234445444432 245699999999882 234455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..++|..++.++....++..+.++++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 345666666677888888899999 789999999999999999988887765 44557888888876 555
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.+++..+.
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 5556655544
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=4.4e-12 Score=149.55 Aligned_cols=222 Identities=21% Similarity=0.299 Sum_probs=139.5
Q ss_pred cccccHHHHHHHHHHHhCccCchhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KW 976 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f-~k---~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~ 976 (1203)
.++|+++.++.+...+.....+.... .. .+......+|||+||||+|||++|+++|..++.+|+.+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 35799999998877663222221100 00 001122368999999999999999999999999999999887753 47
Q ss_pred cccc-HHHHHHHHHHH----HhcCCceEEEccchhhccCCCCCchh-HH-HHHHHHHHHHhhcCCcc---------cCCc
Q 000978 977 FGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT---------KDTE 1040 (1203)
Q Consensus 977 ~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~-~a-l~~il~eLL~~ldgl~~---------~~~~ 1040 (1203)
+|.. +..+..++..+ .+..++||||||||.+..++.++... .. -..+.+.||..+++... .+..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 44444444322 34467899999999997654332111 11 01355566666654321 1235
Q ss_pred cEEEEEecCCCC--------------------------------------------------CCcHHHHhcccccccCCC
Q 000978 1041 RILVLAATNRPF--------------------------------------------------DLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1041 ~VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRFd~~I~v~~ 1070 (1203)
+.++|+|+|-.+ .+.|+|+.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 678888877510 144778889999999999
Q ss_pred CCHHHHHHHHHHH----Hhh-------CCCC---CchhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHH
Q 000978 1071 PDAPNRAKILQVI----LAK-------EDLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIK 1123 (1203)
Q Consensus 1071 Pd~eeR~eIL~~~----l~~-------~~l~---~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~air 1123 (1203)
.+.++..+|+... +++ .++. .+..++.|++.. ..+..+.|+.+++......+-
T Consensus 318 L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 318 LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 9999999998763 221 1211 233456676652 355566676666665554443
No 127
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=9.8e-12 Score=150.66 Aligned_cols=183 Identities=21% Similarity=0.287 Sum_probs=131.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+++.|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 5799999999999999988863 2233557999999999999999999998531
Q ss_pred ---------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 964 ---------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 964 ---------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+..
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHH
Confidence 33444321 1112334555444332 245799999999762 2334555555
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHH
Q 000978 1031 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSD 1109 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~D 1109 (1203)
++.. ...+++|.+++.+..+.+.+.+|+ ..+.|..|+.++...+++.++.+.++. .+..+..|+..+.|.. ++
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl-R~ 213 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM-RD 213 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HH
Confidence 5542 345777777888899999999998 579999999999999999999888765 4456788999988744 45
Q ss_pred HHHHHHHH
Q 000978 1110 LKNLCVTA 1117 (1203)
Q Consensus 1110 L~~L~~~A 1117 (1203)
+.++++.+
T Consensus 214 aln~Lekl 221 (504)
T PRK14963 214 AESLLERL 221 (504)
T ss_pred HHHHHHHH
Confidence 55555544
No 128
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.6e-12 Score=152.27 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=126.9
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc--------
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 972 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL-------- 972 (1203)
.|=.|++++|+++.+++.-+... ..... .-++|+||||+|||+|++.||+.++..|++++...+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 35679999999999998642221 11111 248999999999999999999999999999987554
Q ss_pred -ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHH-----HHHhhcCCcccCCccEEEEE
Q 000978 973 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 973 -~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~e-----LL~~ldgl~~~~~~~VlVIa 1046 (1203)
...|+|+....+-+-...|....| +++|||||.|... .......++..++.- |..+.-.+.. +-.+|++|+
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFia 471 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIA 471 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEe
Confidence 235888888888888888877665 8899999999532 222233343333321 1111111111 236899999
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHH
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1084 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l 1084 (1203)
|+|..+.++..|+.|+ .+|.+.-++.++..+|.+.+|
T Consensus 472 TANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999999 799999999999999999876
No 129
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.3e-11 Score=151.08 Aligned_cols=179 Identities=19% Similarity=0.258 Sum_probs=127.7
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++|+|++.+++.|...+.. .+-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 5799999999999999988863 1223589999999999999999999999652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++...- ..-..++.+.+.+. .....||||||+|.|- ...++.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHH
Confidence 333433210 01122333332222 2345799999999882 233455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. ..++++|.+|+.+..+.+.+++|+ .+|.|..++.++...+|+..+...++. .+..+..|++.+.|....
T Consensus 142 ~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~ 216 (624)
T PRK14959 142 TLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRD 216 (624)
T ss_pred Hhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 66542 346788888888888888999998 578999999999999999988887753 455678889988875544
Q ss_pred HHHH
Q 000978 1109 DLKN 1112 (1203)
Q Consensus 1109 DL~~ 1112 (1203)
.+..
T Consensus 217 Al~l 220 (624)
T PRK14959 217 SMSL 220 (624)
T ss_pred HHHH
Confidence 4433
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.3e-11 Score=151.69 Aligned_cols=183 Identities=24% Similarity=0.338 Sum_probs=133.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 5799999999999999988763 233467999999999999999999998843
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
+++.++.+. ...-..++.+.+.+... ...|+||||+|.|. ...++.|+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLK 141 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLK 141 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHH
Confidence 344444321 12234466666655432 35699999999882 224556666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.| +.+
T Consensus 142 tLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 356677777777899999999999 578899999999999999999887765 34557888988887 555
Q ss_pred HHHHHHHHH
Q 000978 1109 DLKNLCVTA 1117 (1203)
Q Consensus 1109 DL~~L~~~A 1117 (1203)
+..+++..+
T Consensus 216 ~al~~Ldq~ 224 (559)
T PRK05563 216 DALSILDQA 224 (559)
T ss_pred HHHHHHHHH
Confidence 555555544
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=7.5e-12 Score=158.56 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=127.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++|+|++.+++.|+..+.. .+..+.+||+||+|+|||++|+.||+.+.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5799999999999999988763 2233569999999999999999999999642
Q ss_pred ------------EEEEeccccccccccccHHHHHHHHHH----HHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHH
Q 000978 964 ------------FINISMSSITSKWFGEGEKYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1203)
Q Consensus 964 ------------fi~I~~seL~s~~~G~~e~~I~~lF~~----A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eL 1027 (1203)
|+.++..... .-..++.+... .......|+||||+|.|- ....+.|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaL 140 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNAL 140 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHH
Confidence 2333321110 11223333222 233456799999999882 2345566
Q ss_pred HHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCc
Q 000978 1028 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1028 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~S 1106 (1203)
+..|+.. ...+++|++|+.++.|-+.|++|+ .++.|..++.++..++|+.++.++++. .+..+..|++.+.| +
T Consensus 141 LK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6666653 356777777788888989999998 788999999999999999999887765 34446777777776 4
Q ss_pred HHHHHHHHH
Q 000978 1107 GSDLKNLCV 1115 (1203)
Q Consensus 1107 g~DL~~L~~ 1115 (1203)
.+++.++++
T Consensus 215 lR~Al~eLE 223 (824)
T PRK07764 215 VRDSLSVLD 223 (824)
T ss_pred HHHHHHHHH
Confidence 444444443
No 132
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.38 E-value=1.8e-11 Score=140.52 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=120.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-----~~fi~I~~seL 972 (1203)
.+|+++.|.+.+++.|..++.. . . ..++||+||||||||++|+++++++. .+++.+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~----------~---~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS----------P---N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC----------C---C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 4689999999999999887752 1 1 13799999999999999999999983 35778887765
Q ss_pred cccc-------------ccc-------cHHHHHHHHHHHHh-----cCCceEEEccchhhccCCCCCchhHHHHHHHHHH
Q 000978 973 TSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1203)
Q Consensus 973 ~s~~-------------~G~-------~e~~I~~lF~~A~k-----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eL 1027 (1203)
.... .+. ....++.+...... ..+.+|+|||+|.+. .. ..+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~-------~~~~L 145 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----ED-------AQQAL 145 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HH-------HHHHH
Confidence 3211 000 01223333323222 234699999999772 11 12223
Q ss_pred HHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCc
Q 000978 1028 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1028 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~S 1106 (1203)
...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+...++. ++..++.|+..+.| .
T Consensus 146 ~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-d 219 (337)
T PRK12402 146 RRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-D 219 (337)
T ss_pred HHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 33333321 22344555655667778888897 678999999999999999998887765 45667888888755 3
Q ss_pred HHHHHHH
Q 000978 1107 GSDLKNL 1113 (1203)
Q Consensus 1107 g~DL~~L 1113 (1203)
.+++.+.
T Consensus 220 lr~l~~~ 226 (337)
T PRK12402 220 LRKAILT 226 (337)
T ss_pred HHHHHHH
Confidence 3333333
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=3.3e-11 Score=131.63 Aligned_cols=200 Identities=19% Similarity=0.220 Sum_probs=126.6
Q ss_pred Cccccccc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000978 897 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1203)
Q Consensus 897 ~vt~~dI~--Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se 971 (1203)
..+|+++. +.+.+...++.+... ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 35677755 345555666555431 1223579999999999999999999876 67888888766
Q ss_pred cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCcc-EEEEEecCC
Q 000978 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 1050 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~-VlVIaTTN~ 1050 (1203)
+... + .......+|+|||+|.+- ...+..+..+++.+ . .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~----~-----~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLD-----DAQQIALFNLFNRV----R-----AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcC-----chHHHHHHHHHHHH----H-----HcCCcEEEEeCCCC
Confidence 4321 1 112245799999999772 22223333333322 1 1233 344444333
Q ss_pred C--CCCcHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 000978 1051 P--FDLDEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1203)
Q Consensus 1051 p--~~Ld~aLlrRF--d~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel 1125 (1203)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+....++. ++..++.|++...| +.+++..+++.....+..
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~-- 209 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE-- 209 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH--
Confidence 3 24568888888 4688999999999999999887766655 44557778876555 666776666643221111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 000978 1126 LEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 1165 (1203)
Q Consensus 1126 ~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~ 1165 (1203)
..++|+...+++++.
T Consensus 210 -------------------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 -------------------------QKRPVTLPLLREMLA 224 (227)
T ss_pred -------------------------hCCCCCHHHHHHHHh
Confidence 236789888888875
No 134
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.3e-11 Score=151.46 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=127.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 4799999999999999998863 2333458999999999999999999988632
Q ss_pred ------------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHH
Q 000978 964 ------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1203)
Q Consensus 964 ------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eL 1027 (1203)
++.++.+.. ..-..++.+.+.+. .....|+||||+|.|- ....+.|
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NAL 138 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNAL 138 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHH
Confidence 223322211 01223444433332 2245699999999882 2345566
Q ss_pred HHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCc
Q 000978 1028 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1028 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~S 1106 (1203)
+..++.. ...+++|.+|+.+..+.+.+++|+ .++.|..++.++..++++.++.++++. ++..+..|++.+.| +
T Consensus 139 LK~LEEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 139 LKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6666653 456788878888889999999997 789999999999999999999887764 34456777777776 3
Q ss_pred HHHHHHHHH
Q 000978 1107 GSDLKNLCV 1115 (1203)
Q Consensus 1107 g~DL~~L~~ 1115 (1203)
.+++.++++
T Consensus 213 lR~aln~Ld 221 (584)
T PRK14952 213 PRDTLSVLD 221 (584)
T ss_pred HHHHHHHHH
Confidence 444444443
No 135
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.37 E-value=3.3e-11 Score=130.79 Aligned_cols=185 Identities=21% Similarity=0.260 Sum_probs=117.4
Q ss_pred ccccccc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000978 898 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~--Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL 972 (1203)
.+|+++. +.....+.+++++.. ....+++|+||+|||||++|+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4555554 456677777766531 223579999999999999999999887 578899998776
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.... ..++.... ...+|+|||+|.+.... .....+..+++.+ .. ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~----~~-----~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRV----RE-----AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHH----HH-----cCCeEEEECCCChH
Confidence 5321 12222222 34699999999873211 1122222222221 11 12234444443443
Q ss_pred CC--c-HHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000978 1053 DL--D-EAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1053 ~L--d-~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
.+ . +.+.+||. ..+.+++|+.+++..+++.++...++. ++..+..|++...| +.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 33 2 77888874 678899999999999999887765544 44456777776444 77788877766543
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.36 E-value=8.5e-12 Score=138.49 Aligned_cols=185 Identities=23% Similarity=0.300 Sum_probs=128.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEeccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMSS 971 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~------fi~I~~se 971 (1203)
.+|+++.|++.+.+.|+..+.. +-..++|||||||||||+.|+++|.++..+ +...+.++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 5799999999999999988763 112489999999999999999999999652 23344444
Q ss_pred cccccccc-cHHHHHHHHHHH-----HhcC-CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEE
Q 000978 972 ITSKWFGE-GEKYVKAVFSLA-----SKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1203)
Q Consensus 972 L~s~~~G~-~e~~I~~lF~~A-----~k~~-PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlV 1044 (1203)
..+..++. .-+...++.... +-.+ +.||+|||.|.|. ...+.++++++ +.. ...+.+
T Consensus 99 erGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~m-------E~~----s~~trF 162 (346)
T KOG0989|consen 99 ERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTM-------EDF----SRTTRF 162 (346)
T ss_pred cccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHH-------hcc----ccceEE
Confidence 33322111 111111111111 1112 2699999999983 23334444443 332 356788
Q ss_pred EEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-chhHHHHHHHcCCCcHHHHHHH
Q 000978 1045 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKNL 1113 (1203)
Q Consensus 1045 IaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~-d~dl~~LA~~T~G~Sg~DL~~L 1113 (1203)
|..||..+.|...+.+|+ ..+.|.....+.....|+.++.++++.- +..+..|+..++|--.+.+..|
T Consensus 163 iLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred EEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 888999999999999999 5788888888889999999999998874 4457888998888655554433
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=2.7e-11 Score=145.04 Aligned_cols=214 Identities=18% Similarity=0.263 Sum_probs=132.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1013 (1203)
++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|....+ ...||+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 579999999999999999999987 688888887766443322211111123433333 56899999999884322
Q ss_pred CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1014 ~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
..++.+..+++.+.. .++.+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...+
T Consensus 219 -~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 123333344444321 12345555555453 56789999995 6788899999999999999988876
Q ss_pred CC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHH
Q 000978 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR-PIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHER 1166 (1203)
Q Consensus 1089 l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~-airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~ 1166 (1203)
+. ++..++.|+....+ ..++|...+...+.. +..++ ..++++++++++++..
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLHD 342 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHHH
Confidence 54 45556778887775 344555444443221 11111 2256888888888887
Q ss_pred hcccccc-cccchhhhHHHHHHhc
Q 000978 1167 VCASVSS-ESVNMSELLQWNELYG 1189 (1203)
Q Consensus 1167 v~pS~s~-e~~~~~~~v~W~di~G 1189 (1203)
+...-.. ......=...|.+.||
T Consensus 343 ~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 343 VLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred hhhcccCCCCCHHHHHHHHHHHhC
Confidence 6332211 1111223445666677
No 138
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=2.3e-11 Score=141.02 Aligned_cols=184 Identities=24% Similarity=0.349 Sum_probs=130.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|.+.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5789999999999999987752 2234679999999999999999999997432
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++... ......++.++..+... ...||+|||+|.+. ....+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~ 139 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLK 139 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHH
Confidence 33333221 11233456666665443 23599999999872 123455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++...++. ++..+..|+..+.| +.+
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 66543 345777777888888888999998 578999999999999999999887754 34557778888876 445
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
.+.+.++.+.
T Consensus 214 ~a~~~lekl~ 223 (355)
T TIGR02397 214 DALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 139
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=6.4e-11 Score=130.65 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=114.2
Q ss_pred Cccccccc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000978 897 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1203)
Q Consensus 897 ~vt~~dI~--Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se 971 (1203)
..+|+++. ....+...+...... .....++|+||+|+|||+|++++++++ +..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34666665 344455555554321 112479999999999999999999876 44455555543
Q ss_pred cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCcc-EEEEEecCC
Q 000978 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 1050 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~-VlVIaTTN~ 1050 (1203)
... ....+...... ..+|+||||+.+.++. ..+..+..+++.+ ++ .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---~~~~~lf~l~n~~---~e------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---LWEMAIFDLYNRI---LE------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---HHHHHHHHHHHHH---HH------cCCCeEEEeCCCC
Confidence 211 11122222222 3689999999884321 1122333333333 21 223 355555556
Q ss_pred CCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1051 PFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1051 p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
|.. +.+.+++|+. .++.+..|+.+++.++++..+...++. ++..++.|++...| +.+.+..++..
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 554 5799999995 678899999999999999877766554 55667889998887 55566555554
No 140
>PRK06893 DNA replication initiation factor; Validated
Probab=99.35 E-value=2.3e-11 Score=133.62 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=100.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1013 (1203)
..++|+||||||||+|++++|+++ +..+.++++.... .....++.... ...+|+||||+.+.+...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~ 109 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEEW 109 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCChHH
Confidence 368999999999999999999987 4455555543211 11112233222 4579999999988543211
Q ss_pred CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc---HHHHhcc--cccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---EAVIRRL--PRRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1014 ~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld---~aLlrRF--d~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
...+..+++.+ .. .+..++|++++..|..++ +.+.+|+ +..+.++.|+.++|.+|++..+...+
T Consensus 110 ---~~~l~~l~n~~-------~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 110 ---ELAIFDLFNRI-------KE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ---HHHHHHHHHHH-------HH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11222222222 11 123345555666666554 7899876 45788999999999999999887666
Q ss_pred CC-CchhHHHHHHHcCCCcHHHHHHHHH
Q 000978 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1089 l~-~d~dl~~LA~~T~G~Sg~DL~~L~~ 1115 (1203)
+. ++..++.|++...| +.+.+..++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 54 55567889998876 4445544444
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.8e-11 Score=149.21 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=131.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++++++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5799999999999999988763 2334678999999999999999999998542
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++...- ..-..++.+...+... ...|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHH
Confidence 333332211 1123455555554322 34699999999882 223455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++...++. ++..+..|++.+.|- .+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~-lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS-MR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HH
Confidence 66543 356778888888899999999999 689999999999999999998887765 455678889998874 44
Q ss_pred HHHHHHHH
Q 000978 1109 DLKNLCVT 1116 (1203)
Q Consensus 1109 DL~~L~~~ 1116 (1203)
++.+++..
T Consensus 216 ~al~~Ldq 223 (576)
T PRK14965 216 DSLSTLDQ 223 (576)
T ss_pred HHHHHHHH
Confidence 55454443
No 142
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.34 E-value=3.6e-12 Score=113.35 Aligned_cols=67 Identities=30% Similarity=0.519 Sum_probs=59.7
Q ss_pred EEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEEEe
Q 000978 147 FTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVFG 216 (1203)
Q Consensus 147 ~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~f~ 216 (1203)
|+|||+..||++|.++.||..||.|..... ..+||+|+ |.|||||||+++.++..+.|++||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999987644 45899998 58999999999999999999999999884
No 143
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.34 E-value=4.2e-11 Score=147.61 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=119.1
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 970 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~~s 970 (1203)
+.|.+-++..+.|..++...+. + ..|...++|+|+||||||++++.+..++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4678888888888877753222 1 1232345799999999999999998776 2668899995
Q ss_pred ccccc----------ccc-------ccHHHHHHHHHHHH--hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh
Q 000978 971 SITSK----------WFG-------EGEKYVKAVFSLAS--KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031 (1203)
Q Consensus 971 eL~s~----------~~G-------~~e~~I~~lF~~A~--k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l 1031 (1203)
.+... +.+ .....+..+|.... .....||+|||||.|... .+.. +-.|+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDV----LYnLFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKV----LFTLFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHH----HHHHHHH-
Confidence 43211 111 12234566666542 223569999999999532 1222 2222221
Q ss_pred cCCcccCCccEEEEEecCC---CCCCcHHHHhcccc-cccCCCCCHHHHHHHHHHHHhhC-CCCCchhHHHHHHHcC
Q 000978 1032 DGLRTKDTERILVLAATNR---PFDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKE-DLSPDVDFDAIANMTD 1103 (1203)
Q Consensus 1032 dgl~~~~~~~VlVIaTTN~---p~~Ld~aLlrRFd~-~I~v~~Pd~eeR~eIL~~~l~~~-~l~~d~dl~~LA~~T~ 1103 (1203)
.. ....+++|||++|. +..|++.+++||.. +|.|++++.+++.+||+..+... .+..+..++.+|+...
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 11 12467999999986 45677888888864 48899999999999999988753 2334555666776443
No 144
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.34 E-value=2.6e-11 Score=132.72 Aligned_cols=190 Identities=23% Similarity=0.344 Sum_probs=137.1
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~ 973 (1203)
.+.++++.|++..++.|.+-... |.++ .|.+++||+|++|||||++++++.++. |..+|.+...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 47899999999999998876643 3333 477899999999999999999999887 7778888766553
Q ss_pred cccccccHHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
. +..++...+. ..+-|||+|++- + ...+. -...|...++|.....+.+|+|.||+|+..
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 4455555443 345799999874 2 11111 124455667887667789999999999743
Q ss_pred CC---------------cH--------HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-hhH----HHHHHHcCC
Q 000978 1053 DL---------------DE--------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDF----DAIANMTDG 1104 (1203)
Q Consensus 1053 ~L---------------d~--------aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d-~dl----~~LA~~T~G 1104 (1203)
.+ .+ .+..||+.+|.|..|+.++-.+|++.++...++.-+ .++ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 22 11 344599999999999999999999999988877643 233 234555667
Q ss_pred CcHHHHHHHHHH
Q 000978 1105 YSGSDLKNLCVT 1116 (1203)
Q Consensus 1105 ~Sg~DL~~L~~~ 1116 (1203)
.||+--.+.+..
T Consensus 233 RSGRtA~QF~~~ 244 (249)
T PF05673_consen 233 RSGRTARQFIDD 244 (249)
T ss_pred CCHHHHHHHHHH
Confidence 888766555443
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=4.1e-11 Score=137.04 Aligned_cols=175 Identities=19% Similarity=0.218 Sum_probs=115.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+++++.|.+.+++.++..+.. .+.+..+||+||||+|||++|++++++++.+++.+++.+ .. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 5799999999999999888752 122345777999999999999999999999999998876 11 1
Q ss_pred cccHHHHHHHHHHHH-hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcH
Q 000978 978 GEGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1056 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~ 1056 (1203)
......+........ ...+.||||||+|.+.. .. ....+.. .++.. ..++.+|+|+|.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~-~~~~L~~---~le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------AD-AQRHLRS---FMEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HH-HHHHHHH---HHHhc----CCCceEEEEcCChhhchH
Confidence 111111211111111 12468999999997721 01 1122222 23332 245678889999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhh-------CCCC-CchhHHHHHHHcCC
Q 000978 1057 AVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS-PDVDFDAIANMTDG 1104 (1203)
Q Consensus 1057 aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~-------~~l~-~d~dl~~LA~~T~G 1104 (1203)
++++|| ..+.++.|+.+++..+++.++.. .+.. .+..+..++....|
T Consensus 147 ~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 147 PLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred HHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 999999 57899999999998887654332 2322 22334666665554
No 146
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.33 E-value=1.6e-11 Score=155.54 Aligned_cols=205 Identities=18% Similarity=0.273 Sum_probs=134.1
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-------
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------- 973 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~------- 973 (1203)
.+..|++++|+.+.+++...... . ......++|+||||+|||++++.+|..++.+|+++++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 35889999999999887642211 1 11224699999999999999999999999999999876542
Q ss_pred --cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-----------ccCCc
Q 000978 974 --SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDTE 1040 (1203)
Q Consensus 974 --s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-----------~~~~~ 1040 (1203)
..|.|.....+.+.+..+.... .||+|||||.+.... ..... ..|+..++.-. .-+-.
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~-~g~~~-------~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDM-RGDPA-------SALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhccccc-CCCHH-------HHHHHHhccccEEEEecccccccccCC
Confidence 2355555555666665554333 489999999985331 11112 22333333200 11337
Q ss_pred cEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-----CCCC------CchhHHHHHH-HcCCCcHH
Q 000978 1041 RILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-----EDLS------PDVDFDAIAN-MTDGYSGS 1108 (1203)
Q Consensus 1041 ~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~-----~~l~------~d~dl~~LA~-~T~G~Sg~ 1108 (1203)
++++|||+|.. .++++|++|| .+|.+..++.++..+|++.++.. .++. .+..+..|++ .+..+-.+
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 89999999987 5999999999 58999999999999999988741 1111 1222444443 22344456
Q ss_pred HHHHHHHHHHHHHHHH
Q 000978 1109 DLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1109 DL~~L~~~Aa~~aire 1124 (1203)
.|+.+++..+...+.+
T Consensus 543 ~LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 543 SLEREISKLCRKAVKQ 558 (784)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665544444433
No 147
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4.1e-11 Score=146.13 Aligned_cols=182 Identities=20% Similarity=0.289 Sum_probs=129.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|+++.|++.+.+.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4799999999999999887753 233467999999999999999999999843
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.++.++.+.. ..-..++.+...+... ...|++|||+|.|- ....+.|+.
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLLK 141 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALLK 141 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHHH
Confidence 2333332210 1123355555554432 34699999999882 123355655
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+++|.+|+.+..+.+.+++|+ .++.|..++.++...+++..+.+.+.. ++..+..|+.++.|. .+
T Consensus 142 tLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-lR 215 (605)
T PRK05896 142 TLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-LR 215 (605)
T ss_pred HHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-HH
Confidence 55543 346777777788899999999999 589999999999999999998877653 455578888888874 44
Q ss_pred HHHHHHHH
Q 000978 1109 DLKNLCVT 1116 (1203)
Q Consensus 1109 DL~~L~~~ 1116 (1203)
++.++++.
T Consensus 216 ~AlnlLek 223 (605)
T PRK05896 216 DGLSILDQ 223 (605)
T ss_pred HHHHHHHH
Confidence 44444444
No 148
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=5e-11 Score=149.58 Aligned_cols=180 Identities=20% Similarity=0.353 Sum_probs=121.6
Q ss_pred cccccccccHHHHH---HHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 898 VTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~---~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+|+++.|.+.+.. .|++.+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 57899999999874 45555431 122479999999999999999999999999988886431
Q ss_pred ccccccHHHHHHHHHHHH-----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 975 KWFGEGEKYVKAVFSLAS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
....++..+..+. .....||||||||.|- ... .+.|+..++ ...+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~q-------QdaLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQ-------QDALLPWVE------NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHH-------HHHHHHHhc------CceEEEEEecC
Confidence 1112233333321 1245799999999882 111 122333332 24566666553
Q ss_pred --CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-------CCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1050 --RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1050 --~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~-------~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
....+++++++|+ .++.|++++.+++..+++..+.. ..+. ++..++.|++...| ..+.+.++++.|+
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3357889999997 67899999999999999998862 2222 34557888888866 4556666666654
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=6.3e-11 Score=143.22 Aligned_cols=184 Identities=22% Similarity=0.316 Sum_probs=127.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+++.|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 4799999999999999988863 2233568999999999999999999998531
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++.+. ...-..++.+.+.+... .+.|++|||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk 141 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLK 141 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHH
Confidence 12222111 01122345555444432 35699999999872 223455666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+++|.+|+.++.+.+++.+|+ ..+.|.+++.++...+++.++...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 234555556666778888999998 578999999999999999999887765 34557788888877 445
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.++++.+.
T Consensus 216 ~al~~Ldkl~ 225 (486)
T PRK14953 216 DAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6.1e-11 Score=145.45 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=131.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+++.|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 4799999999999999988863 2233579999999999999999999998542
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++... ...-..++.+.+.+. .....|++|||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK 141 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLK 141 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHH
Confidence 22222111 011233444443332 2345699999999882 234556666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+++|.+|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEEP----PPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhccC----CCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66642 356777777777888999999999 578999999999999999988877755 45567888888887 555
Q ss_pred HHHHHHHHH
Q 000978 1109 DLKNLCVTA 1117 (1203)
Q Consensus 1109 DL~~L~~~A 1117 (1203)
++.+++..+
T Consensus 216 ~alslLdkl 224 (563)
T PRK06647 216 DAYTLFDQV 224 (563)
T ss_pred HHHHHHHHH
Confidence 666665544
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=7.2e-11 Score=144.12 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=111.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1011 (1203)
+.++|||++|+|||+|+++|++++ +..++++++.+++..+...........|....+ .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999987 578899998887665543322222223443333 46899999999885433
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC-C---CCCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHh
Q 000978 1012 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-P---FDLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1012 ~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-p---~~Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~ 1085 (1203)
. .++.+..+++.+. . .++-+|| |++. + ..+++.|++||. .++.+..|+.+.|..||+..+.
T Consensus 394 ~---tqeeLF~l~N~l~-------e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S---TQEEFFHTFNTLH-------N--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H---HHHHHHHHHHHHH-------h--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1233334444432 1 1233444 5554 3 357889999995 4668899999999999999998
Q ss_pred hCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHH
Q 000978 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1086 ~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~A 1117 (1203)
..++. ++..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 87766 45557888888765 455666555443
No 152
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.2e-11 Score=145.49 Aligned_cols=189 Identities=22% Similarity=0.190 Sum_probs=132.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------c-
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M- 969 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~-------~- 969 (1203)
.+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 4799999999999999988763 234468999999999999999999999865321111 0
Q ss_pred -------------cccccc--cccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 970 -------------SSITSK--WFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 970 -------------seL~s~--~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
.+++.. -....-..++.+.+.+... ...|+||||+|.|- ....+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHH
Confidence 011000 0001123456666655433 35699999999882 2234556655
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHH
Q 000978 1031 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSD 1109 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~D 1109 (1203)
++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..+.+++.. .+..+..|++.+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5543 345666667777777888899999 679999999999999999999888765 34567788888887 5556
Q ss_pred HHHHHHHH
Q 000978 1110 LKNLCVTA 1117 (1203)
Q Consensus 1110 L~~L~~~A 1117 (1203)
+.++++.+
T Consensus 230 al~~Ldkl 237 (598)
T PRK09111 230 GLSLLDQA 237 (598)
T ss_pred HHHHHHHH
Confidence 66665554
No 153
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=4.8e-11 Score=148.07 Aligned_cols=188 Identities=21% Similarity=0.310 Sum_probs=131.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec-----
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM----- 969 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I---~~----- 969 (1203)
.+|+++.|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 5799999999999999988863 23346789999999999999999999985431100 00
Q ss_pred -----cccc-ccc-ccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccC
Q 000978 970 -----SSIT-SKW-FGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1038 (1203)
Q Consensus 970 -----seL~-s~~-~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~ 1038 (1203)
.+++ ..- .......++.+.+.+... ...|++|||+|.|- ....+.|+..++..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP---- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP---- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC----
Confidence 0000 000 001234466776666543 34699999999882 22455666666653
Q ss_pred CccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1039 TERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1039 ~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
+..+++|.+|+.++.|.+.+++|+ .++.|.+++.++...+++..+.+.++. .+..+..||..+.|-. +++..++..
T Consensus 146 P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLek 222 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAEQ 222 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 356777777788899999999999 589999999999999999988877765 3344778888888744 444444443
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=2e-11 Score=146.14 Aligned_cols=167 Identities=17% Similarity=0.313 Sum_probs=110.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccH-HHHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e-~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
++++||||+|+|||+|++++++++ +..++++++.++...+..... ..+. -|....+..+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776554332211 1111 233333346889999999988543
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHh
Q 000978 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1011 r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~ 1085 (1203)
.. .+..+..+++.+. + ....+||++...|.. +.+.+.+||. .++.+.+|+.+.|..|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~---~------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELH---D------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHH---H------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 1222223333332 1 233466655566654 5567888884 4677899999999999999987
Q ss_pred hCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHH
Q 000978 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1086 ~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~A 1117 (1203)
..++. ++..++.||....| +.++|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 65554 45567888888876 555666555443
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.6e-11 Score=141.52 Aligned_cols=182 Identities=20% Similarity=0.267 Sum_probs=127.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+...
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 5799999999999999888763 2334679999999999999999999988432
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHH----HhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHH
Q 000978 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1203)
Q Consensus 964 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL 1028 (1203)
++.++.... . .-..++.+.+.+ ....+.||||||+|.|. ....+.|+
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LL 142 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLL 142 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHH
Confidence 333332111 0 012233322222 23456899999999882 12345566
Q ss_pred HhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcH
Q 000978 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1029 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg 1107 (1203)
..++.. +..+++|.+|+.+..|.+.+++|+ ..+.|..++.++...+++..+.+.++. ++..+..|+..+.| +.
T Consensus 143 k~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dl 216 (451)
T PRK06305 143 KTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SL 216 (451)
T ss_pred HHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 346677777788888999999999 678999999999999999988877654 44567888888877 33
Q ss_pred HHHHHHHHH
Q 000978 1108 SDLKNLCVT 1116 (1203)
Q Consensus 1108 ~DL~~L~~~ 1116 (1203)
+.+.++++.
T Consensus 217 r~a~~~Lek 225 (451)
T PRK06305 217 RDAESLYDY 225 (451)
T ss_pred HHHHHHHHH
Confidence 444444443
No 156
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=5.9e-11 Score=137.36 Aligned_cols=244 Identities=14% Similarity=0.164 Sum_probs=139.6
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEE----
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFI---- 965 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-------~~fi---- 965 (1203)
...|.+|+|++++|..|...+.. ....+|||.|++|||||++|++++..+. .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 35699999999999998876653 2336899999999999999999987762 2332
Q ss_pred -----------------------------EEeccccccccccccHHHHHHHHHHHH---------hcCCceEEEccchhh
Q 000978 966 -----------------------------NISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 966 -----------------------------~I~~seL~s~~~G~~e~~I~~lF~~A~---------k~~PsILfIDEID~L 1007 (1203)
.+....-....+|... +...|.... +...++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD--~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTID--IEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCccc--HHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 1000000111111100 111111111 112479999999988
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhh--cCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCCC-HHHHHHHHHHH
Q 000978 1008 LGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPD-APNRAKILQVI 1083 (1203)
Q Consensus 1008 ~~~r~~~~~~~al~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~Pd-~eeR~eIL~~~ 1083 (1203)
++..+..+..++.+-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.+|++..
T Consensus 157 -----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 157 -----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred -----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 3222333222222211111 333333456899999999765 69999999999999999997 69999999886
Q ss_pred HhhCCCC----------CchhHHHHHH---HcCC--CcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000978 1084 LAKEDLS----------PDVDFDAIAN---MTDG--YSGSDLKNLCVTAA---HRPIKEILEKEKKERAAAMAEGKPAPA 1145 (1203)
Q Consensus 1084 l~~~~l~----------~d~dl~~LA~---~T~G--~Sg~DL~~L~~~Aa---~~airel~~~~~~~~~~a~~e~~~~~~ 1145 (1203)
....... .....+.|.. .... .+...+..+++.+. ....|..+...+.+++.+..+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR---- 307 (350)
T CHL00081 232 TSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGR---- 307 (350)
T ss_pred hccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCC----
Confidence 4311000 0111222222 2221 22222222322222 12234444444455666655554
Q ss_pred CCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1146 LSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1146 ~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
.-|+.+|+..+..-+.+...
T Consensus 308 -------~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 308 -------TEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred -------CCCCHHHHHHHHHHHHHHhC
Confidence 47999999999998766544
No 157
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.27 E-value=7.1e-11 Score=132.38 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=91.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccccHHH-HHH-------------------HHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-VKA-------------------VFSL 990 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se------L~s~~~G~~e~~-I~~-------------------lF~~ 990 (1203)
..+||+||||||||++|+++|..+|.+++.++|.. +++.+.+..... +.. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998753 333332221111 111 1122
Q ss_pred HHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc-----cCCccEEEEEecCCC-----CCCcHHHHh
Q 000978 991 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----KDTERILVLAATNRP-----FDLDEAVIR 1060 (1203)
Q Consensus 991 A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~-----~~~~~VlVIaTTN~p-----~~Ld~aLlr 1060 (1203)
|.+ ...+|+||||+.+ ++..+..+..++++-...+.+... ....++.||+|+|.. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 223 3479999999976 222222222222221111111110 012467899999975 367899999
Q ss_pred cccccccCCCCCHHHHHHHHHHHH
Q 000978 1061 RLPRRLMVNLPDAPNRAKILQVIL 1084 (1203)
Q Consensus 1061 RFd~~I~v~~Pd~eeR~eIL~~~l 1084 (1203)
|| ..+.++.|+.++..+|++...
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 678999999999999998865
No 158
>PRK08727 hypothetical protein; Validated
Probab=99.26 E-value=4e-10 Score=124.25 Aligned_cols=145 Identities=23% Similarity=0.321 Sum_probs=96.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1013 (1203)
..++|+||+|||||+|+.++++++ +..++++++.++.. .+..++... ....+|+||||+.+.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 459999999999999999998776 66667776544322 222333333 2457999999998853321
Q ss_pred CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC-CCCCC---cHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhC
Q 000978 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPFDL---DEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKE 1087 (1203)
Q Consensus 1014 ~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN-~p~~L---d~aLlrRF--d~~I~v~~Pd~eeR~eIL~~~l~~~ 1087 (1203)
....+-.+++.+ .. . +..||.|+| .|..+ .+.+++|| ...+.++.|+.+++.+|++.++...
T Consensus 111 --~~~~lf~l~n~~----~~-----~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 --DEVALFDFHNRA----RA-----A-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred --HHHHHHHHHHHH----HH-----c-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 122222333322 11 1 223444444 55544 68999997 4578899999999999999977765
Q ss_pred CCC-CchhHHHHHHHcCC
Q 000978 1088 DLS-PDVDFDAIANMTDG 1104 (1203)
Q Consensus 1088 ~l~-~d~dl~~LA~~T~G 1104 (1203)
++. ++..++.|++.+.|
T Consensus 179 ~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCCHHHHHHHHHhCCC
Confidence 554 45567889988875
No 159
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-10 Score=135.13 Aligned_cols=183 Identities=19% Similarity=0.244 Sum_probs=126.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEE
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINI 967 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~----------fi~I 967 (1203)
.+|++++|++.+.+.+...+.. .+.+.++|||||||+|||++|+++|+.+..+ +..+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 5799999999999999888753 1234689999999999999999999988542 1111
Q ss_pred eccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEE
Q 000978 968 SMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1043 (1203)
Q Consensus 968 ~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~Vl 1043 (1203)
... .........++.+++.+... .+.||+|||+|.+. ...++.|+..++.. ....+
T Consensus 81 ~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~----~~~~~ 140 (367)
T PRK14970 81 ELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEP----PAHAI 140 (367)
T ss_pred Eec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCC----CCceE
Confidence 111 00112234566666665432 34699999999772 12244555555442 23456
Q ss_pred EEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHH
Q 000978 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~ 1115 (1203)
+|.+++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++
T Consensus 141 ~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~le 211 (367)
T PRK14970 141 FILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFD 211 (367)
T ss_pred EEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6666777788899999998 578999999999999999988887764 45667888887766 4444444333
No 160
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.3e-10 Score=140.79 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=130.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|++++|++.+++.|+..+.. .+-++.+||+||+|+|||++|+++|+.+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999988753 123356899999999999999999999832
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 963 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 963 ---------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.++.++.+.- ..-..++.+...+... ...|++|||+|.|- ....+.|+.
