Query 000978
Match_columns 1203
No_of_seqs 686 out of 3901
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.8E-65 9.6E-70 637.4 20.3 546 389-1190 199-764 (806)
2 1ypw_A Transitional endoplasmi 100.0 2E-44 7E-49 455.0 11.6 544 390-1190 200-764 (806)
3 4b4t_J 26S protease regulatory 100.0 3.5E-41 1.2E-45 391.4 25.8 251 895-1174 142-396 (405)
4 4b4t_H 26S protease regulatory 100.0 3.9E-40 1.3E-44 386.9 25.6 261 895-1185 203-467 (467)
5 4b4t_I 26S protease regulatory 100.0 2E-40 6.8E-45 386.2 22.7 251 895-1174 176-430 (437)
6 4b4t_M 26S protease regulatory 100.0 9.6E-40 3.3E-44 384.0 24.7 252 894-1174 174-429 (434)
7 4b4t_L 26S protease subunit RP 100.0 1.3E-39 4.6E-44 383.1 23.5 250 895-1173 175-428 (437)
8 4b4t_K 26S protease regulatory 100.0 2.5E-38 8.6E-43 371.6 25.3 248 895-1171 166-419 (428)
9 3cf2_A TER ATPase, transitiona 100.0 8.8E-38 3E-42 390.2 9.5 288 896-1196 199-488 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.8E-35 2.3E-39 331.8 29.1 289 896-1192 7-322 (322)
11 3eie_A Vacuolar protein sortin 100.0 2.1E-34 7.3E-39 326.9 24.1 292 896-1193 13-322 (322)
12 2qp9_X Vacuolar protein sortin 100.0 7E-34 2.4E-38 327.7 22.6 295 893-1193 43-355 (355)
13 2zan_A Vacuolar protein sortin 100.0 4.7E-33 1.6E-37 329.9 21.5 292 891-1192 124-444 (444)
14 3cf0_A Transitional endoplasmi 100.0 9.3E-33 3.2E-37 310.9 18.4 287 896-1188 10-300 (301)
15 3d8b_A Fidgetin-like protein 1 100.0 7.4E-32 2.5E-36 310.8 24.7 277 896-1191 79-356 (357)
16 2x8a_A Nuclear valosin-contain 100.0 7.3E-32 2.5E-36 300.5 20.0 260 896-1174 5-271 (274)
17 3hu3_A Transitional endoplasmi 100.0 1E-31 3.5E-36 321.7 18.7 281 898-1192 201-484 (489)
18 3b9p_A CG5977-PA, isoform A; A 100.0 5.6E-31 1.9E-35 293.7 19.2 278 895-1191 15-294 (297)
19 3vfd_A Spastin; ATPase, microt 100.0 3.1E-30 1.1E-34 300.1 20.7 277 896-1191 110-387 (389)
20 3h4m_A Proteasome-activating n 100.0 2.9E-29 9.9E-34 277.9 24.5 267 897-1192 13-283 (285)
21 2ce7_A Cell division protein F 100.0 4.5E-29 1.5E-33 297.4 24.0 265 895-1189 10-282 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 5.2E-28 1.8E-32 264.7 24.4 246 895-1170 6-255 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.8E-28 9.7E-33 265.7 17.3 248 897-1174 2-256 (262)
24 3pxi_A Negative regulator of g 100.0 4.6E-27 1.6E-31 295.6 26.3 401 643-1124 256-727 (758)
25 2dhr_A FTSH; AAA+ protein, hex 99.9 2.4E-27 8.4E-32 283.9 17.9 264 896-1189 26-297 (499)
26 1r6b_X CLPA protein; AAA+, N-t 99.9 2E-26 6.9E-31 289.5 24.9 391 642-1124 266-718 (758)
27 1qvr_A CLPB protein; coiled co 99.9 2.5E-25 8.6E-30 283.2 29.7 414 642-1125 250-823 (854)
28 1ixz_A ATP-dependent metallopr 99.9 8.8E-26 3E-30 246.6 22.0 241 894-1164 9-253 (254)
29 4b4t_J 26S protease regulatory 99.9 1.8E-26 6E-31 268.3 14.4 233 389-859 143-389 (405)
30 2r62_A Cell division protease 99.9 3.3E-28 1.1E-32 267.3 -0.4 253 893-1174 3-260 (268)
31 4b4t_I 26S protease regulatory 99.9 8.3E-26 2.9E-30 263.5 15.3 235 387-858 175-422 (437)
32 1iy2_A ATP-dependent metallopr 99.9 1.7E-24 5.9E-29 240.1 24.9 239 896-1164 35-277 (278)
33 4b4t_M 26S protease regulatory 99.9 3.1E-25 1.1E-29 261.0 14.0 215 386-815 173-400 (434)
34 1ypw_A Transitional endoplasmi 99.9 1.6E-25 5.4E-30 283.0 11.9 287 896-1195 199-487 (806)
35 4b4t_L 26S protease subunit RP 99.9 6.2E-25 2.1E-29 258.7 13.5 234 388-859 175-422 (437)
36 4b4t_H 26S protease regulatory 99.9 2.6E-24 8.8E-29 253.1 17.0 234 388-859 203-450 (467)
37 4b4t_K 26S protease regulatory 99.9 7E-24 2.4E-28 249.3 13.6 213 387-815 165-392 (428)
38 3t15_A Ribulose bisphosphate c 99.9 8.3E-22 2.8E-26 221.2 12.1 175 933-1113 33-223 (293)
39 1gxc_A CHK2, CDS1, serine/thre 99.8 8.6E-20 2.9E-24 185.9 12.1 112 121-232 24-145 (149)
40 3syl_A Protein CBBX; photosynt 99.8 1.3E-18 4.4E-23 194.4 15.6 215 902-1127 32-268 (309)
41 2c9o_A RUVB-like 1; hexameric 99.8 1.2E-20 4E-25 224.3 -6.6 202 896-1116 32-262 (456)
42 3uk6_A RUVB-like 2; hexameric 99.7 5.8E-17 2E-21 185.5 22.2 219 897-1167 40-330 (368)
43 1lgp_A Cell cycle checkpoint p 99.7 2.7E-18 9.1E-23 167.5 9.1 106 125-232 2-115 (116)
44 1ofh_A ATP-dependent HSL prote 99.7 8.6E-18 3E-22 186.9 13.7 247 902-1168 16-300 (310)
45 1xwi_A SKD1 protein; VPS4B, AA 99.7 5E-17 1.7E-21 184.9 18.1 213 387-816 5-229 (322)
46 3pfi_A Holliday junction ATP-d 99.7 3E-16 1E-20 177.9 21.2 193 898-1120 26-233 (338)
47 2x8a_A Nuclear valosin-contain 99.7 3.7E-17 1.3E-21 182.0 13.5 216 389-815 5-231 (274)
48 1d2n_A N-ethylmaleimide-sensit 99.7 2.6E-16 8.9E-21 173.5 15.1 177 934-1119 62-247 (272)
49 3m6a_A ATP-dependent protease 99.7 1.1E-16 3.6E-21 194.4 11.5 230 900-1167 80-341 (543)
50 3hws_A ATP-dependent CLP prote 99.7 1.8E-16 6.1E-21 182.5 12.3 221 903-1123 17-324 (363)
51 3eie_A Vacuolar protein sortin 99.7 6.2E-16 2.1E-20 175.4 16.5 213 387-816 11-234 (322)
52 2qp9_X Vacuolar protein sortin 99.7 4.6E-16 1.6E-20 179.2 15.0 222 377-816 35-267 (355)
53 2zan_A Vacuolar protein sortin 99.6 6.6E-16 2.3E-20 183.1 13.8 224 375-816 116-351 (444)
54 2c9o_A RUVB-like 1; hexameric 99.6 1.8E-15 6.2E-20 179.7 16.4 127 997-1167 297-437 (456)
55 1hqc_A RUVB; extended AAA-ATPa 99.6 2.2E-15 7.6E-20 169.1 16.0 201 898-1120 9-217 (324)
56 3cf0_A Transitional endoplasmi 99.6 5.5E-16 1.9E-20 174.3 10.8 214 388-817 9-236 (301)
57 2z4s_A Chromosomal replication 99.6 1.2E-14 4.2E-19 172.1 21.3 220 897-1169 101-334 (440)
58 2chg_A Replication factor C sm 99.6 3.6E-14 1.2E-18 148.1 22.5 199 898-1165 14-224 (226)
59 2v1u_A Cell division control p 99.6 2.7E-14 9.3E-19 162.9 23.0 224 900-1169 18-278 (387)
60 1g41_A Heat shock protein HSLU 99.6 1.2E-14 4.2E-19 171.4 20.6 180 902-1081 16-346 (444)
61 2jqj_A DNA damage response pro 99.6 1.5E-15 5.2E-20 154.9 10.5 106 121-229 12-123 (151)
62 3hu3_A Transitional endoplasmi 99.6 7.3E-15 2.5E-19 176.1 17.2 209 390-813 200-418 (489)
63 3bos_A Putative DNA replicatio 99.6 5.3E-14 1.8E-18 149.8 21.3 204 898-1165 25-241 (242)
64 1g6g_A Protein kinase RAD53; b 99.6 3.8E-15 1.3E-19 147.7 11.3 101 125-228 3-120 (127)
65 1njg_A DNA polymerase III subu 99.6 5.6E-14 1.9E-18 148.1 20.9 184 898-1118 20-232 (250)
66 4h87_A Kanadaptin; FHA domain 99.6 4.1E-15 1.4E-19 148.2 11.4 87 139-226 34-129 (130)
67 4fcw_A Chaperone protein CLPB; 99.6 6.1E-15 2.1E-19 164.6 14.2 208 902-1126 18-283 (311)
68 3i6u_A CDS1, serine/threonine- 99.6 2.4E-15 8.3E-20 176.1 11.3 109 123-231 6-124 (419)
69 1l8q_A Chromosomal replication 99.6 8.2E-14 2.8E-18 157.4 23.0 196 897-1120 7-214 (324)
70 2r44_A Uncharacterized protein 99.6 2.7E-14 9.2E-19 161.7 17.5 164 900-1086 26-200 (331)
71 3pvs_A Replication-associated 99.6 3.2E-14 1.1E-18 168.8 18.4 208 898-1170 23-247 (447)
72 1g8p_A Magnesium-chelatase 38 99.6 3.5E-14 1.2E-18 160.9 17.5 167 897-1084 20-232 (350)
73 1jbk_A CLPB protein; beta barr 99.6 4.5E-15 1.5E-19 151.4 8.9 157 899-1080 20-194 (195)
74 2qby_B CDC6 homolog 3, cell di 99.6 6.7E-14 2.3E-18 160.4 19.5 192 901-1119 20-250 (384)
75 3d8b_A Fidgetin-like protein 1 99.5 5.1E-14 1.8E-18 162.1 17.4 221 377-815 68-300 (357)
76 1r6b_X CLPA protein; AAA+, N-t 99.5 3.8E-14 1.3E-18 178.2 17.2 224 899-1168 184-434 (758)
77 2qz4_A Paraplegin; AAA+, SPG7, 99.5 8E-14 2.7E-18 151.5 17.2 73 390-470 2-75 (262)
78 3pxg_A Negative regulator of g 99.5 2.6E-14 8.8E-19 170.5 14.2 181 899-1119 178-383 (468)
79 1um8_A ATP-dependent CLP prote 99.5 4.3E-14 1.5E-18 163.3 15.3 222 902-1123 22-341 (376)
80 3u61_B DNA polymerase accessor 99.5 7.2E-14 2.5E-18 157.5 16.7 183 898-1117 23-219 (324)
81 1lv7_A FTSH; alpha/beta domain 99.5 3.1E-13 1.1E-17 147.6 19.6 76 385-468 3-79 (257)
82 3h4m_A Proteasome-activating n 99.5 1.7E-13 5.7E-18 151.4 17.3 236 388-860 11-259 (285)
83 2ce7_A Cell division protein F 99.5 1.3E-13 4.3E-18 164.7 17.4 215 382-813 3-232 (476)
84 2qby_A CDC6 homolog 1, cell di 99.5 4.3E-13 1.5E-17 152.7 20.7 202 898-1121 17-252 (386)
85 3b9p_A CG5977-PA, isoform A; A 99.5 3.2E-13 1.1E-17 150.3 18.6 222 376-815 4-238 (297)
86 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.4E-17 149.6 24.1 199 900-1121 16-254 (389)
87 1sxj_A Activator 1 95 kDa subu 99.5 7.5E-14 2.6E-18 168.4 14.1 195 898-1107 36-246 (516)
88 1sxj_D Activator 1 41 kDa subu 99.5 4E-13 1.4E-17 152.2 19.2 183 898-1118 34-239 (353)
89 3te6_A Regulatory protein SIR3 99.5 5.6E-13 1.9E-17 151.4 19.9 138 935-1087 44-214 (318)
90 1in4_A RUVB, holliday junction 99.5 1.9E-12 6.6E-17 147.6 24.2 194 899-1120 23-229 (334)
91 2pie_A E3 ubiquitin-protein li 99.5 1.1E-13 3.9E-18 139.0 11.2 104 121-228 4-117 (138)
92 1qvr_A CLPB protein; coiled co 99.5 1.3E-13 4.3E-18 175.9 14.3 197 899-1120 168-391 (854)
93 2p65_A Hypothetical protein PF 99.5 8.9E-14 3E-18 141.9 10.0 149 899-1072 20-187 (187)
94 1g3g_A Protien kinase SPK1; FH 99.5 1.9E-13 6.5E-18 141.3 12.2 106 124-232 30-152 (164)
95 1sxj_B Activator 1 37 kDa subu 99.5 1.4E-12 4.9E-17 145.4 19.6 183 898-1118 18-213 (323)
96 3vfd_A Spastin; ATPase, microt 99.5 4.1E-13 1.4E-17 156.1 15.6 88 377-472 99-186 (389)
97 3va4_A Mediator of DNA damage 99.5 1.8E-13 6.3E-18 136.6 10.6 105 119-228 16-126 (132)
98 2chq_A Replication factor C sm 99.4 7.4E-13 2.5E-17 147.4 16.6 187 898-1118 14-208 (319)
99 1jr3_A DNA polymerase III subu 99.4 1.9E-12 6.4E-17 147.8 19.7 184 898-1118 13-225 (373)
100 3pxi_A Negative regulator of g 99.4 3.2E-13 1.1E-17 170.0 14.5 182 899-1120 178-384 (758)
101 1qu5_A Protein kinase SPK1; FH 99.4 1.8E-13 6.2E-18 143.7 9.6 102 126-227 28-146 (182)
102 1iqp_A RFCS; clamp loader, ext 99.4 2.3E-12 8E-17 143.9 18.0 187 898-1118 22-216 (327)
103 1dmz_A Protein (protein kinase 99.4 5.8E-13 2E-17 136.9 9.6 90 137-226 17-121 (158)
104 1uht_A Expressed protein; FHA 99.4 7.7E-13 2.6E-17 129.3 9.4 97 125-225 10-111 (118)
105 2dhr_A FTSH; AAA+ protein, hex 99.4 1.3E-12 4.4E-17 156.8 13.3 122 643-812 112-246 (499)
106 3hx1_A SLR1951 protein; P74513 99.4 8.1E-13 2.8E-17 131.7 8.7 87 137-229 22-115 (131)
107 3els_A PRE-mRNA leakage protei 99.4 1.6E-12 5.5E-17 133.6 10.9 92 136-227 46-157 (158)
108 2r62_A Cell division protease 99.4 2.6E-13 8.9E-18 148.7 5.1 76 384-467 1-77 (268)
109 2bjv_A PSP operon transcriptio 99.4 3.6E-12 1.2E-16 139.7 14.1 193 898-1118 3-237 (265)
110 1sxj_E Activator 1 40 kDa subu 99.4 4.8E-12 1.7E-16 143.9 15.5 186 898-1118 11-241 (354)
111 2csw_A Ubiquitin ligase protei 99.3 1.1E-12 3.9E-17 132.9 8.4 91 124-218 15-111 (145)
112 3f9v_A Minichromosome maintena 99.3 2.4E-13 8.3E-18 166.7 3.7 173 902-1086 296-492 (595)
113 3po8_A RV0020C protein, putati 99.3 4.3E-12 1.5E-16 120.4 9.6 81 136-226 14-95 (100)
114 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.8E-12 6.1E-17 155.7 7.9 161 902-1084 23-196 (500)
115 1r21_A Antigen KI-67; beta san 99.3 2E-12 7E-17 128.1 7.0 95 125-228 10-108 (128)
116 3t15_A Ribulose bisphosphate c 99.3 5.9E-12 2E-16 141.2 11.5 117 642-809 83-223 (293)
117 2xt9_B Putative signal transdu 99.3 1.1E-11 3.7E-16 120.8 11.0 83 136-228 22-105 (115)
118 3elv_A PRE-mRNA leakage protei 99.3 8.1E-12 2.8E-16 132.4 10.5 83 137-219 94-193 (205)
119 1ixz_A ATP-dependent metallopr 99.3 1.5E-11 5.2E-16 133.9 13.0 123 642-812 96-231 (254)
120 2kb3_A Oxoglutarate dehydrogen 99.3 1.3E-11 4.4E-16 124.9 11.2 82 137-228 58-140 (143)
121 2kfu_A RV1827 PThr 22; FHA dom 99.3 2.5E-11 8.4E-16 125.2 13.4 81 137-227 67-148 (162)
122 2jpe_A Nuclear inhibitor of pr 99.3 2.1E-12 7E-17 130.1 5.2 86 138-226 47-135 (140)
123 1ojl_A Transcriptional regulat 99.3 1.2E-11 4E-16 139.6 11.5 190 902-1119 3-233 (304)
124 1sxj_C Activator 1 40 kDa subu 99.2 1.3E-10 4.5E-15 132.2 19.4 172 898-1106 22-205 (340)
125 1a5t_A Delta prime, HOLB; zinc 99.2 3.2E-10 1.1E-14 129.2 21.3 174 904-1115 5-206 (334)
126 1mzk_A Kinase associated prote 99.2 2E-11 7E-16 122.8 9.1 85 139-228 21-119 (139)
127 3gqs_A Adenylate cyclase-like 99.2 3.7E-11 1.3E-15 115.3 10.3 82 138-227 17-101 (106)
128 4ejq_A Kinesin-like protein KI 99.2 3.9E-11 1.3E-15 122.8 11.0 82 142-227 58-143 (154)
129 3oun_A Putative uncharacterize 99.2 3.8E-11 1.3E-15 123.0 10.3 79 137-225 77-156 (157)
130 1iy2_A ATP-dependent metallopr 99.2 1.4E-10 4.8E-15 128.3 14.3 123 642-812 120-255 (278)
131 1wln_A Afadin; beta sandwich, 99.2 6.2E-11 2.1E-15 116.3 9.9 82 138-227 29-113 (120)
132 3n70_A Transport activator; si 99.1 7.9E-11 2.7E-15 118.2 8.9 124 902-1063 2-135 (145)
133 3fm8_A Kinesin-like protein KI 99.1 2E-10 6.8E-15 113.4 11.2 75 145-226 48-122 (124)
134 2ff4_A Probable regulatory pro 99.1 1E-10 3.5E-15 136.3 10.6 95 124-228 286-381 (388)
135 1w5s_A Origin recognition comp 99.1 1.2E-09 4.1E-14 126.1 18.8 205 901-1121 22-273 (412)
136 3co5_A Putative two-component 99.1 2.4E-11 8.1E-16 121.8 2.9 130 902-1069 5-140 (143)
137 2gno_A DNA polymerase III, gam 99.0 2.6E-09 8.9E-14 120.8 17.4 142 905-1084 1-152 (305)
138 3k1j_A LON protease, ATP-depen 99.0 6.9E-10 2.4E-14 136.4 13.5 222 898-1166 38-374 (604)
139 3vlf_B 26S protease regulatory 99.0 6.5E-10 2.2E-14 103.2 8.8 87 1072-1185 2-88 (88)
140 3cmw_A Protein RECA, recombina 99.0 5.8E-10 2E-14 148.7 10.5 153 895-1050 1014-1217(1706)
141 2krk_A 26S protease regulatory 98.9 9.5E-10 3.2E-14 101.8 7.1 78 1067-1170 7-84 (86)
142 3kw6_A 26S protease regulatory 98.9 1.6E-09 5.5E-14 98.0 8.2 75 1069-1169 1-75 (78)
143 3kt9_A Aprataxin; FHA domain, 98.9 4.9E-09 1.7E-13 99.8 10.9 94 127-225 4-98 (102)
144 2brf_A Bifunctional polynucleo 98.9 4.5E-09 1.5E-13 101.1 10.2 95 127-226 9-105 (110)
145 3pxg_A Negative regulator of g 98.9 5.8E-09 2E-13 124.4 11.6 136 643-837 256-391 (468)
146 1yj5_C 5' polynucleotide kinas 98.8 1.3E-08 4.5E-13 101.2 10.2 98 125-227 7-106 (143)
147 3aji_B S6C, proteasome (prosom 98.8 5.5E-09 1.9E-13 95.6 6.9 75 1072-1172 2-76 (83)
148 4akg_A Glutathione S-transfera 98.7 2.6E-08 9E-13 138.2 13.4 139 937-1086 1268-1433(2695)
149 1ny5_A Transcriptional regulat 98.7 2.9E-08 9.8E-13 115.7 11.6 132 937-1077 161-314 (387)
150 1ujx_A Polynucleotide kinase 3 98.7 9E-09 3.1E-13 100.2 5.6 97 125-226 14-112 (119)
151 4egx_A Kinesin-like protein KI 98.7 9.8E-08 3.3E-12 100.4 12.1 80 144-227 90-173 (184)
152 3f8t_A Predicted ATPase involv 98.7 9.6E-08 3.3E-12 112.9 13.2 153 903-1075 215-385 (506)
153 1g41_A Heat shock protein HSLU 98.6 7.9E-09 2.7E-13 122.2 3.0 82 385-471 5-87 (444)
154 3uv0_A Mutator 2, isoform B; F 98.6 6.3E-08 2.2E-12 90.9 7.7 69 137-213 12-82 (102)
155 3ec2_A DNA replication protein 98.6 5E-08 1.7E-12 100.5 7.6 97 898-1007 7-112 (180)
156 3syl_A Protein CBBX; photosynt 98.6 1E-07 3.5E-12 106.1 10.7 84 657-778 130-219 (309)
157 2kjq_A DNAA-related protein; s 98.6 1.4E-07 4.7E-12 95.6 10.0 105 936-1069 36-146 (149)
158 2fna_A Conserved hypothetical 98.5 9.8E-07 3.4E-11 99.1 16.9 186 898-1116 10-252 (357)
159 3dzd_A Transcriptional regulat 98.5 9.3E-08 3.2E-12 110.7 6.6 176 937-1128 153-353 (368)
160 3cmw_A Protein RECA, recombina 98.5 3.4E-07 1.2E-11 122.5 11.8 76 937-1012 1432-1526(1706)
161 2w58_A DNAI, primosome compone 98.5 2.8E-07 9.6E-12 96.4 8.8 69 937-1007 55-127 (202)
162 3huf_A DNA repair and telomere 98.5 3.8E-07 1.3E-11 101.9 10.1 87 138-226 14-112 (325)
163 2qen_A Walker-type ATPase; unk 98.4 5.5E-06 1.9E-10 92.8 19.5 189 899-1116 10-248 (350)
164 2dzn_B 26S protease regulatory 98.4 4.9E-08 1.7E-12 89.2 1.9 73 1074-1172 1-74 (82)
165 1ofh_A ATP-dependent HSL prote 98.4 6.5E-07 2.2E-11 99.1 11.0 82 386-471 6-87 (310)
166 1jbk_A CLPB protein; beta barr 98.4 9.2E-07 3.1E-11 89.6 10.7 88 642-772 102-194 (195)
167 4akg_A Glutathione S-transfera 98.3 2.1E-06 7.2E-11 119.6 14.3 133 937-1082 646-791 (2695)
168 2vhj_A Ntpase P4, P4; non- hyd 98.3 3.9E-07 1.3E-11 103.4 5.3 112 937-1057 124-241 (331)
169 1um8_A ATP-dependent CLP prote 98.3 1.4E-06 4.8E-11 100.4 9.5 67 402-470 27-108 (376)
170 1d2n_A N-ethylmaleimide-sensit 98.2 2.6E-06 8.8E-11 93.6 10.6 36 430-467 62-97 (272)
171 3hws_A ATP-dependent CLP prote 98.2 2.1E-06 7.3E-11 98.5 9.9 68 402-471 21-88 (363)
172 3m6a_A ATP-dependent protease 98.2 5.5E-06 1.9E-10 100.6 13.4 35 431-467 107-141 (543)
173 3pfi_A Holliday junction ATP-d 98.2 1.6E-05 5.4E-10 89.8 15.0 62 392-467 27-88 (338)
174 2r2a_A Uncharacterized protein 98.1 1.3E-06 4.5E-11 92.8 5.2 128 937-1074 6-156 (199)
175 2qgz_A Helicase loader, putati 98.1 1.4E-06 4.7E-11 98.5 5.3 70 936-1007 152-226 (308)
176 1sxj_A Activator 1 95 kDa subu 98.1 2.4E-05 8.3E-10 94.3 15.4 77 392-472 37-115 (516)
177 3u61_B DNA polymerase accessor 98.1 1.2E-05 4.2E-10 90.2 11.9 76 657-778 105-180 (324)
178 2p65_A Hypothetical protein PF 98.1 1.1E-05 3.7E-10 81.8 10.2 80 642-764 102-187 (187)
179 4a0e_A YSCD, type III secretio 98.1 6.7E-06 2.3E-10 80.5 8.2 76 136-218 15-91 (123)
180 1tue_A Replication protein E1; 98.0 1.7E-05 6E-10 84.6 9.7 29 937-965 59-87 (212)
181 2chg_A Replication factor C sm 97.9 0.00015 5.2E-09 74.9 15.9 75 656-777 101-175 (226)
182 3vkg_A Dynein heavy chain, cyt 97.9 3.4E-05 1.2E-09 108.4 12.1 140 937-1086 1305-1471(3245)
183 3vkg_A Dynein heavy chain, cyt 97.8 7.6E-05 2.6E-09 105.0 14.3 166 937-1118 605-797 (3245)
184 1u0j_A DNA replication protein 97.8 3.2E-05 1.1E-09 85.7 8.5 126 936-1083 104-250 (267)
185 4fcw_A Chaperone protein CLPB; 97.8 0.00014 4.6E-09 80.8 13.8 107 656-783 118-236 (311)
186 1hqc_A RUVB; extended AAA-ATPa 97.8 0.00014 4.7E-09 81.2 13.5 35 431-467 37-71 (324)
187 2r44_A Uncharacterized protein 97.8 0.00015 5.1E-09 81.7 13.6 33 433-467 47-79 (331)
188 2v1u_A Cell division control p 97.7 0.00033 1.1E-08 79.4 16.0 95 642-778 117-216 (387)
189 1jr3_D DNA polymerase III, del 97.7 0.00036 1.2E-08 79.1 15.8 154 937-1116 19-187 (343)
190 3pvs_A Replication-associated 97.7 0.00011 3.7E-09 87.3 11.7 76 656-778 105-180 (447)
191 3cmu_A Protein RECA, recombina 97.7 6E-05 2E-09 102.3 10.4 77 933-1009 1424-1519(2050)
192 3te6_A Regulatory protein SIR3 97.6 0.00035 1.2E-08 79.3 13.5 95 642-778 118-213 (318)
193 1ye8_A Protein THEP1, hypothet 97.6 0.00025 8.7E-09 73.7 11.4 28 938-965 2-29 (178)
194 2qby_B CDC6 homolog 3, cell di 97.6 0.0006 2E-08 77.7 15.3 89 642-777 122-211 (384)
195 3uk6_A RUVB-like 2; hexameric 97.6 0.00017 5.8E-09 82.1 10.0 85 658-778 190-274 (368)
196 1wv3_A Similar to DNA segregat 97.5 0.00016 5.4E-09 79.0 7.6 77 139-226 86-167 (238)
197 1njg_A DNA polymerase III subu 97.4 0.0019 6.5E-08 67.3 15.4 76 655-777 124-199 (250)
198 1l8q_A Chromosomal replication 97.4 0.00023 8E-09 80.0 8.5 38 431-470 36-76 (324)
199 1sxj_B Activator 1 37 kDa subu 97.4 0.0012 4E-08 73.2 13.3 75 656-777 106-180 (323)
200 3bos_A Putative DNA replicatio 97.3 0.0011 3.7E-08 69.9 12.1 26 432-459 52-77 (242)
201 2z4s_A Chromosomal replication 97.3 0.00019 6.5E-09 84.9 6.8 79 657-777 194-277 (440)
202 2qby_A CDC6 homolog 1, cell di 97.3 0.0037 1.3E-07 70.6 17.0 94 642-777 115-211 (386)
203 2chq_A Replication factor C sm 97.3 0.00036 1.2E-08 77.2 8.1 75 656-777 101-175 (319)
204 1g8p_A Magnesium-chelatase 38 97.3 0.00078 2.7E-08 75.8 11.0 52 390-460 20-71 (350)
205 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0019 6.5E-08 67.8 11.0 75 935-1009 22-137 (235)
206 1iqp_A RFCS; clamp loader, ext 97.1 0.0018 6.1E-08 71.8 11.4 74 656-776 109-182 (327)
207 1svm_A Large T antigen; AAA+ f 97.1 0.00023 7.9E-09 82.7 3.7 113 934-1068 167-282 (377)
208 1jr3_A DNA polymerase III subu 97.1 0.0039 1.3E-07 70.6 13.8 89 643-778 104-193 (373)
209 3hr8_A Protein RECA; alpha and 97.0 0.0022 7.4E-08 74.0 10.8 76 934-1009 59-153 (356)
210 1sxj_D Activator 1 41 kDa subu 97.0 0.0051 1.7E-07 69.1 13.8 73 657-776 133-205 (353)
211 2r8r_A Sensor protein; KDPD, P 97.0 0.0052 1.8E-07 66.5 12.8 159 937-1119 7-206 (228)
212 1xp8_A RECA protein, recombina 97.0 0.0027 9.2E-08 73.5 11.3 75 935-1009 73-166 (366)
213 1z6t_A APAF-1, apoptotic prote 96.9 0.0077 2.6E-07 73.0 15.7 174 900-1115 123-329 (591)
214 2bjv_A PSP operon transcriptio 96.9 0.0062 2.1E-07 66.2 13.1 37 432-470 29-68 (265)
215 2zr9_A Protein RECA, recombina 96.9 0.0035 1.2E-07 72.0 11.1 75 935-1009 60-153 (349)
216 1fnn_A CDC6P, cell division co 96.9 0.0053 1.8E-07 69.7 12.7 91 642-777 112-207 (389)
217 2cvh_A DNA repair and recombin 96.8 0.0038 1.3E-07 65.2 10.2 37 935-971 19-55 (220)
218 1qhx_A CPT, protein (chloramph 96.8 0.0016 5.5E-08 66.1 7.0 34 937-970 4-37 (178)
219 1n0w_A DNA repair protein RAD5 96.8 0.0026 8.9E-08 67.6 8.9 76 935-1010 23-134 (243)
220 2krk_A 26S protease regulatory 96.7 0.0006 2.1E-08 62.8 2.6 74 760-859 8-81 (86)
221 3kw6_A 26S protease regulatory 96.7 0.00078 2.7E-08 60.5 3.2 73 761-859 1-73 (78)
222 3trf_A Shikimate kinase, SK; a 96.7 0.00087 3E-08 68.7 3.8 32 937-968 6-37 (185)
223 1u94_A RECA protein, recombina 96.6 0.0076 2.6E-07 69.4 11.4 75 935-1009 62-155 (356)
224 3sfz_A APAF-1, apoptotic pepti 96.6 0.021 7.1E-07 74.6 17.0 174 901-1114 124-328 (1249)
225 3dm5_A SRP54, signal recogniti 96.6 0.031 1.1E-06 66.2 16.3 73 935-1007 99-194 (443)
226 2orw_A Thymidine kinase; TMTK, 96.5 0.0028 9.7E-08 66.0 6.3 30 938-967 5-37 (184)
227 3cmu_A Protein RECA, recombina 96.5 0.0042 1.4E-07 84.8 9.3 77 933-1009 729-824 (2050)
228 2dr3_A UPF0273 protein PH0284; 96.5 0.01 3.4E-07 63.1 10.5 36 935-970 22-60 (247)
229 2z43_A DNA repair and recombin 96.5 0.0048 1.6E-07 69.8 8.4 75 935-1009 106-217 (324)
230 1a5t_A Delta prime, HOLB; zinc 96.5 0.019 6.6E-07 65.0 13.4 86 643-775 93-179 (334)
231 2iut_A DNA translocase FTSK; n 96.4 0.017 5.9E-07 70.2 13.4 74 997-1081 345-420 (574)
232 2b8t_A Thymidine kinase; deoxy 96.4 0.011 3.9E-07 63.7 10.7 70 937-1007 13-101 (223)
233 3vaa_A Shikimate kinase, SK; s 96.4 0.0016 5.3E-08 68.1 3.8 33 936-968 25-57 (199)
234 2ehv_A Hypothetical protein PH 96.4 0.011 3.9E-07 62.8 10.4 35 935-969 29-67 (251)
235 1v5w_A DMC1, meiotic recombina 96.4 0.007 2.4E-07 69.2 9.0 75 935-1009 121-233 (343)
236 3kb2_A SPBC2 prophage-derived 96.4 0.0021 7.1E-08 64.5 4.1 31 938-968 3-33 (173)
237 2p5t_B PEZT; postsegregational 96.3 0.01 3.5E-07 64.5 9.6 38 935-972 31-68 (253)
238 1sxj_E Activator 1 40 kDa subu 96.3 0.039 1.3E-06 62.1 14.7 76 656-778 133-208 (354)
239 3kl4_A SRP54, signal recogniti 96.3 0.027 9.2E-07 66.5 13.4 73 935-1007 96-191 (433)
240 3io5_A Recombination and repai 96.2 0.0095 3.2E-07 67.6 8.9 73 938-1010 30-126 (333)
241 3iij_A Coilin-interacting nucl 96.2 0.0025 8.6E-08 65.1 3.7 31 937-967 12-42 (180)
242 2iyv_A Shikimate kinase, SK; t 96.2 0.0024 8.2E-08 65.4 3.4 31 938-968 4-34 (184)
243 1via_A Shikimate kinase; struc 96.2 0.0032 1.1E-07 64.1 4.3 29 938-966 6-34 (175)
244 2a5y_B CED-4; apoptosis; HET: 96.1 0.034 1.2E-06 67.3 14.0 169 904-1113 131-336 (549)
245 1gvn_B Zeta; postsegregational 96.1 0.014 4.7E-07 65.1 9.5 37 936-972 33-69 (287)
246 1ojl_A Transcriptional regulat 96.1 0.0043 1.5E-07 69.7 5.5 39 430-470 23-64 (304)
247 1zuh_A Shikimate kinase; alpha 96.1 0.0028 9.5E-08 64.0 3.6 31 937-967 8-38 (168)
248 2rhm_A Putative kinase; P-loop 96.1 0.0044 1.5E-07 63.5 5.0 31 937-967 6-36 (193)
249 3lda_A DNA repair protein RAD5 96.0 0.014 4.8E-07 68.3 9.4 77 934-1010 176-288 (400)
250 1y63_A LMAJ004144AAA protein; 96.0 0.0031 1.1E-07 65.1 3.3 32 937-968 11-43 (184)
251 2ius_A DNA translocase FTSK; n 96.0 0.048 1.6E-06 65.7 14.1 74 998-1082 300-375 (512)
252 3upu_A ATP-dependent DNA helic 96.0 0.012 4.1E-07 69.7 8.8 23 938-960 47-69 (459)
253 2ze6_A Isopentenyl transferase 96.0 0.0038 1.3E-07 68.2 4.1 32 938-969 3-34 (253)
254 4a74_A DNA repair and recombin 96.0 0.012 3.9E-07 61.9 7.7 36 935-970 24-68 (231)
255 1aky_A Adenylate kinase; ATP:A 96.0 0.0049 1.7E-07 65.1 4.9 32 936-967 4-35 (220)
256 1vma_A Cell division protein F 96.0 0.063 2.1E-06 60.5 14.1 71 935-1005 103-196 (306)
257 1kag_A SKI, shikimate kinase I 96.0 0.0046 1.6E-07 62.4 4.3 30 937-966 5-34 (173)
258 2i3b_A HCR-ntpase, human cance 95.9 0.025 8.4E-07 59.3 9.9 23 938-960 3-25 (189)
259 3lw7_A Adenylate kinase relate 95.9 0.0048 1.7E-07 61.4 4.2 29 938-967 3-31 (179)
260 1e6c_A Shikimate kinase; phosp 95.9 0.0052 1.8E-07 61.9 4.3 30 938-967 4-33 (173)
261 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.012 4.2E-07 64.2 7.6 36 937-972 5-43 (260)
262 1tev_A UMP-CMP kinase; ploop, 95.9 0.0058 2E-07 62.4 4.7 30 937-966 4-33 (196)
263 2cdn_A Adenylate kinase; phosp 95.9 0.0065 2.2E-07 63.2 5.1 31 937-967 21-51 (201)
264 2c95_A Adenylate kinase 1; tra 95.9 0.0061 2.1E-07 62.6 4.8 31 937-967 10-40 (196)
265 3e1s_A Exodeoxyribonuclease V, 95.8 0.0056 1.9E-07 74.8 5.0 97 937-1050 205-317 (574)
266 3jvv_A Twitching mobility prot 95.8 0.011 3.8E-07 68.1 7.1 69 937-1005 124-206 (356)
267 3f9v_A Minichromosome maintena 95.8 0.013 4.3E-07 72.0 7.9 27 433-461 328-354 (595)
268 3cm0_A Adenylate kinase; ATP-b 95.8 0.0058 2E-07 62.4 4.2 30 937-966 5-34 (186)
269 2pt5_A Shikimate kinase, SK; a 95.8 0.0049 1.7E-07 61.9 3.6 30 938-967 2-31 (168)
270 3bh0_A DNAB-like replicative h 95.7 0.065 2.2E-06 60.3 13.0 36 934-969 66-104 (315)
271 1pzn_A RAD51, DNA repair and r 95.7 0.022 7.7E-07 65.2 9.2 37 935-971 130-175 (349)
272 3t61_A Gluconokinase; PSI-biol 95.7 0.0081 2.8E-07 62.5 5.0 31 937-967 19-49 (202)
273 1in4_A RUVB, holliday junction 95.7 0.072 2.4E-06 60.3 13.2 29 433-463 52-80 (334)
274 2bwj_A Adenylate kinase 5; pho 95.7 0.0053 1.8E-07 63.2 3.5 31 937-967 13-43 (199)
275 1nlf_A Regulatory protein REPA 95.7 0.036 1.2E-06 60.9 10.4 25 936-960 30-54 (279)
276 1sxj_C Activator 1 40 kDa subu 95.7 0.037 1.3E-06 62.5 10.7 73 657-776 110-182 (340)
277 2vli_A Antibiotic resistance p 95.6 0.0054 1.8E-07 62.4 3.4 29 937-965 6-34 (183)
278 3dl0_A Adenylate kinase; phosp 95.6 0.0076 2.6E-07 63.3 4.6 30 938-967 2-31 (216)
279 1w5s_A Origin recognition comp 95.6 0.079 2.7E-06 60.6 13.4 94 642-777 125-229 (412)
280 3fb4_A Adenylate kinase; psych 95.6 0.0078 2.7E-07 63.2 4.5 30 938-967 2-31 (216)
281 2i1q_A DNA repair and recombin 95.6 0.015 5E-07 65.5 7.0 75 935-1009 97-218 (322)
282 1kht_A Adenylate kinase; phosp 95.6 0.0063 2.2E-07 62.0 3.6 25 937-961 4-28 (192)
283 1ak2_A Adenylate kinase isoenz 95.6 0.009 3.1E-07 64.0 4.9 31 937-967 17-47 (233)
284 1ly1_A Polynucleotide kinase; 95.6 0.0058 2E-07 61.7 3.2 28 937-964 3-31 (181)
285 1qf9_A UMP/CMP kinase, protein 95.6 0.0088 3E-07 61.0 4.6 31 937-967 7-37 (194)
286 3be4_A Adenylate kinase; malar 95.6 0.0077 2.6E-07 63.8 4.3 31 937-967 6-36 (217)
287 1knq_A Gluconate kinase; ALFA/ 95.5 0.01 3.5E-07 60.1 5.0 31 936-966 8-38 (175)
288 1zd8_A GTP:AMP phosphotransfer 95.5 0.0081 2.8E-07 63.9 4.4 31 937-967 8-38 (227)
289 3tlx_A Adenylate kinase 2; str 95.5 0.0095 3.2E-07 64.5 5.0 33 935-967 28-60 (243)
290 1zp6_A Hypothetical protein AT 95.5 0.0065 2.2E-07 62.3 3.5 37 936-972 9-45 (191)
291 1ukz_A Uridylate kinase; trans 95.5 0.007 2.4E-07 62.9 3.7 32 937-968 16-47 (203)
292 1cr0_A DNA primase/helicase; R 95.5 0.053 1.8E-06 59.9 11.1 35 935-969 34-72 (296)
293 2zts_A Putative uncharacterize 95.4 0.064 2.2E-06 56.8 10.8 36 934-969 28-67 (251)
294 2pbr_A DTMP kinase, thymidylat 95.4 0.012 4.1E-07 60.1 4.9 31 938-968 2-35 (195)
295 3sr0_A Adenylate kinase; phosp 95.4 0.01 3.5E-07 63.1 4.4 29 938-966 2-30 (206)
296 1g5t_A COB(I)alamin adenosyltr 95.3 0.11 3.8E-06 54.9 12.2 116 937-1068 29-177 (196)
297 2eyu_A Twitching motility prot 95.3 0.024 8.1E-07 62.4 7.4 71 935-1005 24-108 (261)
298 3umf_A Adenylate kinase; rossm 95.3 0.011 3.8E-07 63.5 4.6 34 937-972 30-63 (217)
299 2r6a_A DNAB helicase, replicat 95.3 0.061 2.1E-06 63.6 11.4 37 934-970 201-241 (454)
300 2q6t_A DNAB replication FORK h 95.3 0.079 2.7E-06 62.5 12.2 37 934-970 198-238 (444)
301 1zak_A Adenylate kinase; ATP:A 95.3 0.0095 3.2E-07 63.0 3.9 30 937-966 6-35 (222)
302 1e4v_A Adenylate kinase; trans 95.3 0.012 4.1E-07 62.0 4.6 30 938-967 2-31 (214)
303 4eun_A Thermoresistant glucoki 95.3 0.013 4.4E-07 61.1 4.8 30 936-965 29-58 (200)
304 2pez_A Bifunctional 3'-phospho 95.2 0.016 5.6E-07 59.0 5.4 34 937-970 6-42 (179)
305 3crm_A TRNA delta(2)-isopenten 95.2 0.027 9.4E-07 64.0 7.7 34 937-970 6-39 (323)
306 2fz4_A DNA repair protein RAD2 95.1 0.04 1.4E-06 59.4 8.2 33 938-970 110-142 (237)
307 2jaq_A Deoxyguanosine kinase; 95.1 0.013 4.3E-07 60.4 4.1 29 938-966 2-30 (205)
308 2xb4_A Adenylate kinase; ATP-b 95.0 0.015 5E-07 62.0 4.3 30 938-967 2-31 (223)
309 1nks_A Adenylate kinase; therm 95.0 0.0095 3.2E-07 60.7 2.7 32 938-969 3-37 (194)
310 1cke_A CK, MSSA, protein (cyti 95.0 0.015 5.2E-07 61.2 4.3 30 937-966 6-35 (227)
311 2z0h_A DTMP kinase, thymidylat 95.0 0.019 6.4E-07 58.9 4.9 31 939-969 3-36 (197)
312 3aji_B S6C, proteasome (prosom 95.0 0.011 3.9E-07 53.4 2.8 68 764-857 2-69 (83)
313 3vlf_B 26S protease regulatory 94.9 0.01 3.5E-07 54.7 2.5 70 764-859 2-71 (88)
314 2v54_A DTMP kinase, thymidylat 94.9 0.017 5.7E-07 59.7 4.3 33 937-969 5-38 (204)
315 2ewv_A Twitching motility prot 94.9 0.027 9.4E-07 65.1 6.5 71 935-1005 135-219 (372)
316 3b6e_A Interferon-induced heli 94.8 0.084 2.9E-06 54.5 9.5 24 937-960 49-72 (216)
317 2if2_A Dephospho-COA kinase; a 94.8 0.012 4.1E-07 61.1 3.0 30 938-968 3-32 (204)
318 3uie_A Adenylyl-sulfate kinase 94.8 0.027 9.3E-07 58.7 5.5 37 936-972 25-64 (200)
319 2ga8_A Hypothetical 39.9 kDa p 94.8 0.012 4E-07 67.8 2.9 30 937-966 25-54 (359)
320 1q57_A DNA primase/helicase; d 94.7 0.12 4.2E-06 61.7 11.8 36 935-970 241-280 (503)
321 3ake_A Cytidylate kinase; CMP 94.7 0.021 7.2E-07 59.1 4.5 31 938-968 4-34 (208)
322 2gxq_A Heat resistant RNA depe 94.7 0.11 3.7E-06 53.6 9.8 23 937-959 39-62 (207)
323 2plr_A DTMP kinase, probable t 94.6 0.031 1.1E-06 57.8 5.5 31 937-967 5-37 (213)
324 1p9r_A General secretion pathw 94.5 0.11 3.9E-06 61.0 10.6 93 898-1005 144-246 (418)
325 2bbw_A Adenylate kinase 4, AK4 94.5 0.025 8.5E-07 60.9 4.6 31 936-966 27-57 (246)
326 4gp7_A Metallophosphoesterase; 94.5 0.094 3.2E-06 53.4 8.7 19 937-955 10-28 (171)