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK 139 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLK 139 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHH
Confidence 1233322110 0123444444433221 23599999999882 233455555
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..++|..++.++....++..+..+++. .+..+..|++.+.| +.+
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 55553 345666667777899999999997 689999999999999999999887765 45567888888887 666
Q ss_pred HHHHHHHHHHH
Q 000978 1109 DLKNLCVTAAH 1119 (1203)
Q Consensus 1109 DL~~L~~~Aa~ 1119 (1203)
++.++++.|..
T Consensus 214 ~alnlLdqai~ 224 (535)
T PRK08451 214 DTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHH
Confidence 66676665543
No 161
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.2e-11 Score=144.71 Aligned_cols=191 Identities=24% Similarity=0.304 Sum_probs=141.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE-ec
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI-SM 969 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~f-------i~I-~~ 969 (1203)
.+|+|+.|++.+...|...+.. .+-..++||.||.|+|||++||.+|+.+++.- ..+ .|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 4799999999999999998874 23336799999999999999999999996541 111 01
Q ss_pred ccccc-ccc---------cccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc
Q 000978 970 SSITS-KWF---------GEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1203)
Q Consensus 970 seL~s-~~~---------G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~ 1035 (1203)
-.+.. .++ ...-..++.+.+.+. +..+.|++|||++.|- ...+|.||..++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE-- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE-- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--
Confidence 11100 000 112234555555543 3345799999999872 5567777776665
Q ss_pred ccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCc-hhHHHHHHHcCCCcHHHHHHHH
Q 000978 1036 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKNLC 1114 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d-~dl~~LA~~T~G~Sg~DL~~L~ 1114 (1203)
.+.+|.+|.+|..+..++..+++|+ .++.|...+.++....|..++.++++..+ ..+..||+..+| +.+|...|+
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 4678999999999999999999999 78899999999999999999999988744 457888898888 566766666
Q ss_pred HHHHH
Q 000978 1115 VTAAH 1119 (1203)
Q Consensus 1115 ~~Aa~ 1119 (1203)
..|..
T Consensus 222 Dq~i~ 226 (515)
T COG2812 222 DQAIA 226 (515)
T ss_pred HHHHH
Confidence 66554
No 162
>PRK06620 hypothetical protein; Validated
Probab=99.25 E-value=3.1e-10 Score=123.71 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=96.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
+.++||||||+|||+|++++++..+..++. .... .... .+ ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~----~~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEI----LE-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhH----Hh-cCCEEEEeccccc--------h
Confidence 579999999999999999999988753322 1000 0011 11 3379999999955 1
Q ss_pred hHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC--CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHhhCCCC-C
Q 000978 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD--LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAKEDLS-P 1091 (1203)
Q Consensus 1017 ~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~--Ld~aLlrRFd~--~I~v~~Pd~eeR~eIL~~~l~~~~l~-~ 1091 (1203)
...+-.+++.+. +.++.+||+++..|.. + +++++|+.. ++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 123334444332 2345677777665543 5 889999953 68889999999999999988766554 5
Q ss_pred chhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1092 DVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1092 d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
+..++.|++...+ +.+.+.+++..
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5667888988876 44555555443
No 163
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=3.7e-10 Score=128.65 Aligned_cols=182 Identities=23% Similarity=0.293 Sum_probs=121.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-----~~fi~I~~seL 972 (1203)
.+|+++.|.+.+.+.|..++.. + . ..++||+||||+|||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~--~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K--N--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C--C--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5789999999999999888752 1 1 13699999999999999999999972 34555554332
Q ss_pred ccccccccHHHHHH-HHHHHHh-----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 973 TSKWFGEGEKYVKA-VFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~-lF~~A~k-----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
.. ...+.. +...+.. ..+.+|+|||+|.+.. . ..+.|+..++... ....+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------~----~~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------D----AQQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------H----HHHHHHHHHhcCC----CCCeEEE
Confidence 11 112222 2222222 2346999999998821 1 1223333344322 2345566
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHH
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~A 1117 (1203)
++|.+..+.+.+.+|+. +++|.+++.++...+++.++.+.++. .+..+..|+..+.|... .+.+.++.+
T Consensus 138 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r-~~~~~l~~~ 207 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMR-KAINALQAA 207 (319)
T ss_pred EeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 67777778888999984 68999999999999999999887764 55668889988877444 333333433
No 164
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.7e-10 Score=136.72 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=123.3
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+++.|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 4799999999999999887763 2334569999999999999999999999652
Q ss_pred ------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHH
Q 000978 964 ------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMR 1021 (1203)
Q Consensus 964 ------------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~ 1021 (1203)
++.++.... ..-..++.+.+.+.. ....|+||||+|.|- .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------I 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------H
Confidence 112211110 112344444444422 134699999999882 1
Q ss_pred HHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHH
Q 000978 1022 KMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN 1100 (1203)
Q Consensus 1022 ~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~ 1100 (1203)
...+.|+..++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..++.++....++..+...+.. .+..++.|+.
T Consensus 142 ~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1234455555442 234566666666778888899998 588999999999999999988877653 4556788888
Q ss_pred HcCCCcHHHHHHHHH
Q 000978 1101 MTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1101 ~T~G~Sg~DL~~L~~ 1115 (1203)
.+.|. .+.+.++++
T Consensus 217 ~s~g~-lr~a~~~L~ 230 (397)
T PRK14955 217 KAQGS-MRDAQSILD 230 (397)
T ss_pred HcCCC-HHHHHHHHH
Confidence 88874 334444444
No 165
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.24 E-value=6.5e-11 Score=136.60 Aligned_cols=169 Identities=19% Similarity=0.300 Sum_probs=102.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 968 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-------g~~--fi~I~ 968 (1203)
..|.++.|+++++..|.-.+.. ....++||+|+||+|||++|+++|..+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5689999999999887754431 112579999999999999999999998 332 11111
Q ss_pred cc---------cc---------------cccccccc--HHHH---HHHHHH--HHhcCCceEEEccchhhccCCCCCchh
Q 000978 969 MS---------SI---------------TSKWFGEG--EKYV---KAVFSL--ASKIAPSVIFVDEVDSMLGRRENPGEH 1017 (1203)
Q Consensus 969 ~s---------eL---------------~s~~~G~~--e~~I---~~lF~~--A~k~~PsILfIDEID~L~~~r~~~~~~ 1017 (1203)
+. .+ ....+|.. +..+ ...|.. ..+...++||||||+.+ ++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----~~~~q 145 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----EDHIV 145 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----CHHHH
Confidence 00 00 00122210 0000 000110 00112369999999987 32222
Q ss_pred HHHHHHHHHHH--HhhcCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHHh
Q 000978 1018 EAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVILA 1085 (1203)
Q Consensus 1018 ~al~~il~eLL--~~ldgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~Pd~-eeR~eIL~~~l~ 1085 (1203)
..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++....
T Consensus 146 ~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 22222222111 112333333457899999999754 689999999999999988766 899999988543
No 166
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.1e-10 Score=139.16 Aligned_cols=179 Identities=19% Similarity=0.227 Sum_probs=122.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------E
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----------I 967 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~----------I 967 (1203)
.+|++++|++.+++.|+..+.. .+-+.++||+||+|+|||++|+++|+.+.+.-.. -
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 5799999999999999887753 2233569999999999999999999999662100 0
Q ss_pred ecc--------------ccccccccc---cHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHH
Q 000978 968 SMS--------------SITSKWFGE---GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1026 (1203)
Q Consensus 968 ~~s--------------eL~s~~~G~---~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~e 1026 (1203)
.|. ++ ..+-+. ....++.+.+.+. .....|+||||+|.|- ....+.
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~na 146 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFNA 146 (620)
T ss_pred CCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHHH
Confidence 000 00 001111 1233444444442 2234699999999882 122455
Q ss_pred HHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCC
Q 000978 1027 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1105 (1203)
Q Consensus 1027 LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~ 1105 (1203)
|+..++.. ...+++|.+|+.+..|-+.+++|+ ..+.|..++.++....+...+...+.. ++..++.|+.++.|.
T Consensus 147 LLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gd 221 (620)
T PRK14954 147 FLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGS 221 (620)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 66666553 234566666666788888999998 789999999999999999888877653 556678889998874
Q ss_pred cH
Q 000978 1106 SG 1107 (1203)
Q Consensus 1106 Sg 1107 (1203)
.+
T Consensus 222 lr 223 (620)
T PRK14954 222 MR 223 (620)
T ss_pred HH
Confidence 44
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3e-10 Score=140.63 Aligned_cols=182 Identities=21% Similarity=0.284 Sum_probs=125.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|++.+++.|+..+.. .+....+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 5799999999999999887763 1223568999999999999999999998532
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHH
Q 000978 964 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1203)
Q Consensus 964 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL 1028 (1203)
++.++... ...-..++.+.+.+.. ....||||||+|.|- ...++.|+
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLL 141 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALL 141 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHH
Confidence 12222211 0112234444433322 234699999999882 12345566
Q ss_pred HhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcH
Q 000978 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1029 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg 1107 (1203)
..++.. ...+++|.+++..+.+.+.+++|+ .++.|..++..+...+++.++...++. ++..+..|+..+.| +.
T Consensus 142 k~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 245666666777777888899998 578999999999999999988877654 44557888888887 55
Q ss_pred HHHHHHHHH
Q 000978 1108 SDLKNLCVT 1116 (1203)
Q Consensus 1108 ~DL~~L~~~ 1116 (1203)
+++.++++.
T Consensus 216 r~al~~Lek 224 (585)
T PRK14950 216 RDAENLLQQ 224 (585)
T ss_pred HHHHHHHHH
Confidence 555555443
No 168
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.6e-10 Score=143.26 Aligned_cols=181 Identities=22% Similarity=0.268 Sum_probs=129.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|+++.|++.+++.|...+.. + +-..++||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 5789999999999999988863 1 223579999999999999999999998652
Q ss_pred ------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHH
Q 000978 964 ------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1203)
Q Consensus 964 ------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eL 1027 (1203)
++.++.. ....-..++.+...+... ...||||||+|.|- ....+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naL 141 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNAL 141 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHH
Confidence 2222211 112234567776666432 34699999999882 2345566
Q ss_pred HHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCc
Q 000978 1028 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1028 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~S 1106 (1203)
+..++.. ...+++|++|+.+..+-+.+++|+ ..+.|..++.++....+..++.+.+.. .+..+..|++.+.|..
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l 216 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL 216 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 6666642 356777777778888889999999 678899999998888888888776554 3455788888888754
Q ss_pred HHHHHHHHH
Q 000978 1107 GSDLKNLCV 1115 (1203)
Q Consensus 1107 g~DL~~L~~ 1115 (1203)
+++.++++
T Consensus 217 -r~A~~lLe 224 (620)
T PRK14948 217 -RDAESLLD 224 (620)
T ss_pred -HHHHHHHH
Confidence 34434333
No 169
>PRK05642 DNA replication initiation factor; Validated
Probab=99.21 E-value=3.9e-10 Score=124.41 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=104.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1013 (1203)
+.++|+||+|+|||+|++++++++ +..+++++..++... ...+.+.... ..+|+||||+.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 579999999999999999999875 677888887766532 1122222222 36999999997743321
Q ss_pred CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1014 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1014 ~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
.++.+..+++.+. +.++.+||+++..|. .+.+.+++||. .++.+..|+.+++.++++..+...+
T Consensus 115 --~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 --WEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --HHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1223333343331 224566776665553 33689999994 5677799999999999997666555
Q ss_pred CC-CchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1089 l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
+. ++..++.|++...+ +.+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 43 45567888888876 55555555443
No 170
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=4.8e-10 Score=134.65 Aligned_cols=168 Identities=17% Similarity=0.270 Sum_probs=111.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHH---HHHHHHHHHHhcCCceEEEccchhhc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~---~I~~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
++++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999965 5778888888776554332211 1111 11111 246799999999874
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHH
Q 000978 1009 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVI 1083 (1203)
Q Consensus 1009 ~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~ 1083 (1203)
++. ..++.+..+++.+. + .++.+||++...|. .+++.+.+||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~---~------~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFI---E------NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHH---H------cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 322 12333344444432 1 12334444333443 46789999995 56778899999999999999
Q ss_pred HhhCCC---CCchhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000978 1084 LAKEDL---SPDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1084 l~~~~l---~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
++..++ .++..++.|+..+.| ..+.|..+|..+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 987653 345567888988887 66777777776653
No 171
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=5.4e-10 Score=122.20 Aligned_cols=168 Identities=20% Similarity=0.346 Sum_probs=104.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1011 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1011 (1203)
..++||||+|+|||+|.+|+++++ +..++++++.++...+..........-|....+ ...+|+||+|+.+.++.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch
Confidence 459999999999999999999875 677889988776544322211110111222222 45899999999984321
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC---CCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHhh
Q 000978 1012 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1012 ~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~--~I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
..++.+-.+++.+. ..++.+||++...|. .+++.+.+||.. .+.+..|+.+.|.+|++..+..
T Consensus 114 ---~~q~~lf~l~n~~~---------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 114 ---RTQEELFHLFNRLI---------ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp ---HHHHHHHHHHHHHH---------HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH---------hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 11233334444332 124456666655655 456889999854 7788999999999999999988
Q ss_pred CCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1087 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1087 ~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
.++. ++..++.|++...+ +.++|..++....
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 7776 44556778888764 6667766655443
No 172
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.17 E-value=8.7e-10 Score=137.05 Aligned_cols=230 Identities=19% Similarity=0.257 Sum_probs=133.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 967 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I 967 (1203)
.+|+++.|.+...+.+...+.. .. +.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~-------------~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS-------------PF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc-------------CC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4788999999888877655532 11 2479999999999999999998765 3578999
Q ss_pred eccccc-------cccccccHHH----HHHHHH----------HHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHH
Q 000978 968 SMSSIT-------SKWFGEGEKY----VKAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1026 (1203)
Q Consensus 968 ~~seL~-------s~~~G~~e~~----I~~lF~----------~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~e 1026 (1203)
++..+. ..++|..... .+..+. .......++|||||++.| +...+..+..+++.
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLED 291 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHhh
Confidence 987652 1122221110 000000 011223579999999988 32233333333332
Q ss_pred HHHhh-cC----------------CcccCCccEEEEE-ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1027 FMVNW-DG----------------LRTKDTERILVLA-ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1027 LL~~l-dg----------------l~~~~~~~VlVIa-TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
-...+ .+ +.......+++|+ ||+.+..+++++++||. .+.|++++.+++..|++..+...+
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcC
Confidence 10000 00 0001123455554 55678889999999995 678899999999999999988765
Q ss_pred CC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000978 1089 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1089 l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
+. .+..++.|+..+. .++...+++..+...+..+.. .. . .......|+.+|+++++..-
T Consensus 371 v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~-~---------~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 371 VHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA-G---------KENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred CCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh-c---------cCCCCeeECHHHHHHHhCCC
Confidence 43 3344556666543 233333333333222111110 00 0 00122579999999998854
No 173
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15 E-value=3.3e-10 Score=111.55 Aligned_cols=123 Identities=41% Similarity=0.642 Sum_probs=80.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHH---HHHHHHHHHhcCCceEEEccchhhccC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~---I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
.+++|+||||+|||++++.+++.+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-- 97 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-- 97 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh--
Confidence 579999999999999999999998 89999999877644322211111 1122334445568999999999771
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC--CCcHHHHhcccccccCC
Q 000978 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 1011 r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~~I~v~ 1069 (1203)
.........++..+ .... ....++.+|++++... .+++.+.+||+.++.++
T Consensus 98 ---~~~~~~~~~~i~~~---~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ---RGAQNALLRVLETL---NDLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---HHHHHHHHHHHHhc---Ccee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 11111112222221 1111 1235688889988876 78889999998776664
No 174
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.14 E-value=1.6e-10 Score=109.42 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=80.1
Q ss_pred hhhcccCC--CCcceeeeC-CeEEEcCCCCc-ceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCC
Q 000978 128 CRLLSQSG--QNSNVPICA-SIFTVGSSRQC-NFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNT 203 (1203)
Q Consensus 128 grL~s~~~--~~~~l~i~~-~~~tvGr~~~c-d~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~ 203 (1203)
+.|.++.. ..+.+.|.. ..|+|||+..| |+.|.+..+|..||.|..... ....++++.|.|||+|||+++.++.
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~--~~~~~~~~~s~~g~~vn~~~~~~~~ 79 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD--GGVVLIDLGSTNGTFVNGQRVSPGE 79 (102)
T ss_pred eEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCC--CCEEEEECCCCCCeEECCEECCCCC
Confidence 44555544 577888998 99999999999 999999999999999997643 2356888888899999999999999
Q ss_pred eeEccCCCEEEEeecCCeEEEEE
Q 000978 204 SCELRSGDEVVFGSLGNHAYIFQ 226 (1203)
Q Consensus 204 ~~~L~~gDeI~f~~~~~~~yif~ 226 (1203)
.+.|.+||.|.|+. +.+.|.|+
T Consensus 80 ~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 80 PVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred cEECCCCCEEEECC-eEEEEEEe
Confidence 99999999999987 44455554
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.5e-09 Score=134.57 Aligned_cols=180 Identities=20% Similarity=0.279 Sum_probs=128.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|+++.|++.+++.|...+.. .+.+..+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 5799999999999999988763 223356999999999999999999998853
Q ss_pred ----------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHH
Q 000978 963 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1203)
Q Consensus 963 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL 1028 (1203)
+++.+++... .....++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHH
Confidence 3333433211 1123455555555433 24599999999882 12345566
Q ss_pred HhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-chhHHHHHHHcCCCcH
Q 000978 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1029 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~-d~dl~~LA~~T~G~Sg 1107 (1203)
..++.. ...+++|.+|+.+..|-+.+++|+ .++.|..++.++...+++.++.++++.. +..+..|+..+.|..
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl- 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM- 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-
Confidence 666553 345666667777788999999998 6799999999999999999988887763 345788888887744
Q ss_pred HHHHHHH
Q 000978 1108 SDLKNLC 1114 (1203)
Q Consensus 1108 ~DL~~L~ 1114 (1203)
+++.+++
T Consensus 217 r~al~~L 223 (614)
T PRK14971 217 RDALSIF 223 (614)
T ss_pred HHHHHHH
Confidence 3443433
No 176
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=8.7e-10 Score=127.61 Aligned_cols=241 Identities=17% Similarity=0.264 Sum_probs=132.4
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 965 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-------g~~fi------ 965 (1203)
-|..|+|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3778999999998876554421 13579999999999999999999877 22221
Q ss_pred -------EE--e-------------cccc-----ccccccccH--HHH--------HHHHHHHHhcCCceEEEccchhhc
Q 000978 966 -------NI--S-------------MSSI-----TSKWFGEGE--KYV--------KAVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 966 -------~I--~-------------~seL-----~s~~~G~~e--~~I--------~~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
+. . ..++ ....+|... ..+ ..++. +...++||||||+.+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhC-
Confidence 00 0 0011 012222210 000 01111 123479999999987
Q ss_pred cCCCCCchhHHHHHHHHHHH--HhhcCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHH
Q 000978 1009 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVIL 1084 (1203)
Q Consensus 1009 ~~r~~~~~~~al~~il~eLL--~~ldgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~Pd~-eeR~eIL~~~l 1084 (1203)
++..+..+..++.+-. ...+|.......++++|+|.|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 2222222222221100 011232223346899999998655 799999999999999988875 88999998754
Q ss_pred hhCC--CC--------CchhHHHHH---HHcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000978 1085 AKED--LS--------PDVDFDAIA---NMTDG--YSGSD---LKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPAL 1146 (1203)
Q Consensus 1085 ~~~~--l~--------~d~dl~~LA---~~T~G--~Sg~D---L~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~ 1146 (1203)
.... .. .......|. +.... .+... |..+|........|..+...+.+++.|..+|+
T Consensus 220 ~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR----- 294 (337)
T TIGR02030 220 EYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGR----- 294 (337)
T ss_pred hcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCC-----
Confidence 3210 00 000111111 11121 11222 22222222211224444444445555655554
Q ss_pred CCCCCCccccHHHHHHHHHHhccccc
Q 000978 1147 SGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1147 ~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
..|+.+|+..+..-+.+...
T Consensus 295 ------~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 295 ------TEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred ------CCCCHHHHHHHHHHHHHHhC
Confidence 47999999999988765543
No 177
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.11 E-value=2.7e-10 Score=130.27 Aligned_cols=142 Identities=16% Similarity=0.218 Sum_probs=97.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccccHH----------HHHHHHHHHHhcCCceEEEccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGEK----------YVKAVFSLASKIAPSVIFVDEV 1004 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~--~~G~~e~----------~I~~lF~~A~k~~PsILfIDEI 1004 (1203)
++|||.||||||||++|+++|..++.+++++++...+.. ++|.... .....+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999988654332 4443211 11223344444 4578999999
Q ss_pred hhhccCCCCCchhHHHHHHHHH-HHHhhcC-Cc-ccCCccEEEEEecCCCC------------CCcHHHHhcccccccCC
Q 000978 1005 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG-LR-TKDTERILVLAATNRPF------------DLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~e-LL~~ldg-l~-~~~~~~VlVIaTTN~p~------------~Ld~aLlrRFd~~I~v~ 1069 (1203)
|.. .+.....+..+++. -...+.+ .. ......+.||||+|... .++++++.||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 966 33333344444331 0001111 11 11234789999999853 57899999997788999
Q ss_pred CCCHHHHHHHHHHHH
Q 000978 1070 LPDAPNRAKILQVIL 1084 (1203)
Q Consensus 1070 ~Pd~eeR~eIL~~~l 1084 (1203)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999998764
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.11 E-value=4e-09 Score=123.75 Aligned_cols=167 Identities=19% Similarity=0.339 Sum_probs=114.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
.+.++||||.|.|||+|++|++++. +..++++....++..++......-..-|..-+ .-.+++||||+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3569999999999999999999887 34577777766655544443333333455555 5579999999998655
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC---CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000978 1011 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1011 r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--~I~v~~Pd~eeR~eIL~~~l~ 1085 (1203)
... ++..-.+++.+. ..++-+|+.+-..|.. +.+.+++||.. ++.+.+|+.+.|..||+....
T Consensus 191 ~~~---qeefFh~FN~l~---------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ERT---QEEFFHTFNALL---------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hhH---HHHHHHHHHHHH---------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 422 444445555542 1234566655555654 55899999965 677889999999999999887
Q ss_pred hCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHH
Q 000978 1086 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1086 ~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~A 1117 (1203)
..++. ++..+..||..... +.++|..++...
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l 290 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRL 290 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 77765 45556778877654 455655544433
No 179
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.11 E-value=5.8e-10 Score=139.25 Aligned_cols=233 Identities=21% Similarity=0.294 Sum_probs=137.7
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 960 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL------------------ 960 (1203)
-|.+|+|++.++..|.-.+..+ ...+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 3678999999998876555421 12579999999999999999999988
Q ss_pred -----------------CCcEEEEecccccccccccc--HHHHH--------HHHHHHHhcCCceEEEccchhhccCCCC
Q 000978 961 -----------------GANFINISMSSITSKWFGEG--EKYVK--------AVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1203)
Q Consensus 961 -----------------g~~fi~I~~seL~s~~~G~~--e~~I~--------~lF~~A~k~~PsILfIDEID~L~~~r~~ 1013 (1203)
..+|+.+.+......++|.. +..+. .++..| ..+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766554433444432 11110 011111 2369999999988 2
Q ss_pred CchhHHHHHHHHHHHHhhc---------CCcccCCccEEEEEecCCC-CCCcHHHHhcccccccCCCC-CHHHHHHHHHH
Q 000978 1014 PGEHEAMRKMKNEFMVNWD---------GLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQV 1082 (1203)
Q Consensus 1014 ~~~~~al~~il~eLL~~ld---------gl~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~~I~v~~P-d~eeR~eIL~~ 1082 (1203)
. .+.+.|+..++ +.......+++||+|+|.. ..|.++++.||+..|.++.+ +.+++.++++.
T Consensus 140 ~-------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 140 D-------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred H-------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 2 22333333332 2222334679999999964 46889999999988888766 46788888876
Q ss_pred HHhhCCCC--------Cc--hhHHHHH--H-HcC--CCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCC
Q 000978 1083 ILAKEDLS--------PD--VDFDAIA--N-MTD--GYSGSDLKNLCVTAAHR---PIKEILEKEKKERAAAMAEGKPAP 1144 (1203)
Q Consensus 1083 ~l~~~~l~--------~d--~dl~~LA--~-~T~--G~Sg~DL~~L~~~Aa~~---airel~~~~~~~~~~a~~e~~~~~ 1144 (1203)
.+....-. .+ .....+. + +.. -.+...+..|+..+... ..|..+...+-+++.+..+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr--- 289 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGR--- 289 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC---
Confidence 55321100 00 0001111 1 111 12333333444333221 233333444445555544443
Q ss_pred CCCCCCCCccccHHHHHHHHHHhcccc
Q 000978 1145 ALSGCADIRPLNMDDFKYAHERVCASV 1171 (1203)
Q Consensus 1145 ~~~~~~~~r~Lt~eDf~~Al~~v~pS~ 1171 (1203)
..|+.+|+.+|+..+.+..
T Consensus 290 --------~~V~~~Dv~~A~~lvL~hR 308 (633)
T TIGR02442 290 --------RRVTAEDVREAAELVLPHR 308 (633)
T ss_pred --------CcCCHHHHHHHHHHHhhhh
Confidence 5799999999999886544
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.09 E-value=9.4e-10 Score=117.99 Aligned_cols=186 Identities=24% Similarity=0.322 Sum_probs=127.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C----CcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-g----~~fi~I~~seL 972 (1203)
..+.||+|.++..+.|.-+... + +.| +++|.||||+|||+-+.++|+++ | --+..++.++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~----------g--nmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE----------G--NMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc----------C--CCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4578999999999988766542 1 333 89999999999999999999998 3 23566776653
Q ss_pred ccccccccHHHHHHHHHHHHhcCC---ceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAP---SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~P---sILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
.+ +.-....++.+-..--..+| .||++||+|++ ..+.+++++++++-.- ....+..++|
T Consensus 90 RG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFalaCN 151 (333)
T KOG0991|consen 90 RG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALACN 151 (333)
T ss_pred cc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhhhc
Confidence 22 11112222222221112233 59999999999 5677888888877541 2345566788
Q ss_pred CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1050 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1050 ~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
....+-+.+.+|+ ..+.+...+..+...-+....+.+++. .+..++.+.-..+|.....|.+|-..
T Consensus 152 ~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 152 QSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST 218 (333)
T ss_pred chhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHH
Confidence 8888889999998 567777777776666666666666655 34557777777778777777766443
No 181
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6e-09 Score=121.99 Aligned_cols=221 Identities=20% Similarity=0.284 Sum_probs=138.5
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEeccccccc-
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSK- 975 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~-----~fi~I~~seL~s~- 975 (1203)
.+.+-+...+++...+...+. + ..| .+++++|+||||||.+++.+++++.- .+++++|..+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 367777777777776543221 1 234 46999999999999999999999833 3899999664221
Q ss_pred --------------ccccc-HHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCC
Q 000978 976 --------------WFGEG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1039 (1203)
Q Consensus 976 --------------~~G~~-e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~ 1039 (1203)
..|.+ ......+++...+ ...-||+|||+|.|..+.. .++-.|+...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~----~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN----K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc----c
Confidence 11111 2233334443333 3456888999999975432 3444443332222 5
Q ss_pred ccEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCchhHHHHHH---HcCCCcHHH
Q 000978 1040 ERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIAN---MTDGYSGSD 1109 (1203)
Q Consensus 1040 ~~VlVIaTTN~p---~~Ld~aLlrRFd-~~I~v~~Pd~eeR~eIL~~~l~~~---~l~~d~dl~~LA~---~T~G~Sg~D 1109 (1203)
.++.+|+.+|.. +.+++.+.++|. ..|.|++++.+|...|++...... +...+.-++.+|. ...| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 778999999976 478889998774 468999999999999999987642 1122333444443 3333 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1110 LKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1110 L~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
-..+|+.|+..|.++ ....++.+|+.+|.+.+...+.
T Consensus 234 aidilr~A~eiAe~~--------------------------~~~~v~~~~v~~a~~~~~~~~~ 270 (366)
T COG1474 234 AIDILRRAGEIAERE--------------------------GSRKVSEDHVREAQEEIERDVL 270 (366)
T ss_pred HHHHHHHHHHHHHhh--------------------------CCCCcCHHHHHHHHHHhhHHHH
Confidence 335667777655443 2245677777777555544443
No 182
>PHA02244 ATPase-like protein
Probab=99.07 E-value=1.5e-09 Score=125.53 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=83.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc---ccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG---EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1013 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G---~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1013 (1203)
.+|||+||||||||+||+++|..++.+|+.++.-.-.....| ........-|..|.+ ...+||||||+.+ .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 359999999999999999999999999999874210001111 111111122333333 4589999999976 2
Q ss_pred CchhHHHHHHHHHH-HHhhcCCcccCCccEEEEEecCCC-----------CCCcHHHHhcccccccCCCCCHHHHHHHH
Q 000978 1014 PGEHEAMRKMKNEF-MVNWDGLRTKDTERILVLAATNRP-----------FDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1203)
Q Consensus 1014 ~~~~~al~~il~eL-L~~ldgl~~~~~~~VlVIaTTN~p-----------~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL 1080 (1203)
+.....+..++... +..+.+ ......++.+|+|+|.+ ..|++++++|| ..|+++.|+. ....|.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~-~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADE-RVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK-IEHLIS 269 (383)
T ss_pred HHHHHHHHHHhccCeEEecCc-EEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH-HHHHHh
Confidence 22222333333211 111111 11234678999999973 57899999999 5789999883 333444
No 183
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.06 E-value=4.3e-10 Score=118.49 Aligned_cols=115 Identities=27% Similarity=0.363 Sum_probs=76.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccccccccccHHHHHHHHHHH----HhcCCceEEEccch
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVD 1005 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~----~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID 1005 (1203)
+|...+||.||+|+|||.||+++|..+.. +++.++|+++... +..+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 46678999999999999999999999996 9999999988651 11111222222111 11122599999999
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHhhcCCccc-------CCccEEEEEecCCC
Q 000978 1006 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP 1051 (1203)
Q Consensus 1006 ~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p 1051 (1203)
+.... ........-..+.+.||..+++.... +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99654 22233334446777788877654322 23689999999963
No 184
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.05 E-value=9.9e-09 Score=111.13 Aligned_cols=190 Identities=21% Similarity=0.291 Sum_probs=135.5
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~ 973 (1203)
.+.+.+|.|++.+++.|.+-... |.+ ..|.++|||+|..||||++|+||+.++. +..+|.|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 37899999999999998775543 333 3577899999999999999999999888 6778888876653
Q ss_pred cccccccHHHHHHHHHHHHhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
. +-.+++..+.. ..-|||+|++- + .. ..... ..|-..++|.....+.+|+|.||+|+..
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e~-gd~~y----K~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS-F-----EE-GDDAY----KALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC-C-----CC-CchHH----HHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3 34455555443 34699999974 1 11 11222 2334456777666789999999999865
Q ss_pred CCcH----------------------HHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCC-chhH----HHHHHHcCCC
Q 000978 1053 DLDE----------------------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDF----DAIANMTDGY 1105 (1203)
Q Consensus 1053 ~Ld~----------------------aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~-d~dl----~~LA~~T~G~ 1105 (1203)
.|++ .+-.||+..+.|.+++.++-..|+..++++.++.- +..+ -+.|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4431 12339999999999999999999999999888764 2222 2345666677
Q ss_pred cHHHHHHHHHH
Q 000978 1106 SGSDLKNLCVT 1116 (1203)
Q Consensus 1106 Sg~DL~~L~~~ 1116 (1203)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 88655555443
No 185
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=6.2e-09 Score=121.35 Aligned_cols=189 Identities=18% Similarity=0.153 Sum_probs=122.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE---
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI--- 967 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~-------~fi~I--- 967 (1203)
..++++.|++.+.+.|...+.. .+-+..+||+||+|+|||++|+++|+.+.+ +....
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4688999999999999988763 233357999999999999999999999844 11100
Q ss_pred -ec-----------cccc--cccccc---------cHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHH
Q 000978 968 -SM-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAM 1020 (1203)
Q Consensus 968 -~~-----------seL~--s~~~G~---------~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al 1020 (1203)
.| +++. ....+. .-..++.+..... .....||+|||+|.| +
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------- 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------- 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C-------
Confidence 11 0110 000000 0122333333222 234579999999988 2
Q ss_pred HHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 000978 1021 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIAN 1100 (1203)
Q Consensus 1021 ~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~ 1100 (1203)
....+.|+..++.. +.++++|..|+.+..+.+.+++|+ ..+.|++|+.++..++++....... .++..+..+++
T Consensus 155 ~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 23345566666553 345566666777888889999999 7999999999999999988543322 22444677888
Q ss_pred HcCCCcHHHHHHHHHHHH
Q 000978 1101 MTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1101 ~T~G~Sg~DL~~L~~~Aa 1118 (1203)
.+.|.....+ ++.....
T Consensus 229 ~s~G~pr~Al-~ll~~~~ 245 (351)
T PRK09112 229 RSKGSVRKAL-LLLNYGG 245 (351)
T ss_pred HcCCCHHHHH-HHHhcCc
Confidence 8887555444 4444333
No 186
>PRK09087 hypothetical protein; Validated
Probab=99.04 E-value=5e-09 Score=115.21 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=110.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
+.++|+||+|+|||+|++++++..+..++.. ..+.. .++..... .+|+|||++.+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876553332 22111 11111111 589999999662 12
Q ss_pred hHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-
Q 000978 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS- 1090 (1203)
Q Consensus 1017 ~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~l~- 1090 (1203)
+..+..+++.+. +.++.+||+++..|.. ..+.+++||. .++.+..|+.+.|.+|++..+...++.
T Consensus 103 ~~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 344444444442 1244566666655532 3578999985 678899999999999999999887664
Q ss_pred CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000978 1091 PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1091 ~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
++..++.|++...+ +.+.+..++......+. ...+++|...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~---------------------------~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLAL---------------------------ERKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH---------------------------HhCCCCCHHHHHHHHHhh
Confidence 55667888888774 23333332222211110 023679999999999875
No 187
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.1e-08 Score=117.65 Aligned_cols=173 Identities=17% Similarity=0.288 Sum_probs=116.3
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecc
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISMS 970 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------~fi~I~~s 970 (1203)
+|+++.|++.+++.|...+.. .+-++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 688999999999999888753 233357899999999999999999998732 22233221
Q ss_pred ccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 971 SITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 971 eL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
.+..+ .-..++.+.+.+.. ....|++||++|.| + ....+.|+..++.. +..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----~-------~~a~naLLK~LEep----p~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----T-------EQAQNAFLKTIEEP----PKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----C-------HHHHHHHHHHhcCC----CCCeEEEE
Confidence 01111 12235555443332 24569999999988 2 22345566666653 34566666
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHH
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~ 1108 (1203)
+|+.++.+-+.+++|+ ..+.|..|+.++...++...+. . ..+..+..++..+.|-.+.
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--D-IKEEEKKSAIAFSDGIPGK 186 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--C-CCHHHHHHHHHHcCCCHHH
Confidence 6677899999999999 6899999999998887766542 2 2234456677777764443
No 188
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.01 E-value=3.1e-09 Score=129.80 Aligned_cols=175 Identities=23% Similarity=0.288 Sum_probs=102.8
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEE---Eeccccccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FIN---ISMSSITSKWF 977 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-fi~---I~~seL~s~~~ 977 (1203)
.|.|++.+|..+.-.+...... ....+...+...+|||+|+||+|||++|+++++.+... |+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~--~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK--NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc--ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5789999988877666542111 00111112233479999999999999999999987433 222 12222211111
Q ss_pred ccc---HHHH-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh--cCCcccCCccEEEEEecCCC
Q 000978 978 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 978 G~~---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p 1051 (1203)
... +..+ ...+..| ..++++|||++.+ ....+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 110 0000 0011122 3479999999988 3223333333222111111 23333345789999999975
Q ss_pred C-------------CCcHHHHhccccccc-CCCCCHHHHHHHHHHHHhh
Q 000978 1052 F-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
+ .|++++++|||..+. .+.|+.+...+|+++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 2 699999999987655 4789999999999987653
No 189
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.5e-09 Score=115.17 Aligned_cols=97 Identities=27% Similarity=0.518 Sum_probs=70.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc-HHHHHHHHHHH----HhcCCceEEEccchhhccC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~ 1010 (1203)
.+|||.||+|||||.||+.+|+.++.||...++..|.. .|+|+. |..+-.++..| .+...+||||||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 47999999999999999999999999999999988854 578876 44445555433 3445699999999999877
Q ss_pred CCCCchh-HH-HHHHHHHHHHhhcC
Q 000978 1011 RENPGEH-EA-MRKMKNEFMVNWDG 1033 (1203)
Q Consensus 1011 r~~~~~~-~a-l~~il~eLL~~ldg 1033 (1203)
..++... .. -.-+.+.||..++|
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 6554211 11 12345556666654
No 190
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=9.6e-09 Score=120.38 Aligned_cols=180 Identities=21% Similarity=0.191 Sum_probs=118.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------EE
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------IN 966 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~f-----------i~ 966 (1203)
.++++|.|++.+++.|.+.+.. .+-+..+||+||+|+||+++|.++|+.+-+.- ..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 4788999999999999988763 23346799999999999999999999882210 00
Q ss_pred E----ec-----------cccc--cc---ccc------ccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCch
Q 000978 967 I----SM-----------SSIT--SK---WFG------EGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 967 I----~~-----------seL~--s~---~~G------~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
+ .| +++. .. --+ -.-..++.+...+. ...+.||+|||+|.+ +
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~--- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N--- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C---
Confidence 0 00 1110 00 000 01123444444332 335779999999988 2
Q ss_pred hHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHH
Q 000978 1017 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 1096 (1203)
Q Consensus 1017 ~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~ 1096 (1203)
....+.|+..++.. +.+.++|.+|+.++.+.+.+++|+ ..+.|++|+.++..+++..... ...+..+.
T Consensus 155 ----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~---~~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGP---DLPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhcc---cCCHHHHH
Confidence 23445566666543 345677778888888999999999 7899999999999988877531 12233346
Q ss_pred HHHHHcCCCcHHHH
Q 000978 1097 AIANMTDGYSGSDL 1110 (1203)
Q Consensus 1097 ~LA~~T~G~Sg~DL 1110 (1203)
.++..+.|-.+..+
T Consensus 223 ~l~~~s~Gsp~~Al 236 (365)
T PRK07471 223 ALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHcCCCHHHHH
Confidence 77788877555443
No 191
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.99 E-value=5.4e-09 Score=121.41 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=109.7
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec-------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------- 969 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-~~fi~I~~------- 969 (1203)
+.|..+.|++.++..|.-... .....++||.|+.|+|||+++|+||..|. ..++. .|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 457788999999887654322 33457899999999999999999999882 22111 11
Q ss_pred -c------------------------ccccccccccHH----------HHHH---HHH---HHHhcCCceEEEccchhhc
Q 000978 970 -S------------------------SITSKWFGEGEK----------YVKA---VFS---LASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 970 -s------------------------eL~s~~~G~~e~----------~I~~---lF~---~A~k~~PsILfIDEID~L~ 1008 (1203)
+ .++..-.|.++. .+.. .|. .|+. ..+||||||+..|
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL- 156 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL- 156 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc-
Confidence 0 011222233333 1110 111 1111 2379999999987
Q ss_pred cCCCCCchhHHHHHHHHH--HHHhhcCCcccCCccEEEEEecCCC-CCCcHHHHhcccccccCCCC-CHHHHHHHHHHHH
Q 000978 1009 GRRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVIL 1084 (1203)
Q Consensus 1009 ~~r~~~~~~~al~~il~e--LL~~ldgl~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~~I~v~~P-d~eeR~eIL~~~l 1084 (1203)
.......+..++.+ -....+|+...-+.++++|+|+|.- ..|-+.|+.||+..+.+..| +.++|.+|++..+
T Consensus 157 ----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 157 ----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred ----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 32233333333333 1334566666667899999999976 58999999999999998665 6899999999887
Q ss_pred hh
Q 000978 1085 AK 1086 (1203)
Q Consensus 1085 ~~ 1086 (1203)
..
T Consensus 233 ~f 234 (423)
T COG1239 233 AF 234 (423)
T ss_pred Hh
Confidence 65
No 192
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.9e-09 Score=119.50 Aligned_cols=73 Identities=32% Similarity=0.586 Sum_probs=61.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc-HHHHHHHHHHH----HhcCCceEEEccchhhcc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~ 1009 (1203)
.+|||.||+|+|||.||+.||+-++.||...+|..|.. .|+|+. |..+..++..| .+.+.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 37999999999999999999999999999999998854 578876 55667777665 345679999999999973
No 193
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.4e-09 Score=121.45 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=146.1
Q ss_pred cccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 000978 382 GILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1203)
Q Consensus 382 ~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1203)
.++|+.+.+=-||+-=|= -+.|+-|++-|..-|+-.++ +-..+|-+-+|=|||.|||| .+++.|.||||+++-.+
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 456666666668885443 67899999988888887666 44678999999999999999 89999999999998776
Q ss_pred EEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 000978 462 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 541 (1203)
Q Consensus 462 ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1203)
..+=|.
T Consensus 205 -----~~~~y~--------------------------------------------------------------------- 210 (423)
T KOG0744|consen 205 -----TNDRYY--------------------------------------------------------------------- 210 (423)
T ss_pred -----ecCccc---------------------------------------------------------------------
Confidence 211111
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccc
Q 000978 542 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 621 (1203)
Q Consensus 542 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 621 (1203)
+|- ..|.|. |
T Consensus 211 -----------~~~--------------------------------liEins-------------------------h-- 220 (423)
T KOG0744|consen 211 -----------KGQ--------------------------------LIEINS-------------------------H-- 220 (423)
T ss_pred -----------cce--------------------------------EEEEeh-------------------------h--
Confidence 000 123333 1
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeE--EEEcchhhhhc------------CCcchhhhHHHHHhcC
Q 000978 622 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFI--LFMKDAEKSIA------------GNSDSYSTFKSRLEKL 687 (1203)
Q Consensus 622 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~I--lfiddi~~~l~------------~~~~~~~~lk~~L~~l 687 (1203)
--+|||-+| .-.++..+|+-+.+..+..... |.|||+|.+.. ...+..|.|-..|+++
T Consensus 221 ------sLFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl 292 (423)
T KOG0744|consen 221 ------SLFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL 292 (423)
T ss_pred ------HHHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Confidence 135889888 7788999998888877765544 46999998763 2234555666666666
Q ss_pred C--CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 000978 688 P--DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 765 (1203)
Q Consensus 688 ~--g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~ 765 (1203)
. .||+|++.-|..+. +|.|+--|-+-+++|+.|..
T Consensus 293 K~~~NvliL~TSNl~~s-------------------------------------------iD~AfVDRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 293 KRYPNVLILATSNLTDS-------------------------------------------IDVAFVDRADIVFYVGPPTA 329 (423)
T ss_pred ccCCCEEEEeccchHHH-------------------------------------------HHHHhhhHhhheeecCCccH
Confidence 4 59999999998875 34444445778999999999
Q ss_pred HHHHHHHHHhhhhhhhh
Q 000978 766 EALLASWKHQLDRDSET 782 (1203)
Q Consensus 766 E~Rl~Ilk~~Le~~~e~ 782 (1203)
+++.+|+|.-+++++..
T Consensus 330 ~ai~~IlkscieEL~~~ 346 (423)
T KOG0744|consen 330 EAIYEILKSCIEELISS 346 (423)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999877776654
No 194
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.96 E-value=1.1e-08 Score=108.80 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 990 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg~~------------------------fi~I~~seL~s~~~G~~e~~I~~lF~~ 990 (1203)
.+..+||+||+|+|||++|+++++.+... +..+.... . ......++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34679999999999999999999998432 22222110 0 0122445555555
Q ss_pred HHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccc
Q 000978 991 ASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRL 1066 (1203)
Q Consensus 991 A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I 1066 (1203)
+.. ....||+|||+|.|- ....+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 544 245699999999882 12345566666553 245666667777789999999999 589
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCC
Q 000978 1067 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGY 1105 (1203)
Q Consensus 1067 ~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~ 1105 (1203)
.|.+|+.++..++++.. ++ .+..+..|+..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999998888775 33 345577777777764
No 195
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=4.5e-08 Score=109.15 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=116.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEE--Eecccc--------ccccccc-----c-HHHHHHHH----HHHHhcC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG-ANFIN--ISMSSI--------TSKWFGE-----G-EKYVKAVF----SLASKIA 995 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg-~~fi~--I~~seL--------~s~~~G~-----~-e~~I~~lF----~~A~k~~ 995 (1203)
.-++|+||+|+|||++++.+++.+. ..++. +....+ +....|. . ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4589999999999999999999985 22222 111111 0011111 1 11112222 2233456
Q ss_pred CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC--CCCC----cHHHHhcccccccCC
Q 000978 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR--PFDL----DEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 996 PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~--p~~L----d~aLlrRFd~~I~v~ 1069 (1203)
+.||+|||++.+. ... ...+..+. .........+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~--------~~~-~~~l~~l~----~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PEL-LEELRMLS----NFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHH-HHHHHHHh----CcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 6899999999772 111 11222221 111111223333333322 1111 124666887889999
Q ss_pred CCCHHHHHHHHHHHHhhCCC-----CCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000978 1070 LPDAPNRAKILQVILAKEDL-----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAP 1144 (1203)
Q Consensus 1070 ~Pd~eeR~eIL~~~l~~~~l-----~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~ 1144 (1203)
+.+.++..+++...+...+. ..+..++.|++.+.|+.. .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 99999999999988865432 245668889999999754 5999999888766542
Q ss_pred CCCCCCCCccccHHHHHHHHHHhc
Q 000978 1145 ALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1145 ~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
....|+.+++++++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 225699999999999875
No 196
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.94 E-value=2.3e-09 Score=123.97 Aligned_cols=138 Identities=29% Similarity=0.464 Sum_probs=94.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccccccHHHHH------------HHHHHHHhcCCceEEEc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEGEKYVK------------AVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~--s~~~G~~e~~I~------------~lF~~A~k~~PsILfID 1002 (1203)
+++||.||||+|||+||+++|..++.+|+++.|..-+ +..+|...-... -+|.... +|+++|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 4799999999999999999999999999999986432 122222211111 0111111 499999
Q ss_pred cchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-ccCCccEEEEEecC-----CCCCCcHHHHhcccccccCCCCC-HHH
Q 000978 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDTERILVLAATN-----RPFDLDEAVIRRLPRRLMVNLPD-APN 1075 (1203)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-~~~~~~VlVIaTTN-----~p~~Ld~aLlrRFd~~I~v~~Pd-~ee 1075 (1203)
||++. ++..+.++..++++.-..+.+.. ..-+..++||+|+| ....|++++++||...++++.|+ .++
T Consensus 120 EInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 120 EINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred ccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHH
Confidence 99855 44455555555555444455554 44457899999999 44678999999998899999994 444
Q ss_pred HHHHHHHH
Q 000978 1076 RAKILQVI 1083 (1203)
Q Consensus 1076 R~eIL~~~ 1083 (1203)
...++...
T Consensus 195 ~~~i~~~~ 202 (329)
T COG0714 195 ERIILARV 202 (329)
T ss_pred HHHHHHhC
Confidence 44444443
No 197
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.93 E-value=1.6e-08 Score=125.45 Aligned_cols=220 Identities=20% Similarity=0.259 Sum_probs=127.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccccH--HHHH-H--HHH--HHHhcCCceEEEccchh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-A--VFS--LASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL~s~~~G~~e--~~I~-~--lF~--~A~k~~PsILfIDEID~ 1006 (1203)
..+|||.|+||||||++|++++..+. .+|+.+.........+|... ..+. . .|. ...+...++||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 56899999999999999999999885 46888876433334444421 0000 0 000 00112236999999998
Q ss_pred hccCCCCCchhHHHHHHHHHHHHhh--cCCcccCCccEEEEEecCCCC---CCcHHHHhcccccccCC-CCCHHHHHHHH
Q 000978 1007 MLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF---DLDEAVIRRLPRRLMVN-LPDAPNRAKIL 1080 (1203)
Q Consensus 1007 L~~~r~~~~~~~al~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~~I~v~-~Pd~eeR~eIL 1080 (1203)
+ ++..+..+..++++-...+ ++.....+.++.||+|+|..+ .|.++++.||...+.+. .|+.++|.+|+
T Consensus 96 l-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil 170 (589)
T TIGR02031 96 L-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIV 170 (589)
T ss_pred C-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHH
Confidence 8 3222222222222111011 132223346789999999865 79999999999876664 56788899999
Q ss_pred HHHHhhCC----CCCchhHHHHHH---HcC--CCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 000978 1081 QVILAKED----LSPDVDFDAIAN---MTD--GYSGSDLKNLCVTAAHRP---IKEILEKEKKERAAAMAEGKPAPALSG 1148 (1203)
Q Consensus 1081 ~~~l~~~~----l~~d~dl~~LA~---~T~--G~Sg~DL~~L~~~Aa~~a---irel~~~~~~~~~~a~~e~~~~~~~~~ 1148 (1203)
+..+.... .........|.. ... -.+...+..|+..+.... .|..+...+-+++.+..+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr------- 243 (589)
T TIGR02031 171 RRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGR------- 243 (589)
T ss_pred HHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCC-------
Confidence 88763221 111122222221 122 233444555555554322 23333334445555554443
Q ss_pred CCCCccccHHHHHHHHHHhcccc
Q 000978 1149 CADIRPLNMDDFKYAHERVCASV 1171 (1203)
Q Consensus 1149 ~~~~r~Lt~eDf~~Al~~v~pS~ 1171 (1203)
..|+.+|+..|+.-|.+.-
T Consensus 244 ----~~V~~~Dv~~a~~lvl~hR 262 (589)
T TIGR02031 244 ----TEVTEEDLKLAVELVLLPR 262 (589)
T ss_pred ----CCCCHHHHHHHHHHHhhhh
Confidence 5799999999999876443
No 198
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.93 E-value=5e-08 Score=110.55 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=64.5
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
|+-++..++.|+ .+|...+++.++.++|++..+..+++. .+..++.|+.....-|-+--.+|+.-|...|-++
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r----- 415 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR----- 415 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-----
Confidence 678899999998 788889999999999999998887765 4555777777665444444444444333333221
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
....+..+|+++|.+-+.
T Consensus 416 ---------------------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 ---------------------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred ---------------------CCCeeehhHHHHHHHHHh
Confidence 224688899999988763
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.92 E-value=6.1e-10 Score=112.21 Aligned_cols=112 Identities=26% Similarity=0.430 Sum_probs=69.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc--ccccccHH------HHHHHHHHHHhcCCceEEEccchhhcc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEK------YVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s--~~~G~~e~------~I~~lF~~A~k~~PsILfIDEID~L~~ 1009 (1203)
+|||+||||+|||+||+.+|+.++.+++.+.+..... .++|...- .....+..+.+ .+.|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999998865311 11111100 00000011111 4689999999965
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcCCccc---------CCc------cEEEEEecCCCC----CCcHHHHhcc
Q 000978 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DTE------RILVLAATNRPF----DLDEAVIRRL 1062 (1203)
Q Consensus 1010 ~r~~~~~~~al~~il~eLL~~ldgl~~~---------~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1062 (1203)
. ..++..|+..++.-... ... ++.+|+|+|... .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 34444444444432111 011 389999999988 9999999998
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=5.9e-09 Score=101.35 Aligned_cols=127 Identities=33% Similarity=0.463 Sum_probs=81.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------cccccHHHHHHHHHHHHhcCCceE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVI 999 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~---fi~I~~seL~s~--------------~~G~~e~~I~~lF~~A~k~~PsIL 999 (1203)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999664 888887654321 122345567788888988888999
Q ss_pred EEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC-CCCCcHHHHhcccccccCCCC
Q 000978 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-PFDLDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-p~~Ld~aLlrRFd~~I~v~~P 1071 (1203)
+|||++.+.... ................ .....+..+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884221 1111000000000000 012355788888886 444555566688777766543
No 201
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.7e-09 Score=128.26 Aligned_cols=181 Identities=22% Similarity=0.379 Sum_probs=130.5
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 969 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~~ 969 (1203)
++-++|-++-..++.+.+.. +..++-+|.|+||+|||.++..+|... +..++.+++
T Consensus 169 lDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 44566777666666666542 112456899999999999999999876 567889999
Q ss_pred ccccc--ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch-hHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 970 SSITS--KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 970 seL~s--~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
..++. +|-|+.|..++.+..+..+..+.|||||||+.+.|.....+. -.+.+-+.-.| .++.+-+|+
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~IG 304 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCIG 304 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEEE
Confidence 88753 788999999999999999999999999999999987654332 33333333332 135677777
Q ss_pred ecCC-----CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC----CCC-CchhHHHHHHHcCCC
Q 000978 1047 ATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGY 1105 (1203)
Q Consensus 1047 TTN~-----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~----~l~-~d~dl~~LA~~T~G~ 1105 (1203)
+|.. ...-|+++-||| ..|.|..|+.++-..||+-+-.+. ++. .|..+...+.++.-|
T Consensus 305 ATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred eccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 7753 346688999999 688999999999999999876542 222 344455555544433
No 202
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.91 E-value=1.8e-08 Score=122.12 Aligned_cols=164 Identities=23% Similarity=0.319 Sum_probs=104.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHH-HHHHHHH---HhcCCceEEEccchhhccCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYV-KAVFSLA---SKIAPSVIFVDEVDSMLGRRE 1012 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I-~~lF~~A---~k~~PsILfIDEID~L~~~r~ 1012 (1203)
+-+||+||||-|||+||+.||++.|+.++.+++++-.+. ......| ..++... ....|.+|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC-----
Confidence 348999999999999999999999999999999874321 0111112 2222111 2357899999999822
Q ss_pred CCchhHHHHHHHHHHHH----hhcCCcccCC----------ccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHH
Q 000978 1013 NPGEHEAMRKMKNEFMV----NWDGLRTKDT----------ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNR 1076 (1203)
Q Consensus 1013 ~~~~~~al~~il~eLL~----~ldgl~~~~~----------~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR 1076 (1203)
..+.-.++..++. +..|-..... -.--||+.||... .|+|+. -|..+|+|.+|.....
T Consensus 400 ----~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 400 ----PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred ----cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHH
Confidence 1222222222222 1111111000 1235788888643 466654 6888999999999999
Q ss_pred HHHHHHHHhhCCCCCc-hhHHHHHHHcCCCcHHHHHHH
Q 000978 1077 AKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKNL 1113 (1203)
Q Consensus 1077 ~eIL~~~l~~~~l~~d-~dl~~LA~~T~G~Sg~DL~~L 1113 (1203)
.+-|+.++..+++..+ ..+..|+..+++....-|..|
T Consensus 474 v~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 474 VERLNEICHRENMRADSKALNALCELTQNDIRSCINTL 511 (877)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999998888744 456777777776444444433
No 203
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=1.9e-09 Score=128.10 Aligned_cols=205 Identities=24% Similarity=0.327 Sum_probs=130.0
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 972 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL- 972 (1203)
..+|++|.|-......+.+.+.. ..+....|||.|.+||||..+|++|-+.. +.|||.++|+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999998887777776642 12233579999999999999999998877 789999999765
Q ss_pred ----ccccccccHHH----H----HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCc
Q 000978 973 ----TSKWFGEGEKY----V----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1040 (1203)
Q Consensus 973 ----~s~~~G~~e~~----I----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~ 1040 (1203)
-+.+||..... . ..+|+.|.. +-||||||..| +..-+.-+.+++++-...--|....-+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 23334432221 1 235666655 79999999988 4444555556665532222232333357
Q ss_pred cEEEEEecCCCCCCcHHHHh---------cccccccCCCCCHHHHHHHHHH----HHhhCCCCCchhHHHHHHHcCCCcH
Q 000978 1041 RILVLAATNRPFDLDEAVIR---------RLPRRLMVNLPDAPNRAKILQV----ILAKEDLSPDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1041 ~VlVIaTTN~p~~Ld~aLlr---------RFd~~I~v~~Pd~eeR~eIL~~----~l~~~~l~~d~dl~~LA~~T~G~Sg 1107 (1203)
.|.||||||+ +|..++.. |+ .++.+..|...+|.+=+.. ++.+.. ....+...|.++
T Consensus 381 DVRIIAATN~--nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s-------~~~~~~v~~ls~ 450 (560)
T COG3829 381 DVRIIAATNR--NLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFS-------RRYGRNVKGLSP 450 (560)
T ss_pred EEEEEeccCc--CHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHH-------HHcCCCcccCCH
Confidence 8999999997 33333333 44 3566677877777653333 332211 112223346667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1108 SDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1108 ~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
..+..|.+.+|..++|++.+....
T Consensus 451 ~a~~~L~~y~WPGNVRELeNviER 474 (560)
T COG3829 451 DALALLLRYDWPGNVRELENVIER 474 (560)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHH
Confidence 777777777777777776555443
No 204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.90 E-value=2.6e-09 Score=126.86 Aligned_cols=204 Identities=20% Similarity=0.277 Sum_probs=124.2
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 973 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~-- 973 (1203)
...+++|.....+.+.+.+.. . ......|||+|++||||..+|++|-... +.|||.++|..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k-------v-----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK-------V-----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456778888888888777753 1 1122469999999999999999998776 6799999998752
Q ss_pred ---cccccccHHHH-------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEE
Q 000978 974 ---SKWFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1043 (1203)
Q Consensus 974 ---s~~~G~~e~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~Vl 1043 (1203)
+.++|+..... ...|+.|.. +.||||||..| +...+.-+.+++++--..--|....-+-+|-
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 23455433211 125565555 89999999988 3333444444444321111122222346789
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHH
Q 000978 1044 VLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN 1112 (1203)
Q Consensus 1044 VIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----IL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~ 1112 (1203)
||++||.. ..+-+.|--|+ .++.+..|...+|.+ ++++++.+.. .+......++++..+..
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~-------~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFA-------AELGRPPKGFSPEALAA 350 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHH-------HHcCCCCCCCCHHHHHH
Confidence 99999973 23344555577 577888888888876 3333332211 01111223556666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000978 1113 LCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1113 L~~~Aa~~airel~~~~~ 1130 (1203)
|+...|..++|++.+...
T Consensus 351 L~~y~WPGNVREL~N~ve 368 (464)
T COG2204 351 LLAYDWPGNVRELENVVE 368 (464)
T ss_pred HHhCCCChHHHHHHHHHH
Confidence 666666666666554443
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.89 E-value=8.5e-09 Score=101.63 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhccCC-CeEEEEcchhhhhcCC--------cchhhhHHHHHhcCCC---cEEEEeeeccCCCcccc
Q 000978 642 LINTLFEVVFSESRSC-PFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLPD---KVIVIGSHTHTDNRKEK 706 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~-p~Ilfiddi~~~l~~~--------~~~~~~lk~~L~~l~g---~V~vIGst~~~d~~~~~ 706 (1203)
.+..+|+.+.. .. |+||||||+|.+.... ....+.|...|+.... +++|||++|..+..++.
T Consensus 45 ~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~ 118 (132)
T PF00004_consen 45 KIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPA 118 (132)
T ss_dssp HHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHH
T ss_pred ccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHh
Confidence 46666666666 55 9999999999988755 3445555556655544 69999999987643333
No 206
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.4e-08 Score=116.72 Aligned_cols=180 Identities=13% Similarity=0.234 Sum_probs=120.4
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~----------fi~I~ 968 (1203)
.|+++.|++.+++.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 478999999999999998863 2333689999999999999999999987221 11111
Q ss_pred ccccc---------ccc--------cc-------c-cHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHH
Q 000978 969 MSSIT---------SKW--------FG-------E-GEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEA 1019 (1203)
Q Consensus 969 ~seL~---------s~~--------~G-------~-~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a 1019 (1203)
.+++. ++. .| . .-..++.+...+.. ....|++||++|.| +
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~------ 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----N------ 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----C------
Confidence 12211 000 00 0 01234555444433 24579999999988 2
Q ss_pred HHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHH
Q 000978 1020 MRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIA 1099 (1203)
Q Consensus 1020 l~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA 1099 (1203)
....+.|+..++.. + +.++|.+|+.++.|-+.+++|+ ..+.|..++.++..+++......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 23345566666553 2 4466677788899999999999 78999999999999999876432221 22357788
Q ss_pred HHcCCCcHHHHH
Q 000978 1100 NMTDGYSGSDLK 1111 (1203)
Q Consensus 1100 ~~T~G~Sg~DL~ 1111 (1203)
..+.|-.+..+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 888886555544
No 207
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.88 E-value=3.1e-09 Score=125.44 Aligned_cols=83 Identities=20% Similarity=0.414 Sum_probs=72.0
Q ss_pred cceeeeCCeEEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEecCCceEEc--CeeecCCCeeEccCCCEE
Q 000978 138 SNVPICASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVN--GKNLKKNTSCELRSGDEV 213 (1203)
Q Consensus 138 ~~l~i~~~~~tvGr~~~cd~~l~~~~--~s~~~c~i~~~~~~~~~~~~led~s~nGt~VN--g~~~~k~~~~~L~~gDeI 213 (1203)
..+.+....++|||+..||++|.+.. ||..||+|... ++ .++|+|+|+|||||| |..|+++..+.|+.||+|
T Consensus 17 ~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g--~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 17 AQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DG--AYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred eEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CC--EEEEEECCCCCeEECCCCCCCCCCCceEcCCCCEE
Confidence 46677788999999999999999998 99999999965 23 479999999999999 999999999999999999
Q ss_pred EEeecCCeEEE
Q 000978 214 VFGSLGNHAYI 224 (1203)
Q Consensus 214 ~f~~~~~~~yi 224 (1203)
.|+...-++++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99875544443
No 208
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=5.3e-08 Score=112.70 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=104.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 989 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~------------------------fi~I~~seL~s~~~G~~e~~I~~lF~ 989 (1203)
+.+..+||+||+|+|||++|+++|+.+.+. ++.+....- +. .-.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 344689999999999999999999998431 222222100 00 012234555555
Q ss_pred HHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 000978 990 LASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1065 (1203)
Q Consensus 990 ~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~ 1065 (1203)
.+.. ....|++||++|.|- ....|.|+..++.- +.++++|.+|+.++.|.+.+++|+ ..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc-~~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRC-QQ 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhc-ee
Confidence 4443 345799999999882 34456666666652 467888899999999999999999 56
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHH
Q 000978 1066 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1110 (1203)
Q Consensus 1066 I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL 1110 (1203)
+.|.+|+.++..+.+..... ...+.+...++..+.|-.+..+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHHHH
Confidence 99999999988888875431 1234445566777777554433
No 209
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.86 E-value=8.4e-09 Score=117.67 Aligned_cols=146 Identities=20% Similarity=0.298 Sum_probs=96.8
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 961 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-------------------- 961 (1203)
++.+.+.....+...+.. .+ +-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 345566666666665542 11 1223599999999999999999999996
Q ss_pred ----CcEEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcC
Q 000978 962 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1203)
Q Consensus 962 ----~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldg 1033 (1203)
..|+.++.++..... -....++.+-...... ...||+|||+|.|. ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 467777776643321 1233445544443332 45799999999883 1334445444443
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1034 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1034 l~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
...+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+..
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHH
Confidence 3467888999999999999999999 677887755444333
No 210
>PRK04132 replication factor C small subunit; Provisional
Probab=98.85 E-value=2.5e-08 Score=126.46 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=119.3
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcC------CceEE
Q 000978 934 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVIF 1000 (1203)
Q Consensus 934 ~P~~gVLL~G--PPGTGKT~LArALA~eL-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~------PsILf 1000 (1203)
-|.-+-+..| |++.|||++|++||+++ +.+++.+++++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3444567778 99999999999999998 56899999987432 234555554433222 36999
Q ss_pred EccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHH
Q 000978 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1203)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL 1080 (1203)
|||+|.| +.. ..+.|+..++.. ..++.+|++||.+..+.+.+++|+ ..+.|.+|+.++....+
T Consensus 636 IDEaD~L-----t~~-------AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQD-------AQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHH-------HHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999988 222 233444444432 457889999999999999999999 78999999999999999
Q ss_pred HHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1081 QVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1081 ~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
+.++.++++. ++..+..|+..++|-....|..| +.++
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L-q~~~ 736 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAA 736 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 9998877765 56678999999999666665444 4433
No 211
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.84 E-value=2.7e-08 Score=117.97 Aligned_cols=122 Identities=24% Similarity=0.328 Sum_probs=76.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc----cccccc----cccc--HHHHHHHHHHHHhc--CCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS----SITSKW----FGEG--EKYVKAVFSLASKI--APS 997 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~--~-----fi~I~~s----eL~s~~----~G~~--e~~I~~lF~~A~k~--~Ps 997 (1203)
++++|+||||||||++|+++|..+.. . ++.+... +++..+ .|.. ...+..+...|... .|.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 57999999999999999999998842 1 2222211 122111 1100 12233444556543 478
Q ss_pred eEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCC------------------cccCCccEEEEEecCCCC----CCc
Q 000978 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------------------RTKDTERILVLAATNRPF----DLD 1055 (1203)
Q Consensus 998 ILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl------------------~~~~~~~VlVIaTTN~p~----~Ld 1055 (1203)
|||||||++- + +.+++.+++..++.- .-.-+.++.||||+|..+ .+|
T Consensus 275 vliIDEINRa-----n------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 275 VFIIDEINRA-----N------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred EEEEehhhcc-----C------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 9999999854 1 134445555544411 012357899999999886 799
Q ss_pred HHHHhcccccccCCC
Q 000978 1056 EAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1056 ~aLlrRFd~~I~v~~ 1070 (1203)
.|++||| ..|.+.+
T Consensus 344 ~AlrRRF-~fi~i~p 357 (459)
T PRK11331 344 YALRRRF-SFIDIEP 357 (459)
T ss_pred HHHHhhh-heEEecC
Confidence 9999999 4555553
No 212
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.83 E-value=1.4e-09 Score=108.55 Aligned_cols=113 Identities=31% Similarity=0.446 Sum_probs=67.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-cc-cccccccc----HH-----HHHHHHHHHHhcCCceEEEccchh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SI-TSKWFGEG----EK-----YVKAVFSLASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s-eL-~s~~~G~~----e~-----~I~~lF~~A~k~~PsILfIDEID~ 1006 (1203)
+|||.|+||+|||++|+++|+.++..|.+|.+. ++ -+...|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999998773 33 11222211 00 001111 25999999986
Q ss_pred hccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC-----CCcHHHHhcc
Q 000978 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-----DLDEAVIRRL 1062 (1203)
Q Consensus 1007 L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~-----~Ld~aLlrRF 1062 (1203)
. .+..+.++.+++++--..+++....-+.+++||||-|+.+ .|+++++.||
T Consensus 74 a-----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 A-----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred C-----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 5 5556667667777666666665555668899999999865 7889999998
No 213
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.83 E-value=4.2e-08 Score=121.90 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~ 963 (1203)
.-++++.|+++++..++..+.. ..+++|+||||||||++++++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 5678999999999988887752 1379999999999999999999999543
No 214
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.82 E-value=1.6e-09 Score=116.49 Aligned_cols=45 Identities=42% Similarity=0.599 Sum_probs=36.9
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
|.+|.|++..|..|.-.... ..++||+||||||||++|+++...|
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999998876653 1589999999999999999999776
No 215
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.81 E-value=2.6e-08 Score=115.43 Aligned_cols=133 Identities=18% Similarity=0.273 Sum_probs=78.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHH-------HHHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfI 1001 (1203)
..|||+|++||||+++|++|.... +.||+.++|..+... .+|..... -...|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 469999999999999999998766 579999999875322 22211110 01123333 3489999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
|||+.| +...+..+.++++.-...-.+.......++.||++|+.. ..+.+.+..||. .+.+..|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999988 322222222222211000001111123567889888753 245567777883 4566667666
Q ss_pred HHHH
Q 000978 1075 NRAK 1078 (1203)
Q Consensus 1075 eR~e 1078 (1203)
+|.+
T Consensus 174 eR~e 177 (329)
T TIGR02974 174 ERQE 177 (329)
T ss_pred hhhh
Confidence 6655
No 216
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.80 E-value=8.3e-08 Score=114.73 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=77.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-cccccccccc-HHHH--HHHHHHHHhc---CCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFGEG-EKYV--KAVFSLASKI---APSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~--~fi~I~~s-eL~s~~~G~~-e~~I--~~lF~~A~k~---~PsILfIDEID~L 1007 (1203)
.+|||+||||||||++|++++..++. +|..+.+. ......+|.. -... ...|...... ...+||+|||..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 47999999999999999999998742 44444332 1122333321 0000 1122211111 2249999999855
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC---CCcHHHHhcccccccCCCCC-HHHHHHHHHHH
Q 000978 1008 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPRRLMVNLPD-APNRAKILQVI 1083 (1203)
Q Consensus 1008 ~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~~I~v~~Pd-~eeR~eIL~~~ 1083 (1203)
++..+..+..++++-....++-...-+.+++|++| |... ...+++..||-..+.+++|+ .++..+++...
T Consensus 120 -----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 120 -----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 33333333333333222222222222345555555 6322 23458999998889999997 45657777653
No 217
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.78 E-value=3.4e-08 Score=114.29 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=91.4
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 974 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-- 974 (1203)
++++.|.....+.+.+.+... . .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-------a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-------A-----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 456777777666666665431 1 112469999999999999999998665 57999999987631
Q ss_pred ---ccccccHHH-------HHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------cc
Q 000978 975 ---KWFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1037 (1203)
Q Consensus 975 ---~~~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~ 1037 (1203)
.++|..... ....+..| ..+.|||||||.| +.. +...|+..++... ..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~-------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PML-------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHH-------HHHHHHHHHhcCcEEeCCCCce
Confidence 222321110 01123333 3489999999988 222 2222333332211 11
Q ss_pred CCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1038 DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1038 ~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
...++.||+||+.. ..+.+.+..||. .+.+..|...+|.+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQS 184 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhh
Confidence 12357888888753 356677777883 45666777666655
No 218
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.78 E-value=2.2e-08 Score=123.11 Aligned_cols=195 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s 974 (1203)
.++++++|.....+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 567889998888877777665311 122469999999999999999999876 67999999987632
Q ss_pred c-----cccccHHHH-------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------
Q 000978 975 K-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------- 1035 (1203)
Q Consensus 975 ~-----~~G~~e~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~------- 1035 (1203)
. .+|...... ...|..| ..++||||||+.| +...+ ..|+..++...
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q-------~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQ-------AKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHH-------HHHHHHHhcCcEEECCCC
Confidence 2 122211000 0012222 3489999999988 22222 22333332211
Q ss_pred ccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHH----HHHHHHHHhhCCCCCchhHHHHHHHcCC
Q 000978 1036 TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAKEDLSPDVDFDAIANMTDG 1104 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR----~eIL~~~l~~~~l~~d~dl~~LA~~T~G 1104 (1203)
.....++.+|++|+.. ..+.+.+..|+. .+.+..|...+| ..|++.++..... ..... .+
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~-------~~~~~-~~ 396 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNR-------ENGRP-LT 396 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHH-------HcCCC-CC
Confidence 1112357888888753 245566666773 445555555544 3455555543210 00001 24
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1105 YSGSDLKNLCVTAAHRPIKEILEK 1128 (1203)
Q Consensus 1105 ~Sg~DL~~L~~~Aa~~airel~~~ 1128 (1203)
++...+..|...-|..+++++.+.
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v 420 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENC 420 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHH
Confidence 555555555555555555555443
No 219
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.78 E-value=2.5e-08 Score=117.40 Aligned_cols=203 Identities=20% Similarity=0.274 Sum_probs=126.1
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 972 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL- 972 (1203)
...+.+|+|.......+.+.|.. .. .....|||.|.+||||..+|++|-+.. +-|||.++|+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-------VA-----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-------VA-----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-------Hh-----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 56677888988888887777753 11 122469999999999999999998877 789999999875
Q ss_pred ----ccccccccHHHH-------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCcc
Q 000978 973 ----TSKWFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1041 (1203)
Q Consensus 973 ----~s~~~G~~e~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~ 1041 (1203)
-+..||+-..+. ..-|+.|.. +-||+|||..| +...+.-+.+++++--..--|....-...
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEEE
Confidence 334555433322 123555555 79999999988 55555656666665321111222222467
Q ss_pred EEEEEecCCCCCCcHHHHh-ccc-------ccccCCCCCHHHHHH----HHHHHHh----hCCCC----CchhHHHHHHH
Q 000978 1042 ILVLAATNRPFDLDEAVIR-RLP-------RRLMVNLPDAPNRAK----ILQVILA----KEDLS----PDVDFDAIANM 1101 (1203)
Q Consensus 1042 VlVIaTTN~p~~Ld~aLlr-RFd-------~~I~v~~Pd~eeR~e----IL~~~l~----~~~l~----~d~dl~~LA~~ 1101 (1203)
|-|||+||+ +|..++.. +|. .++.+..|...+|.+ +.+.+++ ..+.. +...++.|.++
T Consensus 359 VRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 359 VRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 899999997 55555554 332 234445566666543 2333333 23321 12223444443
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 000978 1102 TDGYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1102 T~G~Sg~DL~~L~~~Aa~~a 1121 (1203)
.=--+.++|.+++.+|+..+
T Consensus 437 ~wPGNVRELen~veRavlla 456 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 32235688999999888755
No 220
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.6e-07 Score=108.78 Aligned_cols=149 Identities=14% Similarity=0.114 Sum_probs=102.5
Q ss_pred ccccccc-cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 899 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 899 t~~dI~G-le~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.|+.|.| ++.+.+.|+..+.. .+.+..+||+||+|+||+++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899988887753 2344678999999999999999999987321
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+- ....+.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 2222111 010 11223444444333 2234699999999882 234456666
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1082 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~ 1082 (1203)
.++.. +..+++|.+|+.+..|-+.+++|+ ..++|..|+.++..++++.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 66653 456777778888889999999999 7899999999888776653
No 221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.76 E-value=2.4e-08 Score=116.96 Aligned_cols=199 Identities=24% Similarity=0.360 Sum_probs=114.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEeccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSIT 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e----Lg~~fi~I~~seL~ 973 (1203)
..+.+++|...-.+.+++.+.. + ..-..+|||+|++||||+.+|++|... .+.|||.++|+.+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567788887777777766653 1 112246999999999999999999643 37899999998763
Q ss_pred cc-----cccccHHHH-------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCcc
Q 000978 974 SK-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1041 (1203)
Q Consensus 974 s~-----~~G~~e~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~ 1041 (1203)
.. .+|..+... ..+|+.|.. ++||+|||..| +...+..+-++++.--..--|-.......
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 32 333322221 235565555 89999999988 44445544444443221111112234567
Q ss_pred EEEEEecCCCCCCcHHHHh-------cccccccCCCCCHHHHHH----HHHHHH----hhCCCCCchh----HHHHHHH-
Q 000978 1042 ILVLAATNRPFDLDEAVIR-------RLPRRLMVNLPDAPNRAK----ILQVIL----AKEDLSPDVD----FDAIANM- 1101 (1203)
Q Consensus 1042 VlVIaTTN~p~~Ld~aLlr-------RFd~~I~v~~Pd~eeR~e----IL~~~l----~~~~l~~d~d----l~~LA~~- 1101 (1203)
|.+|++|+. +++..++. ++ .+.+.+|...+|.. +++.++ .+.+.....+ +..|-..