327 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.7E-07 58.2 4.3 31 936-967 8-38 (203)
328 2wwf_A Thymidilate kinase, put 94.4 0.014 4.6E-07 60.9 2.1 27 937-963 11-37 (212)
329 3bgw_A DNAB-like replicative h 94.4 0.17 5.9E-06 59.8 11.8 37 934-970 195-234 (444)
330 1w36_D RECD, exodeoxyribonucle 94.4 0.07 2.4E-06 65.6 8.7 24 937-960 165-188 (608)
331 4e22_A Cytidylate kinase; P-lo 94.3 0.034 1.2E-06 60.5 5.2 30 937-966 28-57 (252)
332 3r20_A Cytidylate kinase; stru 94.3 0.03 1E-06 60.8 4.7 30 937-966 10-39 (233)
333 2grj_A Dephospho-COA kinase; T 94.3 0.02 7E-07 60.1 3.3 31 938-968 14-44 (192)
334 1jjv_A Dephospho-COA kinase; P 94.3 0.024 8.2E-07 59.0 3.8 28 938-966 4-31 (206)
335 2px0_A Flagellar biosynthesis 94.3 0.15 5.2E-06 57.0 10.5 36 935-970 104-143 (296)
336 3a8t_A Adenylate isopentenyltr 94.2 0.018 6.3E-07 65.8 3.0 34 937-970 41-74 (339)
337 1uj2_A Uridine-cytidine kinase 94.2 0.04 1.4E-06 59.7 5.4 38 937-974 23-68 (252)
338 3nwj_A ATSK2; P loop, shikimat 94.2 0.031 1.1E-06 61.2 4.6 32 937-968 49-80 (250)
339 1qde_A EIF4A, translation init 94.2 0.14 4.8E-06 53.6 9.6 61 897-960 13-76 (224)
340 1nn5_A Similar to deoxythymidy 94.1 0.017 5.8E-07 60.1 2.2 25 937-961 10-34 (215)
341 2yvu_A Probable adenylyl-sulfa 94.1 0.049 1.7E-06 55.8 5.5 36 935-970 12-50 (186)
342 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.04 1.4E-06 62.6 4.9 69 937-1005 172-250 (330)
343 3foz_A TRNA delta(2)-isopenten 93.7 0.042 1.4E-06 62.2 4.5 35 937-971 11-45 (316)
344 1q3t_A Cytidylate kinase; nucl 93.7 0.051 1.8E-06 58.1 5.0 30 937-966 17-46 (236)
345 1vht_A Dephospho-COA kinase; s 93.5 0.045 1.6E-06 57.5 4.2 30 937-967 5-34 (218)
346 1hv8_A Putative ATP-dependent 93.5 0.17 6E-06 56.2 9.2 63 898-960 6-68 (367)
347 2h92_A Cytidylate kinase; ross 93.5 0.052 1.8E-06 57.0 4.5 31 937-967 4-34 (219)
348 2qor_A Guanylate kinase; phosp 93.4 0.042 1.4E-06 57.4 3.6 25 937-961 13-37 (204)
349 3d3q_A TRNA delta(2)-isopenten 93.4 0.038 1.3E-06 63.2 3.5 33 937-969 8-40 (340)
350 2pl3_A Probable ATP-dependent 93.3 0.22 7.5E-06 52.7 9.1 52 898-953 25-79 (236)
351 2gno_A DNA polymerase III, gam 93.3 0.1 3.5E-06 58.7 6.8 124 598-776 20-152 (305)
352 2axn_A 6-phosphofructo-2-kinas 93.3 0.38 1.3E-05 58.0 12.2 36 937-972 36-74 (520)
353 4a1f_A DNAB helicase, replicat 93.2 0.18 6.3E-06 57.6 8.8 36 934-969 44-82 (338)
354 1ltq_A Polynucleotide kinase; 93.2 0.048 1.6E-06 60.2 3.8 30 937-966 3-33 (301)
355 3nbx_X ATPase RAVA; AAA+ ATPas 93.2 0.049 1.7E-06 65.4 4.2 30 747-776 166-196 (500)
356 1vt4_I APAF-1 related killer D 93.2 0.24 8.4E-06 64.1 10.6 43 904-959 131-173 (1221)
357 3fdi_A Uncharacterized protein 93.1 0.057 1.9E-06 56.9 4.1 29 938-966 8-36 (201)
358 2f6r_A COA synthase, bifunctio 93.1 0.045 1.5E-06 60.6 3.5 30 937-967 76-105 (281)
359 2yhs_A FTSY, cell division pro 93.1 0.63 2.2E-05 55.8 13.4 26 935-960 292-317 (503)
360 2qt1_A Nicotinamide riboside k 93.1 0.034 1.2E-06 58.0 2.3 31 936-966 21-52 (207)
361 3zvl_A Bifunctional polynucleo 93.0 0.067 2.3E-06 62.6 5.0 31 936-966 258-288 (416)
362 1m7g_A Adenylylsulfate kinase; 93.0 0.068 2.3E-06 56.1 4.5 35 937-971 26-64 (211)
363 2bdt_A BH3686; alpha-beta prot 93.0 0.06 2E-06 55.2 4.0 25 938-962 4-28 (189)
364 1vec_A ATP-dependent RNA helic 92.9 0.19 6.6E-06 51.7 7.8 18 937-954 41-58 (206)
365 2oap_1 GSPE-2, type II secreti 92.9 0.068 2.3E-06 64.4 4.9 69 937-1005 261-343 (511)
366 1tf7_A KAIC; homohexamer, hexa 92.9 0.32 1.1E-05 58.5 10.8 72 937-1008 282-384 (525)
367 3exa_A TRNA delta(2)-isopenten 92.8 0.049 1.7E-06 61.7 3.3 34 937-970 4-37 (322)
368 3llm_A ATP-dependent RNA helic 92.7 0.39 1.3E-05 51.2 9.9 21 937-957 77-97 (235)
369 3iuy_A Probable ATP-dependent 92.6 0.29 1E-05 51.5 8.8 17 937-953 58-74 (228)
370 1t6n_A Probable ATP-dependent 92.6 0.73 2.5E-05 48.0 11.8 59 898-959 14-74 (220)
371 2j41_A Guanylate kinase; GMP, 92.5 0.06 2.1E-06 55.5 3.3 24 937-960 7-30 (207)
372 3asz_A Uridine kinase; cytidin 92.4 0.07 2.4E-06 55.6 3.6 33 937-969 7-39 (211)
373 3eph_A TRNA isopentenyltransfe 92.4 0.076 2.6E-06 62.1 4.1 33 937-969 3-35 (409)
374 2w58_A DNAI, primosome compone 92.4 0.098 3.3E-06 54.1 4.6 83 375-468 6-91 (202)
375 1kgd_A CASK, peripheral plasma 92.3 0.078 2.7E-06 54.3 3.8 25 937-961 6-30 (180)
376 1w4r_A Thymidine kinase; type 92.3 0.1 3.5E-06 55.2 4.7 34 937-970 21-57 (195)
377 2xxa_A Signal recognition part 92.3 0.3 1E-05 57.7 9.2 72 934-1005 98-193 (433)
378 1j8m_F SRP54, signal recogniti 92.3 0.42 1.4E-05 53.5 10.0 71 936-1006 98-191 (297)
379 2j37_W Signal recognition part 92.2 0.29 1E-05 58.8 9.1 73 935-1007 100-195 (504)
380 3tau_A Guanylate kinase, GMP k 92.2 0.07 2.4E-06 56.1 3.3 25 937-961 9-33 (208)
381 2xau_A PRE-mRNA-splicing facto 92.2 0.38 1.3E-05 60.8 10.5 59 899-959 73-132 (773)
382 1zu4_A FTSY; GTPase, signal re 92.1 1.3 4.5E-05 50.0 13.9 35 935-969 104-141 (320)
383 1rz3_A Hypothetical protein rb 92.1 0.15 5E-06 53.3 5.6 35 937-971 23-60 (201)
384 3e70_C DPA, signal recognition 92.1 0.35 1.2E-05 55.0 9.1 26 935-960 128-153 (328)
385 3tr0_A Guanylate kinase, GMP k 92.0 0.095 3.2E-06 54.1 3.9 25 937-961 8-32 (205)
386 1ls1_A Signal recognition part 91.8 0.41 1.4E-05 53.4 9.1 73 935-1007 97-192 (295)
387 2qmh_A HPR kinase/phosphorylas 91.7 0.067 2.3E-06 56.9 2.4 33 936-969 34-66 (205)
388 4b3f_X DNA-binding protein smu 91.5 0.67 2.3E-05 57.2 11.4 49 904-968 189-240 (646)
389 3c8u_A Fructokinase; YP_612366 91.5 0.1 3.4E-06 54.7 3.5 27 935-961 21-47 (208)
390 1ex7_A Guanylate kinase; subst 91.5 0.13 4.5E-06 53.8 4.4 25 938-962 3-27 (186)
391 2ffh_A Protein (FFH); SRP54, s 91.5 0.66 2.2E-05 54.6 10.7 72 935-1006 97-191 (425)
392 1sky_E F1-ATPase, F1-ATP synth 91.4 0.34 1.2E-05 57.7 8.3 24 937-960 152-175 (473)
393 1xx6_A Thymidine kinase; NESG, 91.4 0.22 7.6E-06 52.3 6.0 69 937-1007 9-93 (191)
394 1lvg_A Guanylate kinase, GMP k 91.2 0.11 3.8E-06 54.2 3.5 25 937-961 5-29 (198)
395 3n70_A Transport activator; si 91.1 0.12 4E-06 51.2 3.4 40 430-472 22-64 (145)
396 2dzn_B 26S protease regulatory 91.1 0.017 5.9E-07 52.3 -2.4 46 766-815 1-46 (82)
397 2zj8_A DNA helicase, putative 91.1 0.8 2.7E-05 57.0 11.7 32 937-968 40-75 (720)
398 1x6v_B Bifunctional 3'-phospho 91.0 0.16 5.4E-06 62.7 5.1 34 937-970 53-89 (630)
399 1q0u_A Bstdead; DEAD protein, 91.0 0.36 1.2E-05 50.5 7.2 18 937-954 42-59 (219)
400 3a00_A Guanylate kinase, GMP k 90.9 0.12 4.2E-06 53.0 3.5 24 938-961 3-26 (186)
401 2v3c_C SRP54, signal recogniti 90.9 0.15 5.2E-06 60.1 4.7 35 936-970 99-136 (432)
402 1gtv_A TMK, thymidylate kinase 90.9 0.069 2.4E-06 55.5 1.6 24 938-961 2-25 (214)
403 3gmt_A Adenylate kinase; ssgci 90.9 0.16 5.5E-06 55.0 4.4 31 937-967 9-39 (230)
404 3hdt_A Putative kinase; struct 90.9 0.14 4.8E-06 55.1 3.9 30 937-966 15-44 (223)
405 3fe2_A Probable ATP-dependent 90.7 0.3 1E-05 52.1 6.4 55 896-953 27-83 (242)
406 1tf7_A KAIC; homohexamer, hexa 90.7 1.1 3.6E-05 54.0 11.9 35 935-969 38-76 (525)
407 3thx_B DNA mismatch repair pro 90.7 0.59 2E-05 60.1 10.1 22 937-958 674-695 (918)
408 3lxw_A GTPase IMAP family memb 90.6 0.41 1.4E-05 51.7 7.5 25 935-959 20-44 (247)
409 2oxc_A Probable ATP-dependent 90.6 0.68 2.3E-05 48.9 9.0 59 898-959 24-85 (230)
410 2va8_A SSO2462, SKI2-type heli 90.4 1 3.5E-05 55.9 11.8 57 898-956 8-66 (715)
411 1c9k_A COBU, adenosylcobinamid 90.2 0.16 5.4E-06 53.0 3.5 32 939-971 2-33 (180)
412 4eaq_A DTMP kinase, thymidylat 89.8 0.28 9.5E-06 52.6 5.2 31 937-967 27-59 (229)
413 3ice_A Transcription terminati 89.8 0.78 2.7E-05 53.5 9.1 24 937-960 175-198 (422)
414 2gza_A Type IV secretion syste 89.7 0.3 1E-05 56.0 5.7 69 937-1005 176-262 (361)
415 3ney_A 55 kDa erythrocyte memb 89.7 0.2 6.7E-06 53.0 3.8 25 937-961 20-44 (197)
416 3ber_A Probable ATP-dependent 89.6 0.59 2E-05 50.4 7.6 18 937-954 81-98 (249)
417 1a7j_A Phosphoribulokinase; tr 89.5 0.13 4.4E-06 57.4 2.3 37 937-973 6-45 (290)
418 1htw_A HI0065; nucleotide-bind 89.2 0.25 8.5E-06 50.2 4.0 24 937-960 34-57 (158)
419 1znw_A Guanylate kinase, GMP k 89.2 0.23 7.9E-06 51.9 3.9 25 937-961 21-45 (207)
420 2j9r_A Thymidine kinase; TK1, 89.2 1.1 3.7E-05 48.0 9.1 31 939-969 31-64 (214)
421 1z6g_A Guanylate kinase; struc 89.1 0.22 7.5E-06 52.8 3.7 24 937-960 24-47 (218)
422 3pey_A ATP-dependent RNA helic 89.1 1.5 5.2E-05 49.1 10.9 20 937-956 45-64 (395)
423 3lxx_A GTPase IMAP family memb 89.1 1.2 4.3E-05 47.1 9.6 23 937-959 30-52 (239)
424 3oiy_A Reverse gyrase helicase 89.0 0.58 2E-05 53.8 7.5 20 937-956 37-56 (414)
425 3h1t_A Type I site-specific re 89.0 0.51 1.7E-05 57.2 7.3 24 937-960 199-222 (590)
426 3b9q_A Chloroplast SRP recepto 88.9 0.35 1.2E-05 54.2 5.4 26 935-960 99-124 (302)
427 3p32_A Probable GTPase RV1496/ 88.9 0.84 2.9E-05 52.0 8.6 32 937-968 80-114 (355)
428 3tbk_A RIG-I helicase domain; 88.8 1.4 4.8E-05 52.0 10.8 24 937-960 20-43 (555)
429 2jeo_A Uridine-cytidine kinase 88.8 0.27 9.1E-06 52.9 4.2 27 937-963 26-52 (245)
430 1xjc_A MOBB protein homolog; s 88.8 0.43 1.5E-05 49.3 5.4 32 937-968 5-39 (169)
431 3fht_A ATP-dependent RNA helic 88.5 1 3.5E-05 51.0 9.0 56 897-953 24-81 (412)
432 2ged_A SR-beta, signal recogni 88.5 0.44 1.5E-05 48.2 5.3 26 935-960 47-72 (193)
433 3thx_A DNA mismatch repair pro 88.3 1.1 3.7E-05 57.8 9.8 22 937-958 663-684 (934)
434 1bif_A 6-phosphofructo-2-kinas 88.2 0.67 2.3E-05 54.9 7.5 32 937-968 40-74 (469)
435 2j0s_A ATP-dependent RNA helic 88.2 1.5 5E-05 50.0 10.1 58 897-957 36-95 (410)
436 3co5_A Putative two-component 88.2 0.052 1.8E-06 53.6 -1.8 35 431-468 26-60 (143)
437 3fmo_B ATP-dependent RNA helic 88.2 1.3 4.6E-05 49.1 9.4 53 897-952 91-147 (300)
438 1m8p_A Sulfate adenylyltransfe 88.1 0.33 1.1E-05 59.3 4.8 35 937-971 397-435 (573)
439 1r8s_A ADP-ribosylation factor 88.0 2.3 7.9E-05 41.3 10.1 23 938-960 2-24 (164)
440 1s96_A Guanylate kinase, GMP k 88.0 0.3 1E-05 52.2 3.8 25 937-961 17-41 (219)
441 2v9p_A Replication protein E1; 87.8 0.31 1.1E-05 54.9 4.0 30 935-964 125-154 (305)
442 1s2m_A Putative ATP-dependent 87.8 2.1 7.2E-05 48.4 11.0 57 898-957 21-79 (400)
443 3eiq_A Eukaryotic initiation f 87.8 0.94 3.2E-05 51.4 8.1 57 896-955 38-96 (414)
444 2fwr_A DNA repair protein RAD2 87.7 0.38 1.3E-05 56.4 4.9 33 938-970 110-142 (472)
445 4edh_A DTMP kinase, thymidylat 87.7 0.47 1.6E-05 50.5 5.1 32 937-968 7-41 (213)
446 1zd9_A ADP-ribosylation factor 87.7 1.5 5.2E-05 44.3 8.8 24 936-959 22-45 (188)
447 2ocp_A DGK, deoxyguanosine kin 87.7 0.36 1.2E-05 51.6 4.3 25 937-961 3-27 (241)
448 1p5z_B DCK, deoxycytidine kina 87.6 0.15 5.1E-06 55.4 1.2 30 936-965 24-54 (263)
449 3crm_A TRNA delta(2)-isopenten 87.6 0.33 1.1E-05 55.2 4.0 41 432-474 5-45 (323)
450 3tqf_A HPR(Ser) kinase; transf 87.5 0.4 1.4E-05 49.9 4.3 27 937-964 17-43 (181)
451 3k53_A Ferrous iron transport 87.4 0.57 2E-05 51.0 5.8 23 937-959 4-26 (271)
452 1wp9_A ATP-dependent RNA helic 87.4 1.8 6.3E-05 49.4 10.3 32 938-969 25-60 (494)
453 3pie_A 5'->3' exoribonuclease 87.4 0.43 1.5E-05 61.8 5.3 65 547-622 1062-1126(1155)
454 3dzd_A Transcriptional regulat 87.2 1 3.6E-05 51.7 8.0 42 429-472 149-192 (368)
455 1fuu_A Yeast initiation factor 87.2 0.9 3.1E-05 51.1 7.4 54 897-953 20-75 (394)
456 2og2_A Putative signal recogni 87.1 0.5 1.7E-05 54.4 5.3 26 935-960 156-181 (359)
457 1odf_A YGR205W, hypothetical 3 87.1 0.37 1.3E-05 53.7 4.1 37 936-972 31-73 (290)
458 3lnc_A Guanylate kinase, GMP k 87.1 0.22 7.6E-06 52.8 2.1 24 937-960 28-52 (231)
459 3trf_A Shikimate kinase, SK; a 86.9 0.32 1.1E-05 49.4 3.1 34 432-467 5-38 (185)
460 3kta_A Chromosome segregation 86.6 0.37 1.3E-05 48.8 3.4 25 937-961 27-51 (182)
461 1sq5_A Pantothenate kinase; P- 86.6 0.64 2.2E-05 52.0 5.6 25 937-961 81-105 (308)
462 3iby_A Ferrous iron transport 86.6 2.2 7.5E-05 46.4 9.8 23 937-959 2-24 (256)
463 3aez_A Pantothenate kinase; tr 86.5 0.4 1.4E-05 54.0 4.0 27 935-961 89-115 (312)
464 3def_A T7I23.11 protein; chlor 86.5 1.8 6E-05 46.9 8.9 24 937-960 37-60 (262)
465 3tqc_A Pantothenate kinase; bi 86.5 0.82 2.8E-05 51.8 6.4 36 936-971 92-132 (321)
466 1rj9_A FTSY, signal recognitio 86.4 0.43 1.5E-05 53.6 4.1 25 936-960 102-126 (304)
467 3dkp_A Probable ATP-dependent 86.4 1.5 5.1E-05 46.5 8.2 17 937-953 67-83 (245)
468 3foz_A TRNA delta(2)-isopenten 86.2 0.42 1.4E-05 54.1 3.8 41 432-474 10-50 (316)
469 3ly5_A ATP-dependent RNA helic 86.0 1 3.6E-05 48.8 6.8 18 937-954 92-109 (262)
470 3a8t_A Adenylate isopentenyltr 86.0 0.38 1.3E-05 54.9 3.4 39 434-474 42-80 (339)
471 3ec2_A DNA replication protein 85.9 0.58 2E-05 47.4 4.5 34 432-467 38-75 (180)
472 2p6r_A Afuhel308 helicase; pro 85.9 1.3 4.4E-05 55.0 8.4 32 937-968 41-75 (702)
473 1np6_A Molybdopterin-guanine d 85.5 0.45 1.5E-05 49.1 3.4 24 937-960 7-30 (174)
474 2dyk_A GTP-binding protein; GT 85.4 0.47 1.6E-05 46.1 3.4 23 937-959 2-24 (161)
475 1qhx_A CPT, protein (chloramph 85.4 0.52 1.8E-05 47.3 3.8 33 433-467 4-36 (178)
476 1fzq_A ADP-ribosylation factor 85.4 1.6 5.4E-05 44.1 7.4 24 936-959 16-39 (181)
477 3fmp_B ATP-dependent RNA helic 85.2 1.2 4.1E-05 52.3 7.3 53 898-953 92-148 (479)
478 2qm8_A GTPase/ATPase; G protei 85.1 1.7 5.6E-05 49.4 8.2 24 937-960 56-79 (337)
479 2wsm_A Hydrogenase expression/ 85.1 0.64 2.2E-05 48.3 4.5 25 937-961 31-55 (221)
480 4i1u_A Dephospho-COA kinase; s 85.1 0.45 1.5E-05 50.8 3.2 31 937-968 10-40 (210)
481 2orv_A Thymidine kinase; TP4A 85.0 1.8 6.1E-05 46.9 7.9 68 937-1007 20-102 (234)
482 3v9p_A DTMP kinase, thymidylat 85.0 0.59 2E-05 50.4 4.2 32 937-968 26-64 (227)
483 1nrj_B SR-beta, signal recogni 84.9 0.56 1.9E-05 48.6 3.8 24 937-960 13-36 (218)
484 2qgz_A Helicase loader, putati 84.8 0.61 2.1E-05 52.3 4.3 37 432-470 152-192 (308)
485 2gk6_A Regulator of nonsense t 84.7 0.78 2.7E-05 56.5 5.6 23 938-960 197-219 (624)
486 1wb9_A DNA mismatch repair pro 84.7 2.3 8E-05 53.9 10.0 24 936-959 607-630 (800)
487 3tmk_A Thymidylate kinase; pho 84.6 0.8 2.7E-05 48.9 5.0 31 937-967 6-36 (216)
488 2p67_A LAO/AO transport system 84.6 2.2 7.4E-05 48.4 8.8 25 936-960 56-80 (341)
489 2iyv_A Shikimate kinase, SK; t 84.6 0.48 1.7E-05 48.0 3.1 32 433-466 3-34 (184)
490 2e87_A Hypothetical protein PH 84.4 3.5 0.00012 46.8 10.5 25 935-959 166-190 (357)
491 1upt_A ARL1, ADP-ribosylation 84.4 0.68 2.3E-05 45.4 4.0 24 936-959 7-30 (171)
492 2f1r_A Molybdopterin-guanine d 84.3 0.42 1.4E-05 49.2 2.5 24 937-960 3-26 (171)
493 2f9l_A RAB11B, member RAS onco 84.2 0.53 1.8E-05 48.3 3.2 23 937-959 6-28 (199)
494 1g8f_A Sulfate adenylyltransfe 84.2 0.49 1.7E-05 57.0 3.3 26 937-962 396-421 (511)
495 1z2a_A RAS-related protein RAB 84.1 0.59 2E-05 45.7 3.4 23 937-959 6-28 (168)
496 2ze6_A Isopentenyl transferase 84.0 0.61 2.1E-05 50.6 3.7 36 434-471 3-38 (253)
497 1oix_A RAS-related protein RAB 84.0 0.52 1.8E-05 48.2 3.1 24 937-960 30-53 (191)
498 3tif_A Uncharacterized ABC tra 83.9 0.52 1.8E-05 50.8 3.1 24 937-960 32-55 (235)
499 2hf9_A Probable hydrogenase ni 83.9 1 3.5E-05 46.9 5.4 24 937-960 39-62 (226)
500 2db3_A ATP-dependent RNA helic 83.9 4.7 0.00016 46.9 11.5 53 897-952 55-109 (434)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.8e-65 Score=637.39 Aligned_cols=546 Identities=27% Similarity=0.439 Sum_probs=379.1
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
-+|+|++...+ ++.|..|.+.+..+|+|+++.+.. -...+++|||+|||| +++++||||+|++.|+.|+.++.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~--g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSC--CCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHHHhhc--CCCCCCeEEEECCCC--CCHHHHHHHHHHHhCCeEEEEEhH
Confidence 36899999998 999999999999999999985321 235678999999999 999999999999999999999874
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000978 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1203)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1203)
.|.+
T Consensus 273 ~l~s---------------------------------------------------------------------------- 276 (806)
T 3cf2_A 273 EIMS---------------------------------------------------------------------------- 276 (806)
T ss_dssp HHHS----------------------------------------------------------------------------
T ss_pred Hhhc----------------------------------------------------------------------------
Confidence 4433
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 000978 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1203)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1203)
T Consensus 277 -------------------------------------------------------------------------------- 276 (806)
T 3cf2_A 277 -------------------------------------------------------------------------------- 276 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC----CcchhhhHHHHH----hcC--CCcEEEEeeec
Q 000978 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRL----EKL--PDKVIVIGSHT 698 (1203)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~----~~~~~~~lk~~L----~~l--~g~V~vIGst~ 698 (1203)
+|+++ .+..++.+|+.+.. .+|+||||||||.++.. ..+....+...| +.+ .++|+|||+||
T Consensus 277 ---k~~ge--se~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 277 ---KLAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp ---SCTTH--HHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred ---ccchH--HHHHHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 23344 56678999999988 99999999999998752 223333333333 222 46899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 699 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 699 ~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+++..|++ |+|||| |+.+|+|++|+.++|.+||+.++..
T Consensus 349 ~~d~LD~A-------LrR~GR----------------------------------Fd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 349 RPNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp STTTSCTT-------TTSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred ChhhcCHH-------HhCCcc----------------------------------cceEEecCCCCHHHHHHHHHHHhcC
Confidence 99999999 899999 8899999999999999999988854
Q ss_pred hhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhc---CCCCC---ccccccccchhh
Q 000978 779 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQ---NPEAD---PDARLVLSCESI 852 (1203)
Q Consensus 779 ~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~---~~~p~---~~~kl~ls~~~l 852 (1203)
.....+++....+..++||.|+||..+|.++.+.. +.+.+.. ..... ......++.++|
T Consensus 388 ----~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A-----------~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df 452 (806)
T 3cf2_A 388 ----MKLADDVDLEQVANETHGHVGADLAALCSEAALQA-----------IRKKMDLIDLEDETIDAEVMNSLAVTMDDF 452 (806)
T ss_dssp ----SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHH-----------HHHHHHHGGGTCCCCSHHHHHHCEECTTHH
T ss_pred ----CCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHH-----------HHhccccccccccccchhhhccceeeHHHH
Confidence 44556777777888999999999999998765532 2221110 00000 112344555555
Q ss_pred hhhhhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCC
Q 000978 853 QYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL 932 (1203)
Q Consensus 853 ~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~ 932 (1203)
..++...+ + +. . .......+.++|++++|++++++.|++.+.+|+.+++.|.+.+.
T Consensus 453 ~~Al~~~~---p-------s~-------------~-r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~ 508 (806)
T 3cf2_A 453 RWALSQSN---P-------SA-------------L-RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 508 (806)
T ss_dssp HHHHSSSS---C-------CC-------------C-CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC
T ss_pred HHHHHhCC---C-------cc-------------c-ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC
Confidence 54443110 0 00 0 01112234689999999999999999999999999999988774
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCC
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1012 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1012 (1203)
+|+++||||||||||||++|+++|++++.+|+.++.++++++|+|++++.++.+|..|++.+||||||||||.|++.|.
T Consensus 509 -~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 509 -TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp -CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----
T ss_pred -CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccC
Confidence 5669999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1013 NP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1013 ~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
.. ..+....+++++||..|+++.. ..+|+||+|||+|+.||++++| ||++.|+|++|+.++|.+||+.++++..
T Consensus 588 ~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~ 665 (806)
T 3cf2_A 588 GNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp ----------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-
T ss_pred CCCCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC
Confidence 32 3345677899999999999865 4679999999999999999999 9999999999999999999999999888
Q ss_pred CCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1089 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1089 l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
+..+++++.||++|+||||+||.++|++|++.++++.++............. ...........++|+++||++|+++++
T Consensus 666 ~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~df~~al~~~~ 744 (806)
T 3cf2_A 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNP-SAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp -CCC----------------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC----
T ss_pred CCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCc-cccccccccccCccCHHHHHHHHHhCC
Confidence 8889999999999999999999999999999999998754422111100000 000011122346899999999999999
Q ss_pred ccccccccchhhhHHHHHHhcC
Q 000978 1169 ASVSSESVNMSELLQWNELYGE 1190 (1203)
Q Consensus 1169 pS~s~e~~~~~~~v~W~di~G~ 1190 (1203)
||++.+.. ..|.+|.+.++.
T Consensus 745 pSvs~~~l--~~y~~~~~~f~~ 764 (806)
T 3cf2_A 745 RSVSDNDI--RKYEMFAQTLQQ 764 (806)
T ss_dssp -------------CCCC-----
T ss_pred CCCCHHHH--HHHHHHHHHHhc
Confidence 99987743 456667666543
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2e-44 Score=454.97 Aligned_cols=544 Identities=26% Similarity=0.439 Sum_probs=375.4
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 000978 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1203)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1203)
.|+|+++-.+ +..+..|.+.+..+|+|+++.+.. -...+..|||+||+| +++++||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l--~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSS--CCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHHhc--CCCCCCeEEEECcCC--CCHHHHHHHHHHHcCCcEEEEEchH
Confidence 5889998887 899999999999999999885321 135567899999999 9999999999999999998888644
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 000978 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1203)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1203)
+.+.
T Consensus 274 l~~~---------------------------------------------------------------------------- 277 (806)
T 1ypw_A 274 IMSK---------------------------------------------------------------------------- 277 (806)
T ss_dssp HSSS----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4330
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 000978 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1203)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1203)
T Consensus 278 -------------------------------------------------------------------------------- 277 (806)
T 1ypw_A 278 -------------------------------------------------------------------------------- 277 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHHHHH----hcC--CCcEEEEeeecc
Q 000978 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL----EKL--PDKVIVIGSHTH 699 (1203)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~~~~~~lk~~L----~~l--~g~V~vIGst~~ 699 (1203)
|.++ ....+..+|+.+.. ..|.|||||||+.++... .+....+...| ..+ ..+|+||+++|.
T Consensus 278 ---~~g~--~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~ 349 (806)
T 1ypw_A 278 ---LAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp ---STTH--HHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSC
T ss_pred ---hhhh--HHHHHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCC
Confidence 0011 22346777777766 789999999999987632 22222233333 222 468999999999
Q ss_pred CCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhh
Q 000978 700 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 779 (1203)
Q Consensus 700 ~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~ 779 (1203)
++..+++ |+|+|| |.+.+.|.+|+.+.|+.||+.++++
T Consensus 350 ~~~ld~a-------l~r~gR----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~- 387 (806)
T 1ypw_A 350 PNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN- 387 (806)
T ss_dssp TTTSCTT-------TTSTTS----------------------------------SCEEECCCCCCHHHHHHHHHHTTTT-
T ss_pred chhcCHH-------Hhcccc----------------------------------cccccccCCCCHHHHHHHHHHHHhc-
Confidence 8876666 666666 8789999999999999999977654
Q ss_pred hhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCC-------ccccccccchhh
Q 000978 780 SETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-------PDARLVLSCESI 852 (1203)
Q Consensus 780 ~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~-------~~~kl~ls~~~l 852 (1203)
+....+......+..+.++.+.||..+|..+.. .++.+... ..... ......++.+++
T Consensus 388 ---~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~-----------~a~r~~~~-~i~~~~~~~~~~~~~~~~v~~~d~ 452 (806)
T 1ypw_A 388 ---MKLADDVDLEQVANETHGHVGADLAALCSEAAL-----------QAIRKKMD-LIDLEDETIDAEVMNSLAVTMDDF 452 (806)
T ss_dssp ---SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH-----------HHHHHTTT-TTSCHHHHCCHHHHTTCCCCTTHH
T ss_pred ---CCCcccchhHHHHHhhcCcchHHHHHHHHHHHH-----------HHHhhhcc-ccchhhhccchhhhhhhhhhhhhh
Confidence 333344555556667788999988877764322 11111100 00000 001111222222
Q ss_pred hhhhhHHHHHHHhhHhhhhcccccCCHHHHHHHHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCC
Q 000978 853 QYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL 932 (1203)
Q Consensus 853 ~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~ 932 (1203)
..++... ... ...........++|++++|++++++.|.+.+.+++.+++.|...++
T Consensus 453 ~~al~~~----------~~s--------------~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~ 508 (806)
T 1ypw_A 453 RWALSQS----------NPS--------------ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 508 (806)
T ss_dssp HHHHHHS----------CCC--------------CCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC
T ss_pred hcccccc----------Cch--------------hhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC
Confidence 2111100 000 0000112234688999999999999999999999999888876654
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCC
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1012 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1012 (1203)
.+..++||+||||||||+||+++|.+++.+|+.++++++.+.|+|+.+..++.+|..|+...|+||||||||.++..+.
T Consensus 509 -~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 509 -TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp -CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTT
T ss_pred -CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhcc
Confidence 4558899999999999999999999999999999999999999999999999999999999999999999999987775
Q ss_pred CC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1013 NP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1013 ~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
.. .......+++++|+..|+++.. ..+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++.+..
T Consensus 588 ~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~ 665 (806)
T 1ypw_A 588 GNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp TCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-
T ss_pred CCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC
Confidence 43 2345678999999999998754 4689999999999999999999 9999999999999999999999998887
Q ss_pred CCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1089 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1089 l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
+..+.++..|++.+.||+++||.++|+.|+..++++.++........... ..............+|+++||++|++.++
T Consensus 666 ~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 744 (806)
T 1ypw_A 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp ---CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC--
T ss_pred CCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cccccccccccccCccCHHHHHHHHHhCC
Confidence 77888899999999999999999999999999998865442211000000 00000001122346799999999999999
Q ss_pred ccccccccchhhhHHHHHHhcC
Q 000978 1169 ASVSSESVNMSELLQWNELYGE 1190 (1203)
Q Consensus 1169 pS~s~e~~~~~~~v~W~di~G~ 1190 (1203)
|+++.+ ....+.+|.+.++.
T Consensus 745 ~svs~~--~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 745 RSVSDN--DIRKYEMFAQTLQQ 764 (806)
T ss_dssp ----------------------
T ss_pred CCCCHH--HHHHHHHHHHHHHh
Confidence 999877 35668888887653
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-41 Score=391.44 Aligned_cols=251 Identities=33% Similarity=0.581 Sum_probs=229.6
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|+||+|++++++.|++.|.+|+.+|++|.+.++ +|++|||||||||||||+||+|+|++++.+|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 35799999999999999999999999999999998774 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|++++.++.+|..|+..+||||||||||.++++|... +......+++++||..||++.. ..+|+||||||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChh
Confidence 9999999999999999999999999999999999887543 2344567889999999999854 46899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||+.|+||||+||.++|++|++.++++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
....|+++||..|++++.+.....
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred --------------------CCCCcCHHHHHHHHHHHhCccccc
Confidence 224699999999999998765443
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-40 Score=386.89 Aligned_cols=261 Identities=33% Similarity=0.577 Sum_probs=229.0
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|+||+|++++++.|++.|.+|+.+|+.|.+.++ +|++|||||||||||||+||+|||++++.+|+.++++++++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 34799999999999999999999999999999998774 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|++++.++.+|..|+..+||||||||||.++..|... +......+++.++|..|++... ..+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999887543 3345567788899999998754 46899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||++|+||+|+||.+||++|++.++++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------ 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999988888999999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHH
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWN 1185 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~ 1185 (1203)
....++++||.+|++++.++..+.. ....+.+||
T Consensus 434 --------------------~~~~it~~Df~~Al~kV~~g~~k~s-~~~~y~~~n 467 (467)
T 4b4t_H 434 --------------------RRKVATEKDFLKAVDKVISGYKKFS-STSRYMQYN 467 (467)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------CCCccCHHHHHHHHHHHhcCcccch-hHHHHHhhC
Confidence 1246999999999999988765432 234577775
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=386.18 Aligned_cols=251 Identities=35% Similarity=0.618 Sum_probs=229.1
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ +|++|||||||||||||+||+|+|++++.+|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45799999999999999999999999999999998775 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc--hhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|+.++.++.+|..|+..+||||||||||.+++.|.... ......+++.+||..+|+... ..+++||||||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCChh
Confidence 99999999999999999999999999999999998875332 233556788899999998754 46799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..+++++.||..|+||||+||.+||++|++.++++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
....|+++||.+|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCccCHHHHHHHHHHHhCCCChh
Confidence 124699999999999998876655
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-40 Score=384.01 Aligned_cols=252 Identities=33% Similarity=0.571 Sum_probs=229.9
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ +|++|||||||||||||+||+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 345789999999999999999999999999999998775 5669999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc--hhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
++|+|++++.++.+|..|+..+||||||||||.++++|.... ......+++.+||..++++.. ..+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCc
Confidence 999999999999999999999999999999999998885432 234556788999999999865 4679999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||+.|+||||+||.++|++|++.++++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
....|+++||.+|++++.|+.++.
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------------CCCCcCHHHHHHHHHHHhCCCCcC
Confidence 124699999999999998875543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=383.05 Aligned_cols=250 Identities=38% Similarity=0.646 Sum_probs=227.7
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ +|++|||||||||||||+||+|+|++++++|+.++++++++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999999999999998774 56799999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|+++..++.+|..|+..+||||||||||.++++|... .......+++++||..|+++.. ..+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecCCch
Confidence 9999999999999999999999999999999999887543 2334567788999999999854 46799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 6999999999999999999999999988888999999999999999999999999999998874
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 1173 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~ 1173 (1203)
....|+++||.+|++++.++...
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC-
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhccCc
Confidence 22469999999999999887543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=371.65 Aligned_cols=248 Identities=35% Similarity=0.579 Sum_probs=224.7
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|+|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 34789999999999999999999999999999998775 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
+|+|+.+..++.+|..|+..+||||||||||.+++.|... .......+++++||..|+++.. ..+++||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999999887432 2234567889999999999854 46799999999999
Q ss_pred CCcHHHHh--cccccccCC-CCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVN-LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~-~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
.||++++| ||++.|+|+ +|+.++|..||+.++.+..+..+++++.||..|+||||+||.++|++|++.++++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
Confidence 99999999 999999995 8999999999999999998888999999999999999999999999999998874
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh-cccc
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV-CASV 1171 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v-~pS~ 1171 (1203)
....|+++||++|+..+ .++.
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~~ 419 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTDN 419 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHhhCccC
Confidence 12469999999999874 4443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.8e-38 Score=390.22 Aligned_cols=288 Identities=37% Similarity=0.599 Sum_probs=253.2
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
..++|+||+|++++++.|++.+.+|+.+|+.|...+. +|++|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4689999999999999999999999999999988774 566999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
|.|+.+..++.+|..|++++|+||||||||.|++++.... ....++++++|+..|+++.. ..+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998875433 34457889999999999854 46899999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1133 (1203)
Q Consensus 1056 ~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~ 1133 (1203)
++++| ||++.|+++.|+.++|.+||+.++.+..+..++++..||..|+||+++||.+||++|++.++++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc--
Confidence 99999 99999999999999999999999988888889999999999999999999999999999999886543211
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcccc
Q 000978 1134 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRK 1196 (1203)
Q Consensus 1134 ~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~Rk~ 1196 (1203)
... ...........|+++||..|++.+.|+..++.....|.+.|++++|++.+|+.
T Consensus 433 -----~~~--~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 433 -----EDE--TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp -----TCC--CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred -----ccc--ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH
Confidence 000 00000012246899999999999999999888888899999999999888764
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-35 Score=331.82 Aligned_cols=289 Identities=38% Similarity=0.659 Sum_probs=242.4
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 974 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-g~~fi~I~~seL~s 974 (1203)
+.++|+||+|++++++.|++.+.+|+.+++.|.. ...|+++|||+||||||||+||+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4689999999999999999999999999998863 25677999999999999999999999999 99999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1054 (1203)
.+.|..+..++.+|..++...|+||||||||.+.+.+... ......+++++|+..++++.. ...+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998776543 345667889999999998753 24789999999999999
Q ss_pred cHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1133 (1203)
Q Consensus 1055 d~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~ 1133 (1203)
+++++|||+..+++++|+.++|.+||+.++...... .+.++..|++.++||+++||..||++|++.++++.........
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999876654 6788999999999999999999999999999998653210000
Q ss_pred HHHHhcCC----------CCCCC---------------CCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHh
Q 000978 1134 AAAMAEGK----------PAPAL---------------SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 1188 (1203)
Q Consensus 1134 ~~a~~e~~----------~~~~~---------------~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~ 1188 (1203)
. ..... ..++. .......+|+++||.+|++.++||++.+ .+..+.+|++.|
T Consensus 243 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~ 318 (322)
T 1xwi_A 243 V--RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDF 318 (322)
T ss_dssp E--EEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTT
T ss_pred h--ccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHH
Confidence 0 00000 00000 0001235899999999999999999877 356799999999
Q ss_pred cCCC
Q 000978 1189 GEGG 1192 (1203)
Q Consensus 1189 G~~g 1192 (1203)
|.+|
T Consensus 319 ~~~~ 322 (322)
T 1xwi_A 319 GQEG 322 (322)
T ss_dssp CSCC
T ss_pred ccCC
Confidence 9876
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.1e-34 Score=326.95 Aligned_cols=292 Identities=38% Similarity=0.661 Sum_probs=236.8
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+.++|++++|++.+++.|++.+.+++.+++.|... ..|++++||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 46889999999999999999999999999888653 4667899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
+.|..+..++.+|..++...|+||||||||.|.+.+.. .......++.++++..++++.. ...+++||+|||.++.|+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999876633 2233456788888888888743 346899999999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 1134 (1203)
Q Consensus 1056 ~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~ 1134 (1203)
+++++||+..+++++|+.++|.+||+.++...... .+.++..|+.+++||+++||.++|+.|++.++++..+.......
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999877654 67889999999999999999999999999999986542100000
Q ss_pred -HHHhcC-CCCCCC---------------CCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCc
Q 000978 1135 -AAMAEG-KPAPAL---------------SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGS 1193 (1203)
Q Consensus 1135 -~a~~e~-~~~~~~---------------~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~ 1193 (1203)
...... ...++. ......++|+++||.+|++.++|+++.+ ....+.+|+..||.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 322 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 322 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT--HHHHHHHHHHHHC----
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhcCCCC
Confidence 000000 000000 0111236799999999999999999887 46689999999999873
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7e-34 Score=327.65 Aligned_cols=295 Identities=37% Similarity=0.649 Sum_probs=231.2
Q ss_pred CCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 893 ~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
.....++|++|+|++.+++.|++.+.+++.+++.|... ..++++|||+||||||||+||+++|++++.+|+.++++++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34456899999999999999999999999999988753 4677899999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.+.+.|..+..++.+|..++...|+||||||||.|.+.+.. .......++.++|+..++++.. ...+++||+|||.++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPW 198 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhcccc-cCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999876543 2345667888899999887643 246799999999999
Q ss_pred CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1053 ~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
.|++++++||+..+++++|+.++|.+||+.++...... .+.++..|++.++||+++||.+||++|++.++++.......
T Consensus 199 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~ 278 (355)
T 2qp9_X 199 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHF 278 (355)
T ss_dssp GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999877643 67889999999999999999999999999999886432100
Q ss_pred HHH--HHHhcCCCCCCC---------------CCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCc
Q 000978 1132 ERA--AAMAEGKPAPAL---------------SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGS 1193 (1203)
Q Consensus 1132 ~~~--~a~~e~~~~~~~---------------~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~ 1193 (1203)
... .........+.. ......++|+++||..|++.++||++.+. +..+.+|.+.||.+|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~--~~~~~~~~~~~~~~~~ 355 (355)
T 2qp9_X 279 KDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDD--LLKQEQFTRDFGQEGN 355 (355)
T ss_dssp EECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHH--HHHHHHHHHHTC----
T ss_pred hhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhccCCC
Confidence 000 000000000000 00112367999999999999999998773 5679999999998874
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.7e-33 Score=329.90 Aligned_cols=292 Identities=39% Similarity=0.664 Sum_probs=234.4
Q ss_pred CCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000978 891 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 969 (1203)
Q Consensus 891 i~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-g~~fi~I~~ 969 (1203)
+....+.++|++|+|++.+++.|++.+.+|+.+++.|... ..|+++|||+||||||||+||+++|+++ +.+|+.+++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3344557899999999999999999999999998888632 4567899999999999999999999999 999999999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 970 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 970 seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
+++.+.+.|..+..++.+|..++...|+||||||||.+++.+... .....++++++|+..++++.. ...+++||+|||
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn 279 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATN 279 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEES
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCC
Confidence 999999999999999999999999999999999999998776543 344567888999999998753 247899999999
Q ss_pred CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1050 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1203)
Q Consensus 1050 ~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~ 1128 (1203)
.++.|+++++|||+..+++++|+.++|..||+.++...... .+.++..|+..++||+++||..+|+.|++.+++++...
T Consensus 280 ~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp CGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999876543 67889999999999999999999999999999986532
Q ss_pred HHHHHHHHHhcCCC------------CC--------------CC-CCCCCCccccHHHHHHHHHHhcccccccccchhhh
Q 000978 1129 EKKERAAAMAEGKP------------AP--------------AL-SGCADIRPLNMDDFKYAHERVCASVSSESVNMSEL 1181 (1203)
Q Consensus 1129 ~~~~~~~a~~e~~~------------~~--------------~~-~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~ 1181 (1203)
..... ..+.. .| .. .......+|+++||..|++.++||++.+ .+..+
T Consensus 360 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~--~~~~~ 433 (444)
T 2zan_A 360 THFKK----VRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQ--DLLKL 433 (444)
T ss_dssp SEEEE----ECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHH--HHHHH
T ss_pred hhhhh----hccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHH--HHHHH
Confidence 10000 00000 00 00 0011235899999999999999999877 36679
Q ss_pred HHHHHHhcCCC
Q 000978 1182 LQWNELYGEGG 1192 (1203)
Q Consensus 1182 v~W~di~G~~g 1192 (1203)
.+|+..||.+|
T Consensus 434 ~~~~~~~~~~~ 444 (444)
T 2zan_A 434 KKFTEDFGQEG 444 (444)
T ss_dssp HHHTSSCTTTC
T ss_pred HHHHHHHcCCC
Confidence 99999999875
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.3e-33 Score=310.85 Aligned_cols=287 Identities=36% Similarity=0.611 Sum_probs=232.5
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+.++|++++|++.+++.|++.+..++.+++.|...++ .+++++||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4688999999999999999999999999999987664 455899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
++|..+..++.+|..|....|+||||||||.+...+... .......+++++|+..++++.. ..+++||+|||.++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999997554221 0111224566778888887643 467999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
+++++++ ||+..++++.|+.++|.+|++.++....+..++++..++.++.||+|+||.++|++|+..++++.+.....
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 99999999999999999999999988877778899999999999999999999999999999887644321
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHh
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 1188 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~ 1188 (1203)
........... ...........|+++||.+|+++++|+++.+ .+..+.+|.+.|
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~--~~~~~~~~~~~~ 300 (301)
T 3cf0_A 247 RERERQTNPSA-MEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTL 300 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTCCCSSCHH--HHHHHHHHHHHH
T ss_pred hhhhccccccc-ccccccccCCccCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHh
Confidence 10000000000 0000011236799999999999999998866 355788999876
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-32 Score=310.78 Aligned_cols=277 Identities=43% Similarity=0.761 Sum_probs=231.3
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
..++|++++|++.+++.|++.+.+++.+++.|... ..++++|||+||||||||+||+++|++++.+|+.++++++...
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 35789999999999999999999888888877543 3566899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
+.|..+..++.+|..+....|+||||||||.|...+.. ..+....+++++++..+++.......+++||+|||.++.++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999876543 23445678888999999987655567899999999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 1134 (1203)
Q Consensus 1056 ~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~ 1134 (1203)
+++++||+..++++.|+.++|.+|++.++...... .+.++..|++.+.||+++||..||+.|+..+++++.+.....
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~-- 313 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT-- 313 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcc--
Confidence 99999999999999999999999999999876543 567889999999999999999999999999988653221110
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCC
Q 000978 1135 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 1191 (1203)
Q Consensus 1135 ~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~ 1191 (1203)
......++|+++||..|++.+.|++..+ ....+.+|+++||.+
T Consensus 314 ------------~~~~~~~~i~~~d~~~al~~~~ps~~~~--~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 314 ------------ITPDQVRPIAYIDFENAFRTVRPSVSPK--DLELYENWNKTFGCG 356 (357)
T ss_dssp -----------------CCCBCHHHHHHHHHHHGGGCCCC--CHHHHHHHHHHHSCC
T ss_pred ------------ccccccCCcCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCCC
Confidence 0112347899999999999999998877 456799999999975
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=7.3e-32 Score=300.46 Aligned_cols=260 Identities=37% Similarity=0.619 Sum_probs=207.7
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+.++|+|++|++++++.|++.+.+|+.+++.|...++..| +|+||+||||||||+|+++||.+++.+++.+++.++.+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~-~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC-SEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC-CeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 3689999999999999999999999999999988775444 789999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
+.+..+..++.+|..++...|+|+|+||||.++..+... ......+++++++..+++... ...++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCC
Confidence 889999999999999988899999999999987654321 122334677888889988743 46789999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhh---CCCCCchhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAK---EDLSPDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1203)
Q Consensus 1056 ~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~---~~l~~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~airel~~~ 1128 (1203)
++++| ||++.|++++|+.++|.+||+.+++. ..+..++++..||..+ +||+|+||.+||++|++.++++.+..
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 99999999999999999999999854 2345688999999875 59999999999999999999875432
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1129 EKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1129 ~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
.... .......|+++||++|+++++||+..+
T Consensus 241 ~~~~---------------~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 241 QKSG---------------NEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp ------------------------CCBCHHHHHHHHTTCCCCC---
T ss_pred cccc---------------ccccCCeecHHHHHHHHHHhcCCCChh
Confidence 2110 001224799999999999999998765
No 17
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=1e-31 Score=321.74 Aligned_cols=281 Identities=37% Similarity=0.617 Sum_probs=228.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
++|++++|++..++.|++.+..++.+++.|...+. .++.+|||+||||||||++|+++|++++.+|+.++|+++.+.++
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 57899999999999999999999999999987664 45589999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHH
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1057 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1057 (1203)
|+.+..++.+|..|....|+||||||||.|.+++... ......+++..|+..+++... ..+++||+|||.++.|+++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 9999999999999999999999999999998776533 235567788888888887643 4689999999999999999
Q ss_pred HHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1058 VIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAA 1135 (1203)
Q Consensus 1058 Llr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~ 1135 (1203)
+++ ||+..++++.|+.++|.+||+.++....+..+.++..++..+.||+++||..||++|+..++++......
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~----- 431 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID----- 431 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCC-----
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 999 9999999999999999999999998888888889999999999999999999999999998876321100
Q ss_pred HHhcCCCCCCC-CCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000978 1136 AMAEGKPAPAL-SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1192 (1203)
Q Consensus 1136 a~~e~~~~~~~-~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g 1192 (1203)
...... ........|+++||..|++++.|+..++.....|.++|+||||...
T Consensus 432 -----~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 432 -----LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp -----TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred -----ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 000000 0001124699999999999999999999888889999999999753
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=5.6e-31 Score=293.65 Aligned_cols=278 Identities=45% Similarity=0.763 Sum_probs=222.7
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
...++|++++|++.+++.|.+.+..++.+++.|... ..++.++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 356899999999999999999999888888877543 356689999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc-CCccEEEEEecCCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DTERILVLAATNRPFD 1053 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~-~~~~VlVIaTTN~p~~ 1053 (1203)
.+.|..+..++.+|..+....|+||||||+|.+...+... .......+.+.|+..+++.... ...+++||++||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 9999999999999999999999999999999998765431 1222345667777777766432 2357999999999999
Q ss_pred CcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKE 1132 (1203)
Q Consensus 1054 Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~ 1132 (1203)
+++++++||+..+++++|+.++|..|++.++...+.. .+.++..|++.+.||+++||..||+.|+..+++++.......
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~ 251 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999876543 566789999999999999999999999999988753222110
Q ss_pred HHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCC
Q 000978 1133 RAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 1191 (1203)
Q Consensus 1133 ~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~ 1191 (1203)
........|+++||..|+..+.|+...+ ....+.+|++.||.-
T Consensus 252 --------------~~~~~~~~i~~~d~~~a~~~~~~s~~~~--~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 252 --------------LDISAMRAITEQDFHSSLKRIRRSVAPQ--SLNSYEKWSQDYGDI 294 (297)
T ss_dssp ----------------CCCCCCCCHHHHHHHTTSCCCSSCHH--HHHHHHHHC------
T ss_pred --------------ccccccCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCe
Confidence 0112346899999999999999998765 356899999999964
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=300.06 Aligned_cols=277 Identities=45% Similarity=0.799 Sum_probs=220.8
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
..++|++|+|++.+++.|.+++..++.+++.|... ..+.++|||+||||||||+||++||++++.+|+.+++.++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 46789999999999999999998888877777643 3456899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
+.|..+..++.+|..++...|+||||||||.|+..+.. .......++++.|+..+++.......+++||+|||.++.|+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999866532 23344567788888888877655567899999999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 1134 (1203)
Q Consensus 1056 ~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~ 1134 (1203)
+++++||..+++++.|+.++|.+||+.++...+.. .+.++..|+..+.||++++|..||..|+..+++++.+....
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~--- 343 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK--- 343 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC------
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhh---
Confidence 99999999899999999999999999999876544 56678999999999999999999999999988864321110
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCC
Q 000978 1135 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 1191 (1203)
Q Consensus 1135 ~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~ 1191 (1203)
. ......+.|+++||..|++.+.++...+ .+..+.+|...||..
T Consensus 344 ----------~-~~~~~~~~i~~~d~~~al~~~~~s~~~~--~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 344 ----------N-MSASEMRNIRLSDFTESLKKIKRSVSPQ--TLEAYIRWNKDFGDT 387 (389)
T ss_dssp ----------C-CSSSCCCCCCHHHHHHHHHHCCCSSCHH--HHHHHHHHHHHCC--
T ss_pred ----------c-cchhhcCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCc
Confidence 0 0112456899999999999999998755 456899999999975
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.9e-29 Score=277.89 Aligned_cols=267 Identities=39% Similarity=0.645 Sum_probs=217.3
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~ 976 (1203)
.++|++++|++.+++.|.+.+..++..++.+...+. .++.++||+||||||||+||+++|++++.+++.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 578999999999999999999998899998887664 3458899999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCC
Q 000978 977 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1203)
Q Consensus 977 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1054 (1203)
.|..+..+..+|..+....|+||||||||.+..++... .........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999998765432 1223344556667777766533 4679999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1055 DEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKE 1132 (1203)
Q Consensus 1055 d~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~ 1132 (1203)
++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..|+..+.|+++++|..+|+.|...++++
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~-------- 241 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE-------- 241 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT--------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------
Confidence 999999 9999999999999999999999998888777888999999999999999999999999887663
Q ss_pred HHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000978 1133 RAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1192 (1203)
Q Consensus 1133 ~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g 1192 (1203)
....|+++||.+|++.+.+...........+..|...+|..+
T Consensus 242 ------------------~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 242 ------------------LRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp ------------------TCSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred ------------------ccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 124699999999999998776666556678888998888655
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=4.5e-29 Score=297.37 Aligned_cols=265 Identities=38% Similarity=0.589 Sum_probs=217.2
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
...++|+|++|++++++.+++++.. +..+..|...+. ++++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 5678999999999999999998875 667777776664 44578999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.+.|..+..++.+|..|....|+||||||||.+...+... +......+++++|+..++++.. ..+++||++||.++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999997765421 2223345678888888887643 46799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.|+++++| ||++.|.|+.|+.++|.+|++.+++...+..++++..|+..+.||+++||.++|++|+..+.++
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------ 239 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------ 239 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999998888778888999999999999999999999998876542
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccc----hhhhHHHHHHhc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVN----MSELLQWNELYG 1189 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~----~~~~v~W~di~G 1189 (1203)
....|+++||.+|++++.+........ ....+.|.+.|+
T Consensus 240 --------------------~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 240 --------------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 124699999999999998765443322 234566776654
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=5.2e-28 Score=264.74 Aligned_cols=246 Identities=40% Similarity=0.619 Sum_probs=206.7
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
....+|++++|++.+++.+.+.+.. +..++.+...+. .+++++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3467899999999999999988764 556666655443 34578999999999999999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 975 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.+.|..+..++.+|..+....|+||||||||.+...+... ........+++.++..+++... ..+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8999999999999999999899999999999997655321 1223334677788888887643 46799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1053 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1130 (1203)
Q Consensus 1053 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~ 1130 (1203)
.+++++++ ||++.+.++.|+.++|.+|++.++....+..+.++..++..+.||+++||.++|..|+..+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777888999999999999999999999999876552
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 000978 1131 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1131 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
....|+++||.+|++.+...
T Consensus 236 --------------------~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 236 --------------------NKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHTTC
T ss_pred --------------------CCCcccHHHHHHHHHHHhcC
Confidence 22579999999999988643
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=265.71 Aligned_cols=248 Identities=35% Similarity=0.567 Sum_probs=191.4
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 976 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~ 976 (1203)
.++|++++|++.+++.|++++.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 47899999999999999998865 566666665553 3458899999999999999999999999999999999998888
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc---hhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 977 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 977 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~---~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
.+..+..++.+|..+....|+||||||||.+...+.... ........+..++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976653211 012223456667777776532 468999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchh--HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD--FDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~d--l~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+++++++ ||+..++++.|+.++|.+|++.++....+..+.+ ...++..+.||++++|.++|+.|+..++++
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~----- 232 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE----- 232 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 9999999 9999999999999999999999998877664433 478999999999999999999999887653
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
....|+++||.+|++.+.++....
T Consensus 233 ---------------------~~~~i~~~d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 233 ---------------------GHTSVHTLNFEYAVERVLAGTAKK 256 (262)
T ss_dssp -------------------------CCBCCHHHHHHHHHHHHHCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHhccChhhh
Confidence 124689999999999998776544
No 24
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.95 E-value=4.6e-27 Score=295.57 Aligned_cols=401 Identities=15% Similarity=0.196 Sum_probs=242.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchh
Q 000978 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQT 722 (1203)
Q Consensus 643 i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~ 722 (1203)
+..+|+.+.. .+|.||||| +..+..+.|++.|+ .|.|.|||+||..++.+
T Consensus 256 l~~~~~~~~~---~~~~iLfiD-------~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~------------------ 305 (758)
T 3pxi_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRK------------------ 305 (758)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHH------------------
T ss_pred HHHHHHHHHh---cCCEEEEEc-------CchhHHHHHHHHHh--cCCEEEEeCCChHHHHH------------------
Confidence 5666666666 789999999 66788888888886 48999999999887421
Q ss_pred hhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCC
Q 000978 723 ALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLE 802 (1203)
Q Consensus 723 ~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~gls 802 (1203)
..+++.+|.+|| +.|.|++|+.+++..||+..++++.. .+++.....++. .
T Consensus 306 --------------------~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~----~~~~~i~~~al~----~ 356 (758)
T 3pxi_A 306 --------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA----HHRVSITDDAIE----A 356 (758)
T ss_dssp --------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG----GSSCSCCHHHHH----H
T ss_pred --------------------HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH----hcCCCCCHHHHH----H
Confidence 122577888999 88999999999999999977655332 233332222222 1
Q ss_pred cccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCcccc-------------ccccchhhhhhhhHHHHH---HHhh
Q 000978 803 CEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDAR-------------LVLSCESIQYGIGIFQAI---QNES 866 (1203)
Q Consensus 803 c~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~k-------------l~ls~~~l~~al~~lq~i---~~~~ 866 (1203)
+..+...++.+..++.+.++.+...+....+.....|..-.. ..+...++..+..+...+ ....
T Consensus 357 ~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 436 (758)
T 3pxi_A 357 AVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQV 436 (758)
T ss_dssp HHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 234455566677778888877766655444443332211000 001111222221111111 1111
Q ss_pred Hhh-------hhcccccCCHHHHHHHHhcCcCCCCCCCcc--------------cccccccHHHHHHHHHHHhCccCchh
Q 000978 867 KSL-------KKSLKDVVTENEFEKRLLADVIPPSDIGVT--------------FDDIGALENVKDTLKELVMLPLQRPE 925 (1203)
Q Consensus 867 k~~-------k~~~k~~v~~~e~e~~ll~~ii~~~~~~vt--------------~~dI~Gle~vk~~L~e~v~~pl~~~e 925 (1203)
... .......++.+++.. .+..+...+..... ..+++|.+..++.+.+.+......
T Consensus 437 ~~~~~~~~~~~~~~~~~v~~~~i~~-~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~-- 513 (758)
T 3pxi_A 437 EDTKKSWKEKQGQENSEVTVDDIAM-VVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAG-- 513 (758)
T ss_dssp HHHHSGGGHHHHCC---CCTHHHHH-HHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHhhcccCcccCHHHHHH-HHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcc--
Confidence 111 112233456666665 33444433221111 245788888888888777532110
Q ss_pred hhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEc
Q 000978 926 LFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 926 ~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfID 1002 (1203)
.....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+... ...++...++.+++|||||
T Consensus 514 ---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lD 586 (758)
T 3pxi_A 514 ---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLD 586 (758)
T ss_dssp ---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEE
T ss_pred ---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEe
Confidence 01123555579999999999999999999998 7899999999988766555 2334455566678999999
Q ss_pred cchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------ccCCccEEEEEecCCCCC------------CcHHHHhccc
Q 000978 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRPFD------------LDEAVIRRLP 1063 (1203)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p~~------------Ld~aLlrRFd 1063 (1203)
|||.+ . ..+++.|+..++... .....+++||+|||.+.. +.+++++||+
T Consensus 587 Ei~~~-----~-------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~ 654 (758)
T 3pxi_A 587 AIEKA-----H-------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID 654 (758)
T ss_dssp CGGGS-----C-------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS
T ss_pred Ccccc-----C-------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC
Confidence 99977 2 234444555444321 113457899999997544 7899999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhC-------CCC---CchhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 000978 1064 RRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1064 ~~I~v~~Pd~eeR~eIL~~~l~~~-------~l~---~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
.+|.|++|+.+++.+|++.++... +.. .+..++.|+... ..+..++|+++++.+...++.+
T Consensus 655 ~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 655 EIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp EEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999887542 111 334456676542 3456788988888877665544
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=2.4e-27 Score=283.94 Aligned_cols=264 Identities=36% Similarity=0.560 Sum_probs=220.9
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
..++|++++|+++++..+++++.. +..+..|...+. +.++++||+||||||||+||++||.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 568999999999999999998865 556666665554 344789999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCC--CchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
+.|.....++.+|..++...|+||||||||.+...+.. ...+....+++++++..+++... ...+++|++||.|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 88888888999999998888999999999999765542 12234456778888888988743 467899999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
||++++| ||++.|.|+.|+.++|.+||+.+++...+..++++..||..+.||+++||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 9999999999999999999999888777778889999999999999999999999998765432
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccch----hhhHHHHHHhc
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM----SELLQWNELYG 1189 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~----~~~v~W~di~G 1189 (1203)
....|+++||.+|++.+.++.......+ ...+.|.++++
T Consensus 255 -------------------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 255 -------------------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp -------------------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred -------------------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 2246999999999999988765443333 35667777765
No 26
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.94 E-value=2e-26 Score=289.51 Aligned_cols=391 Identities=16% Similarity=0.218 Sum_probs=240.7
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~------~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~ 715 (1203)
.+..+++.+.. .++.||||||+|.+++ +..++.+.|+.+|+. +++.+||++|.+++.+.
T Consensus 266 ~l~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~---------- 330 (758)
T 1r6b_X 266 RFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNI---------- 330 (758)
T ss_dssp HHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCC----------
T ss_pred HHHHHHHHHHh---cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhh----------
Confidence 35555555544 6899999999999875 244556667776654 89999999997753110
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHH
Q 000978 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 795 (1203)
Q Consensus 716 ~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~v 795 (1203)
.+.|.+|.+||. .|.|.+|+.+++..||+..+..+.... ++.....+
T Consensus 331 ----------------------------~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~----~v~~~~~a 377 (758)
T 1r6b_X 331 ----------------------------FEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHH----DVRYTAKA 377 (758)
T ss_dssp ----------------------------CCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHH----TCCCCHHH
T ss_pred ----------------------------hhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhc----CCCCCHHH
Confidence 113566788895 899999999999999997765533211 11111111
Q ss_pred hhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhhhhhHHHHHHHhhHhhhhcccc
Q 000978 796 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKD 875 (1203)
Q Consensus 796 L~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~al~~lq~i~~~~k~~k~~~k~ 875 (1203)
+. ....+...++.+..++.+.++.+...+....+. +.......++.+++..++..+..+ + ..
T Consensus 378 l~----~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~----~~~~~~~~v~~~di~~~~~~~~~i-p---------~~ 439 (758)
T 1r6b_X 378 VR----AAVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVSKRKKTVNVADIESVVARIARI-P---------EK 439 (758)
T ss_dssp HH----HHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS----SSCCCCCSCCHHHHHHHHHHHSCC-C---------CC
T ss_pred HH----HHHHHhhhhcccccCchHHHHHHHHHHHHHhcc----cccccCCccCHHHHHHHHHHhcCC-C---------cc
Confidence 11 012333445555666666666554443322221 111122334555544433321100 0 00
Q ss_pred cCCHHHHHH--HHhcCcCCCCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHH
Q 000978 876 VVTENEFEK--RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 876 ~v~~~e~e~--~ll~~ii~~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LA 953 (1203)
.+..++... .+... + ..++.|.+..++.+...+..... .-....+|..++||+||||||||++|
T Consensus 440 ~~~~~~~~~l~~l~~~-l--------~~~v~g~~~~~~~l~~~i~~~~~-----g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 440 SVSQSDRDTLKNLGDR-L--------KMLVFGQDKAIEALTEAIKMARA-----GLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CSSSSHHHHHHHHHHH-H--------TTTSCSCHHHHHHHHHHHHHHHT-----TCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred ccchhHHHHHHHHHHH-H--------HhhccCHHHHHHHHHHHHHHHhc-----ccCCCCCCceEEEEECCCCCcHHHHH
Confidence 011111110 00000 0 13467778887777766542100 00112356668999999999999999
Q ss_pred HHHHHHhCCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHH
Q 000978 954 KAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 1023 (1203)
Q Consensus 954 rALA~eLg~~fi~I~~seL~s-----~~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~i 1023 (1203)
+++|+.++.+|+.++|+++.. ..+|....++ ..+....++.+++||||||||.+- ..+
T Consensus 506 ~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~ 573 (758)
T 1r6b_X 506 VQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDV 573 (758)
T ss_dssp HHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC------------HHH
T ss_pred HHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC------------HHH
Confidence 999999999999999988743 3444433333 234555666778999999999772 335
Q ss_pred HHHHHHhhcCCccc-------CCccEEEEEecCCCC-------------------------CCcHHHHhcccccccCCCC
Q 000978 1024 KNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DLDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 1024 l~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~~I~v~~P 1071 (1203)
++.|+..++..... +-.+++||+|||... .+++++++||+.+|.|++|
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l 653 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCC
Confidence 55556555532211 125789999999753 5788999999999999999
Q ss_pred CHHHHHHHHHHHHhhC-------C--C-CCchhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 000978 1072 DAPNRAKILQVILAKE-------D--L-SPDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1072 d~eeR~eIL~~~l~~~-------~--l-~~d~dl~~LA~~T--~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
+.+++..|++.++... . + ..+..++.|+... ..+..++|.++++.+...++.+
T Consensus 654 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 654 STDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999988632 1 1 1344466677644 3456888999988888776554
No 27
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.94 E-value=2.5e-25 Score=283.24 Aligned_cols=414 Identities=16% Similarity=0.231 Sum_probs=242.3
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~-----~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~ 716 (1203)
.+..+++.+.. ..+|+||||||+|.+.+ |..++.+.|++.|++ |++.+||++|..++.+
T Consensus 250 ~l~~~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~------------ 313 (854)
T 1qvr_A 250 RLKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE------------ 313 (854)
T ss_dssp HHHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH------------
T ss_pred HHHHHHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh------------
Confidence 45555555544 14799999999999874 447888999999976 8999999999876311
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHh
Q 000978 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVL 796 (1203)
Q Consensus 717 ~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL 796 (1203)
.+.+.+|.+||. .|.|.+|+.+++..||+..+.+... .+++.....++
T Consensus 314 ---------------------------~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~----~~~~~i~~~al 361 (854)
T 1qvr_A 314 ---------------------------IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV----HHGVRISDSAI 361 (854)
T ss_dssp ---------------------------HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH----HTTCEECHHHH
T ss_pred ---------------------------hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh----hcCCCCCHHHH
Confidence 113556777895 6999999999999999877655322 22333222222
Q ss_pred hccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCc--c----------ccccccch----------hhhh
Q 000978 797 GRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D----------ARLVLSCE----------SIQY 854 (1203)
Q Consensus 797 ~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~--~----------~kl~ls~~----------~l~~ 854 (1203)
.. ...+...++.+..++.+.++.+...+....+.....|.. . ....+..+ .+..
T Consensus 362 ~~----~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (854)
T 1qvr_A 362 IA----AATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEA 437 (854)
T ss_dssp HH----HHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHH
T ss_pred HH----HHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 21 234555566677777777777766655544432221110 0 00000000 0000
Q ss_pred hh-------h--------------HHHHHHHh----------------------------------hHhhh------hcc
Q 000978 855 GI-------G--------------IFQAIQNE----------------------------------SKSLK------KSL 873 (1203)
Q Consensus 855 al-------~--------------~lq~i~~~----------------------------------~k~~k------~~~ 873 (1203)
.+ . .++.+... ..... .-+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (854)
T 1qvr_A 438 EIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFV 517 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccc
Confidence 00 0 00000000 00000 001
Q ss_pred cccCCHHHHHHHHhcCcCCCCCCC--------------cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceE
Q 000978 874 KDVVTENEFEKRLLADVIPPSDIG--------------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 939 (1203)
Q Consensus 874 k~~v~~~e~e~~ll~~ii~~~~~~--------------vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gV 939 (1203)
...++.+++.. .+..+...+... .-+.+++|.+..++.+...+..... ......+|..++
T Consensus 518 ~~~v~~~~l~~-~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~-----g~~~~~~p~~~v 591 (854)
T 1qvr_A 518 RLEVTEEDIAE-IVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARA-----GLKDPNRPIGSF 591 (854)
T ss_dssp CSEECHHHHHH-HHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGG-----GCSCSSSCSEEE
T ss_pred cCCcCHHHHHH-HHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhc-----ccCCCCCCceEE
Confidence 22345555554 333443321100 1124678888888888777753110 001123565789
Q ss_pred EEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCceEEEccchh
Q 000978 940 LLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 940 LL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-----~~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID~ 1006 (1203)
||+||||||||++|++|++.+ +.+|+.++|+++.. ..+|....++ ..+....+..+++||||||||.
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~ 671 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEK 671 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGG
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccc
Confidence 999999999999999999999 78999999987643 3344333332 3344555566679999999997
Q ss_pred hccCCCCCchhHHHHHHHHHHHHhhcCCccc-------CCccEEEEEecCC--------------------------CCC
Q 000978 1007 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNR--------------------------PFD 1053 (1203)
Q Consensus 1007 L~~~r~~~~~~~al~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~--------------------------p~~ 1053 (1203)
+- ..+++.|+..++..... +-.+++||+|||. ...
T Consensus 672 l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~ 739 (854)
T 1qvr_A 672 AH------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQH 739 (854)
T ss_dssp SC------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cC------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 71 35666677777643211 2257899999997 235
Q ss_pred CcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-------CC---CCchhHHHHHHHcC--CCcHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DL---SPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1054 Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~-------~l---~~d~dl~~LA~~T~--G~Sg~DL~~L~~~Aa~~a 1121 (1203)
+.++|++||+.++.|.+|+.+++..|++.++... +. ..+..++.|+...- .+..++|+++++.+...+
T Consensus 740 f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp SCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred CCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999887631 11 13445677777655 568899999999888776
Q ss_pred HHHH
Q 000978 1122 IKEI 1125 (1203)
Q Consensus 1122 irel 1125 (1203)
+.+.
T Consensus 820 ~~~~ 823 (854)
T 1qvr_A 820 LAQK 823 (854)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=8.8e-26 Score=246.62 Aligned_cols=241 Identities=37% Similarity=0.587 Sum_probs=198.6
Q ss_pred CCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000978 894 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 973 (1203)
Q Consensus 894 ~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~ 973 (1203)
..+.++|++++|++.++..+++++.. +..+..+...++. .+++++|+||||||||+|+++++..++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~-~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34568999999999999999987764 4455666655543 346799999999999999999999999999999998887
Q ss_pred cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC
Q 000978 974 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1051 (1203)
..+.+.....+..+|..+....|+++++||||.+...+... .......++++.++..+++... ...++++++||.|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77778778888999999988889999999999987654321 1223445677888888887643 3568999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1052 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1129 (1203)
Q Consensus 1052 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~ 1129 (1203)
+.+|+++++ ||+..++++.|+.++|.+||+.++....+..+.++..||..+.||+++||.++|+.|+..+.++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~----- 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 8999999999999999999999988777777888999999999999999999999998876542
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHH
Q 000978 1130 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAH 1164 (1203)
Q Consensus 1130 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al 1164 (1203)
....|+++||++|+
T Consensus 240 ---------------------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 ---------------------GRRKITMKDLEEAA 253 (254)
T ss_dssp ---------------------TCSSBCHHHHHHHT
T ss_pred ---------------------cCCCcCHHHHHHHh
Confidence 12469999999886
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-26 Score=268.33 Aligned_cols=233 Identities=15% Similarity=0.235 Sum_probs=185.8
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
-+|||++...+ |+.|..|.+++..+|+||+++ +++ .+.+++|||+|||| +++++||||+|++++++|+.++.
T Consensus 143 p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPG--TGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGL--TKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPG--TGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSS--SSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCC--CCHHHHHHHHHHhhCCCceEEEh
Confidence 36899999999 999999999999999999985 333 45578999999999 99999999999999999999887
Q ss_pred ccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 000978 468 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 547 (1203)
Q Consensus 468 ~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 547 (1203)
+.|.
T Consensus 216 s~l~---------------------------------------------------------------------------- 219 (405)
T 4b4t_J 216 AELV---------------------------------------------------------------------------- 219 (405)
T ss_dssp GGGS----------------------------------------------------------------------------
T ss_pred HHhh----------------------------------------------------------------------------
Confidence 4332
Q ss_pred ccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccc
Q 000978 548 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 627 (1203)
Q Consensus 548 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 627 (1203)
T Consensus 220 -------------------------------------------------------------------------------- 219 (405)
T 4b4t_J 220 -------------------------------------------------------------------------------- 219 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----c----chhhhHHHHH---hc--CCCcEEEE
Q 000978 628 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----S----DSYSTFKSRL---EK--LPDKVIVI 694 (1203)
Q Consensus 628 ~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~----~~~~~lk~~L---~~--l~g~V~vI 694 (1203)
++|+|+ .+..|+.+|+.+.+ ..|+||||||||.+++.+ . +....+-..| +. ...+|+||
T Consensus 220 ---sk~vGe--se~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 220 ---QKYIGE--GSRMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp ---CSSTTH--HHHHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred ---ccccch--HHHHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 346666 77789999999999 999999999999987622 1 1112233333 22 24589999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 000978 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1203)
Q Consensus 695 Gst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~ 774 (1203)
|+||+++..||+ |+|||| |+.+|+|++|+.++|.+||+.