T Consensus 215 VRli~AT~~--~l~~~~~~g~dl~~rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~ 290 (403)
T COG1221 215 VRLICATTE--DLEEAVLAGADLTRRLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYD 290 (403)
T ss_pred ceeeecccc--CHHHHHHhhcchhhhhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 888988875 34444333 33 34556666666643 333333 3333332211 1222222
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 000978 1102 TDGYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1102 T~G~Sg~DL~~L~~~Aa~~a 1121 (1203)
..| +.++|++++..++..+
T Consensus 291 ~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 291 WPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred CCC-cHHHHHHHHHHHHHHh
Confidence 123 4567777777776654
No 222
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.75 E-value=3.6e-07 Score=103.40 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=111.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccc------c---cccc-------ccHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT------S---KWFG-------EGEKYVKAVFSLA 991 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~seL~------s---~~~G-------~~e~~I~~lF~~A 991 (1203)
.++||+|++|.|||++++.++... .+|++.+.++.-- . ..+| .......++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 3578888774320 0 0011 1123334556677
Q ss_pred HhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC--CCCcHHHHhcccccccCC
Q 000978 992 SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p--~~Ld~aLlrRFd~~I~v~ 1069 (1203)
+.....+|+|||++.++.... ...+.+++.| +.+...-.-.++.+||-... -.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~L----K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNAL----KFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHH----HHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 788899999999999864432 1223333333 33322223456666664332 345688999994 44554
Q ss_pred CC-CHHHHHHHHHHHHhhCCCC------CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 000978 1070 LP-DAPNRAKILQVILAKEDLS------PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1070 ~P-d~eeR~eIL~~~l~~~~l~------~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
.- .-++-..++..+-...++. ...-...|-.+++|..| +|..|+..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 42 2344555666655544433 22223567788898766 8999999999988873
No 223
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.74 E-value=6.3e-08 Score=118.71 Aligned_cols=159 Identities=24% Similarity=0.354 Sum_probs=93.5
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 973 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~ 973 (1203)
..+|+++.|.....+.+.+.+.. +.. .. ..|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~--~~---~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM--LD---APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC--CC---CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45788899988766666655532 111 12 359999999999999999987655 5799999998763
Q ss_pred cc-----cccccHH-------HHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc--ccCC
Q 000978 974 SK-----WFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--TKDT 1039 (1203)
Q Consensus 974 s~-----~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~--~~~~ 1039 (1203)
.. .+|.... .-..+|+.|. .+.||||||+.| +...+..+.++++.- .+.... ....
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~--~~~~~g~~~~~~ 337 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDG--TFRRVGEDHEVH 337 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcC--CcccCCCCccee
Confidence 21 2232110 0112344443 489999999988 222222222222210 011110 0112
Q ss_pred ccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1040 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1040 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
.++.||++|+.. ..+.+.+..|+. .+.+..|...+|.+
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~ 382 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQ 382 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChh
Confidence 457788888753 235566777774 36667777666653
No 224
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=1.5e-07 Score=114.38 Aligned_cols=153 Identities=25% Similarity=0.316 Sum_probs=87.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 961 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---------------- 961 (1203)
..|.++.|...+++.+.-.+. ...+++|.||||+|||++|++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478899999888776554332 125799999999999999999987541
Q ss_pred ------------CcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 962 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 962 ------------~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
.||....++......+|.....-...+..|. .++||||||+.+ +...++.++..++.-..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 1222222111111111111000111233333 389999999977 22222222222221110
Q ss_pred hh--cCCcccCCccEEEEEecCCC-----C------------------CCcHHHHhcccccccCCCCCHH
Q 000978 1030 NW--DGLRTKDTERILVLAATNRP-----F------------------DLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1030 ~l--dgl~~~~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
.+ .+.......++.+|+++|.. . .+...+++||+..+.++.++.+
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 00 11111224678999999863 1 4778899999999988876544
No 225
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.73 E-value=6.1e-08 Score=118.50 Aligned_cols=168 Identities=21% Similarity=0.361 Sum_probs=99.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 966 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e-----------Lg~~fi~ 966 (1203)
.+|+++.|.....+.+++.+.. +. .....|||+|++||||+++|++|-+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4578899988888877777653 11 11246999999999999999999887 3679999
Q ss_pred Eecccccc-----ccccccHHHH--------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcC
Q 000978 967 ISMSSITS-----KWFGEGEKYV--------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1203)
Q Consensus 967 I~~seL~s-----~~~G~~e~~I--------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldg 1033 (1203)
++|..+.. ..+|..+... ..+|+.|. .+.||||||+.| +...+..+.+++++--...-+
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987632 2333222111 12455444 389999999988 322232222222211000001
Q ss_pred CcccCCccEEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhh
Q 000978 1034 LRTKDTERILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK 1086 (1203)
Q Consensus 1034 l~~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~v~~Pd~eeR~e----IL~~~l~~ 1086 (1203)
....-..++.||++|+..- .+.+.+..|+ ..+.+..|...+|.+ +++.++.+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHH
Confidence 1111134568888887631 2333444555 346677777776654 44555543
No 226
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.72 E-value=1e-07 Score=119.63 Aligned_cols=160 Identities=19% Similarity=0.279 Sum_probs=92.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~- 973 (1203)
.+|+++.|.....+.+.+.+... . .....|||+|++||||+++|++|.+.. +.+|+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-------a-----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-------A-----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-------h-----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46788888877777666655421 1 112359999999999999999998876 5799999998763
Q ss_pred ----cccccccHH----HHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 974 ----SKWFGEGEK----YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 974 ----s~~~G~~e~----~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
+.++|.... .....|+.| ..++||||||+.| +...+..+.+++++-...--+.......++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 223332100 000123322 3489999999988 322222222222211000000000112367889
Q ss_pred EecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1046 AATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1046 aTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
+||+.. ..+.+.+..|+ ..+.+.+|...+|.+
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~ 500 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRRE 500 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhh
Confidence 988863 23444455555 346677777777754
No 227
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=9.2e-08 Score=107.71 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=59.9
Q ss_pred CceEEEccchhhccCCCCCchhHHHH-HHHHHHHHhhcCCcc------cCCccEEEEEec----CCCCCCcHHHHhcccc
Q 000978 996 PSVIFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPR 1064 (1203)
Q Consensus 996 PsILfIDEID~L~~~r~~~~~~~al~-~il~eLL~~ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~ 1064 (1203)
.+||||||||.++.+....+. ...+ -+...||-.+.|-.- ....++++||+. ..|.+|-|++.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 359999999999866542221 2222 233345544554321 134789999885 5688999999999999
Q ss_pred cccCCCCCHHHHHHHHH
Q 000978 1065 RLMVNLPDAPNRAKILQ 1081 (1203)
Q Consensus 1065 ~I~v~~Pd~eeR~eIL~ 1081 (1203)
++++...+.++-.+||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888874
No 228
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.70 E-value=3.5e-07 Score=105.38 Aligned_cols=65 Identities=38% Similarity=0.563 Sum_probs=44.2
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccc
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSI 972 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL 972 (1203)
..+.++|+.+.++..--.+.+ ...+ ....+++||.||||||||.||-++|++|| .||+.++.+++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~m-------Ik~~--K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDM-------IKEG--KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHH-------HHTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHH-------Hhcc--cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 346789999998877655542 1112 12337899999999999999999999995 78876666554
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=5.3e-07 Score=99.58 Aligned_cols=181 Identities=19% Similarity=0.317 Sum_probs=126.1
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecccc---
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSSI--- 972 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-g--~~fi~I~~seL--- 972 (1203)
+++.+.+.++....|+.+... ....++|+|||+|+||-|.+.++.+++ | .+=.++....+
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 456677778887777766531 223589999999999999999999998 3 22122211111
Q ss_pred ----------ccc--------cccccHH-HHHHHHHHHHhc---------CCceEEEccchhhccCCCCCchhHHHHHHH
Q 000978 973 ----------TSK--------WFGEGEK-YVKAVFSLASKI---------APSVIFVDEVDSMLGRRENPGEHEAMRKMK 1024 (1203)
Q Consensus 973 ----------~s~--------~~G~~e~-~I~~lF~~A~k~---------~PsILfIDEID~L~~~r~~~~~~~al~~il 1024 (1203)
.+. -.|.... .+..+..+.... ...|++|-|+|.| ....+.++++.+
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRTM 151 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRTM 151 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHHH
Confidence 111 1222222 334454444333 2359999999999 445677778877
Q ss_pred HHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcC
Q 000978 1025 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1103 (1203)
Q Consensus 1025 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~ 1103 (1203)
+-. ..++-+|..+|....+-+.+++|+ ..|.++.|+.++...++...+.++++. +..-+..||+.++
T Consensus 152 EkY-----------s~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 152 EKY-----------SSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHH-----------hcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 665 245677777888889999999998 678999999999999999999998876 4555788888888
Q ss_pred CCcHHHH
Q 000978 1104 GYSGSDL 1110 (1203)
Q Consensus 1104 G~Sg~DL 1110 (1203)
|--.+.|
T Consensus 220 ~nLRrAl 226 (351)
T KOG2035|consen 220 RNLRRAL 226 (351)
T ss_pred ccHHHHH
Confidence 7655554
No 230
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.67 E-value=9.2e-08 Score=116.96 Aligned_cols=167 Identities=23% Similarity=0.330 Sum_probs=98.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s 974 (1203)
.+|+++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688899998888777777653 11 112469999999999999999998765 67999999987632
Q ss_pred -----ccccccHHH--------HHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCcc
Q 000978 975 -----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1041 (1203)
Q Consensus 975 -----~~~G~~e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~ 1041 (1203)
.++|..+.. -..+|+.|. .+.||||||+.| +...+..+.+++++--...-+.......+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 233322111 122444443 389999999988 32233333333222100000111111235
Q ss_pred EEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHHH----HHHHHHh
Q 000978 1042 ILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA 1085 (1203)
Q Consensus 1042 VlVIaTTN~p~-------~Ld~aLlrRFd~~I~v~~Pd~eeR~e----IL~~~l~ 1085 (1203)
+.+|++|+..- .+.+.+..|+ ..+.+..|...+|.+ +++.++.
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHH
Confidence 67888887641 2333444455 245666777666654 4444444
No 231
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=9.6e-07 Score=102.03 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------
Q 000978 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 963 (1203)
Q Consensus 905 Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~--------------------- 963 (1203)
.+....+.|...+.. .+-+..+||+||+|+||+++|+++|+.+-+.
T Consensus 6 W~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~ 72 (325)
T PRK06871 6 WLQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGN 72 (325)
T ss_pred chHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 445566666666542 2334689999999999999999999988321
Q ss_pred ---EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc
Q 000978 964 ---FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1036 (1203)
Q Consensus 964 ---fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~ 1036 (1203)
|+.+...+ ++. -.-..++.+...+. .....|++||++|.|- ....|.||..++.
T Consensus 73 HPD~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE--- 133 (325)
T PRK06871 73 HPDFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE--- 133 (325)
T ss_pred CCCEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC---
Confidence 22222110 111 12334555544443 3345699999999882 2344566666665
Q ss_pred cCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHH
Q 000978 1037 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109 (1203)
Q Consensus 1037 ~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~D 1109 (1203)
++.++++|.+|+.++.|.+.+++|+ ..+.|.+|+.++..+.|..... ........+++.+.|-.+..
T Consensus 134 -Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 134 -PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPLLA 200 (325)
T ss_pred -CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHHHH
Confidence 3567889999999999999999999 6889999999988887776431 12223445566666644433
No 232
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.66 E-value=1.3e-07 Score=115.66 Aligned_cols=151 Identities=18% Similarity=0.292 Sum_probs=93.0
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 974 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-- 974 (1203)
+.+++|.....+.+.+.+.. +. .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~-------~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV-------VA-----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 45677877777777776653 11 112469999999999999999998875 57999999987632
Q ss_pred ---ccccccHHHH-------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------cc
Q 000978 975 ---KWFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1037 (1203)
Q Consensus 975 ---~~~G~~e~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~ 1037 (1203)
.++|...... ...|+.| ..+.|||||||.| +...+ ..|+..++... ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----~~~~Q-------~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----PLALQ-------AKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----CHHHH-------HHHHHHHhcCCEeeCCCCcc
Confidence 2233211110 1124433 3489999999988 22222 22333232211 11
Q ss_pred CCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1038 DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1038 ~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
...++.||++|+.. ..+.+.+..|+. .+.+..|...+|.+
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGD 365 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchh
Confidence 22467889998863 235566666663 45667777777654
No 233
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=3.4e-07 Score=113.64 Aligned_cols=192 Identities=15% Similarity=0.205 Sum_probs=115.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecc---ccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMS---SIT 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~-I~~s---eL~ 973 (1203)
.+++++.++++..+.++.++..... ...+.+-++|+||||+|||++++.+|++++..++. ++.. ...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~---------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL---------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc---------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 5789999999999988887753111 02233459999999999999999999999876544 1111 000
Q ss_pred ---------cccc---cccHHHHHHHHHHHHh----------cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH-h
Q 000978 974 ---------SKWF---GEGEKYVKAVFSLASK----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-N 1030 (1203)
Q Consensus 974 ---------s~~~---G~~e~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~-~ 1030 (1203)
...+ ......+..++..+.. ....|||||||+.++.. ...+ ++.++. .
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----~~~~----lq~lLr~~ 222 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----DTRA----LHEILRWK 222 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----hHHH----HHHHHHHH
Confidence 0001 1122334444444432 24569999999987532 1122 333333 1
Q ss_pred hcCCcccCCccEEEEEecC-CCC--------------CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCC----
Q 000978 1031 WDGLRTKDTERILVLAATN-RPF--------------DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL---- 1089 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN-~p~--------------~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l---- 1089 (1203)
... ..++.+|++++ .+. .|.+++++ |. .+|.|++.+.....+.|+.++..+..
T Consensus 223 ~~e-----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 223 YVS-----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred hhc-----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 111 12233333332 111 13477876 44 47899999999988888888876421
Q ss_pred ----CCchhHHHHHHHcCCCcHHHHHHH
Q 000978 1090 ----SPDVDFDAIANMTDGYSGSDLKNL 1113 (1203)
Q Consensus 1090 ----~~d~dl~~LA~~T~G~Sg~DL~~L 1113 (1203)
.....+..|+....|-....|..|
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 123457788887777666666554
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.65 E-value=2.2e-07 Score=117.59 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=94.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s 974 (1203)
.+|.++.|.....+.+.+.+... . .....|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-------a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-------A-----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 35778899888877777666531 1 112469999999999999999998765 67999999987532
Q ss_pred -----ccccccHH-------HHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccE
Q 000978 975 -----KWFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 1042 (1203)
Q Consensus 975 -----~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~V 1042 (1203)
.++|.... .....|+.| ..++||||||+.| +...+..+.+++++-....-+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 23332111 011233333 3489999999988 222222222222211000001111113567
Q ss_pred EEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1043 LVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1043 lVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
.+|++|+.. ..+...+..|+ ..+.+..|...+|.+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPE 554 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHh
Confidence 889988763 23344455565 345667777777765
No 235
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1e-06 Score=102.40 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 989 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~------------------------fi~I~~seL~s~~~G~~e~~I~~lF~ 989 (1203)
+-+..+||+||+|+||+++|.++|+.+-+. ++.+....- ... -.-..++.+..
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence 445789999999999999999999988321 222221100 000 11223444444
Q ss_pred HHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 000978 990 LAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1065 (1203)
Q Consensus 990 ~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~ 1065 (1203)
.+. .....|++||++|.|- ...-|.||..++. ++.++++|.+|+.++.|-+.+++|+ ..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 433 3345799999999882 3345666666665 3577899999999999999999999 47
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHH
Q 000978 1066 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1110 (1203)
Q Consensus 1066 I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL 1110 (1203)
+.|++|+.++..+.+... .+.. ......+++.+.|-.+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 899999988877776532 2222 3335566777777555444
No 236
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=2.9e-08 Score=104.42 Aligned_cols=106 Identities=22% Similarity=0.410 Sum_probs=62.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHH-------HHHHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEK-------YVKAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-----~~~G~~e~-------~I~~lF~~A~k~~PsILfI 1001 (1203)
..|||+|++||||+.+|++|.+.. +.||+.++|+.+.. .++|.... .-..+|+.|.. ++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 569999999999999999998866 57999999987632 23333211 11245566555 89999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
|||+.| +...+..+.++++.-....-+-......++.||++|+.
T Consensus 100 d~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999998 32223222222221100001111112357999999986
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.59 E-value=6.8e-07 Score=108.73 Aligned_cols=228 Identities=20% Similarity=0.232 Sum_probs=138.5
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 972 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~~seL 972 (1203)
+.+-+.....+..++...+.. + .-...+.+.|-||||||.+++.+-.+| .+.++.|++-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----Q----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----C----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 344455556666665542221 0 111369999999999999999998866 478888887554
Q ss_pred cc----------ccccccH------HHHHHHHH-HHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc
Q 000978 973 TS----------KWFGEGE------KYVKAVFS-LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1203)
Q Consensus 973 ~s----------~~~G~~e------~~I~~lF~-~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~ 1035 (1203)
.+ .+.|+.. ..+..-|. ...+..++||+|||+|.|+.+. ..+ |..+-..+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~---------QdV----lYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS---------QDV----LYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc---------HHH----HHHHhcCC
Confidence 32 1222211 11122222 1123457899999999997543 122 33333344
Q ss_pred ccCCccEEEEEecCCCCCCcHHHH-----hccc-ccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHH-
Q 000978 1036 TKDTERILVLAATNRPFDLDEAVI-----RRLP-RRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS- 1108 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p~~Ld~aLl-----rRFd-~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~- 1108 (1203)
...+.+++||+.+|.-+ |++.++ +|++ .+|.|.+++.++..+|+...+...........+.+|+.-...+|.
T Consensus 536 t~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred cCCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 45678999999988754 333333 3654 468899999999999999998776444333445555554444442
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccc
Q 000978 1109 -DLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1109 -DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
.-..+|++|+..+-.+.. . ........|++-|+.+|+..+..+.-
T Consensus 615 Rraldic~RA~Eia~~~~~-~------------------~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNV-K------------------GKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHHHHHHhhhhcc-c------------------ccccccceeehHHHHHHHHHHhhhhH
Confidence 233567777765443321 0 01112246899999999999876643
No 238
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.7e-07 Score=105.75 Aligned_cols=94 Identities=14% Similarity=0.238 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC--CcchhhhHHHHHhcC-------CCcEEEEeeeccCCCccccCCCCCc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDSYSTFKSRLEKL-------PDKVIVIGSHTHTDNRKEKSHPGGL 712 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~--~~~~~~~lk~~L~~l-------~g~V~vIGst~~~d~~~~~~~~~~~ 712 (1203)
.|..||+-+++ ...-++|||||.|-+++. ...+.....+.|..+ +..|+++=++|++.+
T Consensus 430 kiH~lFDWakk--S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd---------- 497 (630)
T KOG0742|consen 430 KIHKLFDWAKK--SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---------- 497 (630)
T ss_pred HHHHHHHHHhh--cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc----------
Confidence 47778888866 267899999999999983 344445556666433 447888888998864
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhh
Q 000978 713 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDS 780 (1203)
Q Consensus 713 ~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~ 780 (1203)
.|.+++-||+..|+++||.+|+|.++|+..+++..
T Consensus 498 ---------------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 498 ---------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred ---------------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999998877754
No 239
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.57 E-value=1.1e-07 Score=120.09 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=107.7
Q ss_pred HHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhh---cC----CCCCCCceEEEEcCCCChHHHH
Q 000978 880 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTML 952 (1203)
Q Consensus 880 ~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~---k~----~~~~P~~gVLL~GPPGTGKT~L 952 (1203)
.++...+...+.| .|.|++.+|+.+.-.+........... .+ ...+...+|||.|+||||||.+
T Consensus 438 p~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqL 508 (915)
T PTZ00111 438 PMIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQL 508 (915)
T ss_pred HHHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHH
Confidence 3444446666665 688999999888666554322110000 00 1123345799999999999999
Q ss_pred HHHHHHHhC-------CcEEEEeccccccccccc--cHHHH-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHH
Q 000978 953 AKAVATEAG-------ANFINISMSSITSKWFGE--GEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRK 1022 (1203)
Q Consensus 953 ArALA~eLg-------~~fi~I~~seL~s~~~G~--~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~ 1022 (1203)
|+++++... .++..+.+..... ..+. .+..+ ...+..|. .++++|||++.| +...+.++..
T Consensus 509 Ar~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkm-----s~~~Q~aLlE 579 (915)
T PTZ00111 509 LHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKC-----HNESRLSLYE 579 (915)
T ss_pred HHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhC-----CHHHHHHHHH
Confidence 999998652 3444444332211 0000 00000 01122222 379999999988 2222232222
Q ss_pred HHHHHHHhh--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhccccccc-CCCCCHHHHHHHHHHHHh
Q 000978 1023 MKNEFMVNW--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1023 il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eIL~~~l~ 1085 (1203)
++++-...+ .|+...-+.++.||||+|+.. .|++.+++|||.++. ++.|+.+.-..|.++++.
T Consensus 580 aMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 580 VMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred HHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 222111011 133333457899999999842 578999999987654 577888877777776654
No 240
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.8e-06 Score=99.59 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------
Q 000978 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 963 (1203)
Q Consensus 905 Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~--------------------- 963 (1203)
.++.+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.
T Consensus 8 W~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD 74 (319)
T PRK08769 8 WQQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD 74 (319)
T ss_pred cHHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC
Confidence 345666666665542 2334679999999999999999999887321
Q ss_pred EEEEe-cccccccc--ccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc
Q 000978 964 FINIS-MSSITSKW--FGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1036 (1203)
Q Consensus 964 fi~I~-~seL~s~~--~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~ 1036 (1203)
|+.+. .++-.+.- ..-.-..|+.+.+.+... ...|++||++|.| + ....|.||..++.
T Consensus 75 ~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE--- 139 (319)
T PRK08769 75 LQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----N-------RAACNALLKTLEE--- 139 (319)
T ss_pred EEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----C-------HHHHHHHHHHhhC---
Confidence 11121 00000000 000123455555544433 2369999999988 2 2344556665555
Q ss_pred cCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHH
Q 000978 1037 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLK 1111 (1203)
Q Consensus 1037 ~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~ 1111 (1203)
.+.++++|.+|+.++.|-+.+++|+ ..+.|..|+.++..+.|.. .+.. ..+...++..+.|..+..+.
T Consensus 140 -Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~~-~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 -PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGVS-ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred -CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCCC-hHHHHHHHHHcCCCHHHHHH
Confidence 3457788888899999999999999 6788999999877777653 2322 33345667777776555543
No 241
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.55 E-value=4.3e-07 Score=94.97 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000978 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 962 (1203)
Q Consensus 905 Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~---------------------- 962 (1203)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887763 233467999999999999999999998721
Q ss_pred -cEEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 000978 963 -NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1037 (1203)
Q Consensus 963 -~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~ 1037 (1203)
.++.+....-.. .-....++.+...+.. ....|++|||+|.|- ....+.|+..|+..
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 233333222100 0122445555554433 245699999999882 34455566666553
Q ss_pred CCccEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000978 1038 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1038 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
+.++.+|.+|+.++.|-+.+++|+ ..+.|..
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 467899999999999999999998 5566654
No 242
>PRK08116 hypothetical protein; Validated
Probab=98.53 E-value=5.3e-07 Score=101.77 Aligned_cols=68 Identities=25% Similarity=0.476 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc----cHHHHHHHHHHHHhcCCceEEEccchh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE----GEKYVKAVFSLASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~----~e~~I~~lF~~A~k~~PsILfIDEID~ 1006 (1203)
.+++|+|++|+|||+||.+||+++ +.+++.++..+++..+... .......++.... ...+|+|||+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 579999999999999999999987 7889999887765433211 1111122222222 347999999963
No 243
>PRK12377 putative replication protein; Provisional
Probab=98.52 E-value=5.7e-07 Score=100.33 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=67.4
Q ss_pred HHHHhcCcCCCCCCCccccccc----ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000978 883 EKRLLADVIPPSDIGVTFDDIG----ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 883 e~~ll~~ii~~~~~~vt~~dI~----Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~ 958 (1203)
++.+....+++.....+|+++. +...+....+.++.. |.. ...+++|+||||||||+||.|||+
T Consensus 56 ~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 56 EKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred HHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHH
Confidence 3334445566666667787775 333344444444332 111 125899999999999999999999
Q ss_pred Hh---CCcEEEEecccccccccccc--HHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 959 EA---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 959 eL---g~~fi~I~~seL~s~~~G~~--e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
++ +..++.++..+++....... ......++... ....+|+||||...
T Consensus 124 ~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 124 RLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 88 67788888877655322110 00111222222 35689999999754
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.1e-06 Score=102.09 Aligned_cols=133 Identities=16% Similarity=0.203 Sum_probs=91.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEecccccc--------------
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------------------FINISMSSITS-------------- 974 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------------------fi~I~~seL~s-------------- 974 (1203)
+-+..+||+||+|+||+++|+++|+.+.+. ++.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 444789999999999999999999988432 11121110000
Q ss_pred cccc---------ccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCcc
Q 000978 975 KWFG---------EGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1041 (1203)
Q Consensus 975 ~~~G---------~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~ 1041 (1203)
.-.| -.-..++.+...+.. ....|++||++|.|- ....|.||..++. .+.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 0000 011234555444332 234699999999882 3445666666665 3577
Q ss_pred EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHH
Q 000978 1042 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVI 1083 (1203)
Q Consensus 1042 VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~ 1083 (1203)
+++|.+|+.++.|.+.+++|+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 78999999999888888653
No 245
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.51 E-value=1.3e-07 Score=79.39 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=44.4
Q ss_pred EEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEec-CCceEEcCeee
Q 000978 147 FTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIG-SKGLQVNGKNL 199 (1203)
Q Consensus 147 ~tvGr~~-~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s-~nGt~VNg~~~ 199 (1203)
++|||.. .||+.|.++.+|..||+|.....+ .++|+|++ +|||||||++|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~---~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG---RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC---eEEEEECCCCCCeeECCEEC
Confidence 5899999 999999999999999999875432 57999999 89999999875
No 246
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=6.7e-06 Score=96.60 Aligned_cols=236 Identities=23% Similarity=0.296 Sum_probs=144.5
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc--
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS-- 974 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s-- 974 (1203)
.+.|-+.-+..+++++..++.. ...+++.+.|-||||||.+...+...+ ....++++|.++..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5677788888888888765442 233689999999999999988776555 33558888876411
Q ss_pred ----cccc--------cc-HHHHHHHHHHH-Hhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCC
Q 000978 975 ----KWFG--------EG-EKYVKAVFSLA-SKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1039 (1203)
Q Consensus 975 ----~~~G--------~~-e~~I~~lF~~A-~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~ 1039 (1203)
+.++ .. +......|..- ... .+-||++||+|.|+.+. +.++.++ -+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~---------~~vLy~l-Fewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS---------QTVLYTL-FEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc---------cceeeee-hhcccC---Cc
Confidence 1111 11 11111222221 111 35689999999997332 1222222 235554 45
Q ss_pred ccEEEEEecCCCCCCcHHHHh---c---ccccccCCCCCHHHHHHHHHHHHhhCCCCCc--hhHHHHHHHcCCCcHHHHH
Q 000978 1040 ERILVLAATNRPFDLDEAVIR---R---LPRRLMVNLPDAPNRAKILQVILAKEDLSPD--VDFDAIANMTDGYSGSDLK 1111 (1203)
Q Consensus 1040 ~~VlVIaTTN~p~~Ld~aLlr---R---Fd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d--~dl~~LA~~T~G~Sg~DL~ 1111 (1203)
.++++|+.+|..+.-|..+-+ | -+..+.|++++.++..+||+..+........ ..++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655543333 2 2457899999999999999999987665433 346778888888777 666
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccc
Q 000978 1112 NL---CVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1171 (1203)
Q Consensus 1112 ~L---~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~ 1171 (1203)
.+ |+.|. |+.+.+.+.. ..+ +.+.........+|.++++..++..+-.+-
T Consensus 367 kaLdv~R~ai-----EI~E~e~r~~---~~~--~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 367 KALDVCRRAI-----EIAEIEKRKI---LDD--PLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHH-----HHHHHHHhhc---ccc--CCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 54 44333 3333332211 011 111111122226788999999998875443
No 247
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.7e-06 Score=96.13 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=107.7
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000978 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 962 (1203)
Q Consensus 905 Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~---------------------- 962 (1203)
.+....+.|...+.. .+-+..+||+||.|+||+.+|+++|+.+-+
T Consensus 7 Wl~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~H 73 (319)
T PRK06090 7 WLVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNH 73 (319)
T ss_pred cHHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCC
Confidence 456666777666542 344468999999999999999999998722
Q ss_pred -cEEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc
Q 000978 963 -NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1037 (1203)
Q Consensus 963 -~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~ 1037 (1203)
.|+.+.... .++.+ .-..++.+...+.. ....|++||++|.|- ....|.||..++.
T Consensus 74 PD~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 134 (319)
T PRK06090 74 PDLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE---- 134 (319)
T ss_pred CCEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----
Confidence 122232211 00111 12334554444433 235799999999882 3345666666665
Q ss_pred CCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHH
Q 000978 1038 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109 (1203)
Q Consensus 1038 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~D 1109 (1203)
++.++++|.+|+.++.|-|.+++|+ ..+.|+.|+.++..+.+.. .+.. ....+++...|-.+..
T Consensus 135 Pp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~----~~~~---~~~~~l~l~~G~p~~A 198 (319)
T PRK06090 135 PAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG----QGIT---VPAYALKLNMGSPLKT 198 (319)
T ss_pred CCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH----cCCc---hHHHHHHHcCCCHHHH
Confidence 3567899999999999999999999 6889999999888777654 2222 1234556666644433
No 248
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.46 E-value=6.9e-07 Score=107.24 Aligned_cols=133 Identities=21% Similarity=0.345 Sum_probs=78.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHH-------HHHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfI 1001 (1203)
..++|+|++||||+++|+++.... +.+|+.++|..+... ++|..... ....+. ....++|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEE
Confidence 469999999999999999998776 578999999876322 12211000 000112 223589999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
|||+.| +...+..+.+++++-...-.+.......++.+|+||+.. ..+.+.+..|+ ..+.+..|...
T Consensus 240 ~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr 313 (445)
T TIGR02915 240 DEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLR 313 (445)
T ss_pred echhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCch
Confidence 999988 322222222222221100011111122467888888764 34556666677 35667778777
Q ss_pred HHHH
Q 000978 1075 NRAK 1078 (1203)
Q Consensus 1075 eR~e 1078 (1203)
+|.+
T Consensus 314 ~R~~ 317 (445)
T TIGR02915 314 SRDG 317 (445)
T ss_pred hchh
Confidence 7765
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.44 E-value=2.7e-06 Score=98.86 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=46.0
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 969 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~-------~fi~I~~ 969 (1203)
++.|+++.+.++.+++.... . +.....+-++|+||||+|||+||++||+.++. +++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a-------~-g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA-------Q-GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 79999999988887775321 1 11223356899999999999999999999965 7777765
No 250
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.43 E-value=1.8e-06 Score=106.87 Aligned_cols=208 Identities=18% Similarity=0.191 Sum_probs=121.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccccccc--HHHH--------HHHHHHHHhcCCceEEEcc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVIFVDE 1003 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL~s~~~G~~--e~~I--------~~lF~~A~k~~PsILfIDE 1003 (1203)
..||||.|++|+||++++++++..+. .||+.+....-....+|.. +..+ ..++..|. .+||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecC
Confidence 36899999999999999999999984 5888876654444445543 1111 11222222 27999999
Q ss_pred chhhccCCCCCchhHHHHHHHHHHHHhh--cCCcccCCccEEEEEecCCC---CCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1004 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1004 ID~L~~~r~~~~~~~al~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
+..+ .+.....+...+.+-...+ ++.....+.+++||+|-|.. ..|.+.++.||+..+.+..|+..+..+
T Consensus 102 ~n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~ 176 (584)
T PRK13406 102 AERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE 176 (584)
T ss_pred cccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc
Confidence 9877 3333333333333333333 45544556789999985432 458999999999999999887654321
Q ss_pred HHHHHHhhCCCCCchhHHHHHHH--cCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 000978 1079 ILQVILAKEDLSPDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPI---KEILEKEKKERAAAMAEGKPAPALSGCADIR 1153 (1203)
Q Consensus 1079 IL~~~l~~~~l~~d~dl~~LA~~--T~G~Sg~DL~~L~~~Aa~~ai---rel~~~~~~~~~~a~~e~~~~~~~~~~~~~r 1153 (1203)
.... ...+...-.+ .--.+...+..+|..+....+ |..+...+-+++.+..+++ .
T Consensus 177 --------~~~~-~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr-----------~ 236 (584)
T PRK13406 177 --------IPID-ADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGR-----------T 236 (584)
T ss_pred --------cCCC-HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCC-----------C
Confidence 0000 0011111111 011234444444444433222 4334444445555544443 4
Q ss_pred cccHHHHHHHHHHhcccc
Q 000978 1154 PLNMDDFKYAHERVCASV 1171 (1203)
Q Consensus 1154 ~Lt~eDf~~Al~~v~pS~ 1171 (1203)
.|+.+|+.+|+.-+.+.-
T Consensus 237 ~V~~~dv~~Aa~lvL~hR 254 (584)
T PRK13406 237 AVEEEDLALAARLVLAPR 254 (584)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 689999999998775443
No 251
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.42 E-value=3.1e-06 Score=102.81 Aligned_cols=152 Identities=24% Similarity=0.321 Sum_probs=85.0
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-----
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM----- 969 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg----~~fi~I~~----- 969 (1203)
.|.++.|...+++.+.-.+ ....+++|+||||+|||+|++.++..+. -..+.+..
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 5677788776665542111 1225799999999999999999987662 11111110
Q ss_pred -c-----ccccc-------------cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 970 -S-----SITSK-------------WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 970 -s-----eL~s~-------------~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
. .+... .+|.....-...+..|.. .+||||||+.+ +...+..+++.+++-...
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQIH 324 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcEE
Confidence 0 00000 111111111123444444 89999999876 222222222222111111
Q ss_pred hc--CCcccCCccEEEEEecCCCC---------------------CCcHHHHhcccccccCCCCCHH
Q 000978 1031 WD--GLRTKDTERILVLAATNRPF---------------------DLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1031 ld--gl~~~~~~~VlVIaTTN~p~---------------------~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
+. +.......++.+|+|+|... .|...+++||+..+.++.|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 11 11112346799999999752 4777999999999999988654
No 252
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.41 E-value=1.8e-06 Score=96.90 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCeEEEEcchhhhhcCC-----cchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCC
Q 000978 657 CPFILFMKDAEKSIAGN-----SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPD 731 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~-----~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~ 731 (1203)
.+.||||||+|.+..+. .+..+.|-..++...+++++|++.+..+- ++
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~-~~-------------------------- 157 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM-DY-------------------------- 157 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh-HH--------------------------
Confidence 35699999999976432 22334455555666788888877654321 00
Q ss_pred ccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 732 SFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 732 ~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
| ..++.+|..||+..|.++.++.+++.+||+..+..
T Consensus 158 -~----------~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 158 -F----------LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred -H----------HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 1 11567889999989999999999999999976643
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.39 E-value=2.4e-06 Score=95.18 Aligned_cols=108 Identities=22% Similarity=0.310 Sum_probs=66.8
Q ss_pred HhcCcCCCCCCCccccccccc----HHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000978 886 LLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 960 (1203)
Q Consensus 886 ll~~ii~~~~~~vt~~dI~Gl----e~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL- 960 (1203)
+....+++.....+|+++... ..+...+.+++.. +. ....+++|+|+||||||+|+.+||+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 334445555556788877533 2233333333321 11 112489999999999999999999998
Q ss_pred --CCcEEEEeccccccccccc---cHHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 961 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 961 --g~~fi~I~~seL~s~~~G~---~e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
+..++.++..++....... .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887776533221 1111223333332 4689999999865
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.38 E-value=3.1e-06 Score=99.42 Aligned_cols=221 Identities=23% Similarity=0.317 Sum_probs=134.5
Q ss_pred CHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000978 878 TENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957 (1203)
Q Consensus 878 ~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA 957 (1203)
...+|...+...+.| +|.|++++|+.|.-++.+...+.. ..+-..+..-+|+|.|.||+.|+.|.++|.
T Consensus 328 ~~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~~~--~dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 328 AEGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDKSP--GDGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred hcccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCCCC--CCCceeecceeEEecCCCchhHHHHHHHHH
Confidence 344555556555555 789999999999887765332210 011112334569999999999999999998
Q ss_pred HHhCCcEEEEeccccccccccccHHHH-----------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHH
Q 000978 958 TEAGANFINISMSSITSKWFGEGEKYV-----------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1026 (1203)
Q Consensus 958 ~eLg~~fi~I~~seL~s~~~G~~e~~I-----------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~e 1026 (1203)
+..-..+++---.. .-+|-+.... ...+-+|.. +|..|||+|.| .+.+..++..++++
T Consensus 397 rlapRgvYTTGrGS---SGVGLTAAVmkDpvTgEM~LEGGALVLAD~---GICCIDEfDKM-----~e~DRtAIHEVMEQ 465 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGS---SGVGLTAAVMKDPVTGEMVLEGGALVLADG---GICCIDEFDKM-----DESDRTAIHEVMEQ 465 (721)
T ss_pred hcCcccceecCCCC---CccccchhhhcCCCCCeeEeccceEEEccC---ceEeehhhhhh-----hhhhhHHHHHHHHh
Confidence 87744433321100 0111111111 111222333 79999999999 34445566666655
Q ss_pred HHHhh--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhccccccc-CCCCCHHHHHHHHHHHHhh--CC
Q 000978 1027 FMVNW--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILAK--ED 1088 (1203)
Q Consensus 1027 LL~~l--dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eIL~~~l~~--~~ 1088 (1203)
-...+ -|+.+.-+.+.-|+|++|+.+ .|+.++++|||..+. .+.|+.+.-..+.+++.-- +.
T Consensus 466 QTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~ 545 (721)
T KOG0482|consen 466 QTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHE 545 (721)
T ss_pred hhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccC
Confidence 43333 456666678899999999742 688999999997654 4789988888888775421 11
Q ss_pred CCCc-----hhHH------HHHHHcCCCcHHHHHHHHHHHHHH
Q 000978 1089 LSPD-----VDFD------AIANMTDGYSGSDLKNLCVTAAHR 1120 (1203)
Q Consensus 1089 l~~d-----~dl~------~LA~~T~G~Sg~DL~~L~~~Aa~~ 1120 (1203)
-.+. ++.+ .+|+....+.+.+|..-+..|-..
T Consensus 546 ~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~ 588 (721)
T KOG0482|consen 546 EQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVE 588 (721)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 1111 2222 235555667778887776665544
No 255
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.38 E-value=2.3e-06 Score=103.51 Aligned_cols=170 Identities=19% Similarity=0.281 Sum_probs=96.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHHH-------HHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKYV-------KAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~-----~~G~~e~~I-------~~lF~~A~k~~PsILfI 1001 (1203)
..+||.|++||||+++|+++.... +.+|+.++|+.+... .+|...... ...|.. ...+.|||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l 238 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFL 238 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEE
Confidence 469999999999999999998876 579999999876321 122211100 001222 23478999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhccccccc
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1203)
|||+.| +...+ ..|+..++... .....++.||+||+.. ..+.+.+..|| ..+.
T Consensus 239 ~~i~~l-----~~~~q-------~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~ 305 (469)
T PRK10923 239 DEIGDM-----PLDVQ-------TRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL-NVIR 305 (469)
T ss_pred eccccC-----CHHHH-------HHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHh-ccee
Confidence 999988 22222 22333332211 1112457888888753 24667777788 3456
Q ss_pred CCCCCHHHHHH----HHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1068 VNLPDAPNRAK----ILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1068 v~~Pd~eeR~e----IL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+..|...+|.+ +++.++.... ........+++...+..|+...+..+++++.+..