T Consensus 292 aATNrpd~LDpA-------llRpGR----------------------------------fD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 292 MATNRLDILDPA-------LLRPGR----------------------------------IDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp EEESCSSSSCHH-------HHSTTS----------------------------------SCCEEECCCCCHHHHHHHHHH
T ss_pred eccCChhhCCHh-------HcCCCc----------------------------------CceEEEcCCcCHHHHHHHHHH
Confidence 999999999999 889999 889999999999999999998
Q ss_pred hhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhh
Q 000978 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQY 854 (1203)
Q Consensus 775 ~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~ 854 (1203)
++.+ +....+++....+-.+.||+|+||..+|.++.+. ++. .....|+.++|..
T Consensus 331 ~~~~----~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~---------------Air-------~~~~~vt~~Df~~ 384 (405)
T 4b4t_J 331 HSRK----MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY---------------ALR-------ERRIHVTQEDFEL 384 (405)
T ss_dssp HHTT----SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH---------------HHH-------TTCSBCCHHHHHH
T ss_pred HhcC----CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHH---------------HHH-------cCCCCcCHHHHHH
Confidence 8854 3445566666777788999999999999866442 111 1345688899998
Q ss_pred hhhHH
Q 000978 855 GIGIF 859 (1203)
Q Consensus 855 al~~l 859 (1203)
|+..+
T Consensus 385 Al~~v 389 (405)
T 4b4t_J 385 AVGKV 389 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 30
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=3.3e-28 Score=267.31 Aligned_cols=253 Identities=36% Similarity=0.554 Sum_probs=204.3
Q ss_pred CCCCCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 893 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 893 ~~~~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
+..+.++|++++|++.+++.|++.+.. +..++.|...+. .+++++||+||||||||+||+++|++++.+++.+++..+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 344567899999999999999998764 667777766553 344789999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch---hHHHHHHHHHHHHhhcCCcccCCccEEEEEecC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE---HEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1049 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~---~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1049 (1203)
...+.|..+..++.+|..+....|+||||||+|.|...+...+. ......+++.++..+++... ...+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecC
Confidence 88888887777888999999889999999999999765421100 00011345566777776543 245699999999
Q ss_pred CCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 000978 1050 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1127 (1203)
Q Consensus 1050 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~ 1127 (1203)
.++.+++++++ ||+..++++.|+.++|.+||+.++....+..+.++..|+..+.||+++||.++|+.|+..+.++
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~--- 236 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN--- 236 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS---
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 99999999999 9999999999999999999999998877777778899999999999999999999998764321
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccccccc
Q 000978 1128 KEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1174 (1203)
Q Consensus 1128 ~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e 1174 (1203)
....|+++||.+|++.+.++...+
T Consensus 237 -----------------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 -----------------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -----------------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred -----------------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 235799999999999998887655
No 31
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.3e-26 Score=263.51 Aligned_cols=235 Identities=16% Similarity=0.208 Sum_probs=186.9
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+.-+|||+++..+ |+.|..|.+++..+|+|+++++ .--.+.+++|||+|||| +++++||||||++++++|+.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~f~--~~Gi~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPELYE--EMGIKPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHHHH--HHTCCCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEEE
Confidence 4567999999999 9999999999999999999853 22345679999999999 9999999999999999999998
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
.+.|.
T Consensus 249 ~s~l~--------------------------------------------------------------------------- 253 (437)
T 4b4t_I 249 GSELI--------------------------------------------------------------------------- 253 (437)
T ss_dssp SGGGC---------------------------------------------------------------------------
T ss_pred HHHhh---------------------------------------------------------------------------
Confidence 64333
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
T Consensus 254 -------------------------------------------------------------------------------- 253 (437)
T 4b4t_I 254 -------------------------------------------------------------------------------- 253 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhc-----CCCcEEE
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEK-----LPDKVIV 693 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~~~~~lk~~L~~-----l~g~V~v 693 (1203)
++|+++ .+..++.+|+.+.+ ..|+||||||||.++..+ .+....+...|.. ..++|+|
T Consensus 254 ----sk~vGe--sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 254 ----QKYLGD--GPRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp ----CSSSSH--HHHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred ----hccCch--HHHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 345566 67789999999999 999999999999988622 1222233333322 2468999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000978 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1203)
Q Consensus 694 IGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk 773 (1203)
||+||+++..||+ |+|||| |+.+|+|++|+.++|.+||+
T Consensus 325 IaATNrpd~LDpA-------LlRpGR----------------------------------fD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 325 IMATNKIETLDPA-------LIRPGR----------------------------------IDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp EEEESCSTTCCTT-------SSCTTT----------------------------------EEEEECCCCCCHHHHHHHHH
T ss_pred EEeCCChhhcCHH-------HhcCCc----------------------------------eeEEEEcCCcCHHHHHHHHH
Confidence 9999999999999 889999 77899999999999999999
Q ss_pred HhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhh
Q 000978 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 853 (1203)
Q Consensus 774 ~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~ 853 (1203)
.++.+ +....+++....+-.+.||+|+||..+|.++.+. ++. .....|+.++|.
T Consensus 364 ~~l~~----~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~---------------Air-------~~~~~It~eDf~ 417 (437)
T 4b4t_I 364 IHTSK----MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLL---------------ALR-------ERRMQVTAEDFK 417 (437)
T ss_dssp HHHTT----SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHH---------------HHH-------TTCSCBCHHHHH
T ss_pred HHhcC----CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------------HHH-------cCCCccCHHHHH
Confidence 98865 3445566666777788999999999998866442 111 134468888888
Q ss_pred hhhhH
Q 000978 854 YGIGI 858 (1203)
Q Consensus 854 ~al~~ 858 (1203)
.|+..
T Consensus 418 ~Al~r 422 (437)
T 4b4t_I 418 QAKER 422 (437)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87763
No 32
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1.7e-24 Score=240.14 Aligned_cols=239 Identities=38% Similarity=0.593 Sum_probs=196.9
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
+.++|++++|+++++..+++++.. +..+..+...++.. +++++|+||||||||+|+++|+..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~-~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARI-PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCC-CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCC-CCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 568999999999999999988764 44555665555433 3679999999999999999999999999999999888777
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC--chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCC
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1053 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1053 (1203)
+.+.....+..+|..+....|+++|+||||.+...+... .........++.++..+++... ...++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777888999999988889999999999987554321 1123345667788888887643 356899999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1054 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1131 (1203)
Q Consensus 1054 Ld~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~ 1131 (1203)
||+++++ ||+..++|+.|+.++|.+||+.++....+..+.++..++..+.||+++||.++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------- 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988777777888999999999999999999999998766442
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHH
Q 000978 1132 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAH 1164 (1203)
Q Consensus 1132 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al 1164 (1203)
....|+++||++|+
T Consensus 264 -------------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -------------------GRRKITMKDLEEAA 277 (278)
T ss_dssp -------------------TCCSBCHHHHHHHT
T ss_pred -------------------CCCCcCHHHHHHHh
Confidence 12469999999886
No 33
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-25 Score=260.95 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=174.7
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 000978 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1203)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1203)
-+.-+|||+++..+ ++.|..|.+++..+|+|+++. .+--.+.+++|||+|||| +++++||||+|++++++|+.+
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~f--~~~g~~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADKF--KDMGIRAPKGALMYGPPG--TGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHHH--HHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 35568899999999 999999999999999999985 222345679999999999 999999999999999999999
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000978 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1203)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1203)
+.+.|..
T Consensus 247 ~~s~l~~------------------------------------------------------------------------- 253 (434)
T 4b4t_M 247 AAPQLVQ------------------------------------------------------------------------- 253 (434)
T ss_dssp EGGGGCS-------------------------------------------------------------------------
T ss_pred ehhhhhh-------------------------------------------------------------------------
Confidence 8744432
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 000978 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1203)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1203)
T Consensus 254 -------------------------------------------------------------------------------- 253 (434)
T 4b4t_M 254 -------------------------------------------------------------------------------- 253 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc--------chhhhHHHHHhcC-----CCcEE
Q 000978 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL-----PDKVI 692 (1203)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~--------~~~~~lk~~L~~l-----~g~V~ 692 (1203)
+|+|+ ....++.+|+.+.. ..|+||||||||.++..+. +....+...|..+ .++|+
T Consensus 254 ------~~vGe--se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 254 ------MYIGE--GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp ------SCSSH--HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred ------cccch--HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 35555 66789999999999 8999999999999886321 1112233333322 35899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000978 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1203)
Q Consensus 693 vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Il 772 (1203)
|||+||+++..||+ |.|||| |+.+|+|++|+.++|.+||
T Consensus 323 VIaaTNrp~~LD~A-------llRpGR----------------------------------fD~~I~i~lPd~~~R~~Il 361 (434)
T 4b4t_M 323 VLAATNRVDVLDPA-------LLRSGR----------------------------------LDRKIEFPLPSEDSRAQIL 361 (434)
T ss_dssp EEEECSSCCCCCTT-------TCSTTS----------------------------------EEEEEECCCCCHHHHHHHH
T ss_pred EEEeCCCchhcCHh-------HhcCCc----------------------------------eeEEEEeCCcCHHHHHHHH
Confidence 99999999999999 889999 8889999999999999999
Q ss_pred HHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 773 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 773 k~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
+.++.+ +....+++....+-.+.||+|+||..+|.++.+
T Consensus 362 ~~~~~~----~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 362 QIHSRK----MTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp HHHHHH----SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHhcC----CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 988855 345566666677778899999999999986544
No 34
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=1.6e-25 Score=283.02 Aligned_cols=287 Identities=37% Similarity=0.600 Sum_probs=242.8
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 975 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~ 975 (1203)
..++|++|+|++.+++.|++.+..++.+++.|...++ .++.+|||+||||||||+||++||.+++.+++.+++.++.+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3588999999999999999999999999999987664 455899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc
Q 000978 976 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1055 (1203)
Q Consensus 976 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1055 (1203)
+.+..+..++.+|..+....|+||||||||.++..+... ......++...++..+++... ...+++|++||+++.++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhcc--cccEEEecccCCchhcC
Confidence 999999999999999999999999999999998766432 234556788888888888754 46799999999999999
Q ss_pred HHHHh--cccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1056 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1133 (1203)
Q Consensus 1056 ~aLlr--RFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~ 1133 (1203)
+++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++++..+|..|+..++++.........
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99998 9999999999999999999999998888888888999999999999999999999999888775322110000
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCccc
Q 000978 1134 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1195 (1203)
Q Consensus 1134 ~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~di~G~~g~Rk 1195 (1203)
.... ........++++||..++....++...+.....+.+.|++++|++..++
T Consensus 435 ~~~~---------~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 435 ETID---------AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp HHCC---------HHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred hccc---------hhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 0000 0001234688999999999999998877777778899999999988865
No 35
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.2e-25 Score=258.66 Aligned_cols=234 Identities=17% Similarity=0.240 Sum_probs=184.4
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
.-+|||+++..+ |+.|..|.+++..+|+|++++ +++ .+.+++|||+|||| +++++||||||++++++|+.++
T Consensus 175 ~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGGL--TEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 457899999998 999999999999999999985 333 46789999999999 9999999999999999999988
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
.+.|.
T Consensus 248 ~s~l~--------------------------------------------------------------------------- 252 (437)
T 4b4t_L 248 ASGIV--------------------------------------------------------------------------- 252 (437)
T ss_dssp GGGTC---------------------------------------------------------------------------
T ss_pred hhhhc---------------------------------------------------------------------------
Confidence 64333
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
T Consensus 253 -------------------------------------------------------------------------------- 252 (437)
T 4b4t_L 253 -------------------------------------------------------------------------------- 252 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcC-----CCcEEE
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIV 693 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~~~~~lk~~L~~l-----~g~V~v 693 (1203)
++|+++ ....++.+|+.+.. ..|+||||||||.++..+ .+....+...|..+ .++|+|
T Consensus 253 ----sk~~Ge--se~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 253 ----DKYIGE--SARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp ----CSSSSH--HHHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred ----cccchH--HHHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 245555 67789999999999 999999999999987521 11222233333222 358999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000978 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1203)
Q Consensus 694 IGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk 773 (1203)
||+||+++..||+ |+|||| |+.+|+|++|+.++|.+||+
T Consensus 324 I~ATNrp~~LDpA-------llRpGR----------------------------------fD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 324 IMATNRPDTLDPA-------LLRPGR----------------------------------LDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEEESSTTSSCTT-------TTSTTS----------------------------------EEEEECCCCCCHHHHHHHHH
T ss_pred EEecCCchhhCHH-------HhCCCc----------------------------------cceeeecCCcCHHHHHHHHH
Confidence 9999999999999 889999 78899999999999999999
Q ss_pred HhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhh
Q 000978 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 853 (1203)
Q Consensus 774 ~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~ 853 (1203)
.++.+ +....+++....+-.+.||+|+||..+|.++.+. ++.. ....|+.++|.
T Consensus 363 ~~~~~----~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~---------------air~-------~~~~i~~~d~~ 416 (437)
T 4b4t_L 363 IHTAK----VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFF---------------AIRD-------DRDHINPDDLM 416 (437)
T ss_dssp HHHHT----SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHH---------------HHHT-------TCSSBCHHHHH
T ss_pred HHhcC----CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHH---------------HHHc-------CCCCCCHHHHH
Confidence 88865 3344566666777788999999999998865432 1211 23357888888
Q ss_pred hhhhHH
Q 000978 854 YGIGIF 859 (1203)
Q Consensus 854 ~al~~l 859 (1203)
.|+..+
T Consensus 417 ~Al~~v 422 (437)
T 4b4t_L 417 KAVRKV 422 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 36
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-24 Score=253.12 Aligned_cols=234 Identities=13% Similarity=0.155 Sum_probs=184.1
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
.=+|||+++..+ |+.|..|.+++..+|+++++. +++ ...+++|||+|||| +++++||||||++++++|+.++
T Consensus 203 ~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPG--TGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSDVGGC--KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPG--TGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCC--CcHHHHHHHHHhccCCCeEEEE
Confidence 346999999999 999999999999999999985 333 35789999999999 9999999999999999999988
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
.+.|.+
T Consensus 276 ~s~L~s-------------------------------------------------------------------------- 281 (467)
T 4b4t_H 276 GSELVQ-------------------------------------------------------------------------- 281 (467)
T ss_dssp GGGGCC--------------------------------------------------------------------------
T ss_pred hHHhhc--------------------------------------------------------------------------
Confidence 744432
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
T Consensus 282 -------------------------------------------------------------------------------- 281 (467)
T 4b4t_H 282 -------------------------------------------------------------------------------- 281 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc----chh----hhHHHHHhc-----CCCcEEE
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS----DSY----STFKSRLEK-----LPDKVIV 693 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~----~~~----~~lk~~L~~-----l~g~V~v 693 (1203)
+|+|+ .+..++.+|+.+.. ..|+||||||+|.++..+. ... ..+-..|.. ..++|+|
T Consensus 282 -----k~vGe--sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 282 -----KYVGE--GARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp -----CSSSH--HHHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred -----ccCCH--HHHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 35555 67789999999999 9999999999999876221 111 122222322 2468999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000978 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1203)
Q Consensus 694 IGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk 773 (1203)
||+||+++..|++ |+|||| |+.+|+|++|+.++|.+||+
T Consensus 352 IaATNrpd~LDpA-------LlRpGR----------------------------------FD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 352 MFATNRPNTLDPA-------LLRPGR----------------------------------IDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp EEECSCTTSBCHH-------HHSTTT----------------------------------CCEEECCCCCCHHHHHHHHH
T ss_pred EeCCCCcccCChh-------hhcccc----------------------------------ccEEEEeCCcCHHHHHHHHH
Confidence 9999999998888 888888 88999999999999999999
Q ss_pred HhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhh
Q 000978 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 853 (1203)
Q Consensus 774 ~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~ 853 (1203)
.++.. +....+++....+-.+.||+|+||..+|.++.+. |+ .. ....++.++|.
T Consensus 391 ~~l~~----~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~-----------Ai----r~-------~~~~it~~Df~ 444 (467)
T 4b4t_H 391 IHSKS----MSVERGIRWELISRLCPNSTGAELRSVCTEAGMF-----------AI----RA-------RRKVATEKDFL 444 (467)
T ss_dssp HHHTT----SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH-----------HH----HH-------TCSSBCHHHHH
T ss_pred HHhcC----CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH-----------HH----Hc-------CCCccCHHHHH
Confidence 88854 4455666666677788999999999999865442 11 11 23457888888
Q ss_pred hhhhHH
Q 000978 854 YGIGIF 859 (1203)
Q Consensus 854 ~al~~l 859 (1203)
.|+..+
T Consensus 445 ~Al~kV 450 (467)
T 4b4t_H 445 KAVDKV 450 (467)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7e-24 Score=249.31 Aligned_cols=213 Identities=13% Similarity=0.187 Sum_probs=170.9
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 000978 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1203)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1203)
+.-+|||++...+ |+.|..|.+++..+|+|+++. .++ .+.+++|||+|||| +++++||||+|++++++|+.+
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEE
Confidence 4457999999999 999999999999999999985 333 35678999999999 999999999999999999999
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000978 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1203)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1203)
+.+.+.
T Consensus 238 ~~~~l~-------------------------------------------------------------------------- 243 (428)
T 4b4t_K 238 NGSEFV-------------------------------------------------------------------------- 243 (428)
T ss_dssp EGGGTC--------------------------------------------------------------------------
T ss_pred ecchhh--------------------------------------------------------------------------
Confidence 864333
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 000978 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1203)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1203)
T Consensus 244 -------------------------------------------------------------------------------- 243 (428)
T 4b4t_K 244 -------------------------------------------------------------------------------- 243 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC-------cc-hhhhHHHHH---hcC--CCcEE
Q 000978 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-------SD-SYSTFKSRL---EKL--PDKVI 692 (1203)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~-------~~-~~~~lk~~L---~~l--~g~V~ 692 (1203)
++|+|+ ....|+.+|+.+.. ..|+||||||+|.++..+ .. ....+-..| +.+ ..+|+
T Consensus 244 -----~~~~Ge--~e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 244 -----HKYLGE--GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp -----CSSCSH--HHHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred -----ccccch--hHHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 234555 66789999999998 999999999999988622 11 111222223 322 45899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEe-CCCHHHHHHH
Q 000978 693 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH-MPQDEALLAS 771 (1203)
Q Consensus 693 vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~-lPd~E~Rl~I 771 (1203)
|||+||+++..||+ |+|||| |+.+|+|+ +|+.++|..|
T Consensus 314 vI~aTN~~~~LD~A-------llRpGR----------------------------------fd~~I~~p~lPd~~~R~~I 352 (428)
T 4b4t_K 314 VIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPSLRDRRERRLI 352 (428)
T ss_dssp EEEEESCSSSCCHH-------HHSSSS----------------------------------EEEEEECCSSCCHHHHHHH
T ss_pred EEEecCChhhcChh-------hhcCCc----------------------------------ceEEEEcCCCCCHHHHHHH
Confidence 99999999999999 889999 77899995 9999999999
Q ss_pred HHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 772 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 772 lk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
|+.++.+ .....+++....+..+.||+|+||..+|.++.+
T Consensus 353 l~~~~~~----~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 353 FGTIASK----MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp HHHHHHS----SCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcC----CCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 9988855 334455666666778889999999999886543
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=8.3e-22 Score=221.24 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=132.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHH----HhcCCceEEEccchhhc
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~ 1008 (1203)
.++++++||+||||||||+||+++|++++.+|+.++++++.+.+.|..+..++.+|..| ++..|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 35568999999999999999999999999999999999999999999999999999988 57789999999999998
Q ss_pred cCCCCCch-hHHHHHHHHHHHHhhcCCc---------ccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHH
Q 000978 1009 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNR 1076 (1203)
Q Consensus 1009 ~~r~~~~~-~~al~~il~eLL~~ldgl~---------~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR 1076 (1203)
+.+..... ......+.+.|+..+++.. .....+++||+|||.++.++++++| ||+..|. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 75432111 1122355677777776442 1134679999999999999999997 8987776 5799999
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHH
Q 000978 1077 AKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNL 1113 (1203)
Q Consensus 1077 ~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L 1113 (1203)
.+|++.++... ++++..++..++||++++|..+
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999888654 3567889999999999888643
No 39
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.81 E-value=8.6e-20 Score=185.94 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=98.1
Q ss_pred ccCCCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCC---------CccceEEEEEEecC-CceEEEEEEecCC
Q 000978 121 FETSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQA---------ISAVLCKIKHVQSE-GSAVAMVESIGSK 190 (1203)
Q Consensus 121 ~~~~~pWgrL~s~~~~~~~l~i~~~~~tvGr~~~cd~~l~~~~---------~s~~~c~i~~~~~~-~~~~~~led~s~n 190 (1203)
..+..+||+|+++....+++.|....|+|||+..||++|.+.. ||..||+|.+...+ +...+||+|+|+|
T Consensus 24 ~~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StN 103 (149)
T 1gxc_A 24 EPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN 103 (149)
T ss_dssp -----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSS
T ss_pred CCCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCC
Confidence 3455689999999999999999999999999999999999985 99999999987643 3346899999999
Q ss_pred ceEEcCeeecCCCeeEccCCCEEEEeecCCeEEEEEecchhh
Q 000978 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLNEV 232 (1203)
Q Consensus 191 Gt~VNg~~~~k~~~~~L~~gDeI~f~~~~~~~yif~~l~~~~ 232 (1203)
||||||++|+++..+.|++||+|.|+.+...+|+|.++..++
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred CeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 999999999999999999999999999989999999987665
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1.3e-18 Score=194.42 Aligned_cols=215 Identities=17% Similarity=0.198 Sum_probs=162.4
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 972 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~--~~P~~gVLL~GPPGTGKT~LArALA~eL-------g~~fi~I~~seL 972 (1203)
+++|++.+++.|.+++..... +..+.+.++ .++..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999998875432 333332221 3445679999999999999999999988 348999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 973 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
.+.++|.....+..+|..+ .++||||||+|.++..+..... ...+++.|+..++.. ..+++||+++|...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~---~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDY---GQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CC---THHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccc---cHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 9999999988888888877 4589999999999755432111 134455555555542 35678888887643
Q ss_pred -----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHH-------cCCCcHHHHHHHHHHHHH
Q 000978 1053 -----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANM-------TDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1053 -----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~-------T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
.+++++++||+.+++|+.|+.+++.+|++.++...++. .+..+..++.. ....+++++.++++.|..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999877654 34445666665 223358999999999998
Q ss_pred HHHHHHHH
Q 000978 1120 RPIKEILE 1127 (1203)
Q Consensus 1120 ~airel~~ 1127 (1203)
.+..+++.
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
No 41
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.75 E-value=1.2e-20 Score=224.35 Aligned_cols=202 Identities=20% Similarity=0.246 Sum_probs=137.6
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccc
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSIT 973 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL~ 973 (1203)
+...|++++|++++++.+.+++.. +. .+ ..|++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~-------~~-~~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL-------IK-SK-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HH-TT-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH-------HH-hC-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 456789999999999998887753 11 12 23558999999999999999999999998 999999999999
Q ss_pred cccccccHHHHHHHHHHH---HhcCCceEEEccchhhccCCCCCchhH---HHHH---------------HHHHHHHhhc
Q 000978 974 SKWFGEGEKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHE---AMRK---------------MKNEFMVNWD 1032 (1203)
Q Consensus 974 s~~~G~~e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~~---al~~---------------il~eLL~~ld 1032 (1203)
+.+.|..+. ++.+|..| +...|+||||||||.+++.+....... ...+ +...++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 89999999 788899999999999998775431111 1111 1122333333
Q ss_pred CCcccCCccEEEEEecCCCCCCcHHHHh--cccc--cccCCCCC--HHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCc
Q 000978 1033 GLRTKDTERILVLAATNRPFDLDEAVIR--RLPR--RLMVNLPD--APNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1033 gl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~--~I~v~~Pd--~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~S 1106 (1203)
......+..++|++|||.++.++++++| ||++ .++++.|+ .++|.+|++.+.. .+++.++..+.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 2111224556677999999999999876 9988 56667774 4778888765442 378899999999
Q ss_pred HHHHHHHHHH
Q 000978 1107 GSDLKNLCVT 1116 (1203)
Q Consensus 1107 g~DL~~L~~~ 1116 (1203)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=5.8e-17 Score=185.47 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=157.2
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccc
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 974 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~seL~s 974 (1203)
..+|++++|.+.+++.+..++.. +..+ ..+.+++||+||||||||++|+++|+.++ .+++.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 45699999999999887665532 1111 23447899999999999999999999996 4888888776443
Q ss_pred ccccc-------------------------------------------------cHHHHHHHHHHHHhc---------CC
Q 000978 975 KWFGE-------------------------------------------------GEKYVKAVFSLASKI---------AP 996 (1203)
Q Consensus 975 ~~~G~-------------------------------------------------~e~~I~~lF~~A~k~---------~P 996 (1203)
.+.+. ....++..+..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 123344444433221 26
Q ss_pred ceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec-----------CCCCCCcHHHHhccccc
Q 000978 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-----------NRPFDLDEAVIRRLPRR 1065 (1203)
Q Consensus 997 sILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT-----------N~p~~Ld~aLlrRFd~~ 1065 (1203)
+||||||||.+. ...++.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 899999999883 23444555555442 2345655554 3477899999999965
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000978 1066 LMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAP 1144 (1203)
Q Consensus 1066 I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~ 1144 (1203)
+.|++|+.+++.+|++..+...+.. .+..++.|++.+.+.+++++.++|+.|+..+..+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-------------------- 313 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-------------------- 313 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--------------------
Confidence 8999999999999999998876554 4556788999988558889999999888765432
Q ss_pred CCCCCCCCccccHHHHHHHHHHh
Q 000978 1145 ALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1145 ~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
....|+.+|+++|+..+
T Consensus 314 ------~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ------KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ------TCSSBCHHHHHHHHHHS
T ss_pred ------CCCCCCHHHHHHHHHHh
Confidence 23579999999999975
No 43
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.74 E-value=2.7e-18 Score=167.53 Aligned_cols=106 Identities=25% Similarity=0.491 Sum_probs=92.5
Q ss_pred CcchhhcccCC--CCcceeeeCCeEEEcCCCCcceeecCC-CCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecC
Q 000978 125 TPWCRLLSQSG--QNSNVPICASIFTVGSSRQCNFPLKDQ-AISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKK 201 (1203)
Q Consensus 125 ~pWgrL~s~~~--~~~~l~i~~~~~tvGr~~~cd~~l~~~-~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k 201 (1203)
+|||+|+++.. ..+.+.|....++|||+..||++|.+. .||..||+|.....++ .+||+|.|+|||||||++|.+
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~--~~~l~D~S~NGt~vng~~l~~ 79 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSG--QVTLEDTSTSGTVINKLKVVK 79 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTC--CEEEEECSSSCCCCCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCC--eEEEEECCcCCcEECCEEcCC
Confidence 69999999965 566899999999999999999999876 8999999999753344 369999888999999999999
Q ss_pred CCeeEccCCCEEEEeecC-----CeEEEEEecchhh
Q 000978 202 NTSCELRSGDEVVFGSLG-----NHAYIFQQLLNEV 232 (1203)
Q Consensus 202 ~~~~~L~~gDeI~f~~~~-----~~~yif~~l~~~~ 232 (1203)
+..+.|++||+|.|+... ..+|+|+++..+.
T Consensus 80 ~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~~ 115 (116)
T 1lgp_A 80 KQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEKQ 115 (116)
T ss_dssp SSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC--
T ss_pred CCcEECCCCCEEEEeccCCCCCceEEEEEEcccccC
Confidence 999999999999999865 7899999886653
No 44
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=8.6e-18 Score=186.86 Aligned_cols=247 Identities=21% Similarity=0.273 Sum_probs=160.9
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 980 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G~~ 980 (1203)
+++|++.+++.+...+..++.+...........++.++||+||||||||++|+++|+.++.+++.++++.+.. .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4678999999988877643222111100000123468999999999999999999999999999999998765 455543
Q ss_pred -HHHHHHHHHHH-----HhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc------cCCccEEEEEe-
Q 000978 981 -EKYVKAVFSLA-----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAA- 1047 (1203)
Q Consensus 981 -e~~I~~lF~~A-----~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~------~~~~~VlVIaT- 1047 (1203)
...++.++..+ ....++||||||||.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566665532 112368999999999976553333333333455667766665321 12346788888
Q ss_pred ---cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHH----H-------HhhCCC---CCchhHHHHHHHcC-------
Q 000978 1048 ---TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV----I-------LAKEDL---SPDVDFDAIANMTD------- 1103 (1203)
Q Consensus 1048 ---TN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~----~-------l~~~~l---~~d~dl~~LA~~T~------- 1103 (1203)
++.+..+++++++||+..+.|++|+.+++.+|++. + +...+. .++..++.|++.+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45678899999999998899999999999999983 2 112221 13444566666551
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1104 GYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1104 G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
+...+.+.++++.+...+..+. .. .......|+.+|+++|+....
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~------------~~--------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSA------------SD--------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHG------------GG--------CTTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCC------------cc--------ccCCEEEEeeHHHHHHHHhhh
Confidence 3466777777776654432110 00 011123599999999988653
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=184.86 Aligned_cols=213 Identities=19% Similarity=0.243 Sum_probs=159.8
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHh-CCeEEEe
Q 000978 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF-GAKLLIF 465 (1203)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~-~a~ll~~ 465 (1203)
+.-+|+|+++..+ +..|..|.+++..+++++++.+ .....++.|||+|||| +++++||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppG--tGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSS--SCHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCC--ccHHHHHHHHHHHcCCCcEEEE
Confidence 3457899998888 9999999999999999999854 2345568999999999 99999999999999 7887777
Q ss_pred ecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000978 466 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 545 (1203)
Q Consensus 466 d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1203)
+.+.+.+
T Consensus 78 ~~~~l~~------------------------------------------------------------------------- 84 (322)
T 1xwi_A 78 SSSDLVS------------------------------------------------------------------------- 84 (322)
T ss_dssp ECCSSCC-------------------------------------------------------------------------
T ss_pred EhHHHHh-------------------------------------------------------------------------
Confidence 6543322
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccc
Q 000978 546 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 625 (1203)
Q Consensus 546 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 625 (1203)
T Consensus 85 -------------------------------------------------------------------------------- 84 (322)
T 1xwi_A 85 -------------------------------------------------------------------------------- 84 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHHHHH----hc---CCCcEEEE
Q 000978 626 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL----EK---LPDKVIVI 694 (1203)
Q Consensus 626 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~~~~~~lk~~L----~~---l~g~V~vI 694 (1203)
+|+++ .+..++.+|+.+.. .+|.||||||||.+...+ .+....+...| +. ..++|+||
T Consensus 85 ------~~~g~--~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 85 ------KWLGE--SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp ------SSCCS--CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred ------hhhhH--HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 12222 33468888888877 899999999999987532 22222233222 22 25789999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 000978 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1203)
Q Consensus 695 Gst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~ 774 (1203)
|+||+++. +|.+|.+||+..++|++|+.++|..||+.
T Consensus 154 ~atn~~~~-------------------------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~ 190 (322)
T 1xwi_A 154 GATNIPWV-------------------------------------------LDSAIRRRFEKRIYIPLPEPHARAAMFKL 190 (322)
T ss_dssp EEESCTTT-------------------------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHHH
T ss_pred EecCCccc-------------------------------------------CCHHHHhhcCeEEEeCCcCHHHHHHHHHH
Confidence 99998863 45678889999999999999999999998
Q ss_pred hhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcccccc
Q 000978 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 775 ~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
++......+ .+.+....+..+.||+|+||..+|..+.+.
T Consensus 191 ~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 191 HLGTTQNSL---TEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp HHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred HHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 875422111 223344455667899999999999977663
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=3e-16 Score=177.90 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=141.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|++++|.+.+++.+...+..... . ..+..+|||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 3799999999999999988864211 1 23446899999999999999999999999999999987653
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc--------------cCCccEE
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT--------------KDTERIL 1043 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~--------------~~~~~Vl 1043 (1203)
....+..++.. ...+++||||||+.+. ..+...|+..++.... ....+++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 12233333332 2457899999999882 1222233333322110 0112589
Q ss_pred EEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000978 1044 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1203)
Q Consensus 1044 VIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~ 1120 (1203)
+|++||....+++++++||+.++.|+.|+.+++..+++.++...+.. .+..+..|++.+.| ..+++.+++..+...
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876654 45557788887766 556777877776543
No 47
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=182.03 Aligned_cols=216 Identities=19% Similarity=0.257 Sum_probs=147.9
Q ss_pred ccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 389 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 389 i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
-+|+|+++..+ ++.|..|.+++..++++++..+.. +| ...++|||+||+| +++++|+||||...++.++.++..
T Consensus 5 ~~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~~-~l-~~~~GvlL~Gp~G--tGKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 5 PNVTWADIGAL--EDIREELTMAILAPVRNPDQFKAL-GL-VTPAGVLLAGPPG--CGKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp -------CCHH--HHHHHHHHHHHTHHHHSHHHHHHT-TC-CCCSEEEEESSTT--SCHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHc-CC-CCCCeEEEECCCC--CcHHHHHHHHHHHcCCCEEEEEcH
Confidence 36899998887 999999999999999998875322 13 3345699999999 999999999999998887777642
Q ss_pred cccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000978 469 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 548 (1203)
Q Consensus 469 ~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 548 (1203)
.+..
T Consensus 79 ~l~~---------------------------------------------------------------------------- 82 (274)
T 2x8a_A 79 ELLN---------------------------------------------------------------------------- 82 (274)
T ss_dssp TTCS----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccccc
Q 000978 549 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 628 (1203)
Q Consensus 549 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 628 (1203)
T Consensus 83 -------------------------------------------------------------------------------- 82 (274)
T 2x8a_A 83 -------------------------------------------------------------------------------- 82 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc-----chhhhHHHHHhcCC-----CcEEEEeeec
Q 000978 629 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSYSTFKSRLEKLP-----DKVIVIGSHT 698 (1203)
Q Consensus 629 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~-----~~~~~lk~~L~~l~-----g~V~vIGst~ 698 (1203)
+|+++ .+..|..+|+.+.. ..|.|+||||++.+...+. .....+...|..++ ..+++|+++|
T Consensus 83 ---~~~~~--~~~~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 83 ---MYVGE--SERAVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp ---STTHH--HHHHHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred ---hhhhH--HHHHHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 12222 34467788887766 7899999999998654211 11122233333332 3789999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 699 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 699 ~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+++..||+ |+|||| |+..|+|++|+.++|.+||+.++..
T Consensus 155 ~p~~LD~a-------l~r~gR----------------------------------fd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 155 RPDIIDPA-------ILRPGR----------------------------------LDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp CGGGSCHH-------HHSTTS----------------------------------SCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred ChhhCCHh-------hcCccc----------------------------------CCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 99877777 677777 8899999999999999999987754
Q ss_pred hhh-hhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 779 DSE-TLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 779 ~~e-~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
... .+....++..++..+.+.||+|+||..+|.++.+
T Consensus 194 ~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 194 GTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp TBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred ccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 211 1222233444443344669999999999987654
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.67 E-value=2.6e-16 Score=173.54 Aligned_cols=177 Identities=22% Similarity=0.270 Sum_probs=126.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccccc----HHHHHHHHHHHHhcCCceEEEccchhhcc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG----EKYVKAVFSLASKIAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~----e~~I~~lF~~A~k~~PsILfIDEID~L~~ 1009 (1203)
.++.++||+||||||||++|+++|+.++.+|+.+++++. ++|.. ...++.+|..+....++||||||||.|++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc
Confidence 455789999999999999999999999999999988752 33333 35678889988888899999999999976
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcH-HHHhcccccccCCCCCHHHHHHHHHHHHhhCC
Q 000978 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1088 (1203)
Q Consensus 1010 ~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~-aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~ 1088 (1203)
.+.... .....+++.|...+++... ...+++||+|||.++.+++ .+++||...|.++.++ +|.+|...+.....
T Consensus 139 ~~~~~~--~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~--~r~~i~~i~~~~~~ 213 (272)
T 1d2n_A 139 YVPIGP--RFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA--TGEQLLEALELLGN 213 (272)
T ss_dssp CBTTTT--BCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE--EHHHHHHHHHHHTC
T ss_pred cCCCCh--hHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc--HHHHHHHHHHhcCC
Confidence 543211 1123445555555555432 3467899999999888887 6778998777775544 44445544443333
Q ss_pred CCCchhHHHHHHHcCCC----cHHHHHHHHHHHHH
Q 000978 1089 LSPDVDFDAIANMTDGY----SGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1089 l~~d~dl~~LA~~T~G~----Sg~DL~~L~~~Aa~ 1119 (1203)
..+.++..+++.+.|| ..+++.++++.|..
T Consensus 214 -~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 214 -FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp -SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 3566788899999887 45666666665543
No 49
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=1.1e-16 Score=194.44 Aligned_cols=230 Identities=19% Similarity=0.249 Sum_probs=149.9
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-----
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 974 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s----- 974 (1203)
..++.|++++++.+.+.+...... . ..+...+||+||||||||+||++||..++.+++.+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------K--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------S--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------c--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 457899999999998776532111 1 124568999999999999999999999999999999876533
Q ss_pred ----ccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc-----------CC
Q 000978 975 ----KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DT 1039 (1203)
Q Consensus 975 ----~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~-----------~~ 1039 (1203)
.++|.....+.+.|..+....| ||||||||.+...+. ....+.|+..++..... +.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4556666667777877766555 999999999854321 12345566666543211 11
Q ss_pred ccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh-----hCCCC------CchhHHHHHHHcCC-CcH
Q 000978 1040 ERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-----KEDLS------PDVDFDAIANMTDG-YSG 1107 (1203)
Q Consensus 1040 ~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~-----~~~l~------~d~dl~~LA~~T~G-~Sg 1107 (1203)
.+++||+|||.++.+++++++|| .+|.|+.|+.+++.+|++.++. ..++. .+..+..|+....+ ...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 57899999999999999999999 5799999999999999998762 22321 23345555553332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000978 1108 SDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1108 ~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
++|++.+..+...+..+.+. .......|+.+|+.+++..-
T Consensus 302 R~L~~~i~~~~~~aa~~~~~--------------------~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVA--------------------EERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------------------TCCSCCEECTTTTHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHh--------------------cCCcceecCHHHHHHHhCCc
Confidence 66666655555433332211 01123568999999988654
No 50
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=1.8e-16 Score=182.45 Aligned_cols=221 Identities=22% Similarity=0.310 Sum_probs=148.0
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc-ccccc
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGEG 980 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k-~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~-~~G~~ 980 (1203)
++|++.+++.+...+.....+...... .....+..+|||+||||||||++|++||+.++.+|+.++++++... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 578999999988887532222111000 1223356789999999999999999999999999999999988643 77765
Q ss_pred -HHHHHHHHHHH----HhcCCceEEEccchhhccCCCCCc--hhHHHHHHHHHHHHhhcCCcc---------c-------
Q 000978 981 -EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRT---------K------- 1037 (1203)
Q Consensus 981 -e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~--~~~al~~il~eLL~~ldgl~~---------~------- 1037 (1203)
...+..+|..+ ....++||||||||.+...+.... .......+.+.|+..|++... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677777665 445679999999999986654332 112223467777777774210 0
Q ss_pred -CCccEEEEEecCCC----------CC-----------------------------------CcHHHHhcccccccCCCC
Q 000978 1038 -DTERILVLAATNRP----------FD-----------------------------------LDEAVIRRLPRRLMVNLP 1071 (1203)
Q Consensus 1038 -~~~~VlVIaTTN~p----------~~-----------------------------------Ld~aLlrRFd~~I~v~~P 1071 (1203)
...++++|+++|.. .. +.++|++||+.++.|.+|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 12344555555431 11 789999999999999999
Q ss_pred CHHHHHHHHHH----HHhh-------CCCC---CchhHHHHHHH--cCCCcHHHHHHHHHHHHHHHHH
Q 000978 1072 DAPNRAKILQV----ILAK-------EDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIK 1123 (1203)
Q Consensus 1072 d~eeR~eIL~~----~l~~-------~~l~---~d~dl~~LA~~--T~G~Sg~DL~~L~~~Aa~~air 1123 (1203)
+.+++.+|+.. ++.. .+.. .+..++.|+.. ...+..++|+++++.+...++.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHH
Confidence 99999999986 3221 1221 33445666653 3345567888888877766544
No 51
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.66 E-value=6.2e-16 Score=175.36 Aligned_cols=213 Identities=17% Similarity=0.206 Sum_probs=159.2
Q ss_pred ccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 387 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 387 ~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+.-+++|+++..+ +..|..|.+++..+++++++.+. .....+.|||+|||| +++++||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 4456889998887 99999999999999999988643 234578999999999 9999999999999999998887
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
.+.+.+
T Consensus 84 ~~~l~~-------------------------------------------------------------------------- 89 (322)
T 3eie_A 84 SSDLVS-------------------------------------------------------------------------- 89 (322)
T ss_dssp HHHHHT--------------------------------------------------------------------------
T ss_pred hHHHhh--------------------------------------------------------------------------
Confidence 643332
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
T Consensus 90 -------------------------------------------------------------------------------- 89 (322)
T 3eie_A 90 -------------------------------------------------------------------------------- 89 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHH----HHHh---cCCCcEEEEe
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFK----SRLE---KLPDKVIVIG 695 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~~~~~~lk----~~L~---~l~g~V~vIG 695 (1203)
+|+++ .+..++.+|+.+.. ..|.||||||||.+...+ .+....++ ..|+ ...++|+|||
T Consensus 90 -----~~~g~--~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 159 (322)
T 3eie_A 90 -----KWMGE--SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159 (322)
T ss_dssp -----TTGGG--HHHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEE
T ss_pred -----cccch--HHHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 11122 34568888888887 899999999999987632 22222222 2332 2357899999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 000978 696 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1203)
Q Consensus 696 st~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~ 775 (1203)
+||+++. +|.+|.+||...++|++|+.++|.+||+.+
T Consensus 160 atn~~~~-------------------------------------------ld~al~~Rf~~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 160 ATNIPWQ-------------------------------------------LDSAIRRRFERRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp EESCGGG-------------------------------------------SCHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred ecCChhh-------------------------------------------CCHHHHcccCeEEEeCCCCHHHHHHHHHHH
Confidence 9998763 466788899999999999999999999987
Q ss_pred hhhhhhhhhccCCchhHHHHhhccCCCcccccchhcccccc
Q 000978 776 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 776 Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
+..... .. .+......+-.+.||+++||..+|..+.+.
T Consensus 197 ~~~~~~--~~-~~~~l~~la~~t~g~sg~di~~l~~~a~~~ 234 (322)
T 3eie_A 197 VGDTPC--VL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 234 (322)
T ss_dssp HTTCCC--CC-CHHHHHHHHHTTTTCCHHHHHHHHHHHTTH
T ss_pred hccCCC--CC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 754211 11 122334445567899999999999877663
No 52
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.66 E-value=4.6e-16 Score=179.18 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=155.5
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 000978 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1203)
Q Consensus 377 ~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1203)
+.+. ..+..+.-.++|+++..+ +..|..|.+++..+++++++.+. ....++.|||+||+| +++++||||||+
T Consensus 35 ~~~~-~~~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppG--tGKT~la~ala~ 106 (355)
T 2qp9_X 35 GALS-SAILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAVAT 106 (355)
T ss_dssp -------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTT--SCHHHHHHHHHH
T ss_pred HHHh-hhhcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCC--CcHHHHHHHHHH
Confidence 3444 333445668999998877 99999999999999999988542 345667899999999 999999999999
Q ss_pred HhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000978 457 YFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMET 536 (1203)
Q Consensus 457 ~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1203)
+++++++.++.+.|.+.
T Consensus 107 ~~~~~~~~v~~~~l~~~--------------------------------------------------------------- 123 (355)
T 2qp9_X 107 EANSTFFSVSSSDLVSK--------------------------------------------------------------- 123 (355)
T ss_dssp HHTCEEEEEEHHHHHSC---------------------------------------------------------------
T ss_pred HhCCCEEEeeHHHHhhh---------------------------------------------------------------
Confidence 99999998876443320
Q ss_pred cccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCC
Q 000978 537 DTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCE 616 (1203)
Q Consensus 537 ~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~ 616 (1203)
T Consensus 124 -------------------------------------------------------------------------------- 123 (355)
T 2qp9_X 124 -------------------------------------------------------------------------------- 123 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC----CcchhhhHHHH----HhcC-
Q 000978 617 GGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSR----LEKL- 687 (1203)
Q Consensus 617 ~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~----~~~~~~~lk~~----L~~l- 687 (1203)
|+++ .+..++.+|+.+.. ..|.||||||||.+... ..+....+... |+.+
T Consensus 124 ----------------~~g~--~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 124 ----------------WMGE--SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp ----------------C-----CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred ----------------hcch--HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 1111 23357788888877 89999999999997752 22222233332 3322
Q ss_pred --CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 000978 688 --PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 765 (1203)
Q Consensus 688 --~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~ 765 (1203)
..+|+|||+||+++. ++.+|.+||...+.|++|+.
T Consensus 183 ~~~~~v~vI~atn~~~~-------------------------------------------ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQ-------------------------------------------LDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp ---CCEEEEEEESCGGG-------------------------------------------SCHHHHHTCCEEEECCCCCH
T ss_pred ccCCCeEEEeecCCccc-------------------------------------------CCHHHHcccCEEEEeCCcCH
Confidence 468999999998763 45677889999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcccccc
Q 000978 766 EALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 766 E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
++|..||+.++..... .. .+.+....+..+.||+|+||..+|..+.+.
T Consensus 220 ~~r~~il~~~l~~~~~--~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 220 AARTTMFEINVGDTPS--VL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp HHHHHHHHHHHTTSCB--CC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC--CC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999987754211 11 223344445567899999999999876553
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.64 E-value=6.6e-16 Score=183.10 Aligned_cols=224 Identities=18% Similarity=0.283 Sum_probs=157.2
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 000978 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1203)
Q Consensus 375 ~~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1203)
+.+.+...|+ .+.-.++|+++..+ +..|..|.+++..+++++++.. .....++.|||+|||| +++++|||||
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTTTS---GGGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHhh---ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 3344444444 45668999998877 9999999999999999998854 2335568999999999 9999999999
Q ss_pred HhHh-CCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000978 455 AHYF-GAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 533 (1203)
Q Consensus 455 A~~~-~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1203)
|+++ +++++.++.+.+.+
T Consensus 188 a~~~~~~~~~~v~~~~l~~------------------------------------------------------------- 206 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVS------------------------------------------------------------- 206 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHh-------------------------------------------------------------
Confidence 9999 88888877644432
Q ss_pred ccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCC
Q 000978 534 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 613 (1203)
Q Consensus 534 ~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~ 613 (1203)
+|+|
T Consensus 207 ------------------------~~~g---------------------------------------------------- 210 (444)
T 2zan_A 207 ------------------------KWLG---------------------------------------------------- 210 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------hhcc----------------------------------------------------
Confidence 1111
Q ss_pred CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHHHHH-hcC-
Q 000978 614 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL-EKL- 687 (1203)
Q Consensus 614 ~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~~~~~~lk~~L-~~l- 687 (1203)
+ .+..+..+|+.+.. ..|.||||||||.+...+ .+....++..| ..+
T Consensus 211 ----------------------~--~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 211 ----------------------E--SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT
T ss_pred ----------------------h--HHHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh
Confidence 0 00136677887776 899999999999986522 23333344333 222
Q ss_pred -----CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeC
Q 000978 688 -----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHM 762 (1203)
Q Consensus 688 -----~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~l 762 (1203)
+++|+|||+||+++. ++.+|.+||+..+.|++
T Consensus 264 ~~~~~~~~v~vI~atn~~~~-------------------------------------------ld~al~rRf~~~i~i~~ 300 (444)
T 2zan_A 264 GVGVDNDGILVLGATNIPWV-------------------------------------------LDSAIRRRFEKRIYIPL 300 (444)
T ss_dssp CSSCCCSSCEEEEEESCGGG-------------------------------------------SCHHHHTTCCEEEECCC
T ss_pred CcccCCCCEEEEecCCCccc-------------------------------------------cCHHHHhhcceEEEeCC
Confidence 468999999998753 45677889999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhcccccc
Q 000978 763 PQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 816 (1203)
Q Consensus 763 Pd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~l 816 (1203)
|+.++|..||+.++..... .. .+.+....+..+.||+|+||..+|..+.+.
T Consensus 301 P~~~~r~~il~~~l~~~~~--~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 301 PEAHARAAMFRLHLGSTQN--SL-TEADFQELGRKTDGYSGADISIIVRDALMQ 351 (444)
T ss_dssp CCHHHHHHHHHHHHTTSCE--EC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHTH
T ss_pred cCHHHHHHHHHHHHhcCCC--CC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999988754211 11 223344455667899999999999877663
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.63 E-value=1.8e-15 Score=179.74 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=89.7
Q ss_pred ceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEe---------cC---CCCCCcHHHHhcccc
Q 000978 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA---------TN---RPFDLDEAVIRRLPR 1064 (1203)
Q Consensus 997 sILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaT---------TN---~p~~Ld~aLlrRFd~ 1064 (1203)
.|+||||+|.|- ....+.|+..++.- ..+++|++| ++ .+..|++.+++||..
T Consensus 297 ~VliIDEa~~l~------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 297 GVLFVDEVHMLD------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp CEEEEESGGGCB------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 699999999882 34556666666643 234656566 33 267899999999965
Q ss_pred cccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000978 1065 RLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT-DGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKP 1142 (1203)
Q Consensus 1065 ~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T-~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~ 1142 (1203)
+.|++|+.++..++++..+...+.. .+..+..+++.+ .| +++....+++.|...+..+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~------------------ 420 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN------------------ 420 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT------------------
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc------------------
Confidence 6999999999999999988765543 444567777777 55 5556666666664433221
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHh
Q 000978 1143 APALSGCADIRPLNMDDFKYAHERV 1167 (1203)
Q Consensus 1143 ~~~~~~~~~~r~Lt~eDf~~Al~~v 1167 (1203)
....|+.+|+.+|+..+
T Consensus 421 --------~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 421 --------GKDSIEKEHVEEISELF 437 (456)
T ss_dssp --------TCSSBCHHHHHHHHHHS
T ss_pred --------CCCccCHHHHHHHHHHh
Confidence 22579999999999876
No 55
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.63 E-value=2.2e-15 Score=169.14 Aligned_cols=201 Identities=21% Similarity=0.256 Sum_probs=139.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|++++|.+..++.+...+.... .. ..+..++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------AR--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------HH--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------cc--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 368899999999999888775311 10 123467999999999999999999999999999999876532
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhc-CCcc------cCCccEEEEEecCC
Q 000978 978 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRT------KDTERILVLAATNR 1050 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ld-gl~~------~~~~~VlVIaTTN~ 1050 (1203)
...+...|..+ ...+++||||||+.+. ...+..+..+++.....+- +... ....++.+|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 12222222221 1357899999999872 1112222222222110000 0000 01135789999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~ 1120 (1203)
+..+++++.+||+.++.++.|+.+++.++++.++...+.. .+..+..|+..+.| .++++.+++..+...
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999998766544 44567888998877 456888887776543
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.62 E-value=5.5e-16 Score=174.30 Aligned_cols=214 Identities=20% Similarity=0.330 Sum_probs=157.8
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
.-.++|+++..+ +..|..|.+.+-.++++++.. +++ ...++.|||+||+| +++++||||||++.+++++.++
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~G--tGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSS--SSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCC--cCHHHHHHHHHHHhCCCEEEEE
Confidence 346899998777 999999999999999998864 332 24567899999999 9999999999999999999887
Q ss_pred cccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000978 467 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 546 (1203)
Q Consensus 467 ~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 546 (1203)
...+..
T Consensus 82 ~~~l~~-------------------------------------------------------------------------- 87 (301)
T 3cf0_A 82 GPELLT-------------------------------------------------------------------------- 87 (301)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred hHHHHh--------------------------------------------------------------------------
Confidence 643321
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccccccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 626 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 626 (1203)
+|+|
T Consensus 88 -----------~~~g----------------------------------------------------------------- 91 (301)
T 3cf0_A 88 -----------MWFG----------------------------------------------------------------- 91 (301)
T ss_dssp -----------HHHT-----------------------------------------------------------------
T ss_pred -----------hhcC-----------------------------------------------------------------
Confidence 0111
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC-----------cchhhhHHHHHhcC--CCcEEE
Q 000978 627 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-----------SDSYSTFKSRLEKL--PDKVIV 693 (1203)
Q Consensus 627 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~-----------~~~~~~lk~~L~~l--~g~V~v 693 (1203)
+ .+..+..+|+.+.. ..|.||||||||.+.... ....+.|-..|+.+ ..+|+|
T Consensus 92 ---------~--~~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 92 ---------E--SEANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp ---------T--CTTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred ---------c--hHHHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 0 00136677777776 789999999999977411 11223344444433 358999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000978 694 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 773 (1203)
Q Consensus 694 IGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk 773 (1203)
||+||+++..+++ |+|+|| |+..|+|++|+.++|.+||+
T Consensus 158 i~atn~~~~ld~a-------l~r~gR----------------------------------f~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 158 IGATNRPDIIDPA-------ILRPGR----------------------------------LDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp EEEESCGGGSCGG-------GGSTTS----------------------------------SCEEEECCCCCHHHHHHHHH
T ss_pred EEecCCccccChH-------HhcCCc----------------------------------cceEEecCCcCHHHHHHHHH
Confidence 9999999876666 566666 87899999999999999999
Q ss_pred HhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccc
Q 000978 774 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 817 (1203)
Q Consensus 774 ~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls 817 (1203)
.++.+. ....+++....+..+.||+|.||..+|..+.+..
T Consensus 197 ~~l~~~----~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 197 ANLRKS----PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236 (301)
T ss_dssp HHHTTS----CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHccC----CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 877552 2234455555566788999999999988765543
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.61 E-value=1.2e-14 Score=172.10 Aligned_cols=220 Identities=14% Similarity=0.228 Sum_probs=146.2
Q ss_pred Cccccccc-cc--HHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 000978 897 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 968 (1203)
Q Consensus 897 ~vt~~dI~-Gl--e~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~ 968 (1203)
..+|++++ |. ......+..++.. .+ . ..++||+||||+|||+||+++++++ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 46788876 43 3334444444332 11 1 3679999999999999999999998 88999999
Q ss_pred ccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec
Q 000978 969 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048 (1203)
Q Consensus 969 ~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT 1048 (1203)
+..+...+.+.........|.......+.||||||++.+.+++ ..+..+..+++.+. ..+..+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8876544332222111123333333368999999999985321 12222223333221 12345666666
Q ss_pred CCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 000978 1049 NRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1122 (1203)
Q Consensus 1049 N~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~ai 1122 (1203)
+.+.. +++.+++||. .++.+++|+.++|.+|++..+...++. ++..+..|+..+.| +.+++.+++..+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 65554 8899999996 789999999999999999998765543 34457889998876 77788888877765432
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcc
Q 000978 1123 KEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCA 1169 (1203)
Q Consensus 1123 rel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~p 1169 (1203)
. ...+|+++++.+++..+.+
T Consensus 315 ~---------------------------~~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 315 T---------------------------TGKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp H---------------------------SSSCCCHHHHHHHTSTTTC
T ss_pred H---------------------------hCCCCCHHHHHHHHHHHhh
Confidence 1 1235888888888877653
No 58
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.61 E-value=3.6e-14 Score=148.09 Aligned_cols=199 Identities=21% Similarity=0.222 Sum_probs=139.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL 972 (1203)
.+|+++.|.+...+.+.+.+.. . ...++||+||||+|||++|+++++.+ ...++.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 4688999999999999888763 1 12359999999999999999999986 456888887654
Q ss_pred ccccccccHHHHHHHHHHHH------hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 973 TSKWFGEGEKYVKAVFSLAS------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~------k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
.+ ...+...+.... ...+.||||||+|.+.. ...+.|+..++.. ..++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~----~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMY----SKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HHHHHHHHHHHHT----TTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HHHHHHHHHHHhc----CCCCeEEE
Confidence 32 122222222221 24578999999998831 1122233333322 34678888
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 1125 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel 1125 (1203)
+||.+..+++.+.+||. .+.+++|+.+++.++++.++...+.. .+..+..|+..+.| ..+.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~---- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG---- 211 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC----
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC----
Confidence 99999999999999996 89999999999999999988765543 44556778887776 4445555554443211
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 000978 1126 LEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 1165 (1203)
Q Consensus 1126 ~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~ 1165 (1203)
..|+.+|+++++.
T Consensus 212 ---------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---------------------------EVVDADTIYQITA 224 (226)
T ss_dssp ---------------------------SCBCHHHHHHHHH
T ss_pred ---------------------------ceecHHHHHHHhc
Confidence 3699999998875
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=2.7e-14 Score=162.90 Aligned_cols=224 Identities=18% Similarity=0.157 Sum_probs=151.0
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecc
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 970 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~s 970 (1203)
.+++.|.+...+.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 36789999999988887643111 1234689999999999999999999988 8899999987
Q ss_pred ccccc----------------cccc-cHHHHHHHHHHHHhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhc
Q 000978 971 SITSK----------------WFGE-GEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1032 (1203)
Q Consensus 971 eL~s~----------------~~G~-~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ld 1032 (1203)
...+. ..|. ....+..++...... .+.||||||+|.+...+ . ...++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~----~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---G----GQDLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---T----HHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---C----CChHHHhHhhchh
Confidence 54221 1122 223344555544333 37799999999885321 0 1234445554444
Q ss_pred CCcccCCccEEEEEecCCC---CCCcHHHHhcccc-cccCCCCCHHHHHHHHHHHHhh--CC-CCCchhHHHHHHHcC--
Q 000978 1033 GLRTKDTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAK--ED-LSPDVDFDAIANMTD-- 1103 (1203)
Q Consensus 1033 gl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~-~I~v~~Pd~eeR~eIL~~~l~~--~~-l~~d~dl~~LA~~T~-- 1103 (1203)
.... ..++.+|++||.+ ..+++.+.+||.. .+.|++|+.+++.+|++..+.. .. ...+..++.+++.+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3210 3578899999887 7889999999975 8999999999999999998864 21 223445777888877
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcc
Q 000978 1104 -GYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCA 1169 (1203)
Q Consensus 1104 -G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~p 1169 (1203)
| .++.+.+++..|+..+..+ ....|+.+|+.+|+..+..
T Consensus 239 ~G-~~r~~~~~l~~a~~~a~~~--------------------------~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 239 HG-DARRALDLLRVAGEIAERR--------------------------REERVRREHVYSARAEIER 278 (387)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHT--------------------------TCSCBCHHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHhh
Confidence 6 4556677777776543221 1135788888888776643
No 60
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.61 E-value=1.2e-14 Score=171.44 Aligned_cols=180 Identities=24% Similarity=0.369 Sum_probs=132.7
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc-
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 979 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s-~~~G~- 979 (1203)
+|+|++++++.|...+..+..++..+.......+++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6789999999999988776666555443333345688999999999999999999999999999999998887 48885
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000978 980 GEKYVKAVFSLAS------------------------------------------------------------------- 992 (1203)
Q Consensus 980 ~e~~I~~lF~~A~------------------------------------------------------------------- 992 (1203)
.+..++.+|..|.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 6777666665441
Q ss_pred -----------------------------------------------------------------------hc-CCceEE
Q 000978 993 -----------------------------------------------------------------------KI-APSVIF 1000 (1203)
Q Consensus 993 -----------------------------------------------------------------------k~-~PsILf 1000 (1203)
+. ...||+
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 01 235899
Q ss_pred EccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcc------cCCccEEEEEec----CCCCCCcHHHHhcccccccCCC
Q 000978 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNL 1070 (1203)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~~I~v~~ 1070 (1203)
+||||.+..........-...-+.+.||..+++-.. -+..++++|+|. +.+.++-|+|+.||+.++.|+.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 999999975533222222223466778887877422 135789999987 2444566899999999999999
Q ss_pred CCHHHHHHHHH
Q 000978 1071 PDAPNRAKILQ 1081 (1203)
Q Consensus 1071 Pd~eeR~eIL~ 1081 (1203)
++.++..+|+.
T Consensus 336 lt~~e~~~Il~ 346 (444)
T 1g41_A 336 LSAADFERILT 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999994
No 61
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.60 E-value=1.5e-15 Score=154.90 Aligned_cols=106 Identities=25% Similarity=0.384 Sum_probs=89.0
Q ss_pred ccCCCcchhhcccCC-CCcceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEe--cC--CceEEEEEEecCCceEE
Q 000978 121 FETSTPWCRLLSQSG-QNSNVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ--SE--GSAVAMVESIGSKGLQV 194 (1203)
Q Consensus 121 ~~~~~pWgrL~s~~~-~~~~l~i~~-~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~--~~--~~~~~~led~s~nGt~V 194 (1203)
.....+||+|+...+ ....+.|.. ..|+|||+..|||+|.+..||..||+|.... .+ ....++|+|+|+|||||
T Consensus 12 ~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~V 91 (151)
T 2jqj_A 12 SSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFI 91 (151)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEE
T ss_pred CCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEE
Confidence 345578999998865 456888884 8999999999999999999999999999842 11 33468999999999999
Q ss_pred cCeeecCCCeeEccCCCEEEEeecCCeEEEEEecc
Q 000978 195 NGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLL 229 (1203)
Q Consensus 195 Ng~~~~k~~~~~L~~gDeI~f~~~~~~~yif~~l~ 229 (1203)
||++|.++ .+.|++||+|.|+.. ..|+|+...
T Consensus 92 Ng~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~ 123 (151)
T 2jqj_A 92 NGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYAS 123 (151)
T ss_dssp TTEECCSS-CEEECSSEEEEETTT--EEEEEEECS
T ss_pred CCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcC
Confidence 99999999 999999999999872 467777653
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.60 E-value=7.3e-15 Score=176.11 Aligned_cols=209 Identities=17% Similarity=0.289 Sum_probs=153.4
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 000978 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1203)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1203)
.++|+++... +..+..|.+.+...++++++.+... ...++.|||+||+| +++++||||||++++++++.++...
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppG--tGKT~lAraia~~~~~~fv~vn~~~ 273 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTT--SSHHHHHHHHHHHCSSEEEEEEHHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCC--CCHHHHHHHHHHHhCCCEEEEEchH
Confidence 3678887766 8889999999998999988753211 34567899999999 9999999999999999999888643
Q ss_pred ccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 000978 470 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 549 (1203)
Q Consensus 470 ~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 549 (1203)
+...
T Consensus 274 l~~~---------------------------------------------------------------------------- 277 (489)
T 3hu3_A 274 IMSK---------------------------------------------------------------------------- 277 (489)
T ss_dssp HHTS----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 3320
Q ss_pred ccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccccc
Q 000978 550 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 629 (1203)
Q Consensus 550 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 629 (1203)
T Consensus 278 -------------------------------------------------------------------------------- 277 (489)
T 3hu3_A 278 -------------------------------------------------------------------------------- 277 (489)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHHH----HHhc--CCCcEEEEeeecc
Q 000978 630 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKS----RLEK--LPDKVIVIGSHTH 699 (1203)
Q Consensus 630 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~~~~~~lk~----~L~~--l~g~V~vIGst~~ 699 (1203)
|.++ .+..+..+|+.+.. ..|.||||||||.+...+ .+....++. .|+. ...+|+|||+||+
T Consensus 278 ---~~g~--~~~~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 278 ---LAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp ---CTTH--HHHHHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred ---hcch--hHHHHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 0011 22346677777777 789999999999988633 222223333 3332 3568999999999
Q ss_pred CCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhh
Q 000978 700 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 779 (1203)
Q Consensus 700 ~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~ 779 (1203)
++..+++ |+|+|| |...|+|++|+.++|.+||+.++..
T Consensus 350 ~~~Ld~a-------l~r~gR----------------------------------f~~~i~i~~P~~~eR~~IL~~~~~~- 387 (489)
T 3hu3_A 350 PNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN- 387 (489)
T ss_dssp GGGBCGG-------GGSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHHTTT-
T ss_pred ccccCHH-------HhCCCc----------------------------------CceEEEeCCCCHHHHHHHHHHHHhc-
Confidence 9766666 666666 8789999999999999999987654
Q ss_pred hhhhhccCCchhHHHHhhccCCCcccccchhccc
Q 000978 780 SETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1203)
Q Consensus 780 ~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d 813 (1203)
.....+......+..+.||++.||..+|..+
T Consensus 388 ---~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A 418 (489)
T 3hu3_A 388 ---MKLADDVDLEQVANETHGHVGADLAALCSEA 418 (489)
T ss_dssp ---SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ---CCCcchhhHHHHHHHccCCcHHHHHHHHHHH
Confidence 3333444445556677899999888887744
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.59 E-value=5.3e-14 Score=149.77 Aligned_cols=204 Identities=19% Similarity=0.160 Sum_probs=137.4
Q ss_pred cccccccc---cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000978 898 VTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1203)
Q Consensus 898 vt~~dI~G---le~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se 971 (1203)
.+|+++.+ .+.+.+.+..++.. ....++||+||||||||++|+++++++ +.+++.+++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 56777775 34666666665542 123689999999999999999999987 48899999887
Q ss_pred cccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccE-EEEEecCC
Q 000978 972 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI-LVLAATNR 1050 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~V-lVIaTTN~ 1050 (1203)
+....... +. ....+.||||||++.+.... .....+..+++.+. ....+ +|++++..
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVA---------EQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHH---------HHCSCEEEEEESSC
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccCCH---HHHHHHHHHHHHHH---------HcCCCeEEEEcCCC
Confidence 65432111 11 11347899999999883211 00222223322221 11233 45544444
Q ss_pred CC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 000978 1051 PF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1124 (1203)
Q Consensus 1051 p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~aire 1124 (1203)
+. .+.+.+.+||. .++.++.|+.+++.++++.++...++. .+..++.|+..+.| ..+++.++++.+...+..+
T Consensus 149 ~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~ 227 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH 227 (242)
T ss_dssp TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh
Confidence 43 45689999986 789999999999999999998866554 44557888888876 6778888887776544221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 000978 1125 ILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 1165 (1203)
Q Consensus 1125 l~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~ 1165 (1203)
.+.|+.+|++++++
T Consensus 228 ---------------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ---------------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ---------------------------TCCCCHHHHHHHHT
T ss_pred ---------------------------CCCCcHHHHHHHhh
Confidence 14699999998875
No 64
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.59 E-value=3.8e-15 Score=147.68 Aligned_cols=101 Identities=23% Similarity=0.387 Sum_probs=89.2
Q ss_pred CcchhhcccCCCCcceeeeCC-------------eEEEcCCCCcceeecCC-CCccceEEEEEEecCCceEEEEEEecCC
Q 000978 125 TPWCRLLSQSGQNSNVPICAS-------------IFTVGSSRQCNFPLKDQ-AISAVLCKIKHVQSEGSAVAMVESIGSK 190 (1203)
Q Consensus 125 ~pWgrL~s~~~~~~~l~i~~~-------------~~tvGr~~~cd~~l~~~-~~s~~~c~i~~~~~~~~~~~~led~s~n 190 (1203)
..||||.++..++|++++..+ .++|||+..||+.|.+. .+|..||+|.... ++ .+||+|+|+|
T Consensus 3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~-~g--~~~l~DlS~N 79 (127)
T 1g6g_A 3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DG--NLLLNDISTN 79 (127)
T ss_dssp EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECT-TS--CEEEEECCSS
T ss_pred ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECC-CC--cEEEEECCcC
Confidence 579999999999999999887 99999999999999997 5999999998742 22 2799999999
Q ss_pred ceEEcCeeecCCCeeEccCCCEEEEeecC---CeEEEEEec
Q 000978 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLG---NHAYIFQQL 228 (1203)
Q Consensus 191 Gt~VNg~~~~k~~~~~L~~gDeI~f~~~~---~~~yif~~l 228 (1203)
||||||+++.++..+.|++||+|.|+... ...|+|+.-
T Consensus 80 GT~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~~ 120 (127)
T 1g6g_A 80 GTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 120 (127)
T ss_dssp CCEETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEEC
T ss_pred CeEECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEeC
Confidence 99999999999999999999999999754 346888754
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=5.6e-14 Score=148.06 Aligned_cols=184 Identities=23% Similarity=0.282 Sum_probs=131.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
..++++.|.+...+.|...+.. .+.+..+||+||+|+|||++|+++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3578899999999999887752 1223579999999999999999999988432
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++... ......+..++..+. ...+.||+|||+|.+. ....+.|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHH
Confidence 22222211 112233445554432 2347899999999872 123344444
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. ..++.+|++|+.+..+++.+.+|+ ..+.+++++.++..++++.++...+.. .+..+..|++.+.| .++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44432 356888889998889999999997 689999999999999999998776544 45567889999987 677
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
.+.++++.|.
T Consensus 223 ~~~~~~~~~~ 232 (250)
T 1njg_A 223 DALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877664
No 66
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=148.17 Aligned_cols=87 Identities=18% Similarity=0.317 Sum_probs=72.5
Q ss_pred ceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEe-------cCCceEEEEEEe-cCCceEEcCeeecCCCeeEccC
Q 000978 139 NVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRS 209 (1203)
Q Consensus 139 ~l~i~~-~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~-------~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~ 209 (1203)
.+.|.. +.|+|||+..|||+|.+..||..||.|..-. ......+||+|+ |+|||||||++|.+++.+.|++
T Consensus 34 ~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~ 113 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHV 113 (130)
T ss_dssp EEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCTTCCEECCT
T ss_pred eEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCCCceeECCC
Confidence 566654 6799999999999999999999999996411 112234799999 6799999999999999999999
Q ss_pred CCEEEEeecCCeEEEEE
Q 000978 210 GDEVVFGSLGNHAYIFQ 226 (1203)
Q Consensus 210 gDeI~f~~~~~~~yif~ 226 (1203)
||+|.|+...+ .|||+
T Consensus 114 GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 114 GHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TCEEEETTCSE-EEEEE
T ss_pred CCEEEECCceE-EEEEc
Confidence 99999998776 79986
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=6.1e-15 Score=164.58 Aligned_cols=208 Identities=17% Similarity=0.250 Sum_probs=141.2
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 975 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~--- 975 (1203)
++.|.+.+++.+...+..... .-....+|...+||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~-----~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARA-----GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH-----TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhc-----CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 456888888888777753110 001123455689999999999999999999998 677999999876332
Q ss_pred --cccccHHHH-----HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc-------CCcc
Q 000978 976 --WFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTER 1041 (1203)
Q Consensus 976 --~~G~~e~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~-------~~~~ 1041 (1203)
++|....++ ..+.......+.+||||||||.+- ..+.+.|+..++..... +-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 222211100 123333444556899999999882 22334444444332211 1247
Q ss_pred EEEEEecCC--------------------------CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-------C
Q 000978 1042 ILVLAATNR--------------------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------D 1088 (1203)
Q Consensus 1042 VlVIaTTN~--------------------------p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~-------~ 1088 (1203)
+++|+|||. ...+++++++||+..+.+.+|+.+++..|++.++... .
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 889999998 4468889999999999999999999999999987652 1
Q ss_pred C---CCchhHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHH
Q 000978 1089 L---SPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEIL 1126 (1203)
Q Consensus 1089 l---~~d~dl~~LA~~T~--G~Sg~DL~~L~~~Aa~~airel~ 1126 (1203)
. ..+..++.|+...- .+..++|+++++.+...++.+.+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 1 13445677777654 56789999999998887665543
No 68
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.58 E-value=2.4e-15 Score=176.11 Aligned_cols=109 Identities=20% Similarity=0.357 Sum_probs=99.2
Q ss_pred CCCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCCC---------ccceEEEEEEe-cCCceEEEEEEecCCce
Q 000978 123 TSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAI---------SAVLCKIKHVQ-SEGSAVAMVESIGSKGL 192 (1203)
Q Consensus 123 ~~~pWgrL~s~~~~~~~l~i~~~~~tvGr~~~cd~~l~~~~~---------s~~~c~i~~~~-~~~~~~~~led~s~nGt 192 (1203)
...|||+|++....++++++..+.|+|||+..||++|.++.+ |..||+|.+.. ..+..++||+|.|+|||
T Consensus 6 ~~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt 85 (419)
T 3i6u_A 6 TPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT 85 (419)
T ss_dssp CCCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE
T ss_pred cCCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc
Confidence 346899999999999999999999999999999999999876 99999998753 44555799999999999
Q ss_pred EEcCeeecCCCeeEccCCCEEEEeecCCeEEEEEecchh
Q 000978 193 QVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLNE 231 (1203)
Q Consensus 193 ~VNg~~~~k~~~~~L~~gDeI~f~~~~~~~yif~~l~~~ 231 (1203)
||||++++++.+..|++||+|.|+.+.+++|+|.++...
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~ 124 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 124 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSS
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEeccccc
Confidence 999999999999999999999999999999999987543
No 69
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=8.2e-14 Score=157.41 Aligned_cols=196 Identities=19% Similarity=0.238 Sum_probs=132.7
Q ss_pred Cccccccc-c--cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 897 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 897 ~vt~~dI~-G--le~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
..+|+++. | .......++..+..+ .....++||+||||||||+||+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45788876 3 444455555555431 1123579999999999999999999999 8999999998
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 971 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 971 eL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
++...+.+.........|..... .+.|||||||+.+.+.+ ..+..+..+++.+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 77554443332222223333332 47899999999884321 11222222333221 1234577777776
Q ss_pred CC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000978 1051 PF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1203)
Q Consensus 1051 p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~ 1120 (1203)
+. .+++++++||. .++.+++ +.+++.+|++..+...++. ++..++.|+..+ | ..+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68999999996 5788999 9999999999998876554 455678899998 5 567788877766654
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=2.7e-14 Score=161.67 Aligned_cols=164 Identities=21% Similarity=0.197 Sum_probs=107.9
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-cc-cccc
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-IT-SKWF 977 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se-L~-s~~~ 977 (1203)
+.++.|.+.+++.+...+.. ..++||+||||||||+||+++|+.++.+++.+++.. +. ....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 34678888888887766542 147999999999999999999999999999998742 10 1111
Q ss_pred cccHH-HHHHHHHHHHhcC---CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC-
Q 000978 978 GEGEK-YVKAVFSLASKIA---PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF- 1052 (1203)
Q Consensus 978 G~~e~-~I~~lF~~A~k~~---PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~- 1052 (1203)
|.... .....| ..... .+|||||||+.+ ....+..+..++++....+.+.....+.+++||+|+|..+
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~-----~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRS-----PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccC-----CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 11000 000000 00111 279999999987 2222333333333322222332222345788999998543
Q ss_pred ----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000978 1053 ----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1053 ----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
.+++++++||...+.++.|+.+++.+|++..+..
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3899999999888999999999999999998765
No 71
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=3.2e-14 Score=168.85 Aligned_cols=208 Identities=23% Similarity=0.327 Sum_probs=143.2
Q ss_pred cccccccccHHHH---HHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 898 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk---~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+|++++|.+.+. ..|...+.. +. ..++||+||||||||++|++||+.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 4689999999998 677766652 21 1589999999999999999999999999999986432
Q ss_pred ccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec--
Q 000978 975 KWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1048 (1203)
Q Consensus 975 ~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT-- 1048 (1203)
....++.++..+.. ..+.||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc------CceEEEecCCC
Confidence 23445556655543 35789999999988311 12234444443 235566555
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC-------CC-CCchhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000978 1049 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DL-SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1203)
Q Consensus 1049 N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~-------~l-~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~ 1120 (1203)
|....+++++++||. ++.|..|+.+++..+++.++... .+ ..+..++.|++.+.| ..+++.++++.|+..
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 444689999999995 78899999999999999998762 11 134557788888776 455666666665542
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 000978 1121 PIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1121 airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
+.. .......|+.+|+.+++......
T Consensus 222 a~~------------------------~~~~~~~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 222 AEV------------------------DDSGKRVLKPELLTEIAGERSAR 247 (447)
T ss_dssp SCB------------------------CTTSCEECCHHHHHHHHTCCCCC
T ss_pred ccc------------------------ccCCCCccCHHHHHHHHhhhhhc
Confidence 110 00122468888888888765443
No 72
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.56 E-value=3.5e-14 Score=160.88 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=99.6
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 963 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~-------~------ 963 (1203)
..+|+++.|.+.+++.+...+.. ....++||+||||||||++|+++++.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46799999999987765444331 11246999999999999999999999862 2
Q ss_pred --------------------EEEEeccccccccccccHHHHHHHHHHH---------HhcCCceEEEccchhhccCCCCC
Q 000978 964 --------------------FINISMSSITSKWFGEGEKYVKAVFSLA---------SKIAPSVIFVDEVDSMLGRRENP 1014 (1203)
Q Consensus 964 --------------------fi~I~~seL~s~~~G~~e~~I~~lF~~A---------~k~~PsILfIDEID~L~~~r~~~ 1014 (1203)
++.+........++|... +...+..+ ....++|||||||+.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-----~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE-----D 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----H
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----H
Confidence 222111110111112100 01112111 11136899999999882 1
Q ss_pred chhHHHHHHHHHHHHhh--cCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCC-CHHHHHHHHHHHH
Q 000978 1015 GEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLP-DAPNRAKILQVIL 1084 (1203)
Q Consensus 1015 ~~~~al~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~P-d~eeR~eIL~~~l 1084 (1203)
..+..+..+++.-...+ .+.......+++||+|+|... .+++++++||+..+.++.| +.+++.+|++..+
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 12222222222100001 111111124799999999754 8999999999888999988 6778889987754
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.56 E-value=4.5e-15 Score=151.40 Aligned_cols=157 Identities=22% Similarity=0.380 Sum_probs=112.5
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.|+++.|.++..+.+.+.+.. ....++||+||||+|||++|+++++.+ +.+++.++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred cccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 577889999888888777642 223679999999999999999999987 78899999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
+..+. ..+.+.....+..++..+.+ ..+.||||||+|.+...+....... ...++..++ + ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEEE
Confidence 87765 34445556677777776544 4577999999999964432111111 112222222 1 2457788
Q ss_pred EecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHH
Q 000978 1046 AATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1203)
Q Consensus 1046 aTTN~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL 1080 (1203)
++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 8888765 78999999997 6899999999998876
No 74
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=6.7e-14 Score=160.40 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=132.7
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEec
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 969 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----------g~~fi~I~~ 969 (1203)
+++.|.+...+.+...+..... ...+.+++|+||||+|||++|+++++++ +.+++.++|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 6788999999888877753211 1234689999999999999999999988 899999997
Q ss_pred cccc-c----------cc-------cccc-HHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 970 SSIT-S----------KW-------FGEG-EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 970 seL~-s----------~~-------~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
.... . .+ .+.. ...+..++..+....+ ||||||+|.+..... ... ++..++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhcC
Confidence 6543 1 00 1111 2334555555544444 999999999853321 111 13333322
Q ss_pred hcCCcccCCccEEEEEecCCC---CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh--C-CCCCchhHHHHHHHcC-
Q 000978 1031 WDGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--E-DLSPDVDFDAIANMTD- 1103 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~--~-~l~~d~dl~~LA~~T~- 1103 (1203)
. .++.||++||.+ ..+++.+++||...+.|++|+.+++.+|++..+.. . ....+..++.+++.+.
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 568899999887 67899999999889999999999999999998864 1 1223455677888776
Q ss_pred --CCcHHHHHHHHHHHHH
Q 000978 1104 --GYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1104 --G~Sg~DL~~L~~~Aa~ 1119 (1203)
| ..+.+.++|+.|+.