T Consensus 306 i~~PpLreR~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i 364 (469)
T PRK10923 306 VHLPPLRERREDIPRLARHFLQVAA-------RELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 (469)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHH
Confidence 66666666654 4444443210 0000111245566666666666666666654443
No 256
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.7e-06 Score=107.31 Aligned_cols=189 Identities=25% Similarity=0.319 Sum_probs=114.2
Q ss_pred HHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000978 880 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 880 ~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
.++...+...++| .|.|++.+|+.|.-.+...... ....+...+.--+|||.|.||+|||.|.+.+++.
T Consensus 274 ~~i~~~l~~SiaP---------sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~ 342 (682)
T COG1241 274 PDIYDILIKSIAP---------SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKL 342 (682)
T ss_pred CcHHHHHHHHhcc---------cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhh
Confidence 3444445555555 5789999999887666543221 1111222233357999999999999999999988
Q ss_pred hCCcEEEE-ec---ccccccccccc---HHHH-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh
Q 000978 960 AGANFINI-SM---SSITSKWFGEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031 (1203)
Q Consensus 960 Lg~~fi~I-~~---seL~s~~~G~~---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l 1031 (1203)
+-..++.- .. ..|........ +..+ ...+-.| .++|.+|||+|.| +..+..++..++.+-...+
T Consensus 343 aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsI 414 (682)
T COG1241 343 APRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISI 414 (682)
T ss_pred CCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeee
Confidence 84443331 11 11111110000 1000 0111222 3489999999988 4444555555554433333
Q ss_pred c--CCcccCCccEEEEEecCCCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhC
Q 000978 1032 D--GLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1087 (1203)
Q Consensus 1032 d--gl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eIL~~~l~~~ 1087 (1203)
. |+...-+.+.-|+|++|+.. +|++.+++|||.++.+ ..|+.+.-..+.++.+..+
T Consensus 415 aKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 415 AKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred cccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 2 33334457788999999864 5788999999987665 5688877777777776554
No 257
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.36 E-value=1e-06 Score=99.31 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=105.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEeccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMSS 971 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~------fi~I~~se 971 (1203)
-.+.++++.+++...+.++... . .- .++|+|||||+|||....+.|..+-.+ +..++.++
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~----------~--~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGM----------P--GL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred chhhhHhcCCchhhHHHHhccC----------C--CC--CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 4567888888888877776432 1 12 389999999999999999999998543 11222222
Q ss_pred cccccccccHHHHHHHHHHHHh-------cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEE
Q 000978 972 ITSKWFGEGEKYVKAVFSLASK-------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlV 1044 (1203)
=.+ ++- ...--+.|..++. ..+..|++||.|.+ ....+.++++++..+ ..++.+
T Consensus 104 ~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----T~~AQnALRRviek~-----------t~n~rF 164 (360)
T KOG0990|consen 104 DRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----TRDAQNALRRVIEKY-----------TANTRF 164 (360)
T ss_pred ccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHh-----hHHHHHHHHHHHHHh-----------ccceEE
Confidence 111 111 1122234444442 26789999999988 334556666655544 345566
Q ss_pred EEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000978 1045 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1203)
Q Consensus 1045 IaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l 1089 (1203)
+..+|.+..+.+++++|| ..+.|.+.+..+....+.+++..+..
T Consensus 165 ~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh
Confidence 667899999999999999 56788888888888888877765543
No 258
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.36 E-value=9.4e-07 Score=110.43 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCcceeeeC---CeEEEcCCCCcce-----eecCCCCccceEEEEEEecCCceEEEEEEecC-CceEEcCee-----ecC
Q 000978 136 QNSNVPICA---SIFTVGSSRQCNF-----PLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKN-----LKK 201 (1203)
Q Consensus 136 ~~~~l~i~~---~~~tvGr~~~cd~-----~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~-nGt~VNg~~-----~~k 201 (1203)
..+.|.|++ --|+|||..+||+ +|.++.||+.|.+|.+.. + ..||||+.| |||||||+. +..
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~--~--~~~~~Dl~S~nGT~v~~~~~~r~~~~p 620 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKD--G--AFFLMDLRSEHGTYVTDNEGRRYRATP 620 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEEC--C--EEEEEECCCCCccEEeCCCCceEecCC
Confidence 346688844 5599999999997 999999999999999762 2 379999998 999999988 556
Q ss_pred CCeeEccCCCEEEEeecCCeEEEEEec
Q 000978 202 NTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1203)
Q Consensus 202 ~~~~~L~~gDeI~f~~~~~~~yif~~l 228 (1203)
|..+.|++||+|-|+...+-+|--+.+
T Consensus 621 ~~~~~l~~~d~I~~g~~~~~~fr~~~~ 647 (668)
T PLN02927 621 NFPARFRSSDIIEFGSDKKAAFRVKVI 647 (668)
T ss_pred CCceEeCCCCEEEeCCCcceeEEEEee
Confidence 789999999999999877655655544
No 259
>CHL00181 cbbX CbbX; Provisional
Probab=98.35 E-value=3.1e-06 Score=96.53 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCeEEEEcchhhhhcC------CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCC
Q 000978 657 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~------~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~ 730 (1203)
.+-||||||++.+... ..+..+.|...|+...++++||++++..+ +|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-----------------------~~~--- 175 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-----------------------MDK--- 175 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 3469999999987532 23344445555566667899999976432 111
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhh
Q 000978 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 779 (1203)
Q Consensus 731 ~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~ 779 (1203)
| ...+.+|.+||+..|.|+.++.+++.+||+..+.+.
T Consensus 176 --~----------~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 176 --F----------YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred --H----------HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 0 113578999999999999999999999999887663
No 260
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.35 E-value=1.4e-06 Score=92.45 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=65.4
Q ss_pred eeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecC-CceEEcCeeecCCCeeEccCCCEEEEeec
Q 000978 140 VPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSL 218 (1203)
Q Consensus 140 l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~-nGt~VNg~~~~k~~~~~L~~gDeI~f~~~ 218 (1203)
..+....+|+||+..+|++|.+..+|..||.|.+..+. .||+|++| |||||||.++.. .+.|++||.|.|+..
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~ 157 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGT 157 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcceEECCeEccC--cEEcCCCCEEEECcc
Confidence 33444689999999999999999999999999987544 58899986 999999999998 899999999999876
Q ss_pred CC
Q 000978 219 GN 220 (1203)
Q Consensus 219 ~~ 220 (1203)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 54
No 261
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.31 E-value=9.8e-06 Score=99.08 Aligned_cols=195 Identities=19% Similarity=0.274 Sum_probs=111.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~---- 973 (1203)
.+.+|+.-+.+-.+.++.++...+. + ..+.+-+||+||+|||||++++.||+++++.+++...+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~-------~--~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS-------G--SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc-------c--CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4667777777666666666653111 1 12234688999999999999999999999988875432210
Q ss_pred ---ccccccc---H---HH---HHHH-HHHHHh-----------cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 974 ---SKWFGEG---E---KY---VKAV-FSLASK-----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 974 ---s~~~G~~---e---~~---I~~l-F~~A~k-----------~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
..+.+.. . .. ...+ +..++. ..+.||+|+|+-.++... ....+.++..++.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYLR 161 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHHH
Confidence 0111110 1 01 1111 111111 246799999997664221 1333444444432
Q ss_pred hhcCCcccCCc-cEEEEEe-c------CCC--------CCCcHHHHhcc-cccccCCCCCHHHHHHHHHHHHhhC-----
Q 000978 1030 NWDGLRTKDTE-RILVLAA-T------NRP--------FDLDEAVIRRL-PRRLMVNLPDAPNRAKILQVILAKE----- 1087 (1203)
Q Consensus 1030 ~ldgl~~~~~~-~VlVIaT-T------N~p--------~~Ld~aLlrRF-d~~I~v~~Pd~eeR~eIL~~~l~~~----- 1087 (1203)
. ... ++++|.| + |.. ..+++.++... -.+|.|++-...-..+.|+.++..+
T Consensus 162 ---~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~ 234 (519)
T PF03215_consen 162 ---S----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSS 234 (519)
T ss_pred ---c----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhc
Confidence 1 122 6777777 1 111 14567777632 2578899888888888888877765
Q ss_pred ---CCCCch-hHHHHHHHcCCCcHHHHHHH
Q 000978 1088 ---DLSPDV-DFDAIANMTDGYSGSDLKNL 1113 (1203)
Q Consensus 1088 ---~l~~d~-dl~~LA~~T~G~Sg~DL~~L 1113 (1203)
...... .++.|+..+.|.....|.+|
T Consensus 235 ~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 235 GKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred CCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 111222 37788887776555444443
No 262
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.31 E-value=7.4e-06 Score=98.62 Aligned_cols=126 Identities=23% Similarity=0.395 Sum_probs=76.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHHH-------HHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKYV-------KAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~-----~~G~~e~~I-------~~lF~~A~k~~PsILfI 1001 (1203)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|...... ...+..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 469999999999999999998765 579999999876322 222110000 0112222 3479999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCC-------cccCCccEEEEEecCCC-------CCCcHHHHhccccccc
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1067 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl-------~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1067 (1203)
|||+.| +.. +...|+..++.. ......++.||+||+.. ..+.+.+..|+ ..+.
T Consensus 244 d~i~~l-----~~~-------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~ 310 (457)
T PRK11361 244 DEIGEM-----PLV-------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIH 310 (457)
T ss_pred echhhC-----CHH-------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccce
Confidence 999988 222 222233333221 11112457889998863 24555666666 3466
Q ss_pred CCCCCHHHHHH
Q 000978 1068 VNLPDAPNRAK 1078 (1203)
Q Consensus 1068 v~~Pd~eeR~e 1078 (1203)
+..|...+|.+
T Consensus 311 i~~ppLreR~~ 321 (457)
T PRK11361 311 LILPPLRDRRE 321 (457)
T ss_pred ecCCChhhchh
Confidence 77777777755
No 263
>PRK15115 response regulator GlrR; Provisional
Probab=98.28 E-value=6.4e-06 Score=98.90 Aligned_cols=133 Identities=23% Similarity=0.379 Sum_probs=74.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHHHH-------HHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV-------KAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~-----~G~~e~~I-------~~lF~~A~k~~PsILfI 1001 (1203)
..++|+|++||||+++|+++.... +.+|+.++|..+.... +|...... ..++. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 369999999999999999998876 5799999998763221 11110000 00112 223479999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
||||.| +...+..+.++++.-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+..|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999988 222222222222211000001111112367888888853 12334444454 24566778877
Q ss_pred HHHH
Q 000978 1075 NRAK 1078 (1203)
Q Consensus 1075 eR~e 1078 (1203)
+|.+
T Consensus 309 ~R~e 312 (444)
T PRK15115 309 ERTE 312 (444)
T ss_pred hccc
Confidence 7754
No 264
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.28 E-value=5.4e-06 Score=103.40 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=41.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
..|+++.|++++++.|...+.. . +++||+||||+|||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~--------------~--~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ--------------R--RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh--------------C--CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5789999999999988876652 1 3799999999999999999998774
No 265
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=4.1e-06 Score=97.09 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=86.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-ccccHHHH
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 984 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~-------------------------~fi~I~~seL---~s~~-~G~~e~~I 984 (1203)
+-+..+||+||+|+|||++|+++|+.+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44468999999999999999999998732 2333433110 0000 00123445
Q ss_pred HHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh
Q 000978 985 KAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR 1060 (1203)
Q Consensus 985 ~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr 1060 (1203)
+.+.+.+... ...|++||+++.| + ....+.++..++... ..+.+|.+|+.+..+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d-------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----N-------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----C-------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 6666665442 3469999999988 2 223344444454432 235666688888899999999
Q ss_pred cccccccCCCCCHHHHHHHHHH
Q 000978 1061 RLPRRLMVNLPDAPNRAKILQV 1082 (1203)
Q Consensus 1061 RFd~~I~v~~Pd~eeR~eIL~~ 1082 (1203)
|+ ..+.|++|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7889999999888777754
No 266
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.26 E-value=2.2e-05 Score=87.37 Aligned_cols=91 Identities=21% Similarity=0.328 Sum_probs=60.2
Q ss_pred CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC-------------CCCCcHHHHhc
Q 000978 995 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-------------PFDLDEAVIRR 1061 (1203)
Q Consensus 995 ~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1061 (1203)
-|+||||||++.| + -..+.-|-..++.- -.+ +||.++|+ |+.+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D-------iEcFTyL~kalES~----iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D-------IECFTYLHKALESP----IAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h-------hHHHHHHHHHhcCC----CCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4789999999877 1 11222222223221 133 45555554 66788999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcC
Q 000978 1062 LPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1103 (1203)
Q Consensus 1062 Fd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~ 1103 (1203)
+ .+|..-+++.++.++|++...+.+++. .+..+..|+....
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 8 677888889999999999998887776 3444666666543
No 267
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.25 E-value=2.2e-05 Score=87.62 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
|..++-.++.|. .+|.-.+++.++..+||+..+..+.+. .+..++.|......-+-+--.+|+..|...+.++
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----- 412 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----- 412 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----
Confidence 577888999998 677888899999999999999887765 3334555555554445455556667777666554
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
....+..+|++.+.+-+.-.
T Consensus 413 ---------------------k~~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 413 ---------------------KGKVVEVDDIERVYRLFLDE 432 (454)
T ss_pred ---------------------cCceeehhHHHHHHHHHhhh
Confidence 33568889999998876443
No 268
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.24 E-value=4.7e-06 Score=100.49 Aligned_cols=173 Identities=18% Similarity=0.258 Sum_probs=92.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHHH----HHHHHHHHhcCCceEEEccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKYV----KAVFSLASKIAPSVIFVDEV 1004 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~-----~~G~~e~~I----~~lF~~A~k~~PsILfIDEI 1004 (1203)
..+++.|.+||||+++|+++.... +.+|+.++|..+... .+|...... ............+.||||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 469999999999999999998775 579999999876332 122110000 00000011223589999999
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCC
Q 000978 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
+.| +... ...|+..++... .....++.||++|+.. ..+.+.+..|+. .+.+..
T Consensus 238 ~~l-----~~~~-------q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~l 304 (463)
T TIGR01818 238 GDM-----PLDA-------QTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHL 304 (463)
T ss_pred hhC-----CHHH-------HHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecC
Confidence 988 2212 222332232211 1112356788888753 245567777773 345555
Q ss_pred CCHHHH----HHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1071 PDAPNR----AKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1071 Pd~eeR----~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
|...+| ..+++.++..... .......+++...+..|+..-+..+++++.+..
T Consensus 305 PpLr~R~~Di~~l~~~~l~~~~~-------~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~ 360 (463)
T TIGR01818 305 PPLRERREDIPRLARHFLALAAR-------ELDVEPKLLDPEALERLKQLRWPGNVRQLENLC 360 (463)
T ss_pred CCcccchhhHHHHHHHHHHHHHH-------HhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHH
Confidence 555444 4444444432110 000011245555555555555555555544433
No 269
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.2e-07 Score=105.90 Aligned_cols=48 Identities=38% Similarity=0.538 Sum_probs=40.3
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
...|.|+.|++..|..|.-.... + +++||+||||||||+||+.+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG-----------g-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG-----------G-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc-----------C-----CcEEEecCCCCchHHhhhhhcccC
Confidence 45799999999999999876643 2 589999999999999999886554
No 270
>PRK08181 transposase; Validated
Probab=98.22 E-value=3e-06 Score=95.67 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=49.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.+++|+||||||||+||.++++++ |..++.+++.+++..+.... ......++... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999876 78888888877765432111 11122333322 24689999999866
No 271
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.22 E-value=1.1e-05 Score=97.88 Aligned_cols=190 Identities=19% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000978 879 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 879 ~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~ 958 (1203)
..|+...+...+.| +|.+++++|+-|.-.+..-.. ..+.+++..+.--+|||+|.||||||.|.+.+++
T Consensus 416 rpdiy~lLa~SiAP---------sIye~edvKkglLLqLfGGt~--k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~ 484 (804)
T KOG0478|consen 416 RPDIYELLARSIAP---------SIYELEDVKKGLLLQLFGGTR--KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHR 484 (804)
T ss_pred CccHHHHHHHhhch---------hhhcccchhhhHHHHHhcCCc--ccccccccccccceEEEecCCCcCHHHHHHHHHH
Confidence 34555555555554 688999999988766654222 2233333334446799999999999999999998
Q ss_pred HhCCcEEEEe-cccccc--ccccccHHHHHHHHHHH---HhcCCceEEEccchhhccCCCCCchhHHHHHHHHH--HHHh
Q 000978 959 EAGANFINIS-MSSITS--KWFGEGEKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVN 1030 (1203)
Q Consensus 959 eLg~~fi~I~-~seL~s--~~~G~~e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~e--LL~~ 1030 (1203)
.+..-++.=- .+.-++ .++... ...+++.-+. --...+|..|||+|+| +...+..+.+++++ +-..
T Consensus 485 l~pRg~yTSGkGsSavGLTayVtrd-~dtkqlVLesGALVLSD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIA 558 (804)
T KOG0478|consen 485 LLPRGVYTSGKGSSAVGLTAYVTKD-PDTRQLVLESGALVLSDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIA 558 (804)
T ss_pred hCCcceeecCCccchhcceeeEEec-CccceeeeecCcEEEcCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHh
Confidence 8733222200 000000 000000 0000110000 0113479999999999 33333444444432 2222
Q ss_pred hcCCcccCCccEEEEEecCCCC-------------CCcHHHHhccccccc-CCCCCHHHHHHHHHHHHh
Q 000978 1031 WDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eIL~~~l~ 1085 (1203)
.-|+...-+.+.-|||++|+.. .|++.|++||+.++- ++.||...-+.|..++..
T Consensus 559 KAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 559 KAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred hcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 3455555578889999999532 578999999997654 577887766666666554
No 272
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.21 E-value=5e-06 Score=89.52 Aligned_cols=161 Identities=18% Similarity=0.279 Sum_probs=84.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-ccc---------------------ccc-------------ccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SSI---------------------TSK-------------WFG 978 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~---~fi~I~~-seL---------------------~s~-------------~~G 978 (1203)
..++|+||.|+|||+|++.+...+.- ..+.+.. ... ... ...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 57999999999999999999998832 2222221 110 000 001
Q ss_pred ccHHHHHHHHHHHHhcC-CceEEEccchhhc-cCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC----
Q 000978 979 EGEKYVKAVFSLASKIA-PSVIFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---- 1052 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---- 1052 (1203)
.....+..++....+.. ..||+|||++.+. ..... ..++..+...++.... ..++.+|.++....
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHHHHHHHHHHHH------TTEEEEEEESSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHHHHHHHHHHhhccc--cCCceEEEECCchHHHHH
Confidence 12344555666555443 4899999999996 22211 2333334444443222 23343333333211
Q ss_pred --CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCC-C-CCchhHHHHHHHcCCCcH
Q 000978 1053 --DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-L-SPDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1053 --~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~-l-~~d~dl~~LA~~T~G~Sg 1107 (1203)
.-...+..|+.. +.+++.+.++..++++..+.... + .++.+++.+...+.|..+
T Consensus 172 ~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 172 FLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp TT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred hhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 111234456755 89999999999999999876651 1 257778999999988543
No 273
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.20 E-value=1.1e-05 Score=97.26 Aligned_cols=216 Identities=18% Similarity=0.231 Sum_probs=130.5
Q ss_pred HHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000978 879 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 879 ~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~ 958 (1203)
.+++.+.+...+.| .|.|++.+|.-+.-.+.+-...... .+...+.--+|+|+|.||+||+.+.++++.
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~ 400 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCA 400 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhc
Confidence 44556667766665 6889999998887766654332111 121223335699999999999999999998
Q ss_pred HhCCcEEEEec----cccccccccccHH--H-H-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 959 EAGANFINISM----SSITSKWFGEGEK--Y-V-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 959 eLg~~fi~I~~----seL~s~~~G~~e~--~-I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
-+-..++.--- +.|....+...+. + + ...+..| ..+|..|||+|.| +..++.++...+++--..
T Consensus 401 fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----d~~dqvAihEAMEQQtIS 472 (764)
T KOG0480|consen 401 FSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----DVKDQVAIHEAMEQQTIS 472 (764)
T ss_pred cCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEc---cCceEEechhccc-----ChHhHHHHHHHHHhheeh
Confidence 77544443211 1111111111000 0 0 1111222 2379999999999 333455555555443322
Q ss_pred h--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhccccccc-CCCCCHHHHHHHHHHHHhhCCCCCchh
Q 000978 1031 W--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILAKEDLSPDVD 1094 (1203)
Q Consensus 1031 l--dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eIL~~~l~~~~l~~d~d 1094 (1203)
+ -|+...-+.+.-|||++|+.. .++.++++|||..+. ++.|+...-..|-++++..+....+.
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~- 551 (764)
T KOG0480|consen 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA- 551 (764)
T ss_pred heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc-
Confidence 2 233334467788999999752 577899999997644 58899999999999988764432221
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1095 FDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1095 l~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
..+...|+..+++..+..|.
T Consensus 552 ----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 552 ----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ----ccccccccHHHHHHHHHHHH
Confidence 11114577777776666554
No 274
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.16 E-value=6.8e-06 Score=98.00 Aligned_cols=84 Identities=27% Similarity=0.460 Sum_probs=65.2
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHHhhccCCccccccc-ccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCC
Q 000978 383 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 460 (1203)
Q Consensus 383 v~~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~-~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a 460 (1203)
+.+|++|.-.+++ |.+. |+.|..|..|+|-|.+.-...... .+.....+.|||.||+| .++++|||+||+.+++
T Consensus 59 ~~~p~~i~~~L~~--~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 59 LPTPKEIKAHLDQ--YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDV 134 (412)
T ss_pred CCCHHHHHHHHhh--HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCC
Confidence 6777788777777 3444 889999999999887775332111 13444567899999999 9999999999999999
Q ss_pred eEEEeecccc
Q 000978 461 KLLIFDSHSL 470 (1203)
Q Consensus 461 ~ll~~d~~~~ 470 (1203)
+|..+|.+.+
T Consensus 135 pf~~id~~~l 144 (412)
T PRK05342 135 PFAIADATTL 144 (412)
T ss_pred Cceecchhhc
Confidence 9999997544
No 275
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.14 E-value=5e-06 Score=96.44 Aligned_cols=69 Identities=25% Similarity=0.472 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc---cHHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~---~e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.+++|+||+|+|||+||.|||+++ |..++.++..+++..+... ........+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 689999999999999999999988 7888999888775543111 000011112222 24579999999755
No 276
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.13 E-value=4.2e-05 Score=98.42 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
+..|..+.+...++..... ...+.+||.|||| +++++|||+||+.++.++.-++.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~---------~~~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGK---------MKGPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred HHHHHHHHHHHHHHHhhcC---------CCCceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 4556566654444432221 1234699999999 99999999999999999988875
No 277
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.13 E-value=8.5e-06 Score=97.56 Aligned_cols=170 Identities=17% Similarity=0.295 Sum_probs=94.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHHHH----HHHHHHHHhcCCceEEEccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV----KAVFSLASKIAPSVIFVDEV 1004 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~-----~G~~e~~I----~~lF~~A~k~~PsILfIDEI 1004 (1203)
..++++|.+|+||+++|+++.... +.+|+.++|..+.... +|...... ............++||||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei 242 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecc
Confidence 569999999999999999998665 5799999998763221 11110000 00000011224589999999
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCC
Q 000978 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
+.| +...+ ..|+..++... .....++.+|++|+.. ..+.+.+..|+ ..+.+..
T Consensus 243 ~~l-----~~~~q-------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ 309 (441)
T PRK10365 243 GDI-----SPMMQ-------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEV 309 (441)
T ss_pred ccC-----CHHHH-------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecC
Confidence 988 22222 22333332211 1112356778777653 23444555555 3466777
Q ss_pred CCHHHHHH----HHHHHHhhCCCCCchhHHHHHHH----cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1071 PDAPNRAK----ILQVILAKEDLSPDVDFDAIANM----TDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1071 Pd~eeR~e----IL~~~l~~~~l~~d~dl~~LA~~----T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
|...+|.+ +++.++.. ++.. ..+++...+..|+...+...++++.+..+
T Consensus 310 ppLreR~~Di~~l~~~~l~~-----------~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~ 366 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQR-----------FAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 (441)
T ss_pred CChhhcchhHHHHHHHHHHH-----------HHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 77776655 33333332 2221 12456666666666666666666554443
No 278
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.10 E-value=1.7e-05 Score=91.26 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=48.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.++++|+||+|+|||+||.|+|+++ |..+..+.+++++..+.... ...+...+... ....||+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 3689999999999999999999998 78888888887654432110 01122233322 24579999999743
No 279
>PF13173 AAA_14: AAA domain
Probab=98.08 E-value=8.8e-06 Score=81.46 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
+-++|+||.|+|||++++.+++.+. -.++.+++.+.......... +...+.........+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999999886 77888887765332111111 222222222225689999999977
No 280
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.07 E-value=4.1e-06 Score=97.13 Aligned_cols=74 Identities=28% Similarity=0.558 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCCe-eEccCCCEEEEeecCC
Q 000978 144 ASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTS-CELRSGDEVVFGSLGN 220 (1203)
Q Consensus 144 ~~~~tvGr~~~cd~~l~~~~--~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~-~~L~~gDeI~f~~~~~ 220 (1203)
....+|||+..||-.|.|+. ||+-||+|..- +|. .||.|+|+|||+|||..+-.|.. +-|..||+|.++ +
T Consensus 25 ~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i~iG---~ 97 (430)
T COG3456 25 RGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEILIG---R 97 (430)
T ss_pred cCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCceeecccccCCCCCccccccCCEEeec---c
Confidence 35689999999999999876 89999999853 333 69999998889999999999877 999999999873 3
Q ss_pred eEEEEE
Q 000978 221 HAYIFQ 226 (1203)
Q Consensus 221 ~~yif~ 226 (1203)
|||.
T Consensus 98 --y~i~ 101 (430)
T COG3456 98 --YIIR 101 (430)
T ss_pred --EEEE
Confidence 7776
No 281
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.05 E-value=2e-05 Score=78.03 Aligned_cols=98 Identities=15% Similarity=0.306 Sum_probs=59.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecccccc--------------ccc--cccHHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWF--GEGEKYVKAVFSLAS 992 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL--------g~~fi~I~~seL~s--------------~~~--G~~e~~I~~lF~~A~ 992 (1203)
+.++|+||+|+|||++++.++..+ ..+++.++++.... ... .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999988 67888888754320 000 112333344555555
Q ss_pred hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 993 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 993 k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
+....+|+|||+|.|. ...+++.+...++ ..+-.++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-----------~~~~l~~l~~l~~----~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-----------SDEFLEFLRSLLN----ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-----------THHHHHHHHHHTC----SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-----------CHHHHHHHHHHHh----CCCCeEEEEEChh
Confidence 5555699999999874 1344454444444 2234566666553
No 282
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.04 E-value=6.4e-06 Score=83.52 Aligned_cols=57 Identities=30% Similarity=0.602 Sum_probs=42.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..+++.+ ..+.|||+|||.|
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC
Confidence 3599999999999999999998774 466777766532 2344443 6689999999988
No 283
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=4.6e-06 Score=88.69 Aligned_cols=69 Identities=28% Similarity=0.477 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCceEEEccchh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~ 1006 (1203)
..+++|+||+|+|||+||.++++++ |..+..++.++++..+.... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 3689999999999999999999887 88899999888755432211 111222333332 357999999963
No 284
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=2e-05 Score=89.80 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=59.4
Q ss_pred CCeEEEEcchhhhhcC--C----cchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCC
Q 000978 657 CPFILFMKDAEKSIAG--N----SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~--~----~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~ 730 (1203)
.+-||||||++.+... . .+..+.|-..|+...++++||++++... +|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 4479999999986432 1 2223344445555567999999987431 011
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 731 ~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
| ...+.+|.+||+..|.++.++.+++..||+..+.+
T Consensus 175 --~----------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 175 --F----------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred --H----------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1 11578899999999999999999999999987765
No 285
>PRK06526 transposase; Provisional
Probab=97.99 E-value=7.3e-06 Score=91.93 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.+++|+||||||||+||.+|+.++ |..++.+++.+++...... ....+...+.. -..+.+|+|||++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 589999999999999999999876 7777777776654433111 01111222222 134689999999866
No 286
>PRK06921 hypothetical protein; Provisional
Probab=97.99 E-value=1.6e-05 Score=89.71 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~ 1006 (1203)
.+++|+|++|+|||+|+.|||+++ +..++.++..+++....... ......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 579999999999999999999986 56778887766543321110 111111121 12468999999953
No 287
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.98 E-value=3.1e-05 Score=92.24 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=61.4
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHHhhccCCccc--cccc-ccccCCCCceeeeCCCCchHHHHHHHHHHHhHh
Q 000978 383 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDH--AKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 458 (1203)
Q Consensus 383 v~~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~--~~~~-~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~ 458 (1203)
+..|++|.-.++++ .+. |+.|..|.-|+|-|.+.-.. .... .+..-....|||.||+| .++++|||+||+.+
T Consensus 65 ~~~p~~i~~~L~~~--ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l 140 (413)
T TIGR00382 65 LPTPKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARIL 140 (413)
T ss_pred CCCHHHHHHHhcce--ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhc
Confidence 55667777777763 333 99999999999999887432 1111 11233456899999999 99999999999999
Q ss_pred CCeEEEeeccc
Q 000978 459 GAKLLIFDSHS 469 (1203)
Q Consensus 459 ~a~ll~~d~~~ 469 (1203)
++++.++|.+.
T Consensus 141 ~~pf~~~da~~ 151 (413)
T TIGR00382 141 NVPFAIADATT 151 (413)
T ss_pred CCCeEEechhh
Confidence 99998887643
No 288
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=9.1e-06 Score=91.51 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=66.3
Q ss_pred hcccCCccccccccccccccc-hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 000978 381 AGILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1203)
Q Consensus 381 ~~v~~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1203)
..+-.|.+|.--.|+ |-+. |..|.+|-=|+|-|-|.=.+.....+.-=.-.-|||-||.| .+++.||+.||+.++
T Consensus 47 ~~lPtP~eik~~Ld~--YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~Ln 122 (408)
T COG1219 47 SELPTPKEIKAHLDE--YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILN 122 (408)
T ss_pred ccCCChHHHHHHhhh--heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhC
Confidence 356777888877887 5555 99999999999999776433222222333334699999999 899999999999999
Q ss_pred CeEEEeecccc
Q 000978 460 AKLLIFDSHSL 470 (1203)
Q Consensus 460 a~ll~~d~~~~ 470 (1203)
++|-+-|.+.|
T Consensus 123 VPFaiADATtL 133 (408)
T COG1219 123 VPFAIADATTL 133 (408)
T ss_pred CCeeeccccch
Confidence 99999998555
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.95 E-value=2e-05 Score=88.50 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=50.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHH--HHHHHHHHHHhcCCceEEEccchhh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK--YVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~--~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
..+++|+||||+|||+||.||++++ |..++.+..++++...-..... .-..+.... ....+|+||||...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 3689999999999999999999998 7899999998887653322111 111122212 23579999999754
No 290
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.93 E-value=1.8e-05 Score=89.59 Aligned_cols=140 Identities=22% Similarity=0.337 Sum_probs=79.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-c--EEEEeccccccccccccHHHHHHHHHHH----H-------hcCCceEEEc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA-N--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVIFVD 1002 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~-~--fi~I~~seL~s~~~G~~e~~I~~lF~~A----~-------k~~PsILfID 1002 (1203)
+.+||+||+|||||++++.+...+.- . ...++++.. .....+..+.+.. + .....|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 57999999999999999988776632 2 334444332 1122222222111 0 1123599999
Q ss_pred cchhhccCCCCCchhHHHHHHHHHHHHhh---c--CCcccCCccEEEEEecCCC---CCCcHHHHhcccccccCCCCCHH
Q 000978 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNW---D--GLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~eLL~~l---d--gl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
|+..- ..+.-+.+.. .+++.+++..- + .+....-.++.+||+++.. ..+++.++|.| .++.++.|+.+
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~ 183 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSDE 183 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TCC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCChH
Confidence 99844 3323333332 24455544321 1 1111122578889998864 35788899888 68899999999
Q ss_pred HHHHHHHHHHhh
Q 000978 1075 NRAKILQVILAK 1086 (1203)
Q Consensus 1075 eR~eIL~~~l~~ 1086 (1203)
....|+..++..
T Consensus 184 sl~~If~~il~~ 195 (272)
T PF12775_consen 184 SLNTIFSSILQS 195 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 291
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.89 E-value=0.0001 Score=81.73 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=79.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
.+-.++||+|||||.+++++|+.+|.+++.++|++-+. ...+.++|.-+... .+-+++||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46678999999999999999999999999999987543 45677777766664 489999999988 2222
Q ss_pred hHHHHHHHHHHHHhhcCCc---------ccCCccEEEEEecCC----CCCCcHHHHhcccccccCCCCCHHHHHHHHHHH
Q 000978 1017 HEAMRKMKNEFMVNWDGLR---------TKDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVI 1083 (1203)
Q Consensus 1017 ~~al~~il~eLL~~ldgl~---------~~~~~~VlVIaTTN~----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~ 1083 (1203)
-......+..+...+..-. ..-+...-++.|.|. ...|++.++.-| +.+.+..||.....++ +
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei---~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI---L 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH---H
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH---H
Confidence 2222222222222222111 011234455667664 357888888877 7788888887665554 4
Q ss_pred HhhCCC
Q 000978 1084 LAKEDL 1089 (1203)
Q Consensus 1084 l~~~~l 1089 (1203)
+-..++
T Consensus 177 L~s~GF 182 (231)
T PF12774_consen 177 LLSQGF 182 (231)
T ss_dssp HHCCCT
T ss_pred HHHcCc
Confidence 444444
No 292
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.88 E-value=1.2e-06 Score=101.81 Aligned_cols=175 Identities=25% Similarity=0.336 Sum_probs=86.8
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-----cccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS-----SITSKW 976 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s-----eL~s~~ 976 (1203)
.|.|++.+|..+.-.+....... ...+...+..-+|||.|.||+|||.|.+.+++.....+ +.+.. .|....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 57788888776543332211110 00011123345799999999999999998876653333 22221 121111
Q ss_pred cc---ccHHHH-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhc--CCcccCCccEEEEEecCC
Q 000978 977 FG---EGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 977 ~G---~~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ld--gl~~~~~~~VlVIaTTN~ 1050 (1203)
.. ..+..+ ...+-.|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 00 011111 123344444 89999999988 33333333333332111121 222233567889999997
Q ss_pred CC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhC
Q 000978 1051 PF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1087 (1203)
Q Consensus 1051 p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eIL~~~l~~~ 1087 (1203)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4677999999988665 7788887888888777654
No 293
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.88 E-value=6.7e-05 Score=75.98 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=48.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----------------------ccc--cHHHHHHHHHHH
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----------------------FGE--GEKYVKAVFSLA 991 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~----------------------~G~--~e~~I~~lF~~A 991 (1203)
++|+||||+|||+++..++..+ +.+++.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998887 5677777664332110 000 111122334556
Q ss_pred HhcCCceEEEccchhhcc
Q 000978 992 SKIAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L~~ 1009 (1203)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998863
No 294
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00012 Score=83.45 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------EEEEeccccccccccccHHHHHHHHHHHHhc---
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGAN----------------FINISMSSITSKWFGEGEKYVKAVFSLASKI--- 994 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~----------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~--- 994 (1203)
+-+..+||+||.|+||+.+|.++|..+-+. ++.+.... .+.. -.-..++.+...+...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 344689999999999999999999988331 11121110 0000 0123345555444432
Q ss_pred -CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000978 995 -APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 995 -~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~P 1071 (1203)
...|++||++|.|- ....|.|+..++. ++.++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 34699999999882 2344555655555 3567888888999999999999998 56666654
No 295
>PF05729 NACHT: NACHT domain
Probab=97.87 E-value=8.9e-05 Score=75.73 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=73.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecccccccc-ccccH-----------HHHHH-HHHHHHhcC
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW-FGEGE-----------KYVKA-VFSLASKIA 995 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg--------~~-fi~I~~seL~s~~-~G~~e-----------~~I~~-lF~~A~k~~ 995 (1203)
-++|+|+||+|||++++.++..+. .. ++.+.+..+.... ..... ..+.. ....+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 12 2233333321110 00111 11111 122334455
Q ss_pred CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc--ccccCCCCCH
Q 000978 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP--RRLMVNLPDA 1073 (1203)
Q Consensus 996 PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd--~~I~v~~Pd~ 1073 (1203)
..+|+||.+|.+...... .........+..++ .... ..++-+|.|+. +..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~---~~~~---~~~~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLL---PQAL---PPGVKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHh---hhcc---CCCCeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 678999999999542211 01112223333333 2210 12233333333 222222 444333 3578889999
Q ss_pred HHHHHHHHHHHhh
Q 000978 1074 PNRAKILQVILAK 1086 (1203)
Q Consensus 1074 eeR~eIL~~~l~~ 1086 (1203)
+++.++++.++..
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 296
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=3e-05 Score=87.27 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.+++|+||||+|||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 579999999999999999998765 7778788777665332111 011233344332 235689999999865
No 297
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.84 E-value=0.0002 Score=83.21 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=42.3
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEE
Q 000978 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 464 (1203)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~ 464 (1203)
+|++|-.- ++.+..|....-..... ....+.+||+|||| ++++.||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 57776655 77777766555322221 12345799999999 99999999999999876544
No 298
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.84 E-value=5.4e-05 Score=86.40 Aligned_cols=125 Identities=26% Similarity=0.401 Sum_probs=81.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-----cccccccH--HHHHHHHHHHHhcCCceEEEccchhh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGE--KYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~-----s~~~G~~e--~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.+||.|.+||||-.+|++.-... ..||+-++|+.+- +..+|..+ +--..+|+.|.. +-+|+|||..|
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc
Confidence 49999999999999999886655 7899999998762 33444443 223457887776 88999999877
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhcCCccc-------CCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCH
Q 000978 1008 LGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDA 1073 (1203)
Q Consensus 1008 ~~~r~~~~~~~al~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~ 1073 (1203)
. .++...|+..+....-. -..+|.||+||..+ ..+-+.+.-|+ .++.+..|..
T Consensus 306 S------------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpL 372 (511)
T COG3283 306 S------------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPL 372 (511)
T ss_pred C------------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCcc
Confidence 2 22333344444322111 12578999999763 23334444466 4666777776
Q ss_pred HHHHH
Q 000978 1074 PNRAK 1078 (1203)
Q Consensus 1074 eeR~e 1078 (1203)
.+|..
T Consensus 373 Rer~~ 377 (511)
T COG3283 373 RERPQ 377 (511)
T ss_pred ccCcc
Confidence 66543
No 299
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00066 Score=77.62 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE----------------EEeccccccc-cccc--cHHHHHHHHHHHHhc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------------NISMSSITSK-WFGE--GEKYVKAVFSLASKI 994 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi----------------~I~~seL~s~-~~G~--~e~~I~~lF~~A~k~ 994 (1203)
+-+..+||+|| .||+++|+++|..+-+.-. .-+-+++.-- ..|. .-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44468999996 6899999999988732100 0001222100 0011 123455555444332
Q ss_pred ----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000978 995 ----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 995 ----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
...|++||++|.|- ....|.||..++. ++.++++|.+|+.++.+-|.+++|+ ..|.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 34699999999882 2344566666665 3466888888988999999999999 6777855
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHH
Q 000978 1071 PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 1114 (1203)
Q Consensus 1071 Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~ 1114 (1203)
+.+...+++ ...++..+ ....++.. .| ++.....+.
T Consensus 163 -~~~~~~~~L----~~~g~~~~-~a~~la~~-~~-s~~~A~~l~ 198 (290)
T PRK07276 163 -NEAYLIQLL----EQKGLLKT-QAELLAKL-AQ-STSEAEKLA 198 (290)
T ss_pred -cHHHHHHHH----HHcCCChH-HHHHHHHH-CC-CHHHHHHHh
Confidence 444444444 33444322 22334444 34 454444444
No 300
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.74 E-value=0.00087 Score=80.61 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=89.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-------ccccccccccHHH------HHHHHHHHHh----------
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS-------SITSKWFGEGEKY------VKAVFSLASK---------- 993 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s-------eL~s~~~G~~e~~------I~~lF~~A~k---------- 993 (1203)
+-+||+||+||||||.++.|++++|..++...-+ .+-....+....+ .......+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4589999999999999999999999998886522 1111111111111 1112223322
Q ss_pred --cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEe-cCCCCCCcHH------HH--hcc
Q 000978 994 --IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA-TNRPFDLDEA------VI--RRL 1062 (1203)
Q Consensus 994 --~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaT-TN~p~~Ld~a------Ll--rRF 1062 (1203)
..+.+|+|||+-..+... ..+..+.++..+. .. ...++++|.| +..++..++. +. -|.
T Consensus 191 ~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~----s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV----SI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhhh----hHHHHHHHHHHHH----hc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 245699999997765332 2233344444221 11 1133444433 2223333221 11 144
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhCCCC-------CchhHHHHHHHcCCCcHHHHHHHHH
Q 000978 1063 PRRLMVNLPDAPNRAKILQVILAKEDLS-------PDVDFDAIANMTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1063 d~~I~v~~Pd~eeR~eIL~~~l~~~~l~-------~d~dl~~LA~~T~G~Sg~DL~~L~~ 1115 (1203)
..|.|++-...-..+.|+.++..+... ....++.++....| ||+.++.
T Consensus 260 -~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~G----DIRsAIn 314 (634)
T KOG1970|consen 260 -SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGG----DIRSAIN 314 (634)
T ss_pred -ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCc----cHHHHHh
Confidence 467888888888888888887654322 23445566665555 5554443
No 301
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00013 Score=84.99 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=55.6
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
.-.||||||||.+=-.++|+ |-+.++. |.|++||+||-.++
T Consensus 104 r~tiLflDEIHRfnK~QQD~---lLp~vE~--G~iilIGATTENPs---------------------------------- 144 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDA---LLPHVEN--GTIILIGATTENPS---------------------------------- 144 (436)
T ss_pred CceEEEEehhhhcChhhhhh---hhhhhcC--CeEEEEeccCCCCC----------------------------------
Confidence 46899999999965566666 5677766 99999999997764
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
+++..+|.-|- +.|++..=+.++-.+.+++-+
T Consensus 145 -------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 145 -------FELNPALLSRA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred -------eeecHHHhhhh-heeeeecCCHHHHHHHHHHHH
Confidence 23566777776 677777778888888888633
No 302
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.73 E-value=0.00047 Score=77.73 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=74.6
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc---
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS--- 974 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s--- 974 (1203)
+.|+.-+++.+-..+...+.. ....+ |--+=|||++||||.+.++.||+.+ .-++|..-.+.+--
T Consensus 84 lfGQHla~~~Vv~alk~~~~n------~~p~K-PLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWAN------PNPRK-PLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcC------CCCCC-CeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 445655665555555432222 22223 3567799999999999999999887 22333211111100
Q ss_pred cccc-ccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 975 KWFG-EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 975 ~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
+.+. -.++.-.++-..++..+.+|+++||+|.| . ..+-.++.-|+..-......+..+.++|.-+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----p----~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----P----PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----C----HhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 0000 01223344556667778899999999988 2 2333444444443223333445677888877753
No 303
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.72 E-value=0.00066 Score=76.41 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=84.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--Cc-EEEEecccc----------ccc---c------ccccHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATE--AG--AN-FINISMSSI----------TSK---W------FGEGEKYVKAVFSL 990 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~e--Lg--~~-fi~I~~seL----------~s~---~------~G~~e~~I~~lF~~ 990 (1203)
..+-|.|+|++|+|||+||+.+++. .. +. ++.++...- ... . ....+.....+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4467999999999999999999987 32 22 233333221 000 0 01112333334333
Q ss_pred HHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000978 991 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 991 A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
-+..+.+|+||+++.. . .+..+...+.. ...+.-||.||..... -..+... ...+.+..
T Consensus 98 -L~~~~~LlVlDdv~~~----------~----~~~~l~~~~~~----~~~~~kilvTTR~~~v-~~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 -LKDKRCLLVLDDVWDE----------E----DLEELREPLPS----FSSGSKILVTTRDRSV-AGSLGGT-DKVIELEP 156 (287)
T ss_dssp -HCCTSEEEEEEEE-SH----------H----HH-------HC----HHSS-EEEEEESCGGG-GTTHHSC-EEEEECSS
T ss_pred -hccccceeeeeeeccc----------c----ccccccccccc----cccccccccccccccc-ccccccc-cccccccc
Confidence 3345899999999854 1 12222221111 1223455667765321 1111111 35788999
Q ss_pred CCHHHHHHHHHHHHhhCC----CCCchhHHHHHHHcCCCcHHHHHHHH
Q 000978 1071 PDAPNRAKILQVILAKED----LSPDVDFDAIANMTDGYSGSDLKNLC 1114 (1203)
Q Consensus 1071 Pd~eeR~eIL~~~l~~~~----l~~d~dl~~LA~~T~G~Sg~DL~~L~ 1114 (1203)
.+.++-.++|........ ...+.....|++.+.| .|-.|..+.
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999999999999875443 1123346789999887 555565543
No 304
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00084 Score=77.20 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=90.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEeccccccccccccHHHHHHHHHHHHh-----cCCce
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSV 998 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~-------------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k-----~~PsI 998 (1203)
+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +..+ .-..++.+.+.... ....|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCceE
Confidence 57899999999999999999998722 12333210 0101 11234444333321 25579
Q ss_pred EEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 999 LfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
++||++|.+- ....+.|+..++.. +..+++|.+|+.+..+-+.+++|+ .++.|.+++.++..+
T Consensus 94 vII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 94 LIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHH
Confidence 9999999772 22345566666653 456777777778889999999999 678999999888777
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHcCC
Q 000978 1079 ILQVILAKEDLSPDVDFDAIANMTDG 1104 (1203)
Q Consensus 1079 IL~~~l~~~~l~~d~dl~~LA~~T~G 1104 (1203)
.+... +.. +.....+|..+.|
T Consensus 157 ~l~~~----~~~-~~~a~~~a~~~~~ 177 (299)
T PRK07132 157 KLLSK----NKE-KEYNWFYAYIFSN 177 (299)
T ss_pred HHHHc----CCC-hhHHHHHHHHcCC
Confidence 66542 222 2333445555554
No 305
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.68 E-value=0.00032 Score=80.16 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=41.0
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+|++|=.. ++.+..|..+.-.....+ ...+.+||+|||| +++++||+++|++++.++..++
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~~----------~~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMRQ----------EALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 34444333 777777766553322221 2345699999999 9999999999999987655443
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00052 Score=71.33 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..|+++|+||+|||+++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999887
No 307
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.63 E-value=0.00012 Score=88.13 Aligned_cols=164 Identities=23% Similarity=0.329 Sum_probs=95.0
Q ss_pred HHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 881 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 881 e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.+..++++.+.| .|.|++.+|..+.-.+.+-...-.. .+...+.--+|||+|.|||||+.+.+.+++..
T Consensus 438 ~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~--~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 438 PIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPG--GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred cHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCC--CCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 345557777766 5789999999988777653322110 00111222469999999999999999999887
Q ss_pred CCcEEEE---------eccc----cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHH
Q 000978 961 GANFINI---------SMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1027 (1203)
Q Consensus 961 g~~fi~I---------~~se----L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eL 1027 (1203)
...++.- .+.. +...|.-+ ...+-+|.+ +|.+|||+|.|- ..+...+...+++-
T Consensus 507 ~RAV~tTGqGASavGLTa~v~KdPvtrEWTLE-----aGALVLADk---GvClIDEFDKMn-----dqDRtSIHEAMEQQ 573 (854)
T KOG0477|consen 507 PRAVFTTGQGASAVGLTAYVRKDPVTREWTLE-----AGALVLADK---GVCLIDEFDKMN-----DQDRTSIHEAMEQQ 573 (854)
T ss_pred cceeEeccCCccccceeEEEeeCCccceeeec-----cCeEEEccC---ceEEeehhhhhc-----ccccchHHHHHHhc
Confidence 5444432 1111 11122111 112334444 899999999993 22222222222221
Q ss_pred HHhh--cCCcccCCccEEEEEecCCC-----------C--CCcHHHHhcccccccC
Q 000978 1028 MVNW--DGLRTKDTERILVLAATNRP-----------F--DLDEAVIRRLPRRLMV 1068 (1203)
Q Consensus 1028 L~~l--dgl~~~~~~~VlVIaTTN~p-----------~--~Ld~aLlrRFd~~I~v 1068 (1203)
-..+ .|+...-..+..||||+|+. + +|.+.+++||+....|
T Consensus 574 SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 574 SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 1111 12333334678999999972 1 5668899999865444
No 308
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.60 E-value=0.0001 Score=90.08 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=74.5
Q ss_pred eeC-CeEEEcCCCCcceeecCCCCccceEEEEEEe-------cCCceEEEEEEecC-CceEEcCeeecCCCeeEccCCCE
Q 000978 142 ICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDE 212 (1203)
Q Consensus 142 i~~-~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~-------~~~~~~~~led~s~-nGt~VNg~~~~k~~~~~L~~gDe 212 (1203)
+.+ ..|+|||-..||+.+-.++||+.||-|..-. ..+..-.||.|+++ -|||+|..++.+.+-+.++-|+.
T Consensus 173 l~~~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v 252 (793)
T KOG1881|consen 173 LKGAAACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHV 252 (793)
T ss_pred cccceeEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHHHH
Confidence 555 7799999999999999999999999888732 22334578999988 88999999999999999999999
Q ss_pred EEEeecCCeEEEEEec
Q 000978 213 VVFGSLGNHAYIFQQL 228 (1203)
Q Consensus 213 I~f~~~~~~~yif~~l 228 (1203)
+-|+...+ +||||.-
T Consensus 253 ~~fggsTr-l~i~Qgp 267 (793)
T KOG1881|consen 253 ARFGGSTR-LYIFQGP 267 (793)
T ss_pred HHhcCceE-EEEeeCC
Confidence 99998877 9999964
No 309
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00081 Score=75.46 Aligned_cols=121 Identities=7% Similarity=0.048 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------EEEecccccccc-cc--ccHHHHHHHHHHHH----
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKW-FG--EGEKYVKAVFSLAS---- 992 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~f--------------i~I~~seL~s~~-~G--~~e~~I~~lF~~A~---- 992 (1203)
.++..+||+||.|+||..+|.++|+.+-+.- -.-.-+++.--. .+ -....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3557899999999999999999998872210 000011211100 00 11223334333222
Q ss_pred h-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000978 993 K-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 993 k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~P 1071 (1203)
. ....|++|+++|.|- ....+.||..++. ++.++++|.+|+.++.+-+.+++|+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 1 235799999999882 3445666666665 3577899999999999999999998 44666555
No 310
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.50 E-value=0.00019 Score=87.68 Aligned_cols=140 Identities=28% Similarity=0.411 Sum_probs=85.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccc-----cccccccHHHHH--------HHHHHHHhcCCceEEEc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEKYVK--------AVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL--g~~fi~I~~seL~-----s~~~G~~e~~I~--------~lF~~A~k~~PsILfID 1002 (1203)
.+||.|.|||||-.||++|-... ..||+.++|..+- +.++|..+.... ..++.|. -..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccHHH
Confidence 59999999999999999997665 6799999997652 234443332222 1222222 2699999
Q ss_pred cchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHH
Q 000978 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPN 1075 (1203)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~v~~Pd~ee 1075 (1203)
||..| +...+..+.+++++-...--|... ....|-||++|++.- .+.+.+--|+ ..+.+.+|...+
T Consensus 415 eIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~ 487 (606)
T COG3284 415 EIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRE 487 (606)
T ss_pred Hhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhc
Confidence 99988 444555566666654333333332 456789999998731 2222222244 234566777666
Q ss_pred HHH---HHHHHHhhC
Q 000978 1076 RAK---ILQVILAKE 1087 (1203)
Q Consensus 1076 R~e---IL~~~l~~~ 1087 (1203)
|.. .|..++.+.
T Consensus 488 R~d~~~~l~~~~~~~ 502 (606)
T COG3284 488 RSDRIPLLDRILKRE 502 (606)
T ss_pred ccccHHHHHHHHHHc
Confidence 654 444444443
No 311
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.50 E-value=0.00037 Score=82.58 Aligned_cols=172 Identities=23% Similarity=0.315 Sum_probs=99.1
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----ccccccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 977 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~----~seL~s~~~ 977 (1203)
.|.|.+++|+.+.-++..--+. .+-.+--.+.--+|||.|.|||.|+.|.+.+-+-.-..+++-- .+.|.....
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK--~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK--RLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc--cCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 5789999999998887653221 1111111222356999999999999999998776644444311 111111111
Q ss_pred ccc---HHHH-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHH--HHHhhcCCcccCCccEEEEEecCCC
Q 000978 978 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 978 G~~---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~e--LL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
..+ +-++ .....+|. .+|+.|||+|.| .+.+..+....+++ +-..-.|+.+.-+.+.-|+|++|.+
T Consensus 410 RD~~tReFylEGGAMVLAD---gGVvCIDEFDKM-----re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLAD---GGVVCIDEFDKM-----REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred ecCCcceEEEecceEEEec---CCEEEeehhhcc-----CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 110 0000 01112232 379999999999 33334444444333 2233456666677889999999975
Q ss_pred C-------------CCcHHHHhcccccccCCCC-CHHHHHHHHHHH
Q 000978 1052 F-------------DLDEAVIRRLPRRLMVNLP-DAPNRAKILQVI 1083 (1203)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~I~v~~P-d~eeR~eIL~~~ 1083 (1203)
. ++-+.+++|||.++.+..- +.+.-..|.++.
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHh
Confidence 2 2347999999988877543 333333444443
No 312
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0011 Score=80.70 Aligned_cols=88 Identities=10% Similarity=0.181 Sum_probs=61.6
Q ss_pred HHHHHHHHhhh-ccCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 000978 643 INTLFEVVFSE-SRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1203)
Q Consensus 643 i~~L~ev~~~~-~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~ 721 (1203)
++.+.+.+... .....-||||||+|.+- .+..+.|-..|+..++.+++|++++.+..
T Consensus 102 iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt---~~a~~~LLk~LE~p~~~vv~Ilattn~~k------------------- 159 (472)
T PRK14962 102 IRKIRDAVGYRPMEGKYKVYIIDEVHMLT---KEAFNALLKTLEEPPSHVVFVLATTNLEK------------------- 159 (472)
T ss_pred HHHHHHHHhhChhcCCeEEEEEEChHHhH---HHHHHHHHHHHHhCCCcEEEEEEeCChHh-------------------
Confidence 44444444321 11234599999999863 23455677788888899999999885431
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 722 ~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+.++|..|+ ..+++..++.++...+++....
T Consensus 160 ------------------------l~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 160 ------------------------VPPTIISRC-QVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred ------------------------hhHHHhcCc-EEEEECCccHHHHHHHHHHHHH
Confidence 466777888 7899999999988888876553
No 313
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.45 E-value=0.0027 Score=70.60 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHHH----hcCCCcEEEEeeeccCCCccccCCCCCccccccC
Q 000978 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRL----EKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1203)
Q Consensus 643 i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L----~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~g 718 (1203)
|..|++++.. +....|||+||.. +......|..||+.| +.-|.||+|..+.|+-.=++|.
T Consensus 94 l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~------------ 157 (249)
T PF05673_consen 94 LPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES------------ 157 (249)
T ss_pred HHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh------------
Confidence 5566666664 3689999999976 888889999999999 4557899999999987533333
Q ss_pred CchhhhccccCCCccc--cccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 719 SNQTALLDLAFPDSFG--RLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 719 r~~~~l~d~al~~~~~--r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+.|. -+ ...-...+..+--=.|.-||+-.+.+..|+.+.-++|.+..++
T Consensus 158 -----~~d~-----~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 158 -----FSDR-----EDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred -----hhhc-----cCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 1110 00 0000223333334468899999999999999999999986553
No 314
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.43 E-value=0.00034 Score=83.91 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=109.0
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 972 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~f---------i~I~~seL 972 (1203)
.|.|++.+|+.+.-++.+-... .+.++...+.--+|||.|.|-+.|+.|.|++.+.....+ +-+..+-.
T Consensus 302 SI~GH~~vKkAillLLlGGvEk--~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee--ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 5789999999998877653321 222333334445799999999999999999987663221 11111111
Q ss_pred ccccccccHHHH-HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh--cCCcccCCccEEEEEecC
Q 000978 973 TSKWFGEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 973 ~s~~~G~~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l--dgl~~~~~~~VlVIaTTN 1049 (1203)
...- ..|+.+ ....-+|.+ +|++|||+|.| +..+..++..++++--+.+ -|+...-+.+.-|||++|
T Consensus 380 tD~e--TGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQE--TGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccc--cchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111 122222 123334445 89999999999 4555666666666544444 455666678999999999
Q ss_pred CCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHh
Q 000978 1050 RPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILA 1085 (1203)
Q Consensus 1050 ~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eIL~~~l~ 1085 (1203)
+.+ .|++.+++||+..+.+ ..-+.+.-..|-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 753 5788999999976554 44555555555555443
No 315
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.43 E-value=0.00039 Score=81.91 Aligned_cols=102 Identities=21% Similarity=0.366 Sum_probs=58.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccccc-------cccccHHHHHHHHHHHHhcCCceEEEccc
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVIFVDEV 1004 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~-~fi~I~~seL~s~-------~~G~~e~~I~~lF~~A~k~~PsILfIDEI 1004 (1203)
..+++|++|+|++|+|||+|.-.+...+.. .-.++....++.. +.+.. .-+..+-....+ ...||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 346799999999999999999999888743 1112221122111 11111 112222222212 2349999999
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
+.- +..+--.+.+++..+. ...+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 733 3333344455555553 2568999999974
No 316
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.41 E-value=0.00033 Score=68.25 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg 961 (1203)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 317
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.37 E-value=0.00026 Score=90.77 Aligned_cols=160 Identities=22% Similarity=0.271 Sum_probs=104.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc-------cHHHHHHHH---HH--HHhcCCceEEEccchh
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE-------GEKYVKAVF---SL--ASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~-------~e~~I~~lF---~~--A~k~~PsILfIDEID~ 1006 (1203)
+|++||||.|||+.+.++|.++|+.++.++.++..++.... ....+...| .. .......||++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 69999999999999999999999999999998765443211 111222222 00 0111223999999998
Q ss_pred hccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000978 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1007 L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
+++ .+ +..+.++...... ..+-||+++|.........+.|....++|..|+.+.+..-+..++..
T Consensus 440 ~~~-~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-ED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hh--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 11 2233333333321 33467788887776666555554466999999999999888888776
Q ss_pred CCCC-CchhHHHHHHHcCCCcHHHHHHHHHHH
Q 000978 1087 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1087 ~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~A 1117 (1203)
+.+. .+..++++...+ ++||++.+..-
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~l 532 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQL 532 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHH
Confidence 6544 445567777766 45666554433
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.37 E-value=0.00026 Score=77.64 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=26.2
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
-+||+|||| +++++||+.+|++++++|-.+.
T Consensus 52 h~lf~GPPG--~GKTTLA~IIA~e~~~~~~~~s 82 (233)
T PF05496_consen 52 HMLFYGPPG--LGKTTLARIIANELGVNFKITS 82 (233)
T ss_dssp EEEEESSTT--SSHHHHHHHHHHHCT--EEEEE
T ss_pred eEEEECCCc--cchhHHHHHHHhccCCCeEecc
Confidence 589999999 9999999999999999986543
No 319
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.37 E-value=0.00085 Score=76.68 Aligned_cols=161 Identities=19% Similarity=0.329 Sum_probs=92.5
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HH--HhCCcEEEEeccccc-----
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-AT--EAGANFINISMSSIT----- 973 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArAL-A~--eLg~~fi~I~~seL~----- 973 (1203)
.+.|+.+-.+.+.+++..... ..-.++|++.||.|+|||+|.... +. +.|-+|+.+.....+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 345777777777766653111 122368999999999999975544 33 556666655443221
Q ss_pred ----------------cccccccHHHHHHHHHHHHhc-----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhc
Q 000978 974 ----------------SKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1203)
Q Consensus 974 ----------------s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ld 1032 (1203)
.+.+|.....+..+.....+. .+.|.++||||.+++.. + +.++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------r---QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------R---QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------h---hHHHHHHH
Confidence 122333333333333332221 12345568999775321 1 22232222
Q ss_pred CCcccCCccEEEEEecCCCCC---CcHHHHhccccc-ccC-CCCCHHHHHHHHHHHH
Q 000978 1033 GLRTKDTERILVLAATNRPFD---LDEAVIRRLPRR-LMV-NLPDAPNRAKILQVIL 1084 (1203)
Q Consensus 1033 gl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~~-I~v-~~Pd~eeR~eIL~~~l 1084 (1203)
.+......++.||+.|.+.+. |...+.+||..+ |++ +.....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 222234578999999988754 446778899765 544 4456788888888877
No 320
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.36 E-value=0.0017 Score=78.03 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
.+..||||||||.+-. ...+.|-+.|+. |.+++||+||....
T Consensus 91 g~~~vL~IDEi~~l~~---~~q~~LL~~le~--~~iilI~att~n~~--------------------------------- 132 (413)
T PRK13342 91 GRRTILFIDEIHRFNK---AQQDALLPHVED--GTITLIGATTENPS--------------------------------- 132 (413)
T ss_pred CCceEEEEechhhhCH---HHHHHHHHHhhc--CcEEEEEeCCCChh---------------------------------
Confidence 4678999999998543 223445566654 89999999885431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
..++.+|..|+ ..+.+..++.++...+++..+..
T Consensus 133 --------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 133 --------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred --------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 11456777788 78999999999998888866543
No 321
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.34 E-value=0.00083 Score=72.56 Aligned_cols=74 Identities=22% Similarity=0.412 Sum_probs=49.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccc-----------------------ccHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG-----------------------EGEKYVKAVFS 989 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G-----------------------~~e~~I~~lF~ 989 (1203)
..-++|+||||+|||+++..++... +..+++++..++....+. +....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3569999999999999999988654 677888888652100000 00112344444
Q ss_pred HHHhcCCceEEEccchhhcc
Q 000978 990 LASKIAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 990 ~A~k~~PsILfIDEID~L~~ 1009 (1203)
.+....+.+|+||-|..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 45555789999999998863
No 322
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.33 E-value=0.001 Score=80.75 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=55.7
Q ss_pred CeEEEEcchhhhhcC---CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000978 658 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~---~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~ 734 (1203)
+-+|+||||+.+.+. ..++++.|....+. |..+||+++..+.. +.
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~------------------------------l~ 259 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKE------------------------------LP 259 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHH------------------------------HH
Confidence 459999999986542 34677777666654 56677777664421 11
Q ss_pred cccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhhh
Q 000978 735 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 735 r~~~~~~~~~~~d~~l~rrFp--~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++.|.-||. ..++|..|+.+.|..|++...+.
T Consensus 260 ----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 260 ----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 14566777885 47999999999999999976643
No 323
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.33 E-value=0.00074 Score=87.79 Aligned_cols=134 Identities=25% Similarity=0.326 Sum_probs=86.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc--cccccc-------HHH-HHHHHHHHHhcCCceEEEccchh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEG-------EKY-VKAVFSLASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s--~~~G~~-------e~~-I~~lF~~A~k~~PsILfIDEID~ 1006 (1203)
+++||.|.||+|||.|+.|+|+..|-.+++++.++-.. ..+|.. +-. ...-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 35999999999999999999999999999999875311 122221 111 1122333333 346889999973
Q ss_pred hccCCCCCchhHHHHHHHHHHHHhhcCC----------cccCCccEEEEEecCCC------CCCcHHHHhcccccccCCC
Q 000978 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDTERILVLAATNRP------FDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1007 L~~~r~~~~~~~al~~il~eLL~~ldgl----------~~~~~~~VlVIaTTN~p------~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
- ...++..|-..+|-- .-....++.|+||-|+. ..|+..+++|| .++++..
T Consensus 1623 a------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 A------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred h------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 3 223333333333321 11124678899998864 47999999999 5667776
Q ss_pred CCHHHHHHHHHHHH
Q 000978 1071 PDAPNRAKILQVIL 1084 (1203)
Q Consensus 1071 Pd~eeR~eIL~~~l 1084 (1203)
.+.++...|...+.
T Consensus 1690 lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1690 LTTDDITHIANKMY 1703 (4600)
T ss_pred cccchHHHHHHhhC
Confidence 66666666665543
No 324
>PHA00729 NTP-binding motif containing protein
Probab=97.32 E-value=0.00047 Score=75.97 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANF 964 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~f 964 (1203)
.+|+|+|+||||||+||.+||++++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 325
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.31 E-value=0.0006 Score=75.03 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc--cccc--------cccccHHHHHHHHHHHH--hcCCceEE
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLAS--KIAPSVIF 1000 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se--L~s~--------~~G~~e~~I~~lF~~A~--k~~PsILf 1000 (1203)
.+-+..+||||+||+|||++|+.++.. .-++..+... +.+. -...+-..+...+..+. ...+.+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 333356999999999999999999731 2233333321 0000 00011112222223222 24578999
Q ss_pred Eccchhhcc
Q 000978 1001 VDEVDSMLG 1009 (1203)
Q Consensus 1001 IDEID~L~~ 1009 (1203)
||.|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998863
No 326
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.006 Score=67.88 Aligned_cols=174 Identities=19% Similarity=0.215 Sum_probs=100.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc---------cccccccc--------HHHHHHHHHHHHhc-CC
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI---------TSKWFGEG--------EKYVKAVFSLASKI-AP 996 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~seL---------~s~~~G~~--------e~~I~~lF~~A~k~-~P 996 (1203)
-+.++|+-|+|||++.|++...++ ...+.++...+ +......+ +..-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999997776663 22334443322 11111111 11122333333333 45
Q ss_pred ceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc-H---HHHhcccccccCCCCC
Q 000978 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD-E---AVIRRLPRRLMVNLPD 1072 (1203)
Q Consensus 997 sILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld-~---aLlrRFd~~I~v~~Pd 1072 (1203)
-++++||.+.+. ...-+.++.+.+- -... ...-.+++|+-..-...+- + ++..|++.+|++++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~nl----~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTNL----EEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHhh----cccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 2222333322221 1111 1123355555432211111 1 3334887778899999
Q ss_pred HHHHHHHHHHHHhhCCC----CCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 000978 1073 APNRAKILQVILAKEDL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 1123 (1203)
Q Consensus 1073 ~eeR~eIL~~~l~~~~l----~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~air 1123 (1203)
.++-..+++..++..+. ..+..+..++..+.| .+.-|.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 99999999999876543 345557788888888 566788887777655443
No 327
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.30 E-value=0.0012 Score=69.63 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc-----------------------cH-----
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE-----------------------GE----- 981 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~------~~G~-----------------------~e----- 981 (1203)
+|++||||+|||+|+..++.+. |.+++.++..+-... .+|- .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 667777765321100 0000 00
Q ss_pred HHHHHHHHHHHhcCCceEEEccchhhcc
Q 000978 982 KYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 982 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 1009 (1203)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124445555667899999999998753
No 328
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.0094 Score=71.99 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se 971 (1203)
++..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45789999999999999999999877 56666666543
No 329
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.28 E-value=0.0003 Score=78.36 Aligned_cols=67 Identities=28% Similarity=0.559 Sum_probs=47.7
Q ss_pred eEEEEcCCCChHHHHHHHHH------HHhCCcEEEEeccccccc-----cccccHHHHHHHHHHH--------HhcCCce
Q 000978 938 GILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLA--------SKIAPSV 998 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA------~eLg~~fi~I~~seL~s~-----~~G~~e~~I~~lF~~A--------~k~~PsI 998 (1203)
.+||.||+|.||+.||+.|- +.+..+|+.++|..+.+. .+|+. +..|.-| +....++
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv----kgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV----KGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh----ccccccchhhhhhhhccCCCce
Confidence 49999999999999999884 445789999999987442 33332 2222222 2223479
Q ss_pred EEEccchhhc
Q 000978 999 IFVDEVDSML 1008 (1203)
Q Consensus 999 LfIDEID~L~ 1008 (1203)
||+|||..|.
T Consensus 286 lfldeigelg 295 (531)
T COG4650 286 LFLDEIGELG 295 (531)
T ss_pred EehHhhhhcC
Confidence 9999999883
No 330
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.23 E-value=0.0022 Score=72.40 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
+++.|||.|||| .++++||++||+.+|.+++.+..+
T Consensus 20 ~g~~vLL~G~~G--tGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 20 SGYPVHLRGPAG--TGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred cCCeEEEEcCCC--CCHHHHHHHHHHHhCCCEEEEeCC
Confidence 456899999999 999999999999999999998754
No 331
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.22 E-value=0.0046 Score=83.35 Aligned_cols=172 Identities=16% Similarity=0.268 Sum_probs=93.8
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEeccccc--
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSIT-- 973 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~f---i~I~~seL~-- 973 (1203)
.+++++|++...+.+..++... ....+-|-|+|++|+||||||+++++.+...| +.++...+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4667899999988888877531 12235699999999999999999988874332 112110000
Q ss_pred cccccc------------cHHHHHH-------------HHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHH
Q 000978 974 SKWFGE------------GEKYVKA-------------VFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1028 (1203)
Q Consensus 974 s~~~G~------------~e~~I~~-------------lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL 1028 (1203)
....+. ....+.. .....-+.++.+|+||+++.. ..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 000000 0001111 111122335678999998732 1222222
Q ss_pred HhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhH----HHHHHHc
Q 000978 1029 VNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDF----DAIANMT 1102 (1203)
Q Consensus 1029 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl----~~LA~~T 1102 (1203)
...+.. ...-.||.||.. ..+++ ..+.++.+..|+.++..++|..++-+.... ..++ .++++.+
T Consensus 316 ~~~~~~----~~GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF----GSGSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRA 385 (1153)
T ss_pred hhCccC----CCCcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHh
Confidence 211211 112234445653 33433 356788899999999999998876443322 2222 3456666
Q ss_pred CCCc
Q 000978 1103 DGYS 1106 (1203)
Q Consensus 1103 ~G~S 1106 (1203)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6643
No 332
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.19 E-value=0.0025 Score=76.20 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=53.1
Q ss_pred CeEEEEcchhhhhcC---CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000978 658 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~---~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~ 734 (1203)
+-+|+|||++.+.+. +.++++.|....+. +..+||+++..+.. +.
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~------------------------------l~ 247 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQIVLTSDRPPKE------------------------------LP 247 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCCHHH------------------------------Hh
Confidence 348999999976542 24567777666544 56677776654431 11
Q ss_pred cccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhhh
Q 000978 735 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 735 r~~~~~~~~~~~d~~l~rrFp--~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++.|..||. ..++|.+|+.++|..|++..+..
T Consensus 248 ----------~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 248 ----------GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ----------hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 13455666775 47999999999999999976544
No 333
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.18 E-value=0.0037 Score=71.88 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
.+-||+|||+|.+ +..+..+.|+..|+..++++.+|.+++..+
T Consensus 100 ~~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~----------------------------------- 142 (316)
T PHA02544 100 GGKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITANNKN----------------------------------- 142 (316)
T ss_pred CCeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEcCChh-----------------------------------
Confidence 3568999999975 223355677777888888888888877442
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
++.++|..|| ..+.++.|+.+++..+++..+.+
T Consensus 143 --------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 143 --------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred --------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 1467788889 68999999999999988865443
No 334
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.18 E-value=0.00033 Score=68.60 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
|+|.|+||+||||+|+.||+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7999999999999999999999988876654
No 335
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.0008 Score=72.96 Aligned_cols=104 Identities=23% Similarity=0.262 Sum_probs=79.6
Q ss_pred CCCCccCCCcchh--hcccCCCCc--ceeeeC-CeEEEcCCC-CcceeecCCCCccceEEEEE--E--ecCC-----ceE
Q 000978 117 QNPTFETSTPWCR--LLSQSGQNS--NVPICA-SIFTVGSSR-QCNFPLKDQAISAVLCKIKH--V--QSEG-----SAV 181 (1203)
Q Consensus 117 ~~~~~~~~~pWgr--L~s~~~~~~--~l~i~~-~~~tvGr~~-~cd~~l~~~~~s~~~c~i~~--~--~~~~-----~~~ 181 (1203)
.+-.++++.||-| ||+-....+ .+-|.. +.|.+||.. --||-++.++-|+-||-|.- + ++.+ .+-
T Consensus 161 y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvk 240 (293)
T KOG1882|consen 161 YNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVK 240 (293)
T ss_pred ecCCchhcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeee
Confidence 5677888899875 787654443 444444 889999954 45677777888999998754 2 2222 447
Q ss_pred EEEEEecC-CceEEcCeeecCCCeeEccCCCEEEEeecCC
Q 000978 182 AMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSLGN 220 (1203)
Q Consensus 182 ~~led~s~-nGt~VNg~~~~k~~~~~L~~gDeI~f~~~~~ 220 (1203)
.||-|+++ ||||+|.++|..-.-..|..+|.|-|+....
T Consensus 241 pYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~r 280 (293)
T KOG1882|consen 241 PYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFGFSSR 280 (293)
T ss_pred eEEEecCCCCcceecCcccCchheeeeecCceeeeccchH
Confidence 89999987 9999999999999999999999999985543
No 336
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.15 E-value=0.0086 Score=70.13 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHH--HhcCC-CcEEEEeeeccCCCccccCCCCCccccccC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR--LEKLP-DKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~--L~~l~-g~V~vIGst~~~d~~~~~~~~~~~~l~~~g 718 (1203)
.++.+++.+.. ...++||+|||+|.++....++...|... ....+ .+|.+|+.+|..+..
T Consensus 116 ~~~~l~~~l~~--~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~--------------- 178 (365)
T TIGR02928 116 VFRRLYKELNE--RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFR--------------- 178 (365)
T ss_pred HHHHHHHHHHh--cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchH---------------
Confidence 45666666543 35789999999999875444432222222 12233 689999999876520
Q ss_pred CchhhhccccCCCccccccccCCCchHHHHHHhhhC-CCeEEEeCCCHHHHHHHHHHhhh
Q 000978 719 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 719 r~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrF-p~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
.+ ++..+..+| +..|.+++++.++...|++..++
T Consensus 179 ---------------~~----------l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 179 ---------------EN----------LDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ---------------hh----------cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 01 344455556 46799999999999999997664
No 337
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.12 E-value=0.00016 Score=76.42 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA---GANF 964 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL---g~~f 964 (1203)
+|+|+|+||+|||||++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999999888 5553
No 338
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.06 E-value=0.0033 Score=74.49 Aligned_cols=98 Identities=22% Similarity=0.409 Sum_probs=61.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc--------cHHHHHHHHHHHHhcCCc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 997 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~------~~G~--------~e~~I~~lF~~A~k~~Ps 997 (1203)
+..-+||+|+||+|||+|+..+|..+ +.++++++..+-... .+|. .+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33569999999999999999998765 457777776432111 0110 122345566666777899
Q ss_pred eEEEccchhhccCCC--CCchhHHHHHHHHHHHHhhc
Q 000978 998 VIFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWD 1032 (1203)
Q Consensus 998 ILfIDEID~L~~~r~--~~~~~~al~~il~eLL~~ld 1032 (1203)
+|+||+|..++.... .++.....+.++..|....+
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999998864332 12223334555555544433
No 339
>PRK04195 replication factor C large subunit; Provisional
Probab=97.01 E-value=0.0092 Score=73.12 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 000978 401 SENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1203)
Q Consensus 401 se~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1203)
.+..+..|.+.+--+.+. ...+.+||+|||| +++++||+|||++++..++.++.++
T Consensus 19 ~~~~~~~l~~~l~~~~~g-----------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 19 NEKAKEQLREWIESWLKG-----------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CHHHHHHHHHHHHHHhcC-----------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 377777777665433311 1157899999999 9999999999999998887777644
No 340
>PRK08118 topology modulation protein; Reviewed
Probab=97.00 E-value=0.0014 Score=69.09 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
..|+++||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 341
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.99 E-value=0.0049 Score=74.78 Aligned_cols=97 Identities=25% Similarity=0.416 Sum_probs=62.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------ccc--------cHHHHHHHHHHHHhcCCc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIAPS 997 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~------~G~--------~e~~I~~lF~~A~k~~Ps 997 (1203)
+..-+||+|+||+|||+|+..+|... +..+++++..+-.... +|. .+..+..++....+..|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33568999999999999999998765 6788888865432111 111 112345566666777899
Q ss_pred eEEEccchhhccCCCC--CchhHHHHHHHHHHHHhh
Q 000978 998 VIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNW 1031 (1203)
Q Consensus 998 ILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~l 1031 (1203)
+|+||.|..++..... .+.....+.++..|....