T Consensus 234 ~~G-~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQ 250 (384)
T ss_dssp TCC-CHHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHH
Confidence 5 34455566666654
No 75
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.54 E-value=5.1e-14 Score=162.10 Aligned_cols=221 Identities=18% Similarity=0.273 Sum_probs=157.6
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 000978 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1203)
Q Consensus 377 ~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1203)
+.+.+.+++. .-.++|+++-.. +..+..|.+.+..+++++++.. .+....+.|||+||+| +++++||||||+
T Consensus 68 ~~i~~~i~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppG--tGKT~la~aia~ 139 (357)
T 3d8b_A 68 ELIMNEIMDH-GPPVNWEDIAGV--EFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPG--TGKTLIGKCIAS 139 (357)
T ss_dssp HHHHHHTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTT--SSHHHHHHHHHH
T ss_pred HHHHhhcccC-CCCCCHHHhCCh--HHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCC--CCHHHHHHHHHH
Confidence 3445555543 347899997655 9999999999998999888743 2446778999999999 999999999999
Q ss_pred HhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000978 457 YFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMET 536 (1203)
Q Consensus 457 ~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1203)
+++++++.++.+.+.+
T Consensus 140 ~~~~~~~~i~~~~l~~---------------------------------------------------------------- 155 (357)
T 3d8b_A 140 QSGATFFSISASSLTS---------------------------------------------------------------- 155 (357)
T ss_dssp HTTCEEEEEEGGGGCC----------------------------------------------------------------
T ss_pred HcCCeEEEEehHHhhc----------------------------------------------------------------
Confidence 9999988887644433
Q ss_pred cccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCC
Q 000978 537 DTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCE 616 (1203)
Q Consensus 537 ~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~ 616 (1203)
T Consensus 156 -------------------------------------------------------------------------------- 155 (357)
T 3d8b_A 156 -------------------------------------------------------------------------------- 155 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchh----hhHHHHHhc--
Q 000978 617 GGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSY----STFKSRLEK-- 686 (1203)
Q Consensus 617 ~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~----~~~~----~~lk~~L~~-- 686 (1203)
+|.++ ....++.+|+.+.. ..|.||||||||.+.... .+.. +.|-..|+.
T Consensus 156 ---------------~~~g~--~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 156 ---------------KWVGE--GEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp ---------------SSTTH--HHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred ---------------cccch--HHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 01111 23457778887776 789999999999987632 1222 222233332
Q ss_pred --CCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCC
Q 000978 687 --LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQ 764 (1203)
Q Consensus 687 --l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd 764 (1203)
...+|+|||+||.++. ++.+|.+||...+.|++|+
T Consensus 216 ~~~~~~v~vI~atn~~~~-------------------------------------------l~~~l~~Rf~~~i~i~~p~ 252 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQE-------------------------------------------IDEAARRRLVKRLYIPLPE 252 (357)
T ss_dssp --CCCCEEEEEEESCGGG-------------------------------------------BCHHHHTTCCEEEECCCCC
T ss_pred ccCCCCEEEEEecCChhh-------------------------------------------CCHHHHhhCceEEEeCCcC
Confidence 2468999999998753 3567788998899999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 765 DEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 765 ~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
.++|..+|+..+.... +.. .+......+..+.||+++||..+|..+..
T Consensus 253 ~~~r~~il~~~~~~~~--~~l-~~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQ--CCL-SEEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp HHHHHHHHHHHHHTSC--BCC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcC--CCc-cHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999997765421 111 11222334456679999999999886644
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=3.8e-14 Score=178.17 Aligned_cols=224 Identities=20% Similarity=0.294 Sum_probs=156.6
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.|++++|.+...+.+.+.+.. +...++||+||||||||++|+++|..+ +..++.++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 577899999988888776642 233689999999999999999999987 66788888
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
+..+. ..+.|..+..++.+|..+....++||||||++.+++......... .+.+.|...+ ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~---~~~~~L~~~l------~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLIKPLL------SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH---HHHHHHSSCS------SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH---HHHHHHHHHH------hCCCeEEEE
Confidence 87775 467788899999999999888889999999999987654322221 1222222222 235678888
Q ss_pred ecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----CCCC-CchhHHHHHHHcCC-----CcHHHHH
Q 000978 1047 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDG-----YSGSDLK 1111 (1203)
Q Consensus 1047 TTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~----~~l~-~d~dl~~LA~~T~G-----~Sg~DL~ 1111 (1203)
+|+.+ ..+++++.+||. .+.|+.|+.+++.+||+.++.. ..+. .+..+..++..+.+ +.+..+.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 88753 467889999997 7999999999999999987754 2322 34445666665544 4455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000978 1112 NLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1168 (1203)
Q Consensus 1112 ~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~v~ 1168 (1203)
.++.+|......+ + .......++.+|+.+++..+.
T Consensus 400 ~lld~a~~~~~~~-------------------~---~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLM-------------------P---VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHS-------------------S---SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcc-------------------c---ccccCCccCHHHHHHHHHHhc
Confidence 7777665432110 0 001224578888888887764
No 77
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.54 E-value=8e-14 Score=151.54 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=55.7
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
+++|+++-.+ ++.|..|.+.+.. +++++.. .++ ...++.|||+||+| +++++||||||++++.+++.++.+
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEechH
Confidence 5789998777 8899999887654 5555432 332 24567899999999 999999999999999998888764
Q ss_pred cc
Q 000978 469 SL 470 (1203)
Q Consensus 469 ~~ 470 (1203)
.+
T Consensus 74 ~~ 75 (262)
T 2qz4_A 74 EF 75 (262)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 78
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.53 E-value=2.6e-14 Score=170.54 Aligned_cols=181 Identities=22% Similarity=0.320 Sum_probs=129.0
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.+++++|.+...+.+...+.. +...++||+||||||||++|+++|+.+ +.+|+.++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 578899999999988877652 123589999999999999999999997 78899998
Q ss_pred ccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec
Q 000978 969 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048 (1203)
Q Consensus 969 ~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT 1048 (1203)
+. ..+.|..+..++.+|..+....+.||||| + . ....+.|+..+. .+.+.+|++|
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---~-------~~a~~~L~~~L~------~g~v~vI~at 298 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A-------IDASNILKPSLA------RGELQCIGAT 298 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT------SSSCEEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---c-------hhHHHHHHHhhc------CCCEEEEecC
Confidence 87 56778778888999999998889999999 1 0 112223322222 3578999999
Q ss_pred CCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----CCCC-CchhHHHHHHHcCCCc-----HHHHHHH
Q 000978 1049 NRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYS-----GSDLKNL 1113 (1203)
Q Consensus 1049 N~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~----~~l~-~d~dl~~LA~~T~G~S-----g~DL~~L 1113 (1203)
|... .+++++++||. .|.|+.|+.+++.+||+.++.. .++. .+..+..++..+.+|. +.....+
T Consensus 299 ~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp CTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred CHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 9886 68999999996 5999999999999999988765 3332 4455677777665544 4466677
Q ss_pred HHHHHH
Q 000978 1114 CVTAAH 1119 (1203)
Q Consensus 1114 ~~~Aa~ 1119 (1203)
+..|..
T Consensus 378 l~~a~~ 383 (468)
T 3pxg_A 378 IDEAGS 383 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766664
No 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=4.3e-14 Score=163.26 Aligned_cols=222 Identities=20% Similarity=0.262 Sum_probs=133.6
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~----------------k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi 965 (1203)
.++|++.+++.|...+.....+..... ......+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467899999999887743332222100 0112345568999999999999999999999999999
Q ss_pred EEeccccc-ccccccc-HHHHHHHHHHH----HhcCCceEEEccchhhccCCCCCchh--HHHHHHHHHHHHhhcCCcc-
Q 000978 966 NISMSSIT-SKWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLRT- 1036 (1203)
Q Consensus 966 ~I~~seL~-s~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~--~al~~il~eLL~~ldgl~~- 1036 (1203)
.+++..+. ..++|.. +..+..++..+ ....++||||||||.+...+...... .....+.+.|+..+++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 44555555543 23467999999999996553221100 0001245566666664310
Q ss_pred ----------------cCCccEEEEEecCC-----------------------------------------CCCCcHHHH
Q 000978 1037 ----------------KDTERILVLAATNR-----------------------------------------PFDLDEAVI 1059 (1203)
Q Consensus 1037 ----------------~~~~~VlVIaTTN~-----------------------------------------p~~Ld~aLl 1059 (1203)
-...++++|+++|. ...+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01245677777762 113678899
Q ss_pred hcccccccCCCCCHHHHHHHHHH----HHh-------hCCC---CCchhHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH
Q 000978 1060 RRLPRRLMVNLPDAPNRAKILQV----ILA-------KEDL---SPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIK 1123 (1203)
Q Consensus 1060 rRFd~~I~v~~Pd~eeR~eIL~~----~l~-------~~~l---~~d~dl~~LA~~T~--G~Sg~DL~~L~~~Aa~~air 1123 (1203)
+||+.++.|++++.++...|+.. ++. ..+. ..+..+..|++... ....+.|.+++..+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99998999999999999998862 221 1111 12334556665532 23566777777776665444
No 80
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=7.2e-14 Score=157.54 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=129.3
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 977 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~ 977 (1203)
.+|++++|.+++++.|++.+.. .+.+..+|++||||||||++|+++|++++.+++.++++...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 4789999999999999988862 23335688899999999999999999999999999987632
Q ss_pred cccHHHHHHHHHHHHhc-----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 978 GEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 978 G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
...++..+...... .+.||||||+|.+.+ ... .+.|+..++.. ..++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~-------~~~L~~~le~~----~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AES-------QRHLRSFMEAY----SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHH-------HHHHHHHHHHH----GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHH-------HHHHHHHHHhC----CCCcEEEEEeCCcc
Confidence 33444444433332 568999999998831 111 22233333221 24578888999999
Q ss_pred CCcHHHHhcccccccCCCCCHHHHHHHHHHHH-------hhCCCC-Cc-hhHHHHHHHcCCCcHHHHHHHHHHH
Q 000978 1053 DLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-------AKEDLS-PD-VDFDAIANMTDGYSGSDLKNLCVTA 1117 (1203)
Q Consensus 1053 ~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l-------~~~~l~-~d-~dl~~LA~~T~G~Sg~DL~~L~~~A 1117 (1203)
.+++++++|| .++.|+.|+.++|.+|++.++ ...++. .+ ..++.|+..+.|.... +.++++.+
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~ 219 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSY 219 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHH
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence 9999999999 579999999999877655543 333433 34 5678888888875554 33444443
No 81
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.51 E-value=3.1e-13 Score=147.56 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=57.1
Q ss_pred CCccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 000978 385 DGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1203)
Q Consensus 385 ~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1203)
+.+...++|+++-.+ +..|..|.+.+-. +++++.. +++ ...++.|||+||+| +++++||||||+..+++++
T Consensus 3 ~~~~~~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~~---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 3 TEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQKLG---GKIPKGVLMVGPPG--TGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp EECSSCCCGGGSCSC--HHHHHHTHHHHHH-HHCGGGC--------CCCCEEEEECCTT--SCHHHHHHHHHHHHTCCEE
T ss_pred CccCCCCCHHHhcCc--HHHHHHHHHHHHH-HhCHHHHHHcC---CCCCCeEEEECcCC--CCHHHHHHHHHHHcCCCEE
Confidence 445678899998887 9999988876643 6665432 222 23456799999999 9999999999999998887
Q ss_pred Eeecc
Q 000978 464 IFDSH 468 (1203)
Q Consensus 464 ~~d~~ 468 (1203)
.++..
T Consensus 75 ~i~~~ 79 (257)
T 1lv7_A 75 TISGS 79 (257)
T ss_dssp EECSC
T ss_pred EEeHH
Confidence 77653
No 82
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.51 E-value=1.7e-13 Score=151.43 Aligned_cols=236 Identities=18% Similarity=0.233 Sum_probs=161.5
Q ss_pred cccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 388 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 388 ~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
.-.++|+++..+ +..+..|.+.+..++++++..+... ...++.|||+||+| +++++||||||++++.+++.++.
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--IEPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--CCCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeh
Confidence 346889998887 9999999999999999887653211 24567899999999 99999999999999999888876
Q ss_pred ccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 000978 468 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 547 (1203)
Q Consensus 468 ~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 547 (1203)
+.+.+.
T Consensus 85 ~~~~~~-------------------------------------------------------------------------- 90 (285)
T 3h4m_A 85 SELVKK-------------------------------------------------------------------------- 90 (285)
T ss_dssp GGGCCC--------------------------------------------------------------------------
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 444330
Q ss_pred ccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCccccccccc
Q 000978 548 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 627 (1203)
Q Consensus 548 ~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 627 (1203)
T Consensus 91 -------------------------------------------------------------------------------- 90 (285)
T 3h4m_A 91 -------------------------------------------------------------------------------- 90 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHh-----cCCCcEEEE
Q 000978 628 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLE-----KLPDKVIVI 694 (1203)
Q Consensus 628 ~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~~~~~lk~~L~-----~l~g~V~vI 694 (1203)
|.++ ....+..+|+.+.. ..|.||||||+|.+.... .+....|...|. ...++++||
T Consensus 91 -----~~~~--~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 91 -----FIGE--GASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp -----STTH--HHHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred -----ccch--HHHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 0111 23356777777777 789999999999987522 222333433343 234689999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHH
Q 000978 695 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 774 (1203)
Q Consensus 695 Gst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~ 774 (1203)
|++|.++..+++ ++|+| ||+..+.|++|+.++|.+||+.
T Consensus 161 ~ttn~~~~l~~~-------l~~~~----------------------------------Rf~~~i~~~~p~~~~r~~il~~ 199 (285)
T 3h4m_A 161 GATNRPDILDPA-------ILRPG----------------------------------RFDRIIEVPAPDEKGRLEILKI 199 (285)
T ss_dssp EECSCGGGBCHH-------HHSTT----------------------------------SEEEEEECCCCCHHHHHHHHHH
T ss_pred EeCCCchhcCHH-------HcCCC----------------------------------cCCeEEEECCCCHHHHHHHHHH
Confidence 999987643333 22333 5888999999999999999997
Q ss_pred hhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccccccccchhhhh
Q 000978 775 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQY 854 (1203)
Q Consensus 775 ~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~kl~ls~~~l~~ 854 (1203)
.+.. .....+.+....+..+.|+.+.||..+|. .|...++.. ....|+.+++..
T Consensus 200 ~~~~----~~~~~~~~~~~l~~~~~g~~~~~i~~l~~---------------~a~~~a~~~-------~~~~I~~~d~~~ 253 (285)
T 3h4m_A 200 HTRK----MNLAEDVNLEEIAKMTEGCVGAELKAICT---------------EAGMNAIRE-------LRDYVTMDDFRK 253 (285)
T ss_dssp HHTT----SCBCTTCCHHHHHHHCTTCCHHHHHHHHH---------------HHHHHHHHT-------TCSSBCHHHHHH
T ss_pred HHhc----CCCCCcCCHHHHHHHcCCCCHHHHHHHHH---------------HHHHHHHHh-------ccCcCCHHHHHH
Confidence 7643 22333444444555566777777766554 333333332 123577788887
Q ss_pred hhhHHH
Q 000978 855 GIGIFQ 860 (1203)
Q Consensus 855 al~~lq 860 (1203)
++..+.
T Consensus 254 al~~~~ 259 (285)
T 3h4m_A 254 AVEKIM 259 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 83
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.51 E-value=1.3e-13 Score=164.66 Aligned_cols=215 Identities=16% Similarity=0.217 Sum_probs=149.4
Q ss_pred cccCCc-cccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhC
Q 000978 382 GILDGT-NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1203)
Q Consensus 382 ~v~~~~-~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1203)
.++..+ ...++|+++-.. +..|..|.+.+.. +++++.. .++ ...++.|||+||+| +++++||||+|++.+
T Consensus 3 ~~~~~~~~~~~~f~di~G~--~~~~~~l~e~v~~-l~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~Laraia~~~~ 74 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGA--EEAIEELKEVVEF-LKDPSKFNRIG---ARMPKGILLVGPPG--TGKTLLARAVAGEAN 74 (476)
T ss_dssp --CCCCCSCCCCGGGCCSC--HHHHHHHHHHHHH-HHCTHHHHTTT---CCCCSEEEEECCTT--SSHHHHHHHHHHHHT
T ss_pred ceeccCCCCCCCHHHhCCc--HHHHHHHHHHHHH-hhChHHHhhcC---CCCCCeEEEECCCC--CCHHHHHHHHHHHcC
Confidence 345555 788999998777 8899999887653 6655432 222 23456799999999 999999999999999
Q ss_pred CeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 000978 460 AKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTT 539 (1203)
Q Consensus 460 a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1203)
++++.++.+.|...
T Consensus 75 ~~f~~is~~~~~~~------------------------------------------------------------------ 88 (476)
T 2ce7_A 75 VPFFHISGSDFVEL------------------------------------------------------------------ 88 (476)
T ss_dssp CCEEEEEGGGTTTC------------------------------------------------------------------
T ss_pred CCeeeCCHHHHHHH------------------------------------------------------------------
Confidence 99887765333210
Q ss_pred ccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCc
Q 000978 540 LTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGH 619 (1203)
Q Consensus 540 ~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~ 619 (1203)
|
T Consensus 89 -------------------~------------------------------------------------------------ 89 (476)
T 2ce7_A 89 -------------------F------------------------------------------------------------ 89 (476)
T ss_dssp -------------------C------------------------------------------------------------
T ss_pred -------------------H------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cc---hhhhHHHHHhcC-
Q 000978 620 GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SD---SYSTFKSRLEKL- 687 (1203)
Q Consensus 620 ~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~--------~~---~~~~lk~~L~~l- 687 (1203)
++. ....++.+|+.+.. ..|.||||||||.+...+ .+ ..+.|-..|+.+
T Consensus 90 --------------~g~--~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 90 --------------VGV--GAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp --------------TTH--HHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred --------------hcc--cHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 000 11236677888777 789999999999975421 11 222222223322
Q ss_pred -CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHH
Q 000978 688 -PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDE 766 (1203)
Q Consensus 688 -~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E 766 (1203)
..+|+||++||+++..|++ |+|||| |+..|.|++|+.+
T Consensus 151 ~~~~viVIaaTn~~~~Ld~a-------llR~gR----------------------------------Fd~~i~i~~Pd~~ 189 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPA-------LLRPGR----------------------------------FDKKIVVDPPDML 189 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGG-------GGSTTS----------------------------------SCEEEECCCCCHH
T ss_pred CCCCEEEEEecCChhhhchh-------hcccCc----------------------------------ceeEeecCCCCHH
Confidence 3589999999999877776 677777 8789999999999
Q ss_pred HHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccc
Q 000978 767 ALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 813 (1203)
Q Consensus 767 ~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d 813 (1203)
+|.+||+.++.+ .....+++....+-.+.|+.|+||..+|..+
T Consensus 190 ~R~~Il~~~~~~----~~l~~~v~l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 190 GRKKILEIHTRN----KPLAEDVNLEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp HHHHHHHHHHTT----SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcchhhHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999987754 2233444444456677888888887776543
No 84
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=4.3e-13 Score=152.67 Aligned_cols=202 Identities=17% Similarity=0.210 Sum_probs=135.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEeccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSS 971 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL------g~~fi~I~~se 971 (1203)
...+++.|.+...+.|.+.+...+. ...+..++|+||+|+|||+|++++++.+ +.+++.+++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3447889999998888876643111 1234679999999999999999999998 88999999754
Q ss_pred ccc------c----------cccc-cHHHHHHHHHHHHhcC-CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcC
Q 000978 972 ITS------K----------WFGE-GEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1033 (1203)
Q Consensus 972 L~s------~----------~~G~-~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldg 1033 (1203)
... . ..+. .......++....... |.||+|||++.+...... .++..++..++.
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~ 158 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSE 158 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhh
Confidence 211 0 0111 2233455555554443 889999999998643211 233444444443
Q ss_pred CcccCCccEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCchhHHHHHHHcC---
Q 000978 1034 LRTKDTERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTD--- 1103 (1203)
Q Consensus 1034 l~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~~I~v~~Pd~eeR~eIL~~~l~~~---~l~~d~dl~~LA~~T~--- 1103 (1203)
. ...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..+|++..+... ....+..+..++..+.
T Consensus 159 ~---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3 23578888888876 467888999986 489999999999999999887642 1223445677777776
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 000978 1104 GYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1104 G~Sg~DL~~L~~~Aa~~a 1121 (1203)
|. ++.+.++|..|+..+
T Consensus 236 G~-~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 236 GD-ARRALDLLRVSGEIA 252 (386)
T ss_dssp CC-HHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHH
Confidence 64 445556777776543
No 85
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.50 E-value=3.2e-13 Score=150.29 Aligned_cols=222 Identities=18% Similarity=0.267 Sum_probs=156.7
Q ss_pred HHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHH
Q 000978 376 REDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALA 455 (1203)
Q Consensus 376 ~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA 455 (1203)
.+.+.+.++. +.-.++|+++-.+ +..+..|.+.+..++.++++.. .+...++.|||+||+| +++++||||||
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~G--tGKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPG--NGKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSS--SCHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCC--CCHHHHHHHHH
Confidence 3455566664 3467899998776 9999999999999998888743 3456688999999999 99999999999
Q ss_pred hHhCCeEEEeecccccCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000978 456 HYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKME 535 (1203)
Q Consensus 456 ~~~~a~ll~~d~~~~~g~~~~~~~e~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1203)
++++++++.++.+.+.+.
T Consensus 76 ~~~~~~~~~i~~~~l~~~-------------------------------------------------------------- 93 (297)
T 3b9p_A 76 TECSATFLNISAASLTSK-------------------------------------------------------------- 93 (297)
T ss_dssp HHTTCEEEEEESTTTSSS--------------------------------------------------------------
T ss_pred HHhCCCeEEeeHHHHhhc--------------------------------------------------------------
Confidence 999988887765333320
Q ss_pred ccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCC
Q 000978 536 TDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQC 615 (1203)
Q Consensus 536 ~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c 615 (1203)
T Consensus 94 -------------------------------------------------------------------------------- 93 (297)
T 3b9p_A 94 -------------------------------------------------------------------------------- 93 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc----chhh----hHHHHHhcC
Q 000978 616 EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS----DSYS----TFKSRLEKL 687 (1203)
Q Consensus 616 ~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~----~~~~----~lk~~L~~l 687 (1203)
|+++ ....++.+|..+.. ..|.||||||+|.++.... +... .|-..|+..
T Consensus 94 -----------------~~~~--~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 151 (297)
T 3b9p_A 94 -----------------YVGD--GEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGL 151 (297)
T ss_dssp -----------------SCSC--HHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHC
T ss_pred -----------------ccch--HHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcc
Confidence 0011 22356777777776 8899999999999876321 2222 233333433
Q ss_pred C-----CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeC
Q 000978 688 P-----DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHM 762 (1203)
Q Consensus 688 ~-----g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~l 762 (1203)
+ ++|+|||+||+++. ++.++.+||...+.+++
T Consensus 152 ~~~~~~~~v~vi~~tn~~~~-------------------------------------------l~~~l~~R~~~~i~~~~ 188 (297)
T 3b9p_A 152 PGNPDGDRIVVLAATNRPQE-------------------------------------------LDEAALRRFTKRVYVSL 188 (297)
T ss_dssp C------CEEEEEEESCGGG-------------------------------------------BCHHHHHHCCEEEECCC
T ss_pred cccCCCCcEEEEeecCChhh-------------------------------------------CCHHHHhhCCeEEEeCC
Confidence 3 46999999998753 35667789999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 763 PQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 763 Pd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
|+.++|..+|+..+.... .... +......+..+.|+.+.||..+|..+..
T Consensus 189 p~~~~r~~il~~~~~~~~--~~~~-~~~~~~la~~~~g~~~~~l~~l~~~a~~ 238 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQG--SPLD-TEALRRLAKITDGYSGSDLTALAKDAAL 238 (297)
T ss_dssp CCHHHHHHHHHHHHGGGS--CCSC-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhcC--CCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999997765421 1111 1122223445678899898888775544
No 86
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=1.3e-12 Score=149.55 Aligned_cols=199 Identities=15% Similarity=0.092 Sum_probs=136.2
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 973 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~--gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~ 973 (1203)
.+++.|.+...+.|...+..... + .++. .++|+||||+|||++++++++.+ +..++.++|....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 36789999998888887753111 1 1223 79999999999999999999998 6789999976542
Q ss_pred cc---------c-------ccc-cHHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc
Q 000978 974 SK---------W-------FGE-GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1203)
Q Consensus 974 s~---------~-------~G~-~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~ 1035 (1203)
.. . .+. .......+...... ..|.||+|||++.+ . ...+..|+..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCC
Confidence 10 0 011 12223333333332 34789999999987 1 233444544444432
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhcccc-cccCCCCCHHHHHHHHHHHHhh---CCCCCchhHHHHHHHc------
Q 000978 1036 TKDTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAK---EDLSPDVDFDAIANMT------ 1102 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~-~I~v~~Pd~eeR~eIL~~~l~~---~~l~~d~dl~~LA~~T------ 1102 (1203)
.....++.||+++|.+ ..+++.+.+||.. .+.|++++.++..++++..+.. .....+..+..+++.+
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111478888999887 6788999999875 7999999999999999998865 2223456678888888
Q ss_pred ---CCCcHHHHHHHHHHHHHHH
Q 000978 1103 ---DGYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1103 ---~G~Sg~DL~~L~~~Aa~~a 1121 (1203)
.| ..+.+.++|+.|+..+
T Consensus 234 ~~~~G-~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 234 DTNRG-DARLAIDILYRSAYAA 254 (389)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHH
T ss_pred CCCCC-cHHHHHHHHHHHHHHH
Confidence 45 4567778888777654
No 87
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=7.5e-14 Score=168.40 Aligned_cols=195 Identities=20% Similarity=0.211 Sum_probs=125.2
Q ss_pred cccccccccHHHHHHHHHHHhCccCc-hhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQR-PELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~-~e~f~k~~~~--~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s 974 (1203)
.+|++++|.+.+++.|.+++...... +..|...+.. .+.+++||+||||||||++|+++|++++.+++.++++++..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 47899999999999999988642111 1122222111 24578999999999999999999999999999999988654
Q ss_pred ccccccH-------HHHHHHHHHH-----HhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccE
Q 000978 975 KWFGEGE-------KYVKAVFSLA-----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 1042 (1203)
Q Consensus 975 ~~~G~~e-------~~I~~lF~~A-----~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~V 1042 (1203)
....... ..+..+|..+ ....+.||||||+|.+.... +.. ++.|+..++. ...++
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~----l~~L~~~l~~----~~~~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGG----VGQLAQFCRK----TSTPL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTH----HHHHHHHHHH----CSSCE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHH----HHHHHHHHHh----cCCCE
Confidence 3211100 0011223222 22467899999999995432 111 2222222222 13445
Q ss_pred EEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcH
Q 000978 1043 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1107 (1203)
Q Consensus 1043 lVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg 1107 (1203)
++|+++.....+.+ +.+| ...+.|+.|+.+++.+++..++...++. .+..+..|++.+.|...
T Consensus 183 Ili~~~~~~~~l~~-l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR 246 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FDRV-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIR 246 (516)
T ss_dssp EEEESCTTSSTTGG-GTTT-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHH
T ss_pred EEEEcCCCCccchh-hHhc-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Confidence 65555444344543 4444 4689999999999999999888765543 34458889998877443
No 88
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=4e-13 Score=152.19 Aligned_cols=183 Identities=19% Similarity=0.235 Sum_probs=127.0
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEeccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMSS 971 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg------~~fi~I~~se 971 (1203)
.+|+++.|.+++++.|...+.. .++ .++||+||||+|||++|+++|+.++ ..++.+++++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKS-------------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-------------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCHHHhhCCHHHHHHHHHHHhc-------------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 4688999999999988887652 112 3599999999999999999999864 4688888776
Q ss_pred cccccccccHHHHHHHHHHHH----------------hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc
Q 000978 972 ITSKWFGEGEKYVKAVFSLAS----------------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1203)
Q Consensus 972 L~s~~~G~~e~~I~~lF~~A~----------------k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~ 1035 (1203)
..+ ...++..+.... ...+.||||||+|.+.. . ..+.|+..++..
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----~-------~~~~Ll~~le~~- 160 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----D-------AQSALRRTMETY- 160 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----H-------HHHHHHHHHHHT-
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----H-------HHHHHHHHHHhc-
Confidence 421 122222221111 12346999999998831 1 122333333322
Q ss_pred ccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHH
Q 000978 1036 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 1114 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~ 1114 (1203)
..+..+|.++|.+..+.+.+++|+. .+.+.+|+.++...+++..+...++. ++..+..|+..+.|.. +.+.+++
T Consensus 161 ---~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l 235 (353)
T 1sxj_D 161 ---SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL-RRGITLL 235 (353)
T ss_dssp ---TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCH-HHHHHHH
T ss_pred ---CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHHH
Confidence 2345667788989999999999995 88999999999999999988776653 4556788999998854 4444555
Q ss_pred HHHH
Q 000978 1115 VTAA 1118 (1203)
Q Consensus 1115 ~~Aa 1118 (1203)
+.++
T Consensus 236 ~~~~ 239 (353)
T 1sxj_D 236 QSAS 239 (353)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 5444
No 89
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.6e-13 Score=151.44 Aligned_cols=138 Identities=10% Similarity=0.101 Sum_probs=101.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccccc----------c------ccccHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITSK----------W------FGEGEKYVKAVF 988 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~~seL~s~----------~------~G~~e~~I~~lF 988 (1203)
++.++||+||||||||++++++++++ .+.++.++|..+.+. + .+.....+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 34789999999999999999999998 467899998765321 1 133456677778
Q ss_pred HHH--HhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc----HHHHhcc
Q 000978 989 SLA--SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD----EAVIRRL 1062 (1203)
Q Consensus 989 ~~A--~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld----~aLlrRF 1062 (1203)
... ....+.||+|||||.|. .+..+ ..|+... . ....+++||+++|..+..+ +++++||
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~-------~q~~L----~~l~~~~-~---~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL-------SEKIL----QYFEKWI-S---SKNSKLSIICVGGHNVTIREQINIMPSLKA 188 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC-------CTHHH----HHHHHHH-H---CSSCCEEEEEECCSSCCCHHHHHTCHHHHT
T ss_pred HHhhhccCCceEEEEecHHHhh-------cchHH----HHHHhcc-c---ccCCcEEEEEEecCcccchhhcchhhhccC
Confidence 764 34567899999999995 22333 3333211 1 2356899999999876544 3456788
Q ss_pred c-ccccCCCCCHHHHHHHHHHHHhhC
Q 000978 1063 P-RRLMVNLPDAPNRAKILQVILAKE 1087 (1203)
Q Consensus 1063 d-~~I~v~~Pd~eeR~eIL~~~l~~~ 1087 (1203)
. .+|.|++++.++..+|++..+...
T Consensus 189 ~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 6 689999999999999999998763
No 90
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=1.9e-12 Score=147.61 Aligned_cols=194 Identities=21% Similarity=0.249 Sum_probs=131.9
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 978 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G 978 (1203)
+++++.|.+.+++.+...+..... . ..++.+++|+||||+|||+||+++|++++.++...+...+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 688899998888887766542100 0 124467999999999999999999999999887766544321
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-----cc-------CCccEEEEE
Q 000978 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----TK-------DTERILVLA 1046 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-----~~-------~~~~VlVIa 1046 (1203)
...+..++.. .....|+||||++.+.. ...+ .+...+... +.. .. .-..+.+++
T Consensus 90 --~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e----~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 --QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEE----LLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp --HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHH----HHHHHHHTS-CCCC---------------CCCEEEE
T ss_pred --HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHH----HHHHHHHhc-ccceeeccCcccccccccCCCeEEEE
Confidence 1223333321 22468999999998841 1111 111111111 000 00 012467778
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1120 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~ 1120 (1203)
+|+.+..|++++++||...+.+++|+.+++.+|++......++. ++..+..||+++.|. ++.+.++++.+...
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDM 229 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999988766554 445578899999884 56777777766543
No 91
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.47 E-value=1.1e-13 Score=139.03 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=84.9
Q ss_pred ccCCCcchhhcccCCCCcceeee-CCeEEEcCCCCcceeecCCC----CccceEEEEEEecCCceEEEEEEe-cCCceEE
Q 000978 121 FETSTPWCRLLSQSGQNSNVPIC-ASIFTVGSSRQCNFPLKDQA----ISAVLCKIKHVQSEGSAVAMVESI-GSKGLQV 194 (1203)
Q Consensus 121 ~~~~~pWgrL~s~~~~~~~l~i~-~~~~tvGr~~~cd~~l~~~~----~s~~~c~i~~~~~~~~~~~~led~-s~nGt~V 194 (1203)
+....+|+ |....+....+.+. +..|+|||+..|||+|.+.. ||..||+|.... ++ .+||+|+ |+|||||
T Consensus 4 ~~~~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g--~~~l~Dl~S~NGT~v 79 (138)
T 2pie_A 4 MAGGRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EG--QWTIMDNKSLNGVWL 79 (138)
T ss_dssp GGGCEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TS--CEEEEECSCSSCEEE
T ss_pred CCCCccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CC--cEEEEECCCCCCeEE
Confidence 33456786 66666666788887 68899999999999999998 999999998743 22 3799999 8899999
Q ss_pred cCeeecCCCeeEccCCCEEEEeec----CCeEEEEEec
Q 000978 195 NGKNLKKNTSCELRSGDEVVFGSL----GNHAYIFQQL 228 (1203)
Q Consensus 195 Ng~~~~k~~~~~L~~gDeI~f~~~----~~~~yif~~l 228 (1203)
||++|.++..+.|++||+|.|+.+ ....|.|+..
T Consensus 80 Ng~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 80 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp TTEECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred CCEEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 999999999999999999999985 2235666544
No 92
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=1.3e-13 Score=175.87 Aligned_cols=197 Identities=22% Similarity=0.333 Sum_probs=129.9
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
++++++|.++....+...+.. +..+++||+||||||||++|+++|+.+ +.+++.++
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 577889999888887776642 223579999999999999999999998 88999999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 969 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 969 ~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
++.+. ..+.|..+..++.+|..+... .+.||||||++.+.+.....+..... .++..+ +. ...+.+|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-~~L~~~---l~------~~~i~~I 303 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-NMLKPA---LA------RGELRLI 303 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHH---HH------TTCCCEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-HHHHHH---Hh------CCCeEEE
Confidence 98886 467788888999999998875 68899999999997654332222222 122222 22 2457788
Q ss_pred EecCCCC----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhC----CCC-CchhHHHHHHHc-----CCCcHHHHH
Q 000978 1046 AATNRPF----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMT-----DGYSGSDLK 1111 (1203)
Q Consensus 1046 aTTN~p~----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~----~l~-~d~dl~~LA~~T-----~G~Sg~DL~ 1111 (1203)
++||.+. .+++++.+||. .|.|+.|+.+++.+||+.++... ++. .+..+..++..+ +.|.+....
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 8888653 57899999997 49999999999999999877532 222 344456666544 456677777
Q ss_pred HHHHHHHHH
Q 000978 1112 NLCVTAAHR 1120 (1203)
Q Consensus 1112 ~L~~~Aa~~ 1120 (1203)
.++.+|+..
T Consensus 383 ~lldea~a~ 391 (854)
T 1qvr_A 383 DLIDEAAAR 391 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776644
No 93
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.47 E-value=8.9e-14 Score=141.89 Aligned_cols=149 Identities=21% Similarity=0.409 Sum_probs=105.9
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
+|+++.|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 567888999888887776642 223589999999999999999999997 78888888
Q ss_pred cccccc--ccccccHHHHHHHHHHHHhc-CCceEEEccchhhccCCC-CCchhHHHHHHHHHHHHhhcCCcccCCccEEE
Q 000978 969 MSSITS--KWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1044 (1203)
Q Consensus 969 ~seL~s--~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~-~~~~~~al~~il~eLL~~ldgl~~~~~~~VlV 1044 (1203)
+..+.. .+.+.....+..++..+... .+.||||||+|.+.+.+. ....... ...+..+ ++ ..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~-~~~l~~~---~~------~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDA-GNILKPM---LA------RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCT-HHHHHHH---HH------TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHH-HHHHHHH---Hh------cCCeeE
Confidence 876642 24455566677777777665 678999999999975433 1111111 1222222 22 245788
Q ss_pred EEecCCCC-----CCcHHHHhcccccccCCCCC
Q 000978 1045 LAATNRPF-----DLDEAVIRRLPRRLMVNLPD 1072 (1203)
Q Consensus 1045 IaTTN~p~-----~Ld~aLlrRFd~~I~v~~Pd 1072 (1203)
|+++|.+. .+++++++||. .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 88888764 68999999997 48888885
No 94
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.46 E-value=1.9e-13 Score=141.33 Aligned_cols=106 Identities=22% Similarity=0.352 Sum_probs=86.5
Q ss_pred CCcchhhcccCCCCcceeeeCC-------------eEEEcCCCCcceeecCC-CCccceEEEEEEecCCceEEEEEEecC
Q 000978 124 STPWCRLLSQSGQNSNVPICAS-------------IFTVGSSRQCNFPLKDQ-AISAVLCKIKHVQSEGSAVAMVESIGS 189 (1203)
Q Consensus 124 ~~pWgrL~s~~~~~~~l~i~~~-------------~~tvGr~~~cd~~l~~~-~~s~~~c~i~~~~~~~~~~~~led~s~ 189 (1203)
...|++|.-.....+...+.-. .|+|||+..|||.|.+. .+|..||+|.... ++ .+||+|+|+
T Consensus 30 ~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~-~g--~~~l~DlS~ 106 (164)
T 1g3g_A 30 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DG--NLLLNDIST 106 (164)
T ss_dssp SSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECS-TT--CEEEEECCS
T ss_pred CCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECC-CC--CEEEEECCC
Confidence 4568999988766665555443 89999999999999997 5999999998742 23 279999999
Q ss_pred CceEEcCeeecCCCeeEccCCCEEEEeec---CCeEEEEEecchhh
Q 000978 190 KGLQVNGKNLKKNTSCELRSGDEVVFGSL---GNHAYIFQQLLNEV 232 (1203)
Q Consensus 190 nGt~VNg~~~~k~~~~~L~~gDeI~f~~~---~~~~yif~~l~~~~ 232 (1203)
|||||||++|.++..+.|++||+|.|+.. ....|+|..-...+
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~~~~ 152 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFINDKFK 152 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECHHHH
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCchhh
Confidence 99999999999999999999999999986 34578887654333
No 95
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.4e-12 Score=145.40 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=130.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL 972 (1203)
.+|+++.|.+.+.+.|...+.. .+. .++||+||+|+|||++|+++++.+ +.+++.+++++.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-------------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-------------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-------------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4688999999999999888753 122 249999999999999999999986 456888887653
Q ss_pred ccccccccHHHHHHHHHHHH-------hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEE
Q 000978 973 TSKWFGEGEKYVKAVFSLAS-------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1045 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~-------k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVI 1045 (1203)
.+ ...++.++.... ...+.||+|||+|.+.. ...+.|+..++.. ..++.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~----~~~~~~i 141 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELY----SNSTRFA 141 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHT----TTTEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhcc----CCCceEE
Confidence 21 233444444443 22378999999998831 1223333333322 3457788
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1046 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1046 aTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
++||.+..+.+.+.+|+. .+.|++|+.+++.++++..+...++. .+..+..|+..+.|... .+.++++.++
T Consensus 142 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r-~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMR-QAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred EEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 888988999999999985 89999999999999999988766544 45567888888887544 4444444443
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.45 E-value=4.1e-13 Score=156.06 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=69.4
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHh
Q 000978 377 EDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAH 456 (1203)
Q Consensus 377 ~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~ 456 (1203)
+.+.+.++.+ .-.++|+++-.. +..+..|.+.+..++.++++.. .+....+.|||+||+| +++++||+|+|+
T Consensus 99 ~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~la~aia~ 170 (389)
T 3vfd_A 99 NLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPG--NGKTMLAKAVAA 170 (389)
T ss_dssp TTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTT--SCHHHHHHHHHH
T ss_pred HHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCC--CCHHHHHHHHHH
Confidence 3344455543 457889998776 9999999999999998888753 3445678999999999 999999999999
Q ss_pred HhCCeEEEeecccccC
Q 000978 457 YFGAKLLIFDSHSLLG 472 (1203)
Q Consensus 457 ~~~a~ll~~d~~~~~g 472 (1203)
+++++++.++.+.+.+
T Consensus 171 ~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 171 ESNATFFNISAASLTS 186 (389)
T ss_dssp HTTCEEEEECSCCC--
T ss_pred hhcCcEEEeeHHHhhc
Confidence 9999998888755443
No 97
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.45 E-value=1.8e-13 Score=136.55 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=85.0
Q ss_pred CCccCCCcchhhcccCCCC---cceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEE
Q 000978 119 PTFETSTPWCRLLSQSGQN---SNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQV 194 (1203)
Q Consensus 119 ~~~~~~~pWgrL~s~~~~~---~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~V 194 (1203)
...+..+|||+|.-..... ..+.|....++|||+..|||+|.+..||..||+|.....++. ++|+|+ |+|||||
T Consensus 16 ~~~~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT~v 93 (132)
T 3va4_A 16 PRGSHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGTQI 93 (132)
T ss_dssp ----CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCEEE
T ss_pred CccccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCeEE
Confidence 4455668999999776444 578899999999999999999999999999999997643443 589999 6799999
Q ss_pred cCee--ecCCCeeEccCCCEEEEeecCCeEEEEEec
Q 000978 195 NGKN--LKKNTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1203)
Q Consensus 195 Ng~~--~~k~~~~~L~~gDeI~f~~~~~~~yif~~l 228 (1203)
||++ +.++..+.|+.||+|.|+.. .+.|..+
T Consensus 94 Ng~~i~l~~~~~~~L~~GD~I~lG~~---~l~f~~~ 126 (132)
T 3va4_A 94 VKPPRVLPPGVSHRLRDQELILFADF---PCQYHRL 126 (132)
T ss_dssp TTTTEEECTTCCEECCTTCEEEETTE---EEEEEEC
T ss_pred CCEEcccCCCCEEECCCCCEEEECCE---EEEEEEC
Confidence 9999 68889999999999999644 4556543
No 98
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.45 E-value=7.4e-13 Score=147.44 Aligned_cols=187 Identities=22% Similarity=0.239 Sum_probs=132.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL 972 (1203)
.+|+++.|.+.+++.|...+.. .+. .++||+||||+|||++|+++++.+ +.+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 5789999999999988776542 122 349999999999999999999987 456888888764
Q ss_pred ccccccccHHHHHHHHHHH-H-hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 973 TSKWFGEGEKYVKAVFSLA-S-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A-~-k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
.+ .......+..+.... . ...+.||+|||+|.+. ....+.|+..++.. ..++.+|++||.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~~----~~~~~~i~~~~~ 141 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEMY----SKSCRFILSCNY 141 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGGTSSS----SSSEEEEEEESC
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 32 112222222221100 0 1347899999999882 12344555555542 356888889999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
+..+.+.+.+|+. .+.|.+|+.+++.+++..++...++. .+..+..|+..+.|.. +.+.++++.++
T Consensus 142 ~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~~~ 208 (319)
T 2chq_A 142 VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF-RKAINALQGAA 208 (319)
T ss_dssp GGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH-HHHHHHHHHHH
T ss_pred hhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 9999999999995 89999999999999999998877654 4556788888887744 44445555444
No 99
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.44 E-value=1.9e-12 Score=147.78 Aligned_cols=184 Identities=23% Similarity=0.285 Sum_probs=131.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 963 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------- 963 (1203)
.+|++++|.+.+.+.|...+.. + +.+..+||+||+|+|||++|+++|+.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~----------~---~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH----------T---CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 3678999999999999887752 1 223569999999999999999999998542
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 964 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 964 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
++.++...- .....++.++..+.. ..+.||+|||+|.+. ....+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHHHHHHH
Confidence 333333210 111224555555442 246799999999882 123344455
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHH
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1108 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~ 1108 (1203)
.++.. ..++++|++|+.+..+.+.+++|+ ..+.+.+|+.++..++++.++...++. .+..+..|+..+.| ..+
T Consensus 142 ~le~~----~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHSC----CSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 45442 356788888888888999999998 789999999999999999998876654 34457889999987 566
Q ss_pred HHHHHHHHHH
Q 000978 1109 DLKNLCVTAA 1118 (1203)
Q Consensus 1109 DL~~L~~~Aa 1118 (1203)
++.++++.+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 100
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=3.2e-13 Score=169.95 Aligned_cols=182 Identities=21% Similarity=0.317 Sum_probs=129.1
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 968 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----------g~~fi~I~ 968 (1203)
.+++++|.+..++.+...+.. +...++||+||||||||++|+++|+.+ +.+++.++
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 577899999999988887652 223579999999999999999999997 78888888
Q ss_pred ccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEec
Q 000978 969 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1048 (1203)
Q Consensus 969 ~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTT 1048 (1203)
+ ...+.|+.+..++.+|..+....++||||| . . ....+.|+..+. ...+.+|++|
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~-------~~~~~~L~~~l~------~~~v~~I~at 298 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A-------IDASNILKPSLA------RGELQCIGAT 298 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCTT------SSSCEEEEEC
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c-------hhHHHHHHHHHh------cCCEEEEeCC
Confidence 7 456778888899999999999899999999 1 0 112223322222 4578999999
Q ss_pred CCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----CCCC-CchhHHHHHHHc-----CCCcHHHHHHH
Q 000978 1049 NRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMT-----DGYSGSDLKNL 1113 (1203)
Q Consensus 1049 N~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~----~~l~-~d~dl~~LA~~T-----~G~Sg~DL~~L 1113 (1203)
|... .+++++++|| ..|.|+.|+.+++.+||+.++.. .++. .+..+..++..+ +++.+.....+
T Consensus 299 ~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp CTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred ChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 9887 7999999999 56999999999999999987765 2222 344456666544 35566676677
Q ss_pred HHHHHHH
Q 000978 1114 CVTAAHR 1120 (1203)
Q Consensus 1114 ~~~Aa~~ 1120 (1203)
+..|+..