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 9999999988643211 222333455555554443
No 342
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.99 E-value=0.0017 Score=84.57 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=89.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccccHHHH---HHHHHHHHhcCCceEEEccchhhc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKYV---KAVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se------L~s~~~G~~e~~I---~~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
.+||.||+.+|||.++..+|.+.|..|++++-.+ +++.|+....+.+ ..++..|.+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 4999999999999999999999999999998643 3333333322211 22344444433 46889999733
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhcCCc---c-------cCCccEEEEEecCCCC------CCcHHHHhcccccccCCCCC
Q 000978 1009 GRRENPGEHEAMRKMKNEFMVNWDGLR---T-------KDTERILVLAATNRPF------DLDEAVIRRLPRRLMVNLPD 1072 (1203)
Q Consensus 1009 ~~r~~~~~~~al~~il~eLL~~ldgl~---~-------~~~~~VlVIaTTN~p~------~Ld~aLlrRFd~~I~v~~Pd 1072 (1203)
. ..++..|-.++|.-+ . .+..+++++||-|+|. .|..++++|| ..++|..-.
T Consensus 968 ----p-------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddip 1035 (4600)
T COG5271 968 ----P-------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIP 1035 (4600)
T ss_pred ----c-------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCc
Confidence 1 223333333333211 1 1346788899999874 5788999999 678888777
Q ss_pred HHHHHHHHHHHHh
Q 000978 1073 APNRAKILQVILA 1085 (1203)
Q Consensus 1073 ~eeR~eIL~~~l~ 1085 (1203)
.++...||+..++
T Consensus 1036 edEle~ILh~rc~ 1048 (4600)
T COG5271 1036 EDELEEILHGRCE 1048 (4600)
T ss_pred HHHHHHHHhccCc
Confidence 8888888877553
No 343
>PF14516 AAA_35: AAA-like domain
Probab=96.99 E-value=0.012 Score=68.88 Aligned_cols=173 Identities=15% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHH-----------------------------
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK----------------------------- 982 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~----------------------------- 982 (1203)
|..-+.|+||..+|||+|...+.+.+ |...+.+++..+-...+...+.
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44579999999999999998887666 7888888886642211111111
Q ss_pred --HHHHHHHH---HHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc--cCCccEEEEEecCCCCCCc
Q 000978 983 --YVKAVFSL---ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT--KDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 983 --~I~~lF~~---A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~--~~~~~VlVIaTTN~p~~Ld 1055 (1203)
.+...|+. ..-..|-||+|||||.++.... ....++. ++..|-.... ....++.+|.+......+.
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~-~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFG-LLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHH-HHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 11222322 1123577999999999974321 1112221 1222211110 1112333333332221121
Q ss_pred HHH-Hh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1056 EAV-IR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1056 ~aL-lr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
... .+ .+...|.++.-+.++...+++.+-. .. ....++.|-..+.|.. .=+..+|...+
T Consensus 183 ~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~--~~-~~~~~~~l~~~tgGhP-~Lv~~~~~~l~ 244 (331)
T PF14516_consen 183 LDINQSPFNIGQPIELPDFTPEEVQELAQRYGL--EF-SQEQLEQLMDWTGGHP-YLVQKACYLLV 244 (331)
T ss_pred cCCCCCCcccccceeCCCCCHHHHHHHHHhhhc--cC-CHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 111 11 2334567777888888888777632 22 2334888888998854 34444444443
No 344
>PRK07261 topology modulation protein; Provisional
Probab=96.97 E-value=0.0017 Score=68.57 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
.|+|+|+||+||||||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 589999999999999999999999998887653
No 345
>PHA02624 large T antigen; Provisional
Probab=96.93 E-value=0.0032 Score=77.63 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=66.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCC--CC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE--NP 1014 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~--~~ 1014 (1203)
+.+||+||||||||+++++|++.++..++.++++.-.+ -|.+.-...-.+.+||++-.-.-... .+
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhhhhhceEEEeeeccccccccccCCc
Confidence 57999999999999999999999977777787654211 12221112225788888742211000 00
Q ss_pred chhHHHHHHHHHHHHhhcCC-ccc----CCcc-----EEEEEecCCCCCCcHHHHhcccccccCCC
Q 000978 1015 GEHEAMRKMKNEFMVNWDGL-RTK----DTER-----ILVLAATNRPFDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1015 ~~~~al~~il~eLL~~ldgl-~~~----~~~~-----VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
+ ..+.. +.-|-..+||- ... -..+ --+|.|||. ..|+..+.-||..++.|..
T Consensus 500 G--~~~dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 G--QGMNN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred c--cccch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0 00000 01122334443 100 0000 123556664 6788888889988888854
No 346
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.015 Score=75.40 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
..-=|+||||+|.+ +.+..|.|-+.|+..+..+++|..++..+.
T Consensus 119 ~~~KV~IIDEad~l---t~~a~NaLLK~LEEpP~~~~fIl~tt~~~k--------------------------------- 162 (824)
T PRK07764 119 SRYKIFIIDEAHMV---TPQGFNALLKIVEEPPEHLKFIFATTEPDK--------------------------------- 162 (824)
T ss_pred CCceEEEEechhhc---CHHHHHHHHHHHhCCCCCeEEEEEeCChhh---------------------------------
Confidence 34459999999985 357788899999999999999998876541
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.+.|..|. +.|+|..+..+...+.++..+.+
T Consensus 163 ----------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 163 ----------VIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred ----------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 455677777 79999999888887777765543
No 347
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.92 E-value=0.0011 Score=78.88 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=62.8
Q ss_pred CCccccccccccccccc-hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 000978 385 DGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1203)
Q Consensus 385 ~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1203)
+|++|.-.++.| ++. ++.|.+|.-|+|.|.+...+..-.+. ...+++|||.||+| +++++||||||+.++++++
T Consensus 2 tP~~I~~~Ld~~--IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 2 TPREIVAELDKY--IIGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFI 76 (441)
T ss_pred CHHHHHHHHhhh--ccCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEE
Confidence 344555555553 444 89999999999999776554322222 22347899999999 9999999999999999999
Q ss_pred Eeeccccc
Q 000978 464 IFDSHSLL 471 (1203)
Q Consensus 464 ~~d~~~~~ 471 (1203)
-+|++.+.
T Consensus 77 ~vdat~~~ 84 (441)
T TIGR00390 77 KVEATKFT 84 (441)
T ss_pred Eeecceee
Confidence 99998884
No 348
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.89 E-value=0.0092 Score=73.36 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=57.6
Q ss_pred CeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 000978 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~ 737 (1203)
.-|++|||+|.+ +....+.|...|+..+..+++|.+|+..+
T Consensus 129 ~KVvIIDEa~~L---s~~a~naLLk~LEepp~~~vfI~aTte~~------------------------------------ 169 (507)
T PRK06645 129 HKIFIIDEVHML---SKGAFNALLKTLEEPPPHIIFIFATTEVQ------------------------------------ 169 (507)
T ss_pred cEEEEEEChhhc---CHHHHHHHHHHHhhcCCCEEEEEEeCChH------------------------------------
Confidence 458999999975 23556777888888888999998887543
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 738 ~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
++.+.|..|. ..|++..++.++....++..+++
T Consensus 170 -------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 170 -------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred -------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 1566777778 78999999999999888877654
No 349
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.89 E-value=0.0013 Score=70.87 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=56.7
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccccc----cHH-------------HHHHHHHHHHhcCCc
Q 000978 939 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 997 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArAL-A~eL---g~~fi~I~~seL~s~~~G~----~e~-------------~I~~lF~~A~k~~Ps 997 (1203)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..+.. ... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999977555 4333 666555 544331111111 000 001111111111468
Q ss_pred eEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCC
Q 000978 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 998 ILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~ 1069 (1203)
||+|||+..+++.+.... ......+ .++...+ ...+-||.+|..+..+|..+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998776521 1112333 2332222 3456778889999999999988666555543
No 350
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.85 E-value=0.0011 Score=68.88 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
+..|+|+|+||+|||++|++||+.++++++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 358999999999999999999999999888644
No 351
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.85 E-value=0.016 Score=75.92 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=83.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---c-------c-----c---------------ccHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W-------F-----G---------------EGEKYVKA 986 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~---~-------~-----G---------------~~e~~I~~ 986 (1203)
+-++|+||+|.|||+++...+...+ ++..++...-... + + + .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4599999999999999999887776 6666655321000 0 0 0 00112223
Q ss_pred HHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 000978 987 VFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1065 (1203)
Q Consensus 987 lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~ 1065 (1203)
++..... ..|.+|+|||++.+- + ......+..|+. .. +.++.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~---~~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLR---HQ----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHH---hC----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333332 568899999999661 1 122333444432 22 223344335543222321111111223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcH
Q 000978 1066 LMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1066 I~v~----~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg 1107 (1203)
+.+. ..+.++-.+++...+.. . ....+...|.+.|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-P-IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHhCChHH
Confidence 4444 66888888888765432 1 245567888889988653
No 352
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.85 E-value=0.013 Score=75.58 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
..+.|+|.|||| ++++.|+|++|+.++-++.-++
T Consensus 348 ~g~~i~l~GppG--~GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 348 KGPILCLVGPPG--VGKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred CCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEE
Confidence 345799999999 9999999999999999988777
No 353
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.84 E-value=0.0084 Score=72.67 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCeEEEEcchhhhhcC---CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 000978 657 CPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 733 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~---~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~ 733 (1203)
++-+|+|||++.+.+. +.++++.+....+. |..+||++...+.. +
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~------------------------------l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQK------------------------------L 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHH------------------------------H
Confidence 5669999999987653 34677777666654 56677766543321 1
Q ss_pred ccccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhh
Q 000978 734 GRLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 734 ~r~~~~~~~~~~~d~~l~rrFp--~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
. .+.+.|..||. ..+.|.+|+.|.|..|+++..+
T Consensus 242 ~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 242 S----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred H----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 1 14455666663 4778999999999999986654
No 354
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.83 E-value=0.0015 Score=79.99 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.3
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 969 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-g~~fi~I~~ 969 (1203)
-|.|+.|++++++.+.+++..... ++.....-++|.||||+|||+||++||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 377899999999999887742111 112233579999999999999999999988 567776644
No 355
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0058 Score=78.44 Aligned_cols=139 Identities=23% Similarity=0.336 Sum_probs=97.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc--cccccccHHHHHHHHHHHHhc-CCceEEEcc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDE 1003 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDE 1003 (1203)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+..++... ..-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 567999999999999999999876 3456667766543 356678889999999988844 556888999
Q ss_pred chhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC-----CCCCcHHHHhcccccccCCCCCHHHHHH
Q 000978 1004 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAK 1078 (1203)
Q Consensus 1004 ID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1078 (1203)
++.+.+...+.+.- ...+-|--.+ .++.+.+|+||.. ...-+|++-+||+ .+.++.|+.++...
T Consensus 289 lh~lvg~g~~~~~~----d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYGAI----DAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcchHH----HHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 99988766542211 2222221111 1234888887753 2355789999994 56789999888777
Q ss_pred HHHHHHhh
Q 000978 1079 ILQVILAK 1086 (1203)
Q Consensus 1079 IL~~~l~~ 1086 (1203)
||+.+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 88776554
No 356
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.82 E-value=0.0086 Score=66.38 Aligned_cols=74 Identities=26% Similarity=0.377 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc-------------------------cc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-------------------------EG 980 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~------~~G-------------------------~~ 980 (1203)
+..-++|.|+||+|||+++..++..+ |..+++++..+-... .+| ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 33569999999999999986665444 566666664321000 000 01
Q ss_pred HHHHHHHHHHHHhcCCceEEEccchhhc
Q 000978 981 EKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 981 e~~I~~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
+..+..+...+....|.+++||++-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344455555555678999999998775
No 357
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.77 E-value=0.005 Score=69.73 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=61.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSIT 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~-~seL~ 973 (1203)
.++++++-.+...+.|++++.. +...++|.||+|+|||++++++...+. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577777777777777666542 223599999999999999999987773 3355542 22221
Q ss_pred cc-----ccc-ccHHHHHHHHHHHHhcCCceEEEccch
Q 000978 974 SK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 974 s~-----~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10 111 111234566777788899999999995
No 358
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.76 E-value=0.007 Score=70.28 Aligned_cols=76 Identities=26% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------------ccccccHHHHHHHHHHHHhcC
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 995 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s----------------~~~G~~e~~I~~lF~~A~k~~ 995 (1203)
+..-++|+||||+|||+||..++.+. +..++.++...... ......+..+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33568999999999999988776554 67777777643211 111122344444444555667
Q ss_pred CceEEEccchhhccC
Q 000978 996 PSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 996 PsILfIDEID~L~~~ 1010 (1203)
+.+|+||-+..|...
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998754
No 359
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.75 E-value=0.0059 Score=66.86 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+..-++|+|+||+|||++|..+|.+. +..+++++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33568999999999999999998755 7788888876
No 360
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.72 E-value=0.0056 Score=78.18 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=52.9
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
...||||||||.+-... -+.|-+.++. |.|++||+||....
T Consensus 109 ~~~IL~IDEIh~Ln~~q---QdaLL~~lE~--g~IiLI~aTTenp~---------------------------------- 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ---QDALLPWVEN--GTITLIGATTENPY---------------------------------- 149 (725)
T ss_pred CceEEEEeChhhCCHHH---HHHHHHHhcC--ceEEEEEecCCChH----------------------------------
Confidence 46799999999854322 2334455654 89999999986431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++.+|..|. ..|.++.++.++...+|+..+..
T Consensus 150 -------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 150 -------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred -------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHH
Confidence 12455566565 67899999999999999877653
No 361
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.72 E-value=0.0029 Score=68.34 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=43.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-ccccc---------ccccccHHHHHHHHHHHHhcCCceEEEcc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGA----NFINISM-SSITS---------KWFGEGEKYVKAVFSLASKIAPSVIFVDE 1003 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~----~fi~I~~-seL~s---------~~~G~~e~~I~~lF~~A~k~~PsILfIDE 1003 (1203)
-++|.||+|+|||+++++++..+.. .++.+.. .++.. ..+|.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999888742 2333321 12110 01122222345556667777899999999
Q ss_pred ch
Q 000978 1004 VD 1005 (1203)
Q Consensus 1004 ID 1005 (1203)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 362
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.68 E-value=0.003 Score=63.52 Aligned_cols=32 Identities=53% Similarity=0.863 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
|+++||||+|||++|+.++..++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 799999999999999999999994 44554444
No 363
>PRK14974 cell division protein FtsY; Provisional
Probab=96.62 E-value=0.019 Score=67.27 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+.-++|.|++|+||||++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999988888776 5556555543
No 364
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.014 Score=62.80 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec--c--c----ccccccccc-H----HHHHHHHHHH--HhcCCceE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVI 999 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~--s--e----L~s~~~G~~-e----~~I~~lF~~A--~k~~PsIL 999 (1203)
-+|++||+|+|||+++..++..+ +..++.+.. . . +.+. .|.. + .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37899999999999998888776 555555533 1 1 1111 1110 0 1122333332 23456899
Q ss_pred EEccchhh
Q 000978 1000 FVDEVDSM 1007 (1203)
Q Consensus 1000 fIDEID~L 1007 (1203)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 365
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.62 E-value=0.0092 Score=69.38 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=50.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccccHHHHHHHHHHHHhcCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 997 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL----------------~s~~~G~~e~~I~~lF~~A~k~~Ps 997 (1203)
+-++|+||||+|||+||..++.+. +..++.++...- .-......+..+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999999999999887544 777888876431 1001112233344444445566789
Q ss_pred eEEEccchhhccC
Q 000978 998 VIFVDEVDSMLGR 1010 (1203)
Q Consensus 998 ILfIDEID~L~~~ 1010 (1203)
+|+||-+-.+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999999753
No 366
>PRK13695 putative NTPase; Provisional
Probab=96.61 E-value=0.0085 Score=63.12 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988775
No 367
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.012 Score=64.50 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEec-cccccccccccHH-------------HHHHHHHHHHhc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGEGEK-------------YVKAVFSLASKI 994 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL--g------~~fi~I~~-seL~s~~~G~~e~-------------~I~~lF~~A~k~ 994 (1203)
.+.||.||||+|||+|.+-||+-+ | ..+.-++- +++.+-..|.+.- .-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999877 2 22334443 3343333333211 123355667888
Q ss_pred CCceEEEccchhh
Q 000978 995 APSVIFVDEVDSM 1007 (1203)
Q Consensus 995 ~PsILfIDEID~L 1007 (1203)
.|.||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 368
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.028 Score=72.40 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=35.1
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCC
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 701 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d 701 (1203)
.--|++|||+|.+ +.+..+.|-+.|+.-++++++|++||...
T Consensus 119 k~KViIIDEAh~L---T~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 119 RFKVYLIDEVHML---SRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 4469999999986 56677888889999999999999988654
No 369
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.033 Score=65.90 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=55.2
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
..-|++|||+|.+- .+..+.|-..|+..++++.+|.+++..+.
T Consensus 119 ~~kviIIDEa~~l~---~~a~naLLk~lEe~~~~~~fIl~t~~~~~---------------------------------- 161 (363)
T PRK14961 119 RFKVYLIDEVHMLS---RHSFNALLKTLEEPPQHIKFILATTDVEK---------------------------------- 161 (363)
T ss_pred CceEEEEEChhhcC---HHHHHHHHHHHhcCCCCeEEEEEcCChHh----------------------------------
Confidence 34599999999852 33455677778888888888887764431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.+.|..|+ ..+++.+|+.++...+++..+++
T Consensus 162 ---------l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 162 ---------IPKTILSRC-LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred ---------hhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 455677777 79999999999988888865543
No 370
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.56 E-value=0.0083 Score=60.50 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.+.|+.-+.+.+...+...+.. ....+| --+-|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~------~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN------PNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC------CCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567777776666666543322 122333 457799999999999999999986
No 371
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.55 E-value=0.031 Score=66.28 Aligned_cols=93 Identities=19% Similarity=0.292 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhh-c-CCcchhhhHHHHHhcCCC-cEEEEeeeccCCCccccCCCCCccccccC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSI-A-GNSDSYSTFKSRLEKLPD-KVIVIGSHTHTDNRKEKSHPGGLLFTKFG 718 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l-~-~~~~~~~~lk~~L~~l~g-~V~vIGst~~~d~~~~~~~~~~~~l~~~g 718 (1203)
+++.+.+.+.+ +..++||+|||+|.+. . +...++..+ ..+..+.+ +|.+||..+..+-
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~-~~~~~~~~~~v~vI~i~~~~~~---------------- 185 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLL-RAHEEYPGARIGVIGISSDLTF---------------- 185 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHH-HhhhccCCCeEEEEEEECCcch----------------
Confidence 56666666654 3568999999999987 2 233344433 34444455 7888888875541
Q ss_pred CchhhhccccCCCccccccccCCCchHHHHHHhhhC-CCeEEEeCCCHHHHHHHHHHhhh
Q 000978 719 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 719 r~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrF-p~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
.+ + .+..+..+| +..|.+++++.++...||+..++
T Consensus 186 ------~~--------~----------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 186 ------LY--------I----------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred ------hh--------h----------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 00 0 123333334 46788999999999999986663
No 372
>PRK13947 shikimate kinase; Provisional
Probab=96.55 E-value=0.0021 Score=67.00 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
+|+|.|+||+|||++|+.||+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 373
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.041 Score=65.95 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 971 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~se 971 (1203)
.-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 468999999999999999998754 44555555443
No 374
>PRK03839 putative kinase; Provisional
Probab=96.51 E-value=0.0022 Score=67.82 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.|+|.|+||+||||+++.||+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987754
No 375
>PHA02774 E1; Provisional
Probab=96.49 E-value=0.017 Score=71.18 Aligned_cols=130 Identities=15% Similarity=0.295 Sum_probs=71.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG 1015 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~-I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~ 1015 (1203)
+.++|+||||||||++|.+|++.++..++. ++... .+ . +..+. .-.|++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F------w----Lqpl~--d~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF------W----LQPLA--DAKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc------c----cchhc--cCCEEEEecCcch--------
Confidence 579999999999999999999999655544 54321 11 0 11111 1269999998210
Q ss_pred hhHHHHHHHHHHHHhhcCCccc----C-----CccEEEEEecCCCCCCcH---HHHhcc-----cccccCC-------CC
Q 000978 1016 EHEAMRKMKNEFMVNWDGLRTK----D-----TERILVLAATNRPFDLDE---AVIRRL-----PRRLMVN-------LP 1071 (1203)
Q Consensus 1016 ~~~al~~il~eLL~~ldgl~~~----~-----~~~VlVIaTTN~p~~Ld~---aLlrRF-----d~~I~v~-------~P 1071 (1203)
-...+. ..|-..++|-... . -..--+|.|||..-.-++ .|.+|+ ...+.+. ..
T Consensus 492 ~w~y~d---~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~P~d~~G~P~f~l 568 (613)
T PHA02774 492 CWDYID---TYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPFPLDENGNPVFEL 568 (613)
T ss_pred HHHHHH---HHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCCCcCCCCCEeeee
Confidence 001111 1233334543100 0 012345668885333333 344454 2223222 23
Q ss_pred CHHHHHHHHHHHHhhCCCCCc
Q 000978 1072 DAPNRAKILQVILAKEDLSPD 1092 (1203)
Q Consensus 1072 d~eeR~eIL~~~l~~~~l~~d 1092 (1203)
+...-+.+|+.+.....+.+.
T Consensus 569 td~~WKsFF~rlw~~LdL~d~ 589 (613)
T PHA02774 569 TDANWKSFFERLWSQLDLSDQ 589 (613)
T ss_pred CchhHHHHHHHHHHHcCCCCc
Confidence 567778888888888777643
No 376
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.49 E-value=0.018 Score=62.79 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
.-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 559999999999999999998765 5677777654
No 377
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.48 E-value=0.0072 Score=65.32 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=50.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----ccccccHHHHHHHHHHHH---------hcCCceEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----KWFGEGEKYVKAVFSLAS---------KIAPSVIF 1000 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s----~~~G~~e~~I~~lF~~A~---------k~~PsILf 1000 (1203)
+-++|.||||||||++++.++..+ +..++.+.+..-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358889999999999999987666 66777666532100 000000011111111110 12347999
Q ss_pred EccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
|||+..+- ...+..++..... .+.++++++-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99998762 2334444444333 2467888887764
No 378
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.46 E-value=0.012 Score=73.24 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=52.3
Q ss_pred CeEEEEcchhhhhcC---CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000978 658 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~---~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~ 734 (1203)
.-+|+||||+.+.+. +.+++++|....++ |.-+||.|...+.. +.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~e------------------------------L~ 425 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQ------------------------------LV 425 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHh------------------------------hh
Confidence 458999999976552 35677777766654 44455555443321 11
Q ss_pred cccccCCCchHHHHHHhhhC--CCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 735 RLHDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 735 r~~~~~~~~~~~d~~l~rrF--p~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++.|..|| .-.+.|..|+.|.|+.||+.....
T Consensus 426 ----------~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 426 ----------TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ----------hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1355677778 456689999999999999966543
No 379
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.44 E-value=0.0059 Score=69.38 Aligned_cols=69 Identities=28% Similarity=0.392 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cccccccc-------ccc------cHHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKW-------FGE------GEKYVKAVFSLAS 992 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~----------~fi~I~-~seL~s~~-------~G~------~e~~I~~lF~~A~ 992 (1203)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+ +|. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222221 11221110 010 0111234566677
Q ss_pred hcCCceEEEccch
Q 000978 993 KIAPSVIFVDEVD 1005 (1203)
Q Consensus 993 k~~PsILfIDEID 1005 (1203)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 380
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.024 Score=70.93 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
.+--|++|||+|.+ +....|.|-+.|+.-++++++|..||..+.
T Consensus 123 gr~KViIIDEah~L---s~~AaNALLKTLEEPP~~v~FILaTtep~k--------------------------------- 166 (700)
T PRK12323 123 GRFKVYMIDEVHML---TNHAFNAMLKTLEEPPEHVKFILATTDPQK--------------------------------- 166 (700)
T ss_pred CCceEEEEEChHhc---CHHHHHHHHHhhccCCCCceEEEEeCChHh---------------------------------
Confidence 34569999999985 345667777789888899999999997652
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+...|.-|. +.|.+..++.++-.+.++..+.
T Consensus 167 ----------LlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 167 ----------IPVTVLSRC-LQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred ----------hhhHHHHHH-HhcccCCCChHHHHHHHHHHHH
Confidence 344566666 7888888888877777765543
No 381
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.43 E-value=0.0028 Score=64.63 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999888655
No 382
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.42 E-value=0.018 Score=61.04 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHH--------------------HHHHHHHHHHhcCCc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 997 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~--------------------~I~~lF~~A~k~~Ps 997 (1203)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777665432111 1111 123332221 23457
Q ss_pred eEEEccchhhcc
Q 000978 998 VIFVDEVDSMLG 1009 (1203)
Q Consensus 998 ILfIDEID~L~~ 1009 (1203)
+|+||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999998864
No 383
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.42 E-value=0.052 Score=65.10 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=76.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1017 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 1017 (1203)
-++|+||.++|||++++.+...+.-.++.++..++......- ...-..+..+.......||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999988888875556666665554322111 11222223333324579999999876
Q ss_pred HHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC--CCCcHHHHhcccccccCCCCCHHHHHH-------------HHHH
Q 000978 1018 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVNLPDAPNRAK-------------ILQV 1082 (1203)
Q Consensus 1018 ~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p--~~Ld~aLlrRFd~~I~v~~Pd~eeR~e-------------IL~~ 1082 (1203)
..+...+-...|... .++++.+++... ..+.+.+..|. ..+.+-+.+..+... .++.
T Consensus 107 ---~~W~~~lk~l~d~~~----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~ 178 (398)
T COG1373 107 ---PDWERALKYLYDRGN----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEK 178 (398)
T ss_pred ---hhHHHHHHHHHcccc----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHH
Confidence 112222222223221 134444433321 23334555574 667777888888754 4666
Q ss_pred HHhhCCCC
Q 000978 1083 ILAKEDLS 1090 (1203)
Q Consensus 1083 ~l~~~~l~ 1090 (1203)
++...+++
T Consensus 179 Yl~~GGfP 186 (398)
T COG1373 179 YLETGGFP 186 (398)
T ss_pred HHHhCCCc
Confidence 66655544
No 384
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.42 E-value=0.02 Score=66.76 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se 971 (1203)
+.+-+.....|..++.. .. ..-|..|.|+|-.|||||++.+++.+.++.+.++++|-+
T Consensus 8 v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred ccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 34455666666666532 11 122356799999999999999999999999999998854
No 385
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.41 E-value=0.025 Score=62.86 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
.+...+|++||||+|||++|..++.+. |-+.++++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 344679999999999999998776542 666666654
No 386
>PRK00625 shikimate kinase; Provisional
Probab=96.40 E-value=0.0029 Score=67.17 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998876
No 387
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.40 E-value=0.0085 Score=62.60 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=35.0
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 972 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~---fi~I~~seL 972 (1203)
++|-++..+.|...+.. . ....++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35666666777666531 1 12233689999999999999999998777322 777776554
No 388
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.40 E-value=0.021 Score=68.92 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=23.9
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1203)
.+-|+|+|||| +++++|||+||+.+.
T Consensus 194 ~~~iil~GppG--tGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPG--VGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCC--CCHHHHHHHHHHHhc
Confidence 56899999999 999999999999875
No 389
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.37 E-value=0.03 Score=60.96 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=38.2
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 000978 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1203)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1203)
.-|||+|=+--.+++...|...+. ....+-|||+||+| .+++.||+++|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G--~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESG--SGKSHLLQAACAAAE 63 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 467888743334556666665532 12346799999999 999999999999863
No 390
>PRK10536 hypothetical protein; Provisional
Probab=96.37 E-value=0.018 Score=64.84 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000978 938 GILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~e 959 (1203)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999885
No 391
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.36 E-value=0.032 Score=64.39 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=34.4
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 000978 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1203)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1203)
+|++|-. .++.+..|..++- . ...+.+||+||+| .++++||+|+|++..
T Consensus 13 ~~~~~~g--~~~~~~~L~~~~~----~-----------~~~~~lll~Gp~G--tGKT~la~~~~~~l~ 61 (337)
T PRK12402 13 LLEDILG--QDEVVERLSRAVD----S-----------PNLPHLLVQGPPG--SGKTAAVRALARELY 61 (337)
T ss_pred cHHHhcC--CHHHHHHHHHHHh----C-----------CCCceEEEECCCC--CCHHHHHHHHHHHhc
Confidence 4666543 3666666665442 1 1123599999999 999999999999874
No 392
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.35 E-value=0.019 Score=75.17 Aligned_cols=137 Identities=20% Similarity=0.285 Sum_probs=84.4
Q ss_pred ceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcC--------------CceEEE
Q 000978 937 KGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA--------------PSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~L-ArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~--------------PsILfI 1001 (1203)
++++++||||+|||+| ..+|-.++...|+.++.+.-. .++..+..+-+.....+ --|||.
T Consensus 1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFc 1569 (3164)
T COG5245 1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFC 1569 (3164)
T ss_pred ceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEe
Confidence 7899999999999995 678888888888888764321 12223333322221111 138999
Q ss_pred ccchhhccCCCCC---chhHHHHHHHHH------HHHhhcCCcccCCccEEEEEecCCCCCCc-----HHHHhccccccc
Q 000978 1002 DEVDSMLGRRENP---GEHEAMRKMKNE------FMVNWDGLRTKDTERILVLAATNRPFDLD-----EAVIRRLPRRLM 1067 (1203)
Q Consensus 1002 DEID~L~~~r~~~---~~~~al~~il~e------LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld-----~aLlrRFd~~I~ 1067 (1203)
|||+ | +....- ..--+++.++.. +-..|-. -.+++|.+++|++.+.- ..++|+- ..++
T Consensus 1570 DeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-----I~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf 1641 (3164)
T COG5245 1570 DEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-----ICGIILYGACNPGTDEGRVKYYERFIRKP-VFVF 1641 (3164)
T ss_pred eccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhh-----hcceEEEccCCCCCCcccCccHHHHhcCc-eEEE
Confidence 9999 3 332221 111123333322 1112222 26789999999876433 4555543 4577
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 000978 1068 VNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1068 v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
+..|.......|.+.++..
T Consensus 1642 ~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred ecCcchhhHHHHHHHHHHH
Confidence 8899999999999887765
No 393
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.021 Score=68.14 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=60.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccccc----------cccc------cccHHHHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSIT----------SKWF------GEGEKYVKAVFSLAS 992 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL-------g~~fi~I~~seL~----------s~~~------G~~e~~I~~lF~~A~ 992 (1203)
+..++|+||+|+||||++..+|..+ +..+..+++..+. .... ......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999888765 2344444433220 0101 11112222222222
Q ss_pred hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcc
Q 000978 993 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRL 1062 (1203)
Q Consensus 993 k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRF 1062 (1203)
....+|+||.+..+. . .... +.++...++.... +...++|+.+|.....+.. +.++|
T Consensus 253 -~~~DlVLIDTaGr~~-----~-~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP-----K-DFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCc-----c-CHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHh
Confidence 346899999998652 1 1111 2333333333221 2256788888777666664 33444
No 394
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.34 E-value=0.015 Score=67.47 Aligned_cols=102 Identities=16% Similarity=0.304 Sum_probs=58.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecccccc-------ccccccHHHHHHHHHHHHhcCCceEEEccc
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITS-------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1004 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~f-i~I~~seL~s-------~~~G~~e~~I~~lF~~A~k~~PsILfIDEI 1004 (1203)
..+++|+.|+|+-|.|||+|.-..-..+..+- .++..-.++. .+.|+. ..+..+-.... ..-.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 34679999999999999999999888774322 2222111111 111222 11111111111 12369999999
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 1005 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 1005 D~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
+.- +..+--.+.+++++|+ ...|.+++|+|.+
T Consensus 140 ~Vt-----DI~DAMiL~rL~~~Lf----------~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVT-----DIADAMILGRLLEALF----------ARGVVLVATSNTA 171 (367)
T ss_pred eec-----ChHHHHHHHHHHHHHH----------HCCcEEEEeCCCC
Confidence 722 3333344556666664 2468999999963
No 395
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.045 Score=65.33 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=50.3
Q ss_pred cchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 400 LSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 400 lse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+....|.-+++-..-.++.+++. .+.=-+=-|+-||+|||| +++..|+=|+|+|++=..-.|.
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~Y--krvGkawKRGYLLYGPPG--TGKSS~IaAmAn~L~ydIydLe 267 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFY--KRVGKAWKRGYLLYGPPG--TGKSSFIAAMANYLNYDIYDLE 267 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHH--HhcCcchhccceeeCCCC--CCHHHHHHHHHhhcCCceEEee
Confidence 35888999999999999999984 443445567899999999 9999999999999875444333
No 396
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.03 Score=70.16 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
..-|++|||+|.+ +....+.|.+.|+..++.+.+|.+++....
T Consensus 118 k~KV~IIDEVh~L---S~~A~NALLKtLEEPP~~v~FILaTtd~~k---------------------------------- 160 (702)
T PRK14960 118 RFKVYLIDEVHML---STHSFNALLKTLEEPPEHVKFLFATTDPQK---------------------------------- 160 (702)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhcCCCCcEEEEEECChHh----------------------------------
Confidence 4569999999974 234667788889988899988888874431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+...|..|. ..|.+..++.++-.+.++..+.+
T Consensus 161 ---------Ip~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 161 ---------LPITVISRC-LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred ---------hhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH
Confidence 233455666 78889988888777777655543
No 397
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.32 E-value=0.052 Score=63.34 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=53.0
Q ss_pred CeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 000978 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~ 737 (1203)
.-||+|||+|.+- .+..+.|-..|+..++++++|..++..+
T Consensus 118 ~~vviidea~~l~---~~~~~~Ll~~le~~~~~~~lIl~~~~~~------------------------------------ 158 (355)
T TIGR02397 118 YKVYIIDEVHMLS---KSAFNALLKTLEEPPEHVVFILATTEPH------------------------------------ 158 (355)
T ss_pred ceEEEEeChhhcC---HHHHHHHHHHHhCCccceeEEEEeCCHH------------------------------------
Confidence 3499999999852 3455667777787778888777765432
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 738 ~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
++.+.|.+|+ ..+++..|+.++...+++..+.
T Consensus 159 -------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 159 -------KIPATILSRC-QRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred -------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHH
Confidence 1456677888 6899999999888888876554
No 398
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.32 E-value=0.02 Score=69.71 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=51.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccccc--------HHHHHHHHHHHHhcCC
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGEG--------EKYVKAVFSLASKIAP 996 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~------~~G~~--------e~~I~~lF~~A~k~~P 996 (1203)
.+..-+||.|+||+|||+|+..+|..+ +.++++++..+-... -+|.. +..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 343569999999999999999997765 457777776442111 01111 1123455566677789
Q ss_pred ceEEEccchhhcc
Q 000978 997 SVIFVDEVDSMLG 1009 (1203)
Q Consensus 997 sILfIDEID~L~~ 1009 (1203)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 399
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.31 E-value=0.071 Score=62.09 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
++.|||.||+| +++++||++||+.++.+++.+.-
T Consensus 64 ~~~ilL~G~pG--tGKTtla~~lA~~l~~~~~rV~~ 97 (327)
T TIGR01650 64 DRRVMVQGYHG--TGKSTHIEQIAARLNWPCVRVNL 97 (327)
T ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHCCCeEEEEe
Confidence 46899999999 99999999999999999987765
No 400
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.29 E-value=0.031 Score=61.29 Aligned_cols=93 Identities=19% Similarity=0.341 Sum_probs=56.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccc-----------------------------cccc----c
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI-----------------------------TSKW----F 977 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL-----------------------------~s~~----~ 977 (1203)
+...+|+.||||+|||.|+..++... |-+++.++..+- .... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 33679999999999999998876433 777777765321 0000 0
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l 1031 (1203)
...+..+..+...+....+.+++||-+..+.... . ....+..+..+...+
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~-~---~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYD-D---PEELRRFLRALIKFL 147 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS-S---GGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC-C---HHHHHHHHHHHHHHH
Confidence 1223445566666677788999999999993222 2 122344555555544
No 401
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.063 Score=65.81 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=57.7
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
..=|++|||+|.+ +.+..+.|-..|+.-+..+++|.++|..+.
T Consensus 116 ~~KVvIIDEah~L---s~~A~NaLLK~LEePp~~v~fIlatte~~K---------------------------------- 158 (491)
T PRK14964 116 KFKVYIIDEVHML---SNSAFNALLKTLEEPAPHVKFILATTEVKK---------------------------------- 158 (491)
T ss_pred CceEEEEeChHhC---CHHHHHHHHHHHhCCCCCeEEEEEeCChHH----------------------------------
Confidence 3459999999974 345677888899998899999999875431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.+.|..|. +.|++..++.++....++....+
T Consensus 159 ---------l~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 159 ---------IPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred ---------HHHHHHHhh-eeeecccccHHHHHHHHHHHHHH
Confidence 456777888 88999999998888777765543
No 402
>PRK13949 shikimate kinase; Provisional
Probab=96.28 E-value=0.0035 Score=66.19 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
+.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 403
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.27 E-value=0.013 Score=56.81 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+++|+||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888877666
No 404
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.049 Score=69.13 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCC
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 701 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d 701 (1203)
.--|++|||+|.+ +.+..|.|-+.|+.-+.++++|.++|...
T Consensus 119 r~KVIIIDEah~L---T~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 119 RFKVYMIDEVHML---TNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred CceEEEEeChhhC---CHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 4469999999985 33456667778988888999998888664
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=96.27 E-value=0.12 Score=62.64 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------cc-----cccHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 990 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~s~---------------~~-----G~~e~~I~~lF~~ 990 (1203)
++.-|+++|++|+||||++..+|..+ |..+..+++..+... ++ ..+..........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999888777655 566666666432110 01 1223334455666
Q ss_pred HHhcCCceEEEccchhh
Q 000978 991 ASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 991 A~k~~PsILfIDEID~L 1007 (1203)
++.....+|+||=.-++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66667789999977644
No 406
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.27 E-value=0.0092 Score=70.64 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
...||+||||+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3599999999999999999998773
No 407
>PRK14532 adenylate kinase; Provisional
Probab=96.23 E-value=0.0039 Score=66.28 Aligned_cols=34 Identities=35% Similarity=0.626 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
.|+|.||||+|||++|+.||+.+|+.++ ++.+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHH
Confidence 5899999999999999999999987665 444443
No 408
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.22 E-value=0.0077 Score=67.89 Aligned_cols=97 Identities=22% Similarity=0.373 Sum_probs=58.5
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 972 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~-~seL 972 (1203)
..++++++-.....+.+.+++.... +....+|+.|++|+|||+++++++..+. ..++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3466676665555555555554211 1125799999999999999999998883 3445443 2222
Q ss_pred ccc------ccc-ccHHHHHHHHHHHHhcCCceEEEccch
Q 000978 973 TSK------WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 973 ~s~------~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
.-. +.. ........++..+.+..|++|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 111 123345677788888999999999995
No 409
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.22 E-value=0.015 Score=71.44 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=61.6
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 972 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~-seL 972 (1203)
..++++++-.++..+.++.++.. +..-+|++||+|+|||++..++..++. .+++.+.- .++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45678888777777777776642 223489999999999999998877763 44555532 222
Q ss_pred ccccccc------cHHHHHHHHHHHHhcCCceEEEccch
Q 000978 973 TSKWFGE------GEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 973 ~s~~~G~------~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
.-..++. .......+...+.+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111 11233455666778899999999995
No 410
>PRK06217 hypothetical protein; Validated
Probab=96.22 E-value=0.0043 Score=65.98 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.|+|.|++|+|||++|++|++.++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887665
No 411
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.055 Score=67.62 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
...-|++|||+|.+ +.+..+.|...|+..+..+++|.+++.++.