T Consensus 378 l~~a~~~ 384 (758)
T 3pxi_A 378 IDEAGSK 384 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 101
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.43 E-value=1.8e-13 Score=143.67 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=80.2
Q ss_pred cchhhcccCC--CCcceeeeCCe--EEEcCCCCcceeecCCCCccceEEEEEEec-CCc----------eEEEEEEecCC
Q 000978 126 PWCRLLSQSG--QNSNVPICASI--FTVGSSRQCNFPLKDQAISAVLCKIKHVQS-EGS----------AVAMVESIGSK 190 (1203)
Q Consensus 126 pWgrL~s~~~--~~~~l~i~~~~--~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~-~~~----------~~~~led~s~n 190 (1203)
.|..|.+... ....+.|.... |+|||+..|||+|.+..||..||+|..... .+. ..+||+|+|+|
T Consensus 28 ~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStN 107 (182)
T 1qu5_A 28 RFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTN 107 (182)
T ss_dssp CCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSS
T ss_pred cEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcC
Confidence 3444444432 23567787766 999999999999999999999999998641 111 46899999999
Q ss_pred ceEEcCeeecCCCeeEccCCCEEEEeec--CCeEEEEEe
Q 000978 191 GLQVNGKNLKKNTSCELRSGDEVVFGSL--GNHAYIFQQ 227 (1203)
Q Consensus 191 Gt~VNg~~~~k~~~~~L~~gDeI~f~~~--~~~~yif~~ 227 (1203)
||||||++|.++..+.|++||+|.|... |...+.|..
T Consensus 108 GT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 108 VSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp CCEETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CeEECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 9999999999999999999999999433 555566653
No 102
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=2.3e-12 Score=143.92 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=128.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-----~~fi~I~~seL 972 (1203)
.+|++++|.+.+++.|...+.. + +. .++||+||||+|||++|+++++.+. ..++.+++++.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 4688999999999999887752 1 12 3599999999999999999999873 35778887653
Q ss_pred ccccccccHHHHHHHHHHH--HhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 973 TSKWFGEGEKYVKAVFSLA--SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A--~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
.+. ......+....... ....+.||+|||+|.+. . ...+.|+..++.. ...+.+|+++|.
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~-------~~~~~L~~~le~~----~~~~~~i~~~~~ 149 (327)
T 1iqp_A 88 RGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----Q-------DAQQALRRTMEMF----SSNVRFILSCNY 149 (327)
T ss_dssp HHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----H-------HHHHHHHHHHHHT----TTTEEEEEEESC
T ss_pred Cch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----H-------HHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 221 11111111111000 01347899999999882 1 1223333333322 345778888999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1051 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1051 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
+..+.+.+.+|+. .+.|++|+.++...+++..+...++. ++..++.|+..+.| +.+.+.++++.++
T Consensus 150 ~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 150 SSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp GGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred ccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999995 78999999999999999988776653 45567888888877 4445556555554
No 103
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.39 E-value=5.8e-13 Score=136.88 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=74.1
Q ss_pred CcceeeeCCe--EEEcCCCCcceeecCCCCccceEEEEEEec-CCc----------eEEEEEEecCCceEEcCeeecCCC
Q 000978 137 NSNVPICASI--FTVGSSRQCNFPLKDQAISAVLCKIKHVQS-EGS----------AVAMVESIGSKGLQVNGKNLKKNT 203 (1203)
Q Consensus 137 ~~~l~i~~~~--~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~-~~~----------~~~~led~s~nGt~VNg~~~~k~~ 203 (1203)
...+.|.... |+|||+..||++|.+..||..||+|..... .+. ..+||+|+|+|||||||++|.++.
T Consensus 17 ~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ri~~~~ 96 (158)
T 1dmz_A 17 QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRMIQGT 96 (158)
T ss_dssp CCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCCEETTEECCSSE
T ss_pred ceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCeEECCEEcCCCc
Confidence 3567777766 999999999999999999999999998641 111 568999999999999999999999
Q ss_pred eeEccCCCEEEEeec--CCeEEEEE
Q 000978 204 SCELRSGDEVVFGSL--GNHAYIFQ 226 (1203)
Q Consensus 204 ~~~L~~gDeI~f~~~--~~~~yif~ 226 (1203)
.+.|++||+|.|... |...+.|+
T Consensus 97 ~~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 97 KFLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp EEECCSSCCEESCCCTTTTCCCCEE
T ss_pred eEEcCCCCEEEEeecCCCCEEEEEE
Confidence 999999999999322 33344554
No 104
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.38 E-value=7.7e-13 Score=129.33 Aligned_cols=97 Identities=27% Similarity=0.371 Sum_probs=77.3
Q ss_pred CcchhhcccCC--CCcceeeeC-CeEEEcCC-CCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeee
Q 000978 125 TPWCRLLSQSG--QNSNVPICA-SIFTVGSS-RQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNL 199 (1203)
Q Consensus 125 ~pWgrL~s~~~--~~~~l~i~~-~~~tvGr~-~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~ 199 (1203)
.||.+|.-... ....+.|.. ..|+|||+ ..|||+|.+..||..||+|.... + .+||+|+ |.|||||||+++
T Consensus 10 ~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~--~--~~~l~Dl~S~nGT~vng~~l 85 (118)
T 1uht_A 10 TPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--G--NWVIQDLGSSNGTLLNSNAL 85 (118)
T ss_dssp SCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS--S--SEEEECCCCSSCCEESSSBC
T ss_pred CCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC--C--EEEEEECCCCCCeEECCEEC
Confidence 45666665432 224666765 68999999 89999999999999999999642 2 2799999 789999999999
Q ss_pred cCCCeeEccCCCEEEEeecCCeEEEE
Q 000978 200 KKNTSCELRSGDEVVFGSLGNHAYIF 225 (1203)
Q Consensus 200 ~k~~~~~L~~gDeI~f~~~~~~~yif 225 (1203)
.++..+.|++||+|.|+......|.|
T Consensus 86 ~~~~~~~L~~gd~i~lG~~~~~~~~~ 111 (118)
T 1uht_A 86 DPETSVNLGDGDVIKLGEYTSILVNF 111 (118)
T ss_dssp CTTCEEECCTTEEEEETTTEEEEEEE
T ss_pred CCCCeEEcCCCCEEEECCeEEEEEEE
Confidence 99999999999999998664433333
No 105
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.38 E-value=1.3e-12 Score=156.79 Aligned_cols=122 Identities=16% Similarity=0.248 Sum_probs=84.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcC--------CcchhhhHHHHHhcC-----CCcEEEEeeeccCCCccccCCC
Q 000978 643 INTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSHP 709 (1203)
Q Consensus 643 i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~--------~~~~~~~lk~~L~~l-----~g~V~vIGst~~~d~~~~~~~~ 709 (1203)
+..+|+.+.. ..|.||||||||.+... +.+....+...|..+ ...++||+++|+++..|++
T Consensus 112 v~~lfq~a~~---~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a--- 185 (499)
T 2dhr_A 112 VRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA--- 185 (499)
T ss_dssp HHHHTTTSSS---SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT---
T ss_pred HHHHHHHHHh---cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc---
Confidence 4444544433 67999999999986542 122223344444333 2468999999999866666
Q ss_pred CCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCc
Q 000978 710 GGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNL 789 (1203)
Q Consensus 710 ~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~ 789 (1203)
|.|+|| |+..|.|.+|+.++|.+||+.++.. +....++
T Consensus 186 ----Llr~gR----------------------------------fdr~i~i~~Pd~~~R~~IL~~~~~~----~~l~~dv 223 (499)
T 2dhr_A 186 ----LLRPGR----------------------------------FDRQIAIDAPDVKGREQILRIHARG----KPLAEDV 223 (499)
T ss_dssp ----TSSTTS----------------------------------SCCEEECCCCCHHHHHHHHHHTTSS----SCCCCSS
T ss_pred ----cccccc----------------------------------cceEEecCCCCHHHHHHHHHHHHhc----CCCChHH
Confidence 666777 8889999999999999999977643 3344455
Q ss_pred hhHHHHhhccCCCcccccchhcc
Q 000978 790 NHLRTVLGRSGLECEGLETLCIR 812 (1203)
Q Consensus 790 ~~l~~vL~t~glsc~DL~~Lci~ 812 (1203)
+....+-.+.|+.|+||..+|..
T Consensus 224 ~l~~lA~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 224 DLALLAKRTPGFVGADLENLLNE 246 (499)
T ss_dssp TTHHHHTTSCSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 55555667778888888776653
No 106
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.37 E-value=8.1e-13 Score=131.73 Aligned_cols=87 Identities=22% Similarity=0.369 Sum_probs=71.0
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEec-CCceEEEEEEe------cCCceEEcCeeecCCCeeEccC
Q 000978 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQS-EGSAVAMVESI------GSKGLQVNGKNLKKNTSCELRS 209 (1203)
Q Consensus 137 ~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~-~~~~~~~led~------s~nGt~VNg~~~~k~~~~~L~~ 209 (1203)
...+.|....|+|||+..|||+|.+..||..||+|.+... +|...++|+|+ |+|||||||++|.+ +.|++
T Consensus 22 ~~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg~~i~~---~~L~~ 98 (131)
T 3hx1_A 22 RREVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKKVQE---HIIQT 98 (131)
T ss_dssp EEEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETTEEESE---EECCT
T ss_pred cEEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECCEEeEe---EECCC
Confidence 3478888899999999999999999999999999987632 33335799999 89999999999986 99999
Q ss_pred CCEEEEeecCCeEEEEEecc
Q 000978 210 GDEVVFGSLGNHAYIFQQLL 229 (1203)
Q Consensus 210 gDeI~f~~~~~~~yif~~l~ 229 (1203)
||+|.|+.. .++|.++.
T Consensus 99 GD~I~iG~~---~~~~~~~~ 115 (131)
T 3hx1_A 99 GDEIVMGPQ---VSVRYEYR 115 (131)
T ss_dssp TCEEECSTT---CEEEEEEE
T ss_pred CCEEEECCE---EEEEEEEe
Confidence 999999765 44555543
No 107
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.6e-12 Score=133.56 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=78.5
Q ss_pred CCcceeeeC-CeEEEcCCC---------------CcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCee
Q 000978 136 QNSNVPICA-SIFTVGSSR---------------QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKN 198 (1203)
Q Consensus 136 ~~~~l~i~~-~~~tvGr~~---------------~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~ 198 (1203)
....+.|.. +.|+|||.. .|||+|.+..||..||+|.....++...+||+|+ |+|||||||++
T Consensus 46 ~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~r 125 (158)
T 3els_A 46 PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV 125 (158)
T ss_dssp CSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEE
T ss_pred cceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEE
Confidence 344677775 689999994 5999999999999999999876666667899999 88999999999
Q ss_pred ecCCCeeEccCCCEEEEeecC---CeEEEEEe
Q 000978 199 LKKNTSCELRSGDEVVFGSLG---NHAYIFQQ 227 (1203)
Q Consensus 199 ~~k~~~~~L~~gDeI~f~~~~---~~~yif~~ 227 (1203)
|.++..+.|++||+|.|+.+. ..-|+|.+
T Consensus 126 i~~~~~~~L~~GD~I~~G~s~~~~~~elvF~~ 157 (158)
T 3els_A 126 IPGARYIELRSGDVLTLSEFEEDNDYELIFMN 157 (158)
T ss_dssp CCTTCCEECCTTEEEESSSCGGGCCEEEEEEE
T ss_pred cCCCceEEcCCCCEEEECCCCCCCCEEEEEEe
Confidence 999999999999999999654 45666654
No 108
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.36 E-value=2.6e-13 Score=148.74 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=56.8
Q ss_pred cCCccccccccccccccchhHHHHHHHHHhhccCCcccc-cccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeE
Q 000978 384 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 462 (1203)
Q Consensus 384 ~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~l 462 (1203)
++.+...++|+++-.+ +..+..|.+.+- .+++++.. +++ ...++.|||+||+| +++++||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHS---CCCCSCCCCBCSSC--SSHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCC---CCCCceEEEECCCC--CcHHHHHHHHHHHhCCCE
Confidence 4567778999998777 888888887654 36665542 222 23456799999999 999999999999998776
Q ss_pred EEeec
Q 000978 463 LIFDS 467 (1203)
Q Consensus 463 l~~d~ 467 (1203)
+.++.
T Consensus 73 ~~v~~ 77 (268)
T 2r62_A 73 FSMGG 77 (268)
T ss_dssp CCCCS
T ss_pred EEech
Confidence 55544
No 109
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.36 E-value=3.6e-12 Score=139.71 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=105.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 974 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~seL~s 974 (1203)
.+|++++|.......+.+.+.... ....+|||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 468888998888887776665311 1125799999999999999999999884 7899999987632
Q ss_pred c-----cccccHHHH-------HHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCC-------c
Q 000978 975 K-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------R 1035 (1203)
Q Consensus 975 ~-----~~G~~e~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl-------~ 1035 (1203)
. ++|...... ...+..+ ..++||||||+.+. .. +...|+..++.. .
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----~~-------~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----MM-------VQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----HH-------HHHHHHHHHHHCEECCCCC-
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----HH-------HHHHHHHHHHhCCeecCCCc
Confidence 2 222211100 0122222 35899999999882 11 222233333211 1
Q ss_pred ccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHH----HHHHHHHHhh----CCCC-----CchhH
Q 000978 1036 TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAK----EDLS-----PDVDF 1095 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR----~eIL~~~l~~----~~l~-----~d~dl 1095 (1203)
.....++.||+|||.. ..+.+.+.+||.. +.+..|...+| ..+++.++.. .+.. .+..+
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 1113467889999974 2578899999953 44555555444 4444444432 2221 22233
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1096 DAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1096 ~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
..|....-....++|.++++.+.
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~ 237 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSV 237 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHH
Confidence 44443332224556666666554
No 110
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=4.8e-12 Score=143.88 Aligned_cols=186 Identities=14% Similarity=0.194 Sum_probs=122.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 962 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~--------------- 962 (1203)
.+|+++.|.+.+.+.|+..+.. . .+.+ ++||+||+|+|||++++++|+++..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQ---------P---RDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTC---------T---TCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhh---------C---CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 4789999999999888776511 1 1222 3999999999999999999997511
Q ss_pred --------------cEEEEeccccccccccccHHHHHHHHHHHH--------------hcCCceEEEccchhhccCCCCC
Q 000978 963 --------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVIFVDEVDSMLGRRENP 1014 (1203)
Q Consensus 963 --------------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~--------------k~~PsILfIDEID~L~~~r~~~ 1014 (1203)
.++.++..... ......++..+..+. ...|.||+|||++.| +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~~ 148 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----TK 148 (354)
T ss_dssp --------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----CH
T ss_pred cccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----CH
Confidence 12222221110 001112444444332 225679999999986 21
Q ss_pred chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-C-c
Q 000978 1015 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-P-D 1092 (1203)
Q Consensus 1015 ~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~-d 1092 (1203)
. ..+.++..++.. ..++.+|.+|+.+..+.+.+++|+ ..+.|++|+.+++.++++..+...++. + +
T Consensus 149 ---~----~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (354)
T 1sxj_E 149 ---D----AQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETK 216 (354)
T ss_dssp ---H----HHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred ---H----HHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcH
Confidence 1 122333333322 235678888898899999999999 789999999999999999998877654 4 5
Q ss_pred hhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000978 1093 VDFDAIANMTDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1093 ~dl~~LA~~T~G~Sg~DL~~L~~~Aa 1118 (1203)
..+..|++.+.|.. +++.++++.++
T Consensus 217 ~~l~~i~~~~~G~~-r~a~~~l~~~~ 241 (354)
T 1sxj_E 217 DILKRIAQASNGNL-RVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 56788998888744 44545555444
No 111
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.35 E-value=1.1e-12 Score=132.86 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=75.3
Q ss_pred CCcchhhcccCCCCcceeee-CCeEEEcCCCCcceeecCCC----CccceEEEEEEecCCceEEEEEEe-cCCceEEcCe
Q 000978 124 STPWCRLLSQSGQNSNVPIC-ASIFTVGSSRQCNFPLKDQA----ISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGK 197 (1203)
Q Consensus 124 ~~pWgrL~s~~~~~~~l~i~-~~~~tvGr~~~cd~~l~~~~----~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~ 197 (1203)
...|+-+ ...+....+.+. +..|+|||+..||++|.+.. ||..||+|.... ++ .+||+|+ |+|||||||+
T Consensus 15 ~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g--~~~l~Dl~S~NGT~vNg~ 90 (145)
T 2csw_A 15 GRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EG--QWTIMDNKSLNGVWLNRA 90 (145)
T ss_dssp SEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TS--CEEEEBSSCSSCEEESSC
T ss_pred CccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CC--eEEEEECCCCCCeEECCE
Confidence 3568744 334445566674 47899999999999999998 999999998743 22 2799997 7799999999
Q ss_pred eecCCCeeEccCCCEEEEeec
Q 000978 198 NLKKNTSCELRSGDEVVFGSL 218 (1203)
Q Consensus 198 ~~~k~~~~~L~~gDeI~f~~~ 218 (1203)
+|.++..+.|++||+|.|+.+
T Consensus 91 ~i~~~~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 91 RLEPLRVYSIHQGDYIQLGVP 111 (145)
T ss_dssp BCCBTCCEECCSSCCEEESCC
T ss_pred ECCCCccEECCCCCEEEECCC
Confidence 999999999999999999985
No 112
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2.4e-13 Score=166.66 Aligned_cols=173 Identities=20% Similarity=0.272 Sum_probs=101.8
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----eccccccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 977 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I----~~seL~s~~~ 977 (1203)
.+.|++.+++.+...+..... ..... ...+...+|||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~--~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVP--KVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCC--EETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhCCCc--ccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 567889888776443332110 00000 1122334799999999999999999999987655442 2233322211
Q ss_pred cccH----HHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhc--CCcccCCccEEEEEecCCC
Q 000978 978 GEGE----KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDTERILVLAATNRP 1051 (1203)
Q Consensus 978 G~~e----~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ld--gl~~~~~~~VlVIaTTN~p 1051 (1203)
.... ......+..| ..+||||||||.+ ....+..+..++++-...+. +.....+.++.||||||++
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 1100 0001123333 3489999999987 33333333333322111111 2222334678999999987
Q ss_pred C-------------CCcHHHHhccccc-ccCCCCCHHHHHHHHHHHHhh
Q 000978 1052 F-------------DLDEAVIRRLPRR-LMVNLPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1052 ~-------------~Ld~aLlrRFd~~-I~v~~Pd~eeR~eIL~~~l~~ 1086 (1203)
. .|++++++||+.. +..+.|+.+ ...|++..+..
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 6 8999999999854 455677777 88888887764
No 113
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.31 E-value=4.3e-12 Score=120.43 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=69.0
Q ss_pred CCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEE
Q 000978 136 QNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1203)
Q Consensus 136 ~~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~ 214 (1203)
....+.|....++|||+..||+.|.+..+|..||+|... ++. ++|+|+ |+|||||||+++. .+.|++||+|.
T Consensus 14 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 14 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp SCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCCEETTEECS---EEECCTTCEEE
T ss_pred CCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCEEECCEECc---eEECCCCCEEE
Confidence 356788888899999999999999999999999999963 232 799999 6799999999997 68999999999
Q ss_pred EeecCCeEEEEE
Q 000978 215 FGSLGNHAYIFQ 226 (1203)
Q Consensus 215 f~~~~~~~yif~ 226 (1203)
|+.. .+.|+
T Consensus 87 iG~~---~~~~~ 95 (100)
T 3po8_A 87 LGHS---EIIVR 95 (100)
T ss_dssp ETTE---EEEEE
T ss_pred ECCE---EEEEE
Confidence 9753 44554
No 114
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.30 E-value=1.8e-12 Score=155.70 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=94.0
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-ccccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITSKWFG 978 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~se-L~s~~~G 978 (1203)
.+.|.+++++.+...+.. ..+|||+||||||||+||+++|+.++ .+|..+.+.- ..+..+|
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 456888888776655431 14799999999999999999999884 4566665532 1122222
Q ss_pred ccH--HH-HHHHHHHHHhc---CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC
Q 000978 979 EGE--KY-VKAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1052 (1203)
Q Consensus 979 ~~e--~~-I~~lF~~A~k~---~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1052 (1203)
... .. -...|..+.+. .++|||||||+.+ ++..+..+..++++....+.+.....+.++ +|+|||...
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~lp 160 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNELP 160 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSCC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccCC
Confidence 110 00 01222212111 4679999999866 222222222333222222233322223444 566667532
Q ss_pred ---CCcHHHHhcccccccCCCCCH-HHHHHHHHHHH
Q 000978 1053 ---DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVIL 1084 (1203)
Q Consensus 1053 ---~Ld~aLlrRFd~~I~v~~Pd~-eeR~eIL~~~l 1084 (1203)
.+.+++++||...+.++.|+. +++..|++...
T Consensus 161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 245799999988899999987 77888887654
No 115
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.30 E-value=2e-12 Score=128.14 Aligned_cols=95 Identities=20% Similarity=0.382 Sum_probs=79.3
Q ss_pred CcchhhcccC---CCCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeec
Q 000978 125 TPWCRLLSQS---GQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLK 200 (1203)
Q Consensus 125 ~pWgrL~s~~---~~~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~ 200 (1203)
.+|++|+-.. .....+.|....|+|||+..|||+|.+..||..||+|.... + .+||+|+ |.|||||||+++.
T Consensus 10 ~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~--~--~~~l~Dl~S~nGt~vNg~~i~ 85 (128)
T 1r21_A 10 WPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE--Q--EAILHNFSSTNPTQVNGSVID 85 (128)
T ss_dssp CCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS--S--CEEECCCCSSSCCEETTEECS
T ss_pred CCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC--C--EEEEEECCCCCCEEECCEECC
Confidence 6678887654 23457888889999999999999999999999999999742 2 3799999 5799999999998
Q ss_pred CCCeeEccCCCEEEEeecCCeEEEEEec
Q 000978 201 KNTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1203)
Q Consensus 201 k~~~~~L~~gDeI~f~~~~~~~yif~~l 228 (1203)
+ .+.|++||+|.|+ ...|.|...
T Consensus 86 ~--~~~L~~Gd~i~iG---~~~~~~~~~ 108 (128)
T 1r21_A 86 E--PVRLKHGDVITII---DRSFRYENE 108 (128)
T ss_dssp S--CEECCTTEEEECS---SCEEEEEEC
T ss_pred C--cEEcCCCCEEEEC---CEEEEEEeC
Confidence 4 7999999999997 356777765
No 116
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.30 E-value=5.9e-12 Score=141.18 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhh-ccCCCeEEEEcchhhhhcCCc----------chhhhHHHHHhc-------------CCCcEEEEeee
Q 000978 642 LINTLFEVVFSE-SRSCPFILFMKDAEKSIAGNS----------DSYSTFKSRLEK-------------LPDKVIVIGSH 697 (1203)
Q Consensus 642 ~i~~L~ev~~~~-~~~~p~Ilfiddi~~~l~~~~----------~~~~~lk~~L~~-------------l~g~V~vIGst 697 (1203)
.+..+|+.+... .+..|.||||||||++..... ...+.|-..|+. -..+|+||++|
T Consensus 83 ~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~tt 162 (293)
T 3t15_A 83 LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG 162 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEec
Confidence 355556555322 247899999999999776221 122444444431 13579999999
Q ss_pred ccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 698 THTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 698 ~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
|+.+..+++ |+|+|| |+..|. +|+.++|.+||+.++.
T Consensus 163 N~~~~ld~a-------l~R~~R----------------------------------~d~~i~--~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 163 NDFSTLYAP-------LIRDGR----------------------------------MEKFYW--APTREDRIGVCTGIFR 199 (293)
T ss_dssp SSCCC--CH-------HHHHHH----------------------------------EEEEEE--CCCHHHHHHHHHHHHG
T ss_pred CCcccCCHH-------HhCCCC----------------------------------CceeEe--CcCHHHHHHHHHHhcc
Confidence 999876666 555555 655554 7999999999996654
Q ss_pred hhhhhhhccCCchhHHHHhhccCCCcccccch
Q 000978 778 RDSETLKMKGNLNHLRTVLGRSGLECEGLETL 809 (1203)
Q Consensus 778 ~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~L 809 (1203)
. .++.....+..+.+|.+.+|..+
T Consensus 200 ~--------~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 200 T--------DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp G--------GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred C--------CCCCHHHHHHHhCCCCcccHHHH
Confidence 2 12333333444568899888643
No 117
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.28 E-value=1.1e-11 Score=120.77 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEE
Q 000978 136 QNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1203)
Q Consensus 136 ~~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~ 214 (1203)
....+.|....++|||+..|||+|.+..||..||+|... ++ .+||+|+ |+|||||||+++. .+.|++||+|.
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~--~~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GG--EFQVVDVGSLNGTYVNREPVD---SAVLANGDEVQ 94 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TT--EEEEEECSCSSCEEETTEECS---EEEECTTCEEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CC--EEEEEECCCCCCeEECCEEcc---eEECCCCCEEE
Confidence 445778888899999999999999999999999999975 23 3799999 7899999999997 68999999999
Q ss_pred EeecCCeEEEEEec
Q 000978 215 FGSLGNHAYIFQQL 228 (1203)
Q Consensus 215 f~~~~~~~yif~~l 228 (1203)
|+. ..|.|...
T Consensus 95 iG~---~~l~~~~~ 105 (115)
T 2xt9_B 95 IGK---FRLVFLTG 105 (115)
T ss_dssp ETT---EEEEEEC-
T ss_pred ECC---EEEEEEeC
Confidence 965 46667644
No 118
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.28 E-value=8.1e-12 Score=132.45 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=72.7
Q ss_pred CcceeeeC-CeEEEcCCC---------------CcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeee
Q 000978 137 NSNVPICA-SIFTVGSSR---------------QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNL 199 (1203)
Q Consensus 137 ~~~l~i~~-~~~tvGr~~---------------~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~ 199 (1203)
...+.|.. +.|+|||+. .|||+|.++.||..||.|.....++...+||+|+ |+|||||||++|
T Consensus 94 i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI 173 (205)
T 3elv_A 94 WKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI 173 (205)
T ss_dssp SEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEEC
T ss_pred ceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEEC
Confidence 34677854 899999984 4999999999999999998765556667899999 779999999999
Q ss_pred cCCCeeEccCCCEEEEeecC
Q 000978 200 KKNTSCELRSGDEVVFGSLG 219 (1203)
Q Consensus 200 ~k~~~~~L~~gDeI~f~~~~ 219 (1203)
.++..+.|++||+|.|+.+.
T Consensus 174 ~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 174 PGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp CBTSCEECCTTCEEESSSSG
T ss_pred CCCceeECCCCCEEEECCCC
Confidence 99999999999999999755
No 119
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.28 E-value=1.5e-11 Score=133.91 Aligned_cols=123 Identities=15% Similarity=0.240 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC--------CcchhhhHHHHHhcC-----CCcEEEEeeeccCCCccccCC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSH 708 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~--------~~~~~~~lk~~L~~l-----~g~V~vIGst~~~d~~~~~~~ 708 (1203)
.+..+|+.+.. ..|.|+||||||.+... +.+....+...|..+ ...++++++++.++..|++
T Consensus 96 ~i~~~~~~~~~---~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~-- 170 (254)
T 1ixz_A 96 RVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA-- 170 (254)
T ss_dssp HHHHHHHHHTT---SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGG--
T ss_pred HHHHHHHHHHh---cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHH--
Confidence 35666666654 67999999999987542 112222333333322 2358889999988765555
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCC
Q 000978 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1203)
Q Consensus 709 ~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N 788 (1203)
|+|+|| |+..|+|++|+.++|.+||+.++.. +....+
T Consensus 171 -----l~r~~r----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~----~~~~~~ 207 (254)
T 1ixz_A 171 -----LLRPGR----------------------------------FDRQIAIDAPDVKGREQILRIHARG----KPLAED 207 (254)
T ss_dssp -----GGSTTS----------------------------------SCEEEECCSCCHHHHHHHHHHHHTT----SCBCTT
T ss_pred -----HcCCCc----------------------------------CCeEEeeCCcCHHHHHHHHHHHHcC----CCCCcc
Confidence 555555 8889999999999999999866532 333444
Q ss_pred chhHHHHhhccCCCcccccchhcc
Q 000978 789 LNHLRTVLGRSGLECEGLETLCIR 812 (1203)
Q Consensus 789 ~~~l~~vL~t~glsc~DL~~Lci~ 812 (1203)
.+....+..+.|+.++||..+|..
T Consensus 208 ~~~~~la~~~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 208 VDLALLAKRTPGFVGADLENLLNE 231 (254)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHH
Confidence 445555667778888888777664
No 120
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.27 E-value=1.3e-11 Score=124.86 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=70.2
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEEE
Q 000978 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVF 215 (1203)
Q Consensus 137 ~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~f 215 (1203)
...+.|....++|||+..|||+|.+..||..||+|.+. ++ .++|+|+ |.|||||||++|. .+.|++||+|.|
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~--~~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EG--EFEVVDVGSLNGTYVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TT--EEEEEESCCSSCCEETTEECS---EEECCTTEEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CC--EEEEEECCCcCCeEECCEEcc---eEECCCCCEEEE
Confidence 44677778899999999999999999999999999983 33 3799999 6899999999998 689999999999
Q ss_pred eecCCeEEEEEec
Q 000978 216 GSLGNHAYIFQQL 228 (1203)
Q Consensus 216 ~~~~~~~yif~~l 228 (1203)
+. ..|.|..-
T Consensus 131 G~---~~l~f~~~ 140 (143)
T 2kb3_A 131 GK---FRLVFLAG 140 (143)
T ss_dssp TT---EEEEEEEC
T ss_pred CC---EEEEEEeC
Confidence 64 46677644
No 121
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.27 E-value=2.5e-11 Score=125.17 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=69.4
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEEE
Q 000978 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVF 215 (1203)
Q Consensus 137 ~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~f 215 (1203)
...+.|....++|||+..|||+|.+..||..||+|.+. ++ .+||+|+ |.|||||||++|. .+.|++||+|.|
T Consensus 67 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~--~~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 67 GSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NN--EFNVVDVGSLNGTYVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TT--EEEEECCCCSSCEEETTBCCS---EEECCSSCEEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CC--EEEEEECCCCCCeEECCEEcc---eEECCCCCEEEE
Confidence 45677778899999999999999999999999999984 33 3799999 6799999999997 589999999999
Q ss_pred eecCCeEEEEEe
Q 000978 216 GSLGNHAYIFQQ 227 (1203)
Q Consensus 216 ~~~~~~~yif~~ 227 (1203)
+. ..|.|..
T Consensus 140 G~---~~l~f~~ 148 (162)
T 2kfu_A 140 GK---FRLVFLT 148 (162)
T ss_dssp TT---EEEEEEC
T ss_pred CC---EEEEEEe
Confidence 65 4566663
No 122
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.27 E-value=2.1e-12 Score=130.13 Aligned_cols=86 Identities=16% Similarity=0.297 Sum_probs=72.7
Q ss_pred cceeeeCC-eEEEcCCCC-cceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEE
Q 000978 138 SNVPICAS-IFTVGSSRQ-CNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1203)
Q Consensus 138 ~~l~i~~~-~~tvGr~~~-cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~ 214 (1203)
..+.|... .|+|||+.. |||+|.+..||..||+|.....++ .+||+|+ |+|||||||++|.++..+.|++||+|.
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLK--RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSC--CEEEECCSCSSCEESSSCEECSSSCCEECTTCCBB
T ss_pred eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCC--cEEEEECCCCCCeEECCEECCCCccEECCCCCEEE
Confidence 36777774 599999998 999999999999999998764223 3699998 789999999999999999999999999
Q ss_pred EeecCCeEEEEE
Q 000978 215 FGSLGNHAYIFQ 226 (1203)
Q Consensus 215 f~~~~~~~yif~ 226 (1203)
|+.... .|+|.
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987654 35554
No 123
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.26 E-value=1.2e-11 Score=139.62 Aligned_cols=190 Identities=16% Similarity=0.228 Sum_probs=112.7
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 975 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~--- 975 (1203)
+++|.....+.+.+.+... .....+|||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 4566666666666665431 1123579999999999999999999976 689999999876331
Q ss_pred --cccccH----H---HHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc-------ccCC
Q 000978 976 --WFGEGE----K---YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDT 1039 (1203)
Q Consensus 976 --~~G~~e----~---~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~-------~~~~ 1039 (1203)
++|... . .....|..|. .++||||||+.+. . .+...|+..++... ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----~-------~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----P-------LMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----H-------HHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----H-------HHHHHHHHHHhcCEeeecCCccccc
Confidence 222210 0 1122444443 4899999999882 1 12223333333221 1123
Q ss_pred ccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHH----HHHHHHHHHhh----CCC----CCchhHHHHHH
Q 000978 1040 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPN----RAKILQVILAK----EDL----SPDVDFDAIAN 1100 (1203)
Q Consensus 1040 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~ee----R~eIL~~~l~~----~~l----~~d~dl~~LA~ 1100 (1203)
.++.||+|||.. ..+++.+..||. .+.+..|...+ ...+++.++.. .+. ..+..+..|..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 468899999975 246778888885 55555555444 44466655543 111 12333455555
Q ss_pred HcCCCcHHHHHHHHHHHHH
Q 000978 1101 MTDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1101 ~T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
..-.-..++|.++++.|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVV 233 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 5422255677777776654
No 124
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=1.3e-10 Score=132.23 Aligned_cols=172 Identities=22% Similarity=0.268 Sum_probs=118.5
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 972 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg-----~~fi~I~~seL 972 (1203)
.+|+++.|.+.+.+.|...+.. + +. .++||+||||+|||++|+++|+.+. ..++.++.++.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 4688999999999998887752 1 12 2499999999999999999999973 24666766542
Q ss_pred ccccccccHHHHHHHHHHHHh------cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEE
Q 000978 973 TSKWFGEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1046 (1203)
Q Consensus 973 ~s~~~G~~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIa 1046 (1203)
.+ ...++..+..... ..+.|++|||+|.+. ... .+.|+..++.. ...+.+|.
T Consensus 88 ~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~-------~~~L~~~le~~----~~~~~~il 145 (340)
T 1sxj_C 88 RG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAA-------QNALRRVIERY----TKNTRFCV 145 (340)
T ss_dssp CS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHH-------HHHHHHHHHHT----TTTEEEEE
T ss_pred cc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHH-------HHHHHHHHhcC----CCCeEEEE
Confidence 11 1233333322221 136899999999882 112 22333333322 24566777
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCC-CchhHHHHHHHcCCCc
Q 000978 1047 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1047 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~-~d~dl~~LA~~T~G~S 1106 (1203)
+||.+..+.+.+++|+. .+.|..++.++..+++...+...++. .+..+..++..+.|..
T Consensus 146 ~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~ 205 (340)
T 1sxj_C 146 LANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDM 205 (340)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCH
T ss_pred EecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 88999999999999994 78899999999999999888665543 3445677777776633
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=3.2e-10 Score=129.21 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=119.7
Q ss_pred cccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------------
Q 000978 904 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------------- 963 (1203)
Q Consensus 904 ~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~-------------------- 963 (1203)
..+++..+.|...+.. .+.+..+||+||+|+|||++|+++|+.+...
T Consensus 5 pw~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~ 71 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAG 71 (334)
T ss_dssp GGGHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 3456667777766642 2334679999999999999999999998532
Q ss_pred ----EEEEeccccccccccccHHHHHHHHHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCc
Q 000978 964 ----FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1035 (1203)
Q Consensus 964 ----fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~ 1035 (1203)
++.++..+- + .......++.+++.+... .+.|++|||+|.|- ....+.|+..++.