T Consensus 118 ~~~kViIIDE~~~L---t~~a~naLLKtLEepp~~~ifIlatt~~~k--------------------------------- 161 (559)
T PRK05563 118 AKYKVYIIDEVHML---STGAFNALLKTLEEPPAHVIFILATTEPHK--------------------------------- 161 (559)
T ss_pred CCeEEEEEECcccC---CHHHHHHHHHHhcCCCCCeEEEEEeCChhh---------------------------------
Confidence 44569999999985 345677788889988899999998876532
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+...|..|. +.|++..|+.++-...++..++
T Consensus 162 ----------i~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 162 ----------IPATILSRC-QRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred ----------CcHHHHhHh-eEEecCCCCHHHHHHHHHHHHH
Confidence 344566677 7889999988877777765554
No 412
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.21 E-value=0.0041 Score=74.13 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccccc
Q 000978 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 471 (1203)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~ 471 (1203)
+..|..|..|++-|.+...+..-.+ -.-.++.|||.||+| +++++|||+||+.++++++.+|++.|.
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhc
Confidence 8999999999999977665432111 111347899999999 999999999999999999999999885
No 413
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.20 E-value=0.004 Score=65.68 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
|+|+||||+|||++|+.||..+++. .+++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 7899999999999999999999864 45555554
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.20 E-value=0.0087 Score=70.24 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-cccc---------cccccccHHHHHHHHHHHHhcCCceEEEc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISM-SSIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg----~~fi~I~~-seL~---------s~~~G~~e~~I~~lF~~A~k~~PsILfID 1002 (1203)
..+||.||+|+||||+.++++..+. ..++.+.- .++. ..-.|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4699999999999999999988764 33444321 1211 11122222234556667778899999999
Q ss_pred cch
Q 000978 1003 EVD 1005 (1203)
Q Consensus 1003 EID 1005 (1203)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 415
>PRK13948 shikimate kinase; Provisional
Probab=96.17 E-value=0.0051 Score=65.94 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.+++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 345678999999999999999999999999998665
No 416
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.014 Score=69.09 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=57.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccc----------ccccccc------HHHHHHHHHHHHhcC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSIT----------SKWFGEG------EKYVKAVFSLASKIA 995 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----g-~~fi~I~~seL~----------s~~~G~~------e~~I~~lF~~A~k~~ 995 (1203)
..++|.||+|+|||+++..||..+ | ..+..+....+. .+..|-+ ...+...+ .+...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHhcC
Confidence 569999999999999999998764 3 244444443321 0111111 01111111 22234
Q ss_pred CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHH
Q 000978 996 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAV 1058 (1203)
Q Consensus 996 PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aL 1058 (1203)
..+|+||.....- . .. .+.+.+..+..... ....++|+.+|+..+.+...+
T Consensus 216 ~DlVLIDTaG~~~------~-d~----~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 216 KHMVLIDTIGMSQ------R-DR----TVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCEEEEcCCCCCc------c-cH----HHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 5899999986331 0 11 12223333333221 235688888888777666543
No 417
>PLN03025 replication factor C subunit; Provisional
Probab=96.17 E-value=0.031 Score=64.89 Aligned_cols=75 Identities=8% Similarity=0.122 Sum_probs=49.9
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
..-||+|||+|.+-. +.-+.|...++..+....+|-.+|....
T Consensus 99 ~~kviiiDE~d~lt~---~aq~aL~~~lE~~~~~t~~il~~n~~~~---------------------------------- 141 (319)
T PLN03025 99 RHKIVILDEADSMTS---GAQQALRRTMEIYSNTTRFALACNTSSK---------------------------------- 141 (319)
T ss_pred CeEEEEEechhhcCH---HHHHHHHHHHhcccCCceEEEEeCCccc----------------------------------
Confidence 456999999998643 3345567777776665544444443321
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.++|..|. ..|.+..|++++....++...++
T Consensus 142 ---------i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 142 ---------IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred ---------cchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH
Confidence 344566666 68999999999888888765543
No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.17 E-value=0.047 Score=60.28 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------ccc-------------------c
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KWF-------------------G 978 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s--------------~~~-------------------G 978 (1203)
+...++++|+||+|||+|+.+++.+. +..+++++..+-.. .++ .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 33569999999999999999997653 66776666532100 000 0
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEccchhhc
Q 000978 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
..+..+..+........+.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012233444445555688999999998764
No 419
>PRK06762 hypothetical protein; Provisional
Probab=96.17 E-value=0.011 Score=61.45 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
.-|+|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999997667677665543
No 420
>PRK04040 adenylate kinase; Provisional
Probab=96.15 E-value=0.04 Score=59.34 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA--GANFI 965 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL--g~~fi 965 (1203)
.-|+|+|+||+|||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 569999999999999999999999 55553
No 421
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.068 Score=67.49 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=51.5
Q ss_pred CeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 000978 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~ 737 (1203)
--|++|||+|.+ +.+..+.|-..|+.-++.+++|+.++..+.
T Consensus 122 ~KViIIDEad~L---t~~a~naLLK~LEePp~~tvfIL~t~~~~~----------------------------------- 163 (620)
T PRK14948 122 WKVYVIDECHML---STAAFNALLKTLEEPPPRVVFVLATTDPQR----------------------------------- 163 (620)
T ss_pred ceEEEEECcccc---CHHHHHHHHHHHhcCCcCeEEEEEeCChhh-----------------------------------
Confidence 359999999985 346778888899988899999998874421
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 000978 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1203)
Q Consensus 738 ~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~ 774 (1203)
+.+.|..|. +.|++..+..++-...+..
T Consensus 164 --------llpTIrSRc-~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 164 --------VLPTIISRC-QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred --------hhHHHHhhe-eEEEecCCCHHHHHHHHHH
Confidence 345566677 7888888877665555543
No 422
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0043 Score=65.69 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
++|+|.|++|+|||++.+++|+.|+.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998876
No 423
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.11 E-value=0.031 Score=60.57 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=40.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc--------------cc-----cccc-ccHHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--------------TS-----KWFG-EGEKYVKAVFSLASK 993 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL--------------~s-----~~~G-~~e~~I~~lF~~A~k 993 (1203)
+-++|.||+|+|||+.+..+|..+ +..+-.+++..+ ++ .... .....+.+.++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 569999999999999888887766 444433333222 00 0001 122334445555555
Q ss_pred cCCceEEEccch
Q 000978 994 IAPSVIFVDEVD 1005 (1203)
Q Consensus 994 ~~PsILfIDEID 1005 (1203)
....+|+||=..
T Consensus 82 ~~~D~vlIDT~G 93 (196)
T PF00448_consen 82 KGYDLVLIDTAG 93 (196)
T ss_dssp TTSSEEEEEE-S
T ss_pred cCCCEEEEecCC
Confidence 556799999764
No 424
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.10 E-value=0.036 Score=60.12 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=40.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEE-------------EEeccccccc---cccccHHHHHHHHHHHHhcC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFI-------------NISMSSITSK---WFGEGEKYVKAVFSLASKIA 995 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi-------------~I~~seL~s~---~~G~~e~~I~~lF~~A~k~~ 995 (1203)
+-++|.||.|+|||+|.+.|+... |.++- .+...+-+.. .+......+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 468999999999999999998433 44321 1111110000 00111133455666555457
Q ss_pred CceEEEccch
Q 000978 996 PSVIFVDEVD 1005 (1203)
Q Consensus 996 PsILfIDEID 1005 (1203)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 425
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.09 E-value=0.032 Score=59.11 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc-----------------ccccHHHHHHHHHHHHhcCCceEEE
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~-----------------~G~~e~~I~~lF~~A~k~~PsILfI 1001 (1203)
+|+.|++|+|||++|..++...+.+++++....-...- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998887788887654321110 001111223332211 14679999
Q ss_pred ccchhhccCC
Q 000978 1002 DEVDSMLGRR 1011 (1203)
Q Consensus 1002 DEID~L~~~r 1011 (1203)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 426
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.08 E-value=0.0052 Score=61.90 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
|+|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 427
>PRK09354 recA recombinase A; Provisional
Probab=96.08 E-value=0.034 Score=65.25 Aligned_cols=73 Identities=26% Similarity=0.319 Sum_probs=48.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------------cccccccHHHHHHHHHHHHhcCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIAPS 997 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~----------------s~~~G~~e~~I~~lF~~A~k~~Ps 997 (1203)
+-++|+||+|+|||+|+-.++.+. |..+++++...-. -......+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 458999999999999998876443 7778887765411 001112233333333444556789
Q ss_pred eEEEccchhhcc
Q 000978 998 VIFVDEVDSMLG 1009 (1203)
Q Consensus 998 ILfIDEID~L~~ 1009 (1203)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999998875
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.07 E-value=0.21 Score=60.30 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------c-----ccc----c-ccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------S-----KWF----G-EGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~----------s-----~~~----G-~~e~~I~~lF~~A 991 (1203)
++.-|+|+|++|+||||++..||..+ |..+..+++..+. . .++ + .+.......+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999777 6677666664321 0 001 0 1122233445555
Q ss_pred HhcCCceEEEccchhh
Q 000978 992 SKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L 1007 (1203)
+.....+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999976543
No 429
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.06 E-value=0.29 Score=59.31 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=47.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------cc----c-ccHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF----G-EGEKYVKAVFSL 990 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~s~---------------~~----G-~~e~~I~~lF~~ 990 (1203)
++.-+++.|++|+|||+++..+|..+ |..+..+++..+... ++ + .+.......+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999988887664 566777766533110 00 0 122333455566
Q ss_pred HHhcCCceEEEccchhh
Q 000978 991 ASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 991 A~k~~PsILfIDEID~L 1007 (1203)
+......+|+||=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 66666789999976544
No 430
>PRK14531 adenylate kinase; Provisional
Probab=96.05 E-value=0.0059 Score=65.02 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|+||||+|||++++.||..+|++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999998876553
No 431
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.035 Score=60.14 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
=|+|.|+||+|||++|+.+|++|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38999999999999999999999
No 432
>PRK10436 hypothetical protein; Provisional
Probab=96.04 E-value=0.021 Score=69.49 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=62.3
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 972 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~-~seL 972 (1203)
..++++++-.+...+.+++++.. +..-||++||+|+||||+..++..+++ .+++.+. +.++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 45778888777777777776642 324599999999999998888777763 3455443 2222
Q ss_pred ccc-----cccc-cHHHHHHHHHHHHhcCCceEEEccch
Q 000978 973 TSK-----WFGE-GEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 973 ~s~-----~~G~-~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
.-. .++. .......++..+.+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 111 1111 11234566677788899999999995
No 433
>PRK05973 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.055 Score=60.44 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
.+..-+||.|+||+|||+++-.+|... |.+++.+++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 444569999999999999998887654 7677666653
No 434
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.02 E-value=0.0054 Score=65.04 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998766543
No 435
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.057 Score=68.26 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=38.2
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 000978 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1203)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1203)
+|+++-.. ++.+..|..+.- ... ....+||+||+| +++++||++||+.+...
T Consensus 14 tFddIIGQ--e~vv~~L~~ai~----~~r----------l~Ha~Lf~GP~G--vGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 14 TFADLVGQ--EHVVKALQNALD----EGR----------LHHAYLLTGTRG--VGKTTIARILAKSLNCE 65 (709)
T ss_pred CHHHHcCc--HHHHHHHHHHHH----cCC----------CCeEEEEECCCC--CcHHHHHHHHHHHhccc
Confidence 46664443 788877777643 111 234799999999 99999999999998764
No 436
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.1 Score=58.27 Aligned_cols=144 Identities=10% Similarity=0.054 Sum_probs=93.8
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEeccccc---cccccccHHHHHHHHHHHH----hcCCceE
Q 000978 937 KGILLFGPPG-TGKTMLAKAVATEAGA---------NFINISMSSIT---SKWFGEGEKYVKAVFSLAS----KIAPSVI 999 (1203)
Q Consensus 937 ~gVLL~GPPG-TGKT~LArALA~eLg~---------~fi~I~~seL~---s~~~G~~e~~I~~lF~~A~----k~~PsIL 999 (1203)
...||.|..+ +||..++..++..+-. .++.+....-. +.. -.-..++.+...+. .....|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEEE
Confidence 5799999998 9999999998887722 23333221100 000 11234455544443 3345699
Q ss_pred EEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000978 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKI 1079 (1203)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eI 1079 (1203)
+|+++|.|- ....+.||..++. ++.++++|..|..+..+.+.+++|+ ..+.+..|....-.++
T Consensus 94 II~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 999999882 3344566666655 3467888888888999999999999 7889999998777777
Q ss_pred HHHHHhhCCCCCchhHHHHHHH
Q 000978 1080 LQVILAKEDLSPDVDFDAIANM 1101 (1203)
Q Consensus 1080 L~~~l~~~~l~~d~dl~~LA~~ 1101 (1203)
....+... .....++-|.+.
T Consensus 157 ~~~~~~p~--~~~~~l~~i~~~ 176 (263)
T PRK06581 157 YSQFIQPI--ADNKTLDFINRF 176 (263)
T ss_pred HHHhcccc--cccHHHHHHHHH
Confidence 77665432 223334445444
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.00 E-value=0.0058 Score=62.42 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
++|+|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876654
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.00 E-value=0.056 Score=61.06 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+..-+|++|+||+|||+++..+|... |-+++.++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 33569999999999999999887643 5566666543
No 439
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.99 E-value=0.057 Score=59.53 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~ 969 (1203)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344569999999999999998887654 778877775
No 440
>PRK14530 adenylate kinase; Provisional
Probab=95.99 E-value=0.0063 Score=66.39 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.||||+|||++|+.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877644
No 441
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.99 E-value=0.051 Score=61.13 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~ 969 (1203)
+..-++|.|+||+|||+++..+|..+ +..++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 33568999999999999999887654 667777665
No 442
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.99 E-value=0.03 Score=59.01 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+.-.++|.||+||||++|.+++|...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44569999999999999999999765
No 443
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0054 Score=63.13 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.+||++|-||||||+++.+||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999887764
No 444
>PRK08233 hypothetical protein; Provisional
Probab=95.97 E-value=0.041 Score=57.67 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg-~~fi~I~ 968 (1203)
.-|.|.|+||+||||+|+.|+..++ ..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3588899999999999999999985 4444444
No 445
>PF13479 AAA_24: AAA domain
Probab=95.96 E-value=0.026 Score=61.77 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=38.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc---cccc-------ccccHHHHHHHHHHH--HhcCCceEEEccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI---TSKW-------FGEGEKYVKAVFSLA--SKIAPSVIFVDEV 1004 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL---~s~~-------~G~~e~~I~~lF~~A--~k~~PsILfIDEI 1004 (1203)
-.+||||+||+|||++|..+ + ..+.+++..= +..+ +. +-..+..++..+ ......+|+||.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~-s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPIT-SWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcC-CHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 47999999999999999888 2 2223332110 0000 01 122233444332 3446789999988
Q ss_pred hhhc
Q 000978 1005 DSML 1008 (1203)
Q Consensus 1005 D~L~ 1008 (1203)
+.+.
T Consensus 78 s~~~ 81 (213)
T PF13479_consen 78 SWLE 81 (213)
T ss_pred HHHH
Confidence 8763
No 446
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.95 E-value=0.021 Score=69.08 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=66.1
Q ss_pred CCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---EE
Q 000978 891 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NI 967 (1203)
Q Consensus 891 i~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi---~I 967 (1203)
.+......++++++......+.+.+++.. |-.=+|+.||+|+|||+...++.++++.+.. ++
T Consensus 228 l~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 228 LDKDQVILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred eccccccCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 33344467788888888888888877653 3334899999999999999999999855433 33
Q ss_pred e-cccccccccccc------HHHHHHHHHHHHhcCCceEEEccch
Q 000978 968 S-MSSITSKWFGEG------EKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 968 ~-~seL~s~~~G~~------e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
. +-++.-.-+.+. .-.....++..-++.|.||++.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 2 112211111111 0113445666678899999999995
No 447
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0075 Score=64.43 Aligned_cols=33 Identities=42% Similarity=0.806 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
.|+|.||||+||||+|+.||+.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 589999999999999999999954 445554333
No 448
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.90 E-value=0.046 Score=59.69 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 971 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g------~~fi~I~~se 971 (1203)
+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33569999999999999999998654 3 6677777654
No 449
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.089 Score=66.23 Aligned_cols=72 Identities=10% Similarity=0.175 Sum_probs=52.7
Q ss_pred eEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 000978 659 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 738 (1203)
Q Consensus 659 ~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~ 738 (1203)
-|++|||+|.+ +.+..|.|...|+.-++.+++|.+||.+..
T Consensus 126 KV~IIDEvh~L---s~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k------------------------------------ 166 (618)
T PRK14951 126 KVFMIDEVHML---TNTAFNAMLKTLEEPPEYLKFVLATTDPQK------------------------------------ 166 (618)
T ss_pred eEEEEEChhhC---CHHHHHHHHHhcccCCCCeEEEEEECCchh------------------------------------
Confidence 49999999984 344577788889888899988888875432
Q ss_pred cCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 739 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 739 ~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+-..|..|. ..|.+..++.++....++..+.
T Consensus 167 -------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 167 -------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred -------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHHH
Confidence 233355566 7889988888877777775543
No 450
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.87 E-value=0.014 Score=67.30 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-ccc-------ccccccccHHHHHHHHHHHHhcCCceEEEcc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSI-------TSKWFGEGEKYVKAVFSLASKIAPSVIFVDE 1003 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~-seL-------~s~~~G~~e~~I~~lF~~A~k~~PsILfIDE 1003 (1203)
.++|+.|++|+|||+++++++..+ +..++.+.- .++ +.-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999886 233433321 121 1101111112466788888899999999999
Q ss_pred ch
Q 000978 1004 VD 1005 (1203)
Q Consensus 1004 ID 1005 (1203)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 94
No 451
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.86 E-value=0.016 Score=68.75 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------cccccccHHHHHHHHHHHHhcCCceE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVI 999 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg-----~~fi~I~~s-eL~-----------s~~~G~~e~~I~~lF~~A~k~~PsIL 999 (1203)
..+|++||+|+||||++++++..+. ..++.+.-+ ++. ...+|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999988762 345555322 221 01112222234566677888899999
Q ss_pred EEccch
Q 000978 1000 FVDEVD 1005 (1203)
Q Consensus 1000 fIDEID 1005 (1203)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999995
No 452
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.86 E-value=0.32 Score=56.53 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=63.1
Q ss_pred CCceEEEccchhhccCCCC-----CchhHHHHHHHHHHHHhhcCCcccCCccEE-EEEecCC---CC--CCcHHHHhccc
Q 000978 995 APSVIFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDTERIL-VLAATNR---PF--DLDEAVIRRLP 1063 (1203)
Q Consensus 995 ~PsILfIDEID~L~~~r~~-----~~~~~al~~il~eLL~~ldgl~~~~~~~Vl-VIaTTN~---p~--~Ld~aLlrRFd 1063 (1203)
.|.++-||++..|++...- ...+...-.+...|+..+.+-..-.++.++ .+++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 3667779999999965321 112223334555555554433222223332 2455432 22 44555544321
Q ss_pred ---------------------ccccCCCCCHHHHHHHHHHHHhhCCCCC----chhHHHHHHHcCCCcHHHHH
Q 000978 1064 ---------------------RRLMVNLPDAPNRAKILQVILAKEDLSP----DVDFDAIANMTDGYSGSDLK 1111 (1203)
Q Consensus 1064 ---------------------~~I~v~~Pd~eeR~eIL~~~l~~~~l~~----d~dl~~LA~~T~G~Sg~DL~ 1111 (1203)
..|.++..+.+|-..+++.+....-+.. +.-.+++.-.+.| .++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhc
Confidence 1578889999999999999887654432 2233444444444 566654
No 453
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.85 E-value=0.035 Score=60.95 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 971 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~se 971 (1203)
+..-+.|+||||+|||+|+..++... +..+++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33568999999999999999997543 25777887654
No 454
>PRK13764 ATPase; Provisional
Probab=95.83 E-value=0.015 Score=72.51 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=42.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----ccccccccHHHHHHHHHHHHhcCCceEEEccch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~-~seL-----~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
.+||++||||+||||++++++..+. ..+..+. ..++ ...+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3333432 1222 11110 000111223333456789999999985
No 455
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.82 E-value=0.0066 Score=62.97 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866643
No 456
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.82 E-value=0.008 Score=66.72 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
..|+|.||||+||||+|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998776653
No 457
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.098 Score=64.59 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=58.3
Q ss_pred HHHHHHHHhhh-ccCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 000978 643 INTLFEVVFSE-SRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1203)
Q Consensus 643 i~~L~ev~~~~-~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~ 721 (1203)
|+.|.+.+... ....+-||+|||+|.+ +.+..+.|-..|+.-+.++++|..++....
T Consensus 101 iR~l~~~~~~~p~~~~~kVVIIDEad~l---s~~a~naLLk~LEep~~~t~~Il~t~~~~k------------------- 158 (504)
T PRK14963 101 VRDLREKVLLAPLRGGRKVYILDEAHMM---SKSAFNALLKTLEEPPEHVIFILATTEPEK------------------- 158 (504)
T ss_pred HHHHHHHHhhccccCCCeEEEEECcccc---CHHHHHHHHHHHHhCCCCEEEEEEcCChhh-------------------
Confidence 44444444321 1135569999999964 344566677778777777777777765432
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 722 ~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.+.|..|. ..|.+..|+.++....++..+++
T Consensus 159 ------------------------l~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 159 ------------------------MPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred ------------------------CChHHhcce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 334455566 68999999999888888765543
No 458
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.82 E-value=0.032 Score=62.27 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL 972 (1203)
|+|+|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566777765444
No 459
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.083 Score=66.28 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=51.8
Q ss_pred eEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 000978 659 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 738 (1203)
Q Consensus 659 ~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~ 738 (1203)
=|++|||+|.+- .+..|.|-+.|+..++.+++|.+||..+.
T Consensus 121 KVvIIdev~~Lt---~~a~naLLk~LEepp~~~~fIl~t~~~~k------------------------------------ 161 (576)
T PRK14965 121 KIFIIDEVHMLS---TNAFNALLKTLEEPPPHVKFIFATTEPHK------------------------------------ 161 (576)
T ss_pred eEEEEEChhhCC---HHHHHHHHHHHHcCCCCeEEEEEeCChhh------------------------------------
Confidence 489999999742 45678899999998999999998876532
Q ss_pred cCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 739 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 739 ~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
+-+.|..|. ..|++..++.++-...+...+
T Consensus 162 -------l~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 162 -------VPITILSRC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred -------hhHHHHHhh-hhhhcCCCCHHHHHHHHHHHH
Confidence 344566666 678888777776666555443
No 460
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.81 E-value=0.088 Score=58.90 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=73.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccc--------ccc---c---HHHHHH----HHHHHH---
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------FGE---G---EKYVKA----VFSLAS--- 992 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL~s~~--------~G~---~---e~~I~~----lF~~A~--- 992 (1203)
+-.+++.|++|||||+|+..|...+. +..+.+-++.....+ +.. . +..+.. +-..+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35799999999999999999987773 333333332221111 000 0 111111 111111
Q ss_pred h---cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCC
Q 000978 993 K---IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 993 k---~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~ 1069 (1203)
. .++.+|+||++-.- ..-...+..++. .| ..-++.+|..+.....|++.++.-.+.++.++
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~--~g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------KLKSKILRQFFN--NG----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh--cc----cccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 23579999997421 011223333332 11 24568888888888999999988777666665
Q ss_pred CCCHHHHHHHHHHH
Q 000978 1070 LPDAPNRAKILQVI 1083 (1203)
Q Consensus 1070 ~Pd~eeR~eIL~~~ 1083 (1203)
-+..++..|++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 4566665555554
No 461
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.81 E-value=0.009 Score=62.46 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
..++|.|++|+|||++++.+|..++++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988664
No 462
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.80 E-value=0.0075 Score=63.64 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se 971 (1203)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 45999999999999999999999988777665443
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.79 E-value=0.068 Score=58.66 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~ 958 (1203)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 464
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.062 Score=63.97 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=43.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----c---cc---------ccccHHHHHHHHHHHHh-cCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----S---KW---------FGEGEKYVKAVFSLASK-IAP 996 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~----s---~~---------~G~~e~~I~~lF~~A~k-~~P 996 (1203)
+.|+|.||+|+|||+++..||..+ +..+..+++..+. . .| ....+..+...+..+.. ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 679999999999999999999877 4455555543221 0 00 01223334444444432 245
Q ss_pred ceEEEccchhh
Q 000978 997 SVIFVDEVDSM 1007 (1203)
Q Consensus 997 sILfIDEID~L 1007 (1203)
.+||||-..+.
T Consensus 322 DvVLIDTaGRs 332 (436)
T PRK11889 322 DYILIDTAGKN 332 (436)
T ss_pred CEEEEeCcccc
Confidence 78999977543
No 465
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.018 Score=67.97 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=32.4
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccc
Q 000978 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 470 (1203)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~ 470 (1203)
-|||-||.| -+++.||+-||+-+.+++-|-|.+.|
T Consensus 228 NvLllGPtG--sGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 228 NVLLLGPTG--SGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred cEEEECCCC--CchhHHHHHHHHHhCCCeEEecccch
Confidence 699999999 79999999999999999999998555
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.74 E-value=0.026 Score=63.54 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA 962 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~ 962 (1203)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 467
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.72 E-value=0.049 Score=56.20 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTM-LAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~-LArALA~eL 960 (1203)
..+++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555554
No 468
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.70 E-value=0.031 Score=69.87 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=62.4
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 972 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~s-eL 972 (1203)
..++++++-.....+.+++++.. +..-||++||+|+||||+..++.+.++ .+++.+.-+ ++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35678888888888888776642 224589999999999999888887773 345543221 22
Q ss_pred cc-----cccc-ccHHHHHHHHHHHHhcCCceEEEccch
Q 000978 973 TS-----KWFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 973 ~s-----~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
.- ..+. ........++..+.+..|.||++.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11 1111 111234566777788899999999995
No 469
>PRK04328 hypothetical protein; Provisional
Probab=95.70 E-value=0.092 Score=58.94 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
.+...+|++||||+|||+|+..++.+. |-+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 344669999999999999988876542 555555544
No 470
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.094 Score=62.20 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------
Q 000978 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS------- 974 (1203)
Q Consensus 905 Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s------- 974 (1203)
+.+.+...+.+.+...+..+..+. ..+..-++|.||+|+|||+++..+|..+ +..+..+++..+..
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk 254 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH
Confidence 345666666666655443322221 2344679999999999999999998766 55555555433211
Q ss_pred ---------ccccccHHHHHHHHHHHHh-cCCceEEEccchhh
Q 000978 975 ---------KWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSM 1007 (1203)
Q Consensus 975 ---------~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L 1007 (1203)
-+.......+......+.. ....+||||=....
T Consensus 255 ~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 255 GYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 0111222333444443331 23578999877543
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.67 E-value=0.1 Score=57.16 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+..-++|.|+||+|||+++..++... +-++++++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34669999999999999999887543 6677777653
No 472
>PRK13946 shikimate kinase; Provisional
Probab=95.66 E-value=0.0093 Score=63.62 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
+.|+|.|.+|+|||++++.||+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998776
No 473
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.65 E-value=0.025 Score=65.47 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=67.1
Q ss_pred CCCCceeeeeccCCCCcceeeccCCCCCCCC-CC---CCCCCCc-ccccccccccccCCCcchhHHHHHHHHHHHHhhhc
Q 000978 580 GTRGKVALLFEDNPSSKIGVRFDKPIPDGVD-LG---GQCEGGH-GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 654 (1203)
Q Consensus 580 g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~-l~---~~c~~~~-~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~ 654 (1203)
|+.|.+.-..|-|.-. -.+|=+|||+||| || ...+..+ -||..-.|-. .=+.| ++.+||-...+-
T Consensus 148 ~q~gllrs~ieq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--a~t~d------vR~ife~aq~~~ 217 (554)
T KOG2028|consen 148 GQDGLLRSLIEQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--AKTND------VRDIFEQAQNEK 217 (554)
T ss_pred CcchHHHHHHHcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--cchHH------HHHHHHHHHHHH
Confidence 4455554445533221 2689999999999 43 3333333 3454433321 11223 677777775543
Q ss_pred c--CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCC
Q 000978 655 R--SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDN 702 (1203)
Q Consensus 655 ~--~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~ 702 (1203)
. ....||||||||.+=.-++|. |-++.+. |-|++||+||-.++
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~---fLP~VE~--G~I~lIGATTENPS 262 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDT---FLPHVEN--GDITLIGATTENPS 262 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhc---ccceecc--CceEEEecccCCCc
Confidence 2 567899999999965555554 4566665 99999999996653
No 474
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.64 E-value=0.13 Score=65.44 Aligned_cols=154 Identities=22% Similarity=0.271 Sum_probs=86.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccc-------c-------cccc---ccc-------------HHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-------T-------SKWF---GEG-------------EKYV 984 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL--g~~fi~I~~seL-------~-------s~~~---G~~-------------e~~I 984 (1203)
+=+||.-|.|.|||+++...+..+ +..+..+++.+- . +.+. +.. +..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999998644 556666655431 1 1111 111 1234
Q ss_pred HHHHHH-HHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc
Q 000978 985 KAVFSL-ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP 1063 (1203)
Q Consensus 985 ~~lF~~-A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd 1063 (1203)
..+|.+ +....|.+++|||.+.+- ++..+..+ .-|+.. . +.++.+|.||...-.+.-+-+|-=+
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l----~fLl~~---~----P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEAL----RFLLKH---A----PENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHH----HHHHHh---C----CCCeEEEEEeccCCCCcccceeehh
Confidence 555554 445578999999999772 22333333 333322 1 3566666666432211111111001
Q ss_pred ccccCC----CCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcH
Q 000978 1064 RRLMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1064 ~~I~v~----~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg 1107 (1203)
..++++ ..+.++-.++|...... . .+..++..|...++|+..
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~l-~-Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGSL-P-LDAADLKALYDRTEGWAA 228 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCCC-C-CChHHHHHHHhhcccHHH
Confidence 223332 24778888888765421 1 245678888888888764
No 475
>PRK14528 adenylate kinase; Provisional
Probab=95.63 E-value=0.011 Score=63.39 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
+.|++.||||+|||++|+.+|..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877554
No 476
>PRK06547 hypothetical protein; Provisional
Probab=95.62 E-value=0.012 Score=62.56 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
++.-|+|.|++|+|||++|+.|++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467999999999999999999999988776553
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.62 E-value=0.012 Score=61.97 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
.-|+|.||||+||||+++.|+..+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 368999999999999999999999866544
No 478
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.61 E-value=0.011 Score=62.43 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
..|+|.|++|+|||++++.+|..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999877764
No 479
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.61 E-value=0.02 Score=67.03 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccccc-----------cc--ccccHHHHHHHHHHHHhcCCceEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVIF 1000 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~-~seL~s-----------~~--~G~~e~~I~~lF~~A~k~~PsILf 1000 (1203)
.+||++|++|+|||+++++++.... ..++.+. ..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5799999999999999999998874 2333331 122210 00 111122356788888999999999
Q ss_pred Eccch
Q 000978 1001 VDEVD 1005 (1203)
Q Consensus 1001 IDEID 1005 (1203)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99995
No 480
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.61 E-value=0.082 Score=57.17 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVA 957 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA 957 (1203)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.61 E-value=0.026 Score=60.30 Aligned_cols=69 Identities=32% Similarity=0.503 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc---ccc----------cccHHHHHHHHHHHHhcCCceEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVIF 1000 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~s-eL~s---~~~----------G~~e~~I~~lF~~A~k~~PsILf 1000 (1203)
..++|.||+|+|||+++++++..+. ...+.+.-. ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998773 223332211 1100 000 11123356677777888999999
Q ss_pred Eccch
Q 000978 1001 VDEVD 1005 (1203)
Q Consensus 1001 IDEID 1005 (1203)
+.||-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 482
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.11 Score=66.10 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhc-cCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 000978 643 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1203)
Q Consensus 643 i~~L~ev~~~~~-~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~ 721 (1203)
|+.|.+.+.... ....-|++|||+|.+- .++.+.|-..|+..++.+++|.+++.++.
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT---~~A~NALLKtLEEPP~~tifILaTte~~K------------------- 160 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLS---KSAFNALLKTLEEPPKHVIFILATTEVHK------------------- 160 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCC---HHHHHHHHHHhhcCCCceEEEEEcCChhh-------------------
Confidence 555555544311 1334599999999743 34677888889998999999999875541
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 722 ~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+...|..|. +.|++..|..++....+...+.
T Consensus 161 ------------------------Ll~TI~SRc-q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 161 ------------------------IPLTILSRV-QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred ------------------------hhHHHHhhc-eeEEccCCCHHHHHHHHHHHHH
Confidence 455677778 7999999998888887775443
No 483
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.11 Score=64.11 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred CeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccC
Q 000978 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHT 700 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~ 700 (1203)
--|++|||+|.+- .+..+.|-..|+..+..+++|.+||..
T Consensus 120 ~kV~iIDE~~~ls---~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 120 FKVYLIDEVHMLS---GHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cEEEEEEChHhcC---HHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 3599999999743 355677778999989999999998744
No 484
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.17 Score=61.84 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
...-||+|||+|.+- .+..+.|-..|+..++.+++|.+++...
T Consensus 120 ~~~kvvIIdead~lt---~~~~n~LLk~lEep~~~~~~Il~t~~~~---------------------------------- 162 (451)
T PRK06305 120 SRYKIYIIDEVHMLT---KEAFNSLLKTLEEPPQHVKFFLATTEIH---------------------------------- 162 (451)
T ss_pred CCCEEEEEecHHhhC---HHHHHHHHHHhhcCCCCceEEEEeCChH----------------------------------
Confidence 466799999999853 3356677788888888999998886432
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
++.+.|..|+ ..|++..+++++-...+...+.
T Consensus 163 ---------kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 163 ---------KIPGTILSRC-QKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred ---------hcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 1456777888 7899999999887777765443
No 485
>PRK02496 adk adenylate kinase; Provisional
Probab=95.55 E-value=0.011 Score=62.65 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999998776654
No 486
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.55 E-value=0.1 Score=61.51 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..||+|++|||.-|||||+|.-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 5678999999999999999988776444
No 487
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.53 E-value=0.032 Score=57.60 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL 972 (1203)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 667777765433
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.53 E-value=0.22 Score=58.10 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
++.-++|.||+|+||||++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34679999999999999999999877 455555554
No 489
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.51 E-value=0.28 Score=56.03 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+++-++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678999999999999999998776 5566666554
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.046 Score=66.59 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
...-|+||||+|.+ +.++.+.|-..|+.-++++++|.+||....
T Consensus 120 g~~KV~IIDEah~L---s~~A~NALLKtLEEPp~~viFILaTte~~k--------------------------------- 163 (484)
T PRK14956 120 GKYKVYIIDEVHML---TDQSFNALLKTLEEPPAHIVFILATTEFHK--------------------------------- 163 (484)
T ss_pred CCCEEEEEechhhc---CHHHHHHHHHHhhcCCCceEEEeecCChhh---------------------------------
Confidence 45679999999985 345677777888888899999999997542
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
+...|..|. +.|.+..+..+.-.+.++..+
T Consensus 164 ----------I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 164 ----------IPETILSRC-QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred ----------ccHHHHhhh-heeeecCCCHHHHHHHHHHHH
Confidence 345566677 788888888776666666444
No 491
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.49 E-value=0.59 Score=53.77 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg------~~fi~I~~ 969 (1203)
.++..|.|+|+=|+|||++.+.+-+.+. ..++++++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 3457899999999999999999988873 33555554
No 492
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.47 E-value=0.012 Score=64.05 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
|+|+||||+|||++|+.||..++++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998776653
No 493
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.47 E-value=0.013 Score=63.99 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+++||||+|||++|+.||..++++.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999998766653
No 494
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.46 E-value=0.02 Score=66.30 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
..+...|+|.|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345578999999999999999999999999999544
No 495
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.44 E-value=0.052 Score=56.91 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se 971 (1203)
+++.|+||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998776 66677777653
No 496
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.44 E-value=0.076 Score=64.60 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=54.9
Q ss_pred CeEEEEcchhhhhc---CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000978 658 PFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1203)
Q Consensus 658 p~Ilfiddi~~~l~---~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~ 734 (1203)
.-+|+||||+.+-+ .+.++++.|....+ .|..+||+++..+.. +.
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p~~------------------------------l~ 250 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAPQD------------------------------LK 250 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCHHH------------------------------Hh
Confidence 44899999997543 23466666665554 367777777654421 11
Q ss_pred cccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhhh
Q 000978 735 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 735 r~~~~~~~~~~~d~~l~rrFp--~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++.|..||. ..+.|..|+.+.|..|++...+.
T Consensus 251 ----------~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 251 ----------AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ----------hhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 15677888895 68888899999999999866543
No 497
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.43 E-value=0.036 Score=65.26 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 498
>PLN02200 adenylate kinase family protein
Probab=95.42 E-value=0.016 Score=64.61 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
+.-|+|.|+||+|||++|+.||..+|+. .+++.+++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4569999999999999999999999865 466666543
No 499
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.013 Score=61.32 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
|-+.|||||||||+|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999876
No 500
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.41 E-value=0.06 Score=69.24 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=57.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEeccc----cccccccccHHHHHHHHHHH----------HhcCCce
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 998 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL---g--~~fi~I~~se----L~s~~~G~~e~~I~~lF~~A----------~k~~PsI 998 (1203)
-++|.|+||||||++++++...+ + .+++.+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 59999999999999999997665 4 3444333221 11222233333344444311 1134579
Q ss_pred EEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCC
Q 000978 999 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1203)
Q Consensus 999 LfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1054 (1203)
|+|||+-.+- ..++..|+..+. .+.++++++-.+....+
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~~-----~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAALP-----DHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhCC-----CCCEEEEECccccccCC
Confidence 9999997661 223444444332 24678888877654333
Done!