T Consensus 72 ~~~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe-- 134 (334)
T 1a5t_A 72 THPDYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE-- 134 (334)
T ss_dssp CCTTEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS--
T ss_pred CCCCEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC--
Confidence 344433210 0 011234566777666533 36799999999882 1234556666654
Q ss_pred ccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHH
Q 000978 1036 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCV 1115 (1203)
Q Consensus 1036 ~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~ 1115 (1203)
.+.++++|.+|+.++.+.+.+++|+ ..+.|++|+.++..++++..+ . .++..+..++..+.|..+ .+.++++
T Consensus 135 --p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~~r-~a~~~l~ 206 (334)
T 1a5t_A 135 --PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGSPG-AALALFQ 206 (334)
T ss_dssp --CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTCHH-HHHHTTS
T ss_pred --CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCCHH-HHHHHhc
Confidence 2456888888898999999999999 579999999999999988765 2 235566788888887544 4444443
No 126
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.21 E-value=2e-11 Score=122.75 Aligned_cols=85 Identities=16% Similarity=0.284 Sum_probs=70.8
Q ss_pred ceeeeCC-----eEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecC--------CCe
Q 000978 139 NVPICAS-----IFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKK--------NTS 204 (1203)
Q Consensus 139 ~l~i~~~-----~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k--------~~~ 204 (1203)
.+.|... .|+|||+..|||+|.+..||..||+|.....++ .+||+|+ |+|||||||+++.+ +..
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~DlgS~NGT~vNg~~i~~~~~~~~~~~~~ 98 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKF--KWELVDMGSLNGTLVNSHSISHPDLGSRKWGNP 98 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTT--EEEEEETTCSSCCEETTEESSCCCTTTCCCCCC
T ss_pred EEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCC--EEEEEECCCCCCEEECCEECcCcccccccCCce
Confidence 4555543 799999999999999999999999999764433 4799999 78999999999995 889
Q ss_pred eEccCCCEEEEeecCCeEEEEEec
Q 000978 205 CELRSGDEVVFGSLGNHAYIFQQL 228 (1203)
Q Consensus 205 ~~L~~gDeI~f~~~~~~~yif~~l 228 (1203)
+.|++||+|.|+.. .++|..+
T Consensus 99 ~~L~~GD~I~iG~~---~~~~~~~ 119 (139)
T 1mzk_A 99 VELASDDIITLGTT---TKVYVRI 119 (139)
T ss_dssp EECCTTEEEECSSS---CEEEEEE
T ss_pred EECCCCCEEEECCE---EEEEEEc
Confidence 99999999999754 4555544
No 127
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.21 E-value=3.7e-11 Score=115.27 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=67.7
Q ss_pred cceeeeC-CeEEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEE
Q 000978 138 SNVPICA-SIFTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1203)
Q Consensus 138 ~~l~i~~-~~~tvGr~~-~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~ 214 (1203)
..+.|.. ..|+|||+. .||++|.+..||..||+|.....+ . +||+|+ |+|||||||+++.+ .+.|++||+|.
T Consensus 17 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~-~--~~l~Dl~S~nGt~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN-S--VLIEDLGSKNGVIVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTS-C--EEEEECSCSSCCEETTEECSS--EEECCTTCCEE
T ss_pred EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCC-c--EEEEECcCCCCeEECCEECCC--CeECCCCCEEE
Confidence 4566766 469999999 799999999999999999875222 2 799999 77999999999987 68999999999
Q ss_pred EeecCCeEEEEEe
Q 000978 215 FGSLGNHAYIFQQ 227 (1203)
Q Consensus 215 f~~~~~~~yif~~ 227 (1203)
|+.. .|.|..
T Consensus 92 ~G~~---~~~~~~ 101 (106)
T 3gqs_A 92 LGTT---LFLLVD 101 (106)
T ss_dssp ETTE---EEEEEE
T ss_pred ECCE---EEEEEc
Confidence 9653 555553
No 128
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.21 E-value=3.9e-11 Score=122.81 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=68.2
Q ss_pred eeCCeEEEcCCC---CcceeecCCCCccceEEEEEEecCCc-eEEEEEEecCCceEEcCeeecCCCeeEccCCCEEEEee
Q 000978 142 ICASIFTVGSSR---QCNFPLKDQAISAVLCKIKHVQSEGS-AVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGS 217 (1203)
Q Consensus 142 i~~~~~tvGr~~---~cd~~l~~~~~s~~~c~i~~~~~~~~-~~~~led~s~nGt~VNg~~~~k~~~~~L~~gDeI~f~~ 217 (1203)
|....++|||.. .|||+|.+..||..||.|.....++. .++++++.|.|||||||++|.+ .+.|++||+|.|+.
T Consensus 58 L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG~~i~~--~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 58 IKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTE--PSILRSGNRIIMGK 135 (154)
T ss_dssp CCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETTEECCS--CEECCTTCEEEETT
T ss_pred eCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECCEEcCC--ceECCCCCEEEECC
Confidence 345789999976 79999999999999999998755543 3667777889999999999953 78999999999973
Q ss_pred cCCeEEEEEe
Q 000978 218 LGNHAYIFQQ 227 (1203)
Q Consensus 218 ~~~~~yif~~ 227 (1203)
.|.|.|.+
T Consensus 136 --~~~Frf~~ 143 (154)
T 4ejq_A 136 --SHVFRFNH 143 (154)
T ss_dssp --TEEEEEEC
T ss_pred --cEEEEEcC
Confidence 46788875
No 129
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.20 E-value=3.8e-11 Score=122.95 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=67.9
Q ss_pred CcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCCCeeEccCCCEEEE
Q 000978 137 NSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVF 215 (1203)
Q Consensus 137 ~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~f 215 (1203)
...+.|....++|||+..|||+|.+..||..||+|.... +. ++|+|+ |+|||||||++|. .+.|+.||+|.|
T Consensus 77 g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~~--~~l~DlgStNGT~VNG~~i~---~~~L~~GD~I~l 149 (157)
T 3oun_A 77 GRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--QV--ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIRL 149 (157)
T ss_dssp CCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--SC--EEEEECSCSSCCEETTEECS---EEECCTTCEEEE
T ss_pred CeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--CE--EEEEECCCCCCeEECCEECc---eEECCCCCEEEE
Confidence 457788888999999999999999999999999998732 22 799999 7799999999996 699999999999
Q ss_pred eecCCeEEEE
Q 000978 216 GSLGNHAYIF 225 (1203)
Q Consensus 216 ~~~~~~~yif 225 (1203)
+. ..++|
T Consensus 150 G~---~~l~f 156 (157)
T 3oun_A 150 GH---SEIIV 156 (157)
T ss_dssp TT---EEEEE
T ss_pred CC---EEEEE
Confidence 64 34555
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.17 E-value=1.4e-10 Score=128.33 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC--------CcchhhhHHHHHhcCCC-----cEEEEeeeccCCCccccCC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEKSH 708 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~--------~~~~~~~lk~~L~~l~g-----~V~vIGst~~~d~~~~~~~ 708 (1203)
.+..+|+.+.. ..|.|+|||||+.+... +.+....+...|..++| .+++|++++.++..|++
T Consensus 120 ~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~-- 194 (278)
T 1iy2_A 120 RVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA-- 194 (278)
T ss_dssp HHHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH--
T ss_pred HHHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh--
Confidence 35666766655 68999999999986542 12233344444444433 48889999988754444
Q ss_pred CCCccccccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCC
Q 000978 709 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 788 (1203)
Q Consensus 709 ~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N 788 (1203)
|.|+| ||+..|+|++|+.++|.+||+.++.. .....+
T Consensus 195 -----l~r~~----------------------------------rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~~~ 231 (278)
T 1iy2_A 195 -----LLRPG----------------------------------RFDRQIAIDAPDVKGREQILRIHARG----KPLAED 231 (278)
T ss_dssp -----HHSTT----------------------------------SSCCEEECCCCCHHHHHHHHHHHHTT----SCBCTT
T ss_pred -----HcCCC----------------------------------cCCeEEEeCCcCHHHHHHHHHHHHcc----CCCCcc
Confidence 33444 48899999999999999999966532 333344
Q ss_pred chhHHHHhhccCCCcccccchhcc
Q 000978 789 LNHLRTVLGRSGLECEGLETLCIR 812 (1203)
Q Consensus 789 ~~~l~~vL~t~glsc~DL~~Lci~ 812 (1203)
+.....+..+.|+.++||+.+|..
T Consensus 232 ~~~~~la~~~~G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 232 VDLALLAKRTPGFVGADLENLLNE 255 (278)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHH
Confidence 444455566778888888776553
No 131
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.17 E-value=6.2e-11 Score=116.30 Aligned_cols=82 Identities=22% Similarity=0.377 Sum_probs=68.3
Q ss_pred cceeeeCCeEEEcC--CCCcceeecCCCCccceEEEEEEecCCceEEEEEEec-CCceEEcCeeecCCCeeEccCCCEEE
Q 000978 138 SNVPICASIFTVGS--SRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIG-SKGLQVNGKNLKKNTSCELRSGDEVV 214 (1203)
Q Consensus 138 ~~l~i~~~~~tvGr--~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s-~nGt~VNg~~~~k~~~~~L~~gDeI~ 214 (1203)
....|....++||| +..|||+|.+..||..||.|... ++ .++|+|++ +|||||||++|. ..+.|++||+|.
T Consensus 29 ~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~--~~~l~dl~S~ngt~vNg~~i~--~~~~L~~GD~I~ 102 (120)
T 1wln_A 29 KLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DG--VVTVTPRSMDAETYVDGQRIS--ETTMLQSGMRLQ 102 (120)
T ss_dssp CEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SS--CEEEEESCSSSCEEETSCBCS--SCEEECTTCEEE
T ss_pred EEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CC--EEEEEECCCCCCEEECCEEcC--CCEECCCCCEEE
Confidence 34667778899996 57999999999999999999863 33 37999995 799999999997 468999999999
Q ss_pred EeecCCeEEEEEe
Q 000978 215 FGSLGNHAYIFQQ 227 (1203)
Q Consensus 215 f~~~~~~~yif~~ 227 (1203)
|+.. +.|.|..
T Consensus 103 iG~~--~~~~f~~ 113 (120)
T 1wln_A 103 FGTS--HVFKFVD 113 (120)
T ss_dssp ETTT--EEEEEEC
T ss_pred ECCc--eEEEEEC
Confidence 9763 5677763
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.13 E-value=7.9e-11 Score=118.18 Aligned_cols=124 Identities=8% Similarity=0.139 Sum_probs=80.1
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccc
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 978 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G 978 (1203)
++.|.....+.+.+.+... .....+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 3456666666666655421 1122469999999999999999999987 78999 999887543
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-------
Q 000978 979 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP------- 1051 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p------- 1051 (1203)
......|..+. .++|||||||.+- . .....|+..+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l~-----~-------~~q~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHLT-----R-------EQQYHLVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGSC-----H-------HHHHHHHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHCC-----H-------HHHHHHHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 22334555554 4899999999882 1 122233333322 23456788888864
Q ss_pred CCCcHHHHhccc
Q 000978 1052 FDLDEAVIRRLP 1063 (1203)
Q Consensus 1052 ~~Ld~aLlrRFd 1063 (1203)
..+.+.+..|+.
T Consensus 124 ~~~~~~L~~rl~ 135 (145)
T 3n70_A 124 NHIIAELYYCFA 135 (145)
T ss_dssp SCCCHHHHHHHH
T ss_pred CCCCHHHHHHhc
Confidence 246667777763
No 133
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.13 E-value=2e-10 Score=113.40 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=63.8
Q ss_pred CeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCCeeEccCCCEEEEeecCCeEEE
Q 000978 145 SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYI 224 (1203)
Q Consensus 145 ~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~~~L~~gDeI~f~~~~~~~yi 224 (1203)
...+|||...|||+|.+..||..||.|.... ++ .++|+|+++|||||||+.|. ..+.|++||.|.|+.. +.|.
T Consensus 48 ~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g--~~~l~dl~~ngt~VNG~~V~--~~~~L~~GD~I~lG~~--~~Fr 120 (124)
T 3fm8_A 48 EHTLIGSANSQDIQLCGMGILPEHCIIDITS-EG--QVMLTPQKNTRTFVNGSSVS--SPIQLHHGDRILWGNN--HFFR 120 (124)
T ss_dssp SEEEEESSTTCSEECCSTTCCSSCEEEEECT-TS--CEEEEECTTCCEEETTEECC--SCEEECTTCEEEETTT--EEEE
T ss_pred CCeEECCCCCCCEEECCCCeecceEEEEECC-CC--eEEEEECCCCCEEECCEEcC--CcEECCCCCEEEECCC--eEEE
Confidence 3579999999999999999999999997532 22 36999999999999999997 4799999999999753 5666
Q ss_pred EE
Q 000978 225 FQ 226 (1203)
Q Consensus 225 f~ 226 (1203)
|.
T Consensus 121 Fn 122 (124)
T 3fm8_A 121 LN 122 (124)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 134
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.12 E-value=1e-10 Score=136.34 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=80.2
Q ss_pred CCcchhhcccCCCCcceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-cCCceEEcCeeecCC
Q 000978 124 STPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKN 202 (1203)
Q Consensus 124 ~~pWgrL~s~~~~~~~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~ 202 (1203)
..||..|+... ....+.|....++|||+..|||+|.+..||..||+|... ++. +||+|+ |+|||||||++|.
T Consensus 286 ~~~~~~l~~~~-~g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt~vng~~i~-- 358 (388)
T 2ff4_A 286 QQAVAYLHDIA-SGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGVHVQHERIR-- 358 (388)
T ss_dssp SBCCCEEEETT-TCCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCCEETTEECS--
T ss_pred CCCeEEEEECC-CCcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCeEECCEECC--
Confidence 46888888754 447899999999999999999999999999999999873 232 799998 6799999999995
Q ss_pred CeeEccCCCEEEEeecCCeEEEEEec
Q 000978 203 TSCELRSGDEVVFGSLGNHAYIFQQL 228 (1203)
Q Consensus 203 ~~~~L~~gDeI~f~~~~~~~yif~~l 228 (1203)
..+.|++||+|.|+. ..|.|...
T Consensus 359 ~~~~L~~gd~i~~G~---~~~~~~~~ 381 (388)
T 2ff4_A 359 SAVTLNDGDHIRICD---HEFTFQIS 381 (388)
T ss_dssp SEEEECTTCEEEETT---EEEEEECS
T ss_pred CceECCCCCEEEECC---EEEEEEeC
Confidence 589999999999975 46677643
No 135
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=1.2e-09 Score=126.10 Aligned_cols=205 Identities=15% Similarity=0.100 Sum_probs=126.5
Q ss_pred ccccccHHHHHHHHHHH-hCccCchhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEEe
Q 000978 901 DDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINIS 968 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v-~~pl~~~e~f~k~~~~~P~~gVLL--~GPPGTGKT~LArALA~eL---------g~~fi~I~ 968 (1203)
.++.|.+...+.|.+.+ ..... + ....+..++| +||+|+|||+|++++++.+ ++.++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56788888777777776 42111 1 0022357999 9999999999999999877 56788888
Q ss_pred cccccc------cc---c-------ccc-HHHHHHHHHHHH-hcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 969 MSSITS------KW---F-------GEG-EKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 969 ~seL~s------~~---~-------G~~-e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
+..... .. + +.. ......+..... ...|.||+|||++.+...+. .... ++..++..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~----~l~~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAE----DLYTLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHH----HHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchH----HHHHHHHH
Confidence 743211 00 0 111 122233333322 23578999999998853210 1122 23333333
Q ss_pred hcCCcccCC--ccEEEEEecCCCC---CCc---HHHHhcccccccCCCCCHHHHHHHHHHHHhhCC---CCCchhHHHHH
Q 000978 1031 WDGLRTKDT--ERILVLAATNRPF---DLD---EAVIRRLPRRLMVNLPDAPNRAKILQVILAKED---LSPDVDFDAIA 1099 (1203)
Q Consensus 1031 ldgl~~~~~--~~VlVIaTTN~p~---~Ld---~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~---l~~d~dl~~LA 1099 (1203)
+..... +. .++.||++++.+. .++ +.+.++|...+.+++++.++..++++..+.... ...+..+..++
T Consensus 168 ~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 168 HEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 322211 12 5788888887654 334 566677766699999999999999988765321 22345677888
Q ss_pred HHcC------CCcHHHHHHHHHHHHHHH
Q 000978 1100 NMTD------GYSGSDLKNLCVTAAHRP 1121 (1203)
Q Consensus 1100 ~~T~------G~Sg~DL~~L~~~Aa~~a 1121 (1203)
..+. | .+..+..++..|+..+
T Consensus 247 ~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 8888 7 4567777777766543
No 136
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.09 E-value=2.4e-11 Score=121.84 Aligned_cols=130 Identities=11% Similarity=0.105 Sum_probs=81.5
Q ss_pred cccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccH
Q 000978 902 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 981 (1203)
Q Consensus 902 dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e 981 (1203)
+++|.....+.+.+.+... . ....+|||+||||||||++|+++++.+. +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-------~-----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-------A-----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-------H-----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 4567777777777766521 1 1124699999999999999999999888 99999998765433
Q ss_pred HHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-CC----CcH
Q 000978 982 KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FD----LDE 1056 (1203)
Q Consensus 982 ~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-~~----Ld~ 1056 (1203)
...+|..+. .++|||||||.+- ...+.. ++..++.. ...++.+|+|||.+ .. +++
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l~-----~~~q~~-------Ll~~l~~~---~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQYS-----RNIQTG-------ITFIIGKA---ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTCC-----HHHHHH-------HHHHHHHH---TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHCC-----HHHHHH-------HHHHHHhC---CCCCEEEEEecCCCHHHHHhCccH
Confidence 345555554 4899999999882 112222 22222221 13457788888754 33 445
Q ss_pred HHHhcccc-cccCC
Q 000978 1057 AVIRRLPR-RLMVN 1069 (1203)
Q Consensus 1057 aLlrRFd~-~I~v~ 1069 (1203)
.+..||.. .|.++
T Consensus 127 ~L~~rl~~~~i~lP 140 (143)
T 3co5_A 127 KLAGLFSESVVRIP 140 (143)
T ss_dssp HHHHHSSSEEEEEC
T ss_pred HHHHHhcCcEEeCC
Confidence 56667632 34444
No 137
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=2.6e-09 Score=120.76 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=103.2
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccccccccc
Q 000978 905 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 978 (1203)
Q Consensus 905 Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL------g~~fi~I~~seL~s~~~G 978 (1203)
|++++.+.|+..+.. + + ...+||+||||+|||++|+++|+.+ ...++.++++.- .
T Consensus 1 g~~~~~~~L~~~i~~----------~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----N 61 (305)
T ss_dssp ---CHHHHHHHHHHT----------C---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----C
T ss_pred ChHHHHHHHHHHHHC----------C---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----C
Confidence 456666777776652 1 2 3589999999999999999999874 346777775420 1
Q ss_pred ccHHHHHHHHHHHHhcC----CceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCC
Q 000978 979 EGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1054 (1203)
Q Consensus 979 ~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1054 (1203)
..-..++.++..+...+ ..|+||||+|.|- ....+.|+..++.. +.++++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhC
Confidence 22345677887776543 4699999999882 22345566666543 4567777778888999
Q ss_pred cHHHHhcccccccCCCCCHHHHHHHHHHHH
Q 000978 1055 DEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1084 (1203)
Q Consensus 1055 d~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l 1084 (1203)
.+++++| ++.|.+|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 89999999999999998876
No 138
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.04 E-value=6.9e-10 Score=136.37 Aligned_cols=222 Identities=19% Similarity=0.243 Sum_probs=127.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccc-
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSIT- 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~---fi~I~~seL~- 973 (1203)
..|+++.|.+.+.+.+...+.. + ..+||+||||||||+||++||..+... .+.+.+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~----------g------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ----------K------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT----------T------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred cccceEECchhhHhhccccccC----------C------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 4688999999999888777652 1 379999999999999999999988422 2222211110
Q ss_pred -cccc-----cccHH-------------------------------------------------HHHHHHH---------
Q 000978 974 -SKWF-----GEGEK-------------------------------------------------YVKAVFS--------- 989 (1203)
Q Consensus 974 -s~~~-----G~~e~-------------------------------------------------~I~~lF~--------- 989 (1203)
...+ +.... ....+|.
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 0000 00000 0111111
Q ss_pred --------------HHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCC----------cccCCccEEEE
Q 000978 990 --------------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDTERILVL 1045 (1203)
Q Consensus 990 --------------~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl----------~~~~~~~VlVI 1045 (1203)
......+++|||||++.| ++..+..+.+++++-...+.+. ....+.++.||
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI 256 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLV 256 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEE
T ss_pred CCccccccccccCceeeecCCCEEEEechhhC-----CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEE
Confidence 011224579999999987 3333344444443322222221 11123578899
Q ss_pred EecCCC--CCCcHHHHhccc---ccccCCC--C-CHHHHHHHHHHHHhhCC-----C-CCchhHHHHHHHc---CCC---
Q 000978 1046 AATNRP--FDLDEAVIRRLP---RRLMVNL--P-DAPNRAKILQVILAKED-----L-SPDVDFDAIANMT---DGY--- 1105 (1203)
Q Consensus 1046 aTTN~p--~~Ld~aLlrRFd---~~I~v~~--P-d~eeR~eIL~~~l~~~~-----l-~~d~dl~~LA~~T---~G~--- 1105 (1203)
+|||+. ..++++|++||. ..+.|+. + ..+....+++.+..... . ..+..+..|.+.. .|.
T Consensus 257 ~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~ 336 (604)
T 3k1j_A 257 AAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGH 336 (604)
T ss_dssp EEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTE
T ss_pred EecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccc
Confidence 999976 679999999995 3444432 2 34556666655443211 1 1233345554432 442
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHH
Q 000978 1106 ---SGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHER 1166 (1203)
Q Consensus 1106 ---Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDf~~Al~~ 1166 (1203)
+.+++.++++.|...+..+ ....|+.+|+.+|+..
T Consensus 337 l~~~~R~l~~llr~A~~~A~~~--------------------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAVKK--------------------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhc--------------------------CcccccHHHHHHHHHh
Confidence 5788888888775433211 1246899999999964
No 139
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.01 E-value=6.5e-10 Score=103.22 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000978 1072 DAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCAD 1151 (1203)
Q Consensus 1072 d~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~ 1151 (1203)
+.++|.+||+.++.+..+..++|+..||..|+||||+||.+||++|++.++++ .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~--------------------------~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA--------------------------R 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH--------------------------S
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--------------------------c
Confidence 67899999999999998888999999999999999999999999999999886 1
Q ss_pred CccccHHHHHHHHHHhcccccccccchhhhHHHH
Q 000978 1152 IRPLNMDDFKYAHERVCASVSSESVNMSELLQWN 1185 (1203)
Q Consensus 1152 ~r~Lt~eDf~~Al~~v~pS~s~e~~~~~~~v~W~ 1185 (1203)
...|+++||..|++++.++....... ..+..||
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~~-~~y~~w~ 88 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSST-SRYMQYN 88 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC----------------
T ss_pred cccCCHHHHHHHHHHHhcCcccccch-hHHhccC
Confidence 24699999999999999998776433 3455786
No 140
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.99 E-value=5.8e-10 Score=148.70 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=108.0
Q ss_pred CCCcccccccccHHHHHHHHHHHhCccCc----------hhhhhc------CCC---------CCCCce--EEEEcCCCC
Q 000978 895 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQL---------TKPCKG--ILLFGPPGT 947 (1203)
Q Consensus 895 ~~~vt~~dI~Gle~vk~~L~e~v~~pl~~----------~e~f~k------~~~---------~~P~~g--VLL~GPPGT 947 (1203)
...++|++++|++++|+.+.+.+.+|+.+ ++.|.. .+. .-++++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44589999999999999999999998843 445544 111 113344 999999999
Q ss_pred hHHHHHHHHHHHh---CCcEEEEeccccc------------cccccc----cHHHHHHHHHHHHhcCCceEEEccchhhc
Q 000978 948 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 948 GKT~LArALA~eL---g~~fi~I~~seL~------------s~~~G~----~e~~I~~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
|||+||+++|.+. |-+.+.++..+.. ++|+++ .|+.++.+|..|+...|++||+|+|+.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 6677777766543 677777 89999999999999999999999999998
Q ss_pred cCCC-----CCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 1009 GRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 1009 ~~r~-----~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
+.+. .........+++++++..++++.. ..+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~--~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--HTTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhc--cCCeEEE-Eecc
Confidence 7732 111124556788889988888643 3567777 5665
No 141
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.94 E-value=9.5e-10 Score=101.81 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=70.5
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000978 1067 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPAL 1146 (1203)
Q Consensus 1067 ~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~ 1146 (1203)
+-.+|+.++|.+||+.++++..+..++|++.||..|+||||+||.+||++|++.++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 34689999999999999999888889999999999999999999999999999998852
Q ss_pred CCCCCCccccHHHHHHHHHHhccc
Q 000978 1147 SGCADIRPLNMDDFKYAHERVCAS 1170 (1203)
Q Consensus 1147 ~~~~~~r~Lt~eDf~~Al~~v~pS 1170 (1203)
...|+++||.+|++++.|.
T Consensus 66 -----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 -----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -----CSEECHHHHHHHHHHHHCC
T ss_pred -----CCCCCHHHHHHHHHHHccC
Confidence 2579999999999999774
No 142
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=98.00 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 000978 1069 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSG 1148 (1203)
Q Consensus 1069 ~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~ 1148 (1203)
++|+.++|.+||+.++.+..+..++++..||..|+||||+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~------------------------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------------------------
Confidence 58999999999999999988878999999999999999999999999999998875
Q ss_pred CCCCccccHHHHHHHHHHhcc
Q 000978 1149 CADIRPLNMDDFKYAHERVCA 1169 (1203)
Q Consensus 1149 ~~~~r~Lt~eDf~~Al~~v~p 1169 (1203)
....|+++||.+|++++..
T Consensus 57 --~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --TCSEECHHHHHHHHHHHHC
T ss_pred --CCCCCCHHHHHHHHHHHHh
Confidence 2357999999999999854
No 143
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.91 E-value=4.9e-09 Score=99.82 Aligned_cols=94 Identities=16% Similarity=0.282 Sum_probs=78.9
Q ss_pred chhhcccCCCCcceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCCee
Q 000978 127 WCRLLSQSGQNSNVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSC 205 (1203)
Q Consensus 127 WgrL~s~~~~~~~l~i~~-~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~~ 205 (1203)
-|-|.|+....+.|.|+. ...+|||+..|.| +|..+|..||.|.-...++ .+.+.++|.|+++|||+.++|+..+
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g--~v~vk~lg~Np~~vng~~l~k~~~~ 79 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKG--YVKVKQVGVNPTSIDSVVIGKDQEV 79 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTT--EEEEEECSSSCCEETTEECCBTCEE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCC--EEEEEECcCCCCeECCEEcCCCCeE
Confidence 367889998889999987 4588999998855 7999999999998665444 5799999999999999999999999
Q ss_pred EccCCCEEEEeecCCeEEEE
Q 000978 206 ELRSGDEVVFGSLGNHAYIF 225 (1203)
Q Consensus 206 ~L~~gDeI~f~~~~~~~yif 225 (1203)
.|++||.|.+. ++.|.|-+
T Consensus 80 ~L~~GD~l~Ll-~~~~~~~v 98 (102)
T 3kt9_A 80 KLQPGQVLHMV-NELYPYIV 98 (102)
T ss_dssp EECTTCCEEEE-TTEEEEEE
T ss_pred EeCCCCEEEEc-cCCceEEE
Confidence 99999999885 44444444
No 144
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.90 E-value=4.5e-09 Score=101.10 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=80.0
Q ss_pred chhhcccCCCCcceeee--CCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCCe
Q 000978 127 WCRLLSQSGQNSNVPIC--ASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTS 204 (1203)
Q Consensus 127 WgrL~s~~~~~~~l~i~--~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~ 204 (1203)
-|.|.|+....|.|.|+ ....+|||+. +..+.|..+|..||+|.-...++ .+.+.++|.|+++|||.+++|+..
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p--~t~I~DkrcSR~hv~L~ad~~~~--~v~vk~lG~Np~~vng~~l~k~~~ 84 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGP--LTQVTDRKCSRTQVELVADPETR--TVAVKQLGVNPSTTGTQELKPGLE 84 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBT--TTTBCCTTSCSSCEEEEEETTTT--EEEEEECSSSCCEEC-CBCCTTCE
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccceeeeEEEEEecCCC--EEEEEEcccCCcEECCEEcCCCCE
Confidence 68899999999999997 5899999999 55589999999999998544333 468899999999999999999999
Q ss_pred eEccCCCEEEEeecCCeEEEEE
Q 000978 205 CELRSGDEVVFGSLGNHAYIFQ 226 (1203)
Q Consensus 205 ~~L~~gDeI~f~~~~~~~yif~ 226 (1203)
+.|++||.|.+ .++.|.|.++
T Consensus 85 ~~L~~GD~leL-l~g~y~~~v~ 105 (110)
T 2brf_A 85 GSLGVGDTLYL-VNGLHPLTLR 105 (110)
T ss_dssp EEEETTCEEEE-ETTEEEEEEE
T ss_pred EEecCCCEEEE-ccCCeEEEEE
Confidence 99999999998 4565555554
No 145
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.86 E-value=5.8e-09 Score=124.42 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=86.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchh
Q 000978 643 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQT 722 (1203)
Q Consensus 643 i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~ 722 (1203)
+..+|+.+.. .+|.||||| +..++.+.|++.|+ .|.+.|||+||..++.+
T Consensus 256 ~~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~------------------ 305 (468)
T 3pxg_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRK------------------ 305 (468)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHH------------------
T ss_pred HHHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHHHHH------------------
Confidence 4556666655 789999999 67788888888886 48999999999887421
Q ss_pred hhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCC
Q 000978 723 ALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLE 802 (1203)
Q Consensus 723 ~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~gls 802 (1203)
..+++.+|.+|| +.|.|.+|+.+++..||+..+.++.. .+++.....++. .
T Consensus 306 --------------------~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~~~~----~~~~~i~~~al~----~ 356 (468)
T 3pxg_A 306 --------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA----HHRVSITDDAIE----A 356 (468)
T ss_dssp --------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG----GSSCSCCHHHHH----H
T ss_pred --------------------HhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHHHHH----hcCCCCCHHHHH----H
Confidence 122467888999 68999999999999999977655332 222222222222 1
Q ss_pred cccccchhccccccchHHHHHHHHHHHhhhhhcCC
Q 000978 803 CEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNP 837 (1203)
Q Consensus 803 c~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~ 837 (1203)
...+...++.+..++.+.++.+...+....+....
T Consensus 357 l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~ 391 (468)
T 3pxg_A 357 AVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFT 391 (468)
T ss_dssp HHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCC
Confidence 12344556667778888888777666555554433
No 146
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.81 E-value=1.3e-08 Score=101.25 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=83.5
Q ss_pred CcchhhcccCCCCcceeee--CCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCC
Q 000978 125 TPWCRLLSQSGQNSNVPIC--ASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKN 202 (1203)
Q Consensus 125 ~pWgrL~s~~~~~~~l~i~--~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~ 202 (1203)
.+-|.|.|+....+.|.|+ ....+|||+. ...|.|..+|..||+|.-.-.++ .+.+.++|.|+++|||.+++|+
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~ad~~~g--~V~Vk~lG~NP~~vng~~L~k~ 82 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIADPESR--TVAVKQLGVNPSTVGVHELKPG 82 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEEEETTTT--EEEEEECSSSCCEETTEECCTT
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEEEecCCC--eEEEEEcccCCcEECCEEecCC
Confidence 4679999999999999997 5899999999 55789999999999998543333 4689999999999999999999
Q ss_pred CeeEccCCCEEEEeecCCeEEEEEe
Q 000978 203 TSCELRSGDEVVFGSLGNHAYIFQQ 227 (1203)
Q Consensus 203 ~~~~L~~gDeI~f~~~~~~~yif~~ 227 (1203)
..+.|++||.|.+ .+|.|.|.|.-
T Consensus 83 ~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 83 LSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp CEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CEEEecCCCEEEE-ecCCceEEEEe
Confidence 9999999999987 45666666653
No 147
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.80 E-value=5.5e-09 Score=95.56 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000978 1072 DAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCAD 1151 (1203)
Q Consensus 1072 d~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~ 1151 (1203)
+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|++.++++ .
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~--------------------------~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE--------------------------N 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS--------------------------C
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------------------------c
Confidence 67899999999999988888899999999999999999999999999998774 1
Q ss_pred CccccHHHHHHHHHHhccccc
Q 000978 1152 IRPLNMDDFKYAHERVCASVS 1172 (1203)
Q Consensus 1152 ~r~Lt~eDf~~Al~~v~pS~s 1172 (1203)
..+|+++||..|++++.|+..
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 257999999999999999987
No 148
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=2.6e-08 Score=138.20 Aligned_cols=139 Identities=24% Similarity=0.408 Sum_probs=93.9
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEeccccccccccccHHHHHHHHHHHH---------------hcCCceEE
Q 000978 937 KGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLAS---------------KIAPSVIF 1000 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArAL-A~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~---------------k~~PsILf 1000 (1203)
+++||+||||||||++|+.+ +...+..++.++++...+ ...+...++... ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 58999999999999999555 444478888888876543 223333333321 11236999
Q ss_pred EccchhhccCCCCCchhHHHHHHHHHHHHhhcCCccc------CCccEEEEEecCCC-----CCCcHHHHhcccccccCC
Q 000978 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAATNRP-----FDLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~------~~~~VlVIaTTN~p-----~~Ld~aLlrRFd~~I~v~ 1069 (1203)
||||+.-...+ -+.+. ...++.+++. ..+.... .-.++.+|||+|++ ..|+++++||| .++.++
T Consensus 1342 iDEinmp~~d~--yg~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDK--YGSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCS--SSCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred ecccccccccc--cCchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 99998542222 12222 2344444442 2222111 11468999999998 48999999999 889999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 000978 1070 LPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1070 ~Pd~eeR~eIL~~~l~~ 1086 (1203)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 149
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.73 E-value=2.9e-08 Score=115.67 Aligned_cols=132 Identities=23% Similarity=0.356 Sum_probs=79.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHH-------HHHHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEK-------YVKAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-----~~~G~~e~-------~I~~lF~~A~k~~PsILfI 1001 (1203)
..|||+|++||||+++|+++.... +.+|+.++|+.+.. ..+|.... .....|+.|.. ++|||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfl 237 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFL 237 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEE
Confidence 458999999999999999999877 47999999987632 22222111 01234555544 89999
Q ss_pred ccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000978 1002 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 1002 DEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
|||+.| +...+..+.+++++-...--+.......++.||+|||.. ..+.+.+..|+ ..+.+..|...
T Consensus 238 dei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLr 311 (387)
T 1ny5_A 238 DEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLR 311 (387)
T ss_dssp ESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGG
T ss_pred cChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcch
Confidence 999988 322333333333321100011111123567899999963 34556666666 34456666665
Q ss_pred HHH
Q 000978 1075 NRA 1077 (1203)
Q Consensus 1075 eR~ 1077 (1203)
+|.
T Consensus 312 eR~ 314 (387)
T 1ny5_A 312 ERK 314 (387)
T ss_dssp GCH
T ss_pred hcc
Confidence 553
No 150
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.72 E-value=9e-09 Score=100.17 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=82.1
Q ss_pred CcchhhcccCCCCcceeee--CCeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCC
Q 000978 125 TPWCRLLSQSGQNSNVPIC--ASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKN 202 (1203)
Q Consensus 125 ~pWgrL~s~~~~~~~l~i~--~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~ 202 (1203)
..-|.|.|+....|.|.|+ ....+|||++ +..+.|..+|..||+|.-.-.++ .+.+.+++.|+++|||.+++|+
T Consensus 14 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp--~t~I~DkrcSR~qv~L~ad~~~~--~v~vk~lG~NP~~vng~~l~k~ 89 (119)
T 1ujx_A 14 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIADPESR--TVAVKQLGVNPSTVGVQELKPG 89 (119)
T ss_dssp CCCEEEECCSSSCCCCCCCTTSCCEEESBBT--TTTBCCTTSCTTSEEEEEETTTT--EEEEEECSSSCCBSSSSBCCTT
T ss_pred cceEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccccceeEEEEEecCCC--EEEEEEcccCCcEECCEEecCC
Confidence 4578999999999999997 5889999999 55689999999999998543333 4688999999999999999999
Q ss_pred CeeEccCCCEEEEeecCCeEEEEE
Q 000978 203 TSCELRSGDEVVFGSLGNHAYIFQ 226 (1203)
Q Consensus 203 ~~~~L~~gDeI~f~~~~~~~yif~ 226 (1203)
..+.|++||.|.+ .++.|.|-|+
T Consensus 90 ~~~~L~~GD~l~L-l~g~y~~~v~ 112 (119)
T 1ujx_A 90 LSGSLSLGDVLYL-VNGLYPLTLR 112 (119)
T ss_dssp CEEEEETTCCCBC-BTTBSCCEEE
T ss_pred CEEEecCCCEEEE-ecCCeEEEEE
Confidence 9999999999987 4555566554
No 151
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.67 E-value=9.8e-08 Score=100.36 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=67.1
Q ss_pred CCeEEEcCCC---CcceeecCCCCccceEEEEEEecCC-ceEEEEEEecCCceEEcCeeecCCCeeEccCCCEEEEeecC
Q 000978 144 ASIFTVGSSR---QCNFPLKDQAISAVLCKIKHVQSEG-SAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSLG 219 (1203)
Q Consensus 144 ~~~~tvGr~~---~cd~~l~~~~~s~~~c~i~~~~~~~-~~~~~led~s~nGt~VNg~~~~k~~~~~L~~gDeI~f~~~~ 219 (1203)
...-+|||.. .|||.|.+..|+..||.|.....++ ..+++|+..+.+.|||||+.|. ..+.|++||.|.|+ .
T Consensus 90 ~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~--~~~~L~~GDrI~lG--~ 165 (184)
T 4egx_A 90 DGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVT--EPSILRSGNRIIMG--K 165 (184)
T ss_dssp SEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETTEECC--SCEECCTTCEEEET--T
T ss_pred CCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcCEEcc--ccEEcCCCCEEEEC--C
Confidence 4678999964 6999999999999999998765443 3478999998888999999996 47899999999997 4
Q ss_pred CeEEEEEe
Q 000978 220 NHAYIFQQ 227 (1203)
Q Consensus 220 ~~~yif~~ 227 (1203)
+|.|.|..
T Consensus 166 ~h~Frfn~ 173 (184)
T 4egx_A 166 SHVFRFNH 173 (184)
T ss_dssp TEEEEEEC
T ss_pred CCEEEECC
Confidence 57788864
No 152
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.66 E-value=9.6e-08 Score=112.90 Aligned_cols=153 Identities=19% Similarity=0.137 Sum_probs=90.2
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEe-cc---ccccccc
Q 000978 903 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINIS-MS---SITSKWF 977 (1203)
Q Consensus 903 I~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArAL-A~eLg~~fi~I~-~s---eL~s~~~ 977 (1203)
|.|++.+|..|.-.+...... .+..-+|||.|+||+ ||+||+++ ++.+....+... ++ .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 578999988887666542211 111137999999999 99999999 665533222111 11 1111100
Q ss_pred cc-cHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC----
Q 000978 978 GE-GEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---- 1052 (1203)
Q Consensus 978 G~-~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---- 1052 (1203)
+. .-..-...+..|.. .|+|||||+.+ +...+.++.+.+++-...+.|. .-+.++.||||+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 00 00000112334433 89999999987 4455566666666554445554 4467899999999875
Q ss_pred -------CCcHHHHhcccccc-cCCCCCHHH
Q 000978 1053 -------DLDEAVIRRLPRRL-MVNLPDAPN 1075 (1203)
Q Consensus 1053 -------~Ld~aLlrRFd~~I-~v~~Pd~ee 1075 (1203)
.|++++++||+..+ .++.|+.+.
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred CCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 88999999997644 456666544
No 153
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.63 E-value=7.9e-09 Score=122.16 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCccccccccccccccc-hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 000978 385 DGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1203)
Q Consensus 385 ~~~~i~vsf~~fpyyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1203)
+|++|.-.|+.+ .+. ++.|..|..+++-|+++..+....+ .....+.|||.|||| +++++||||||+.++++++
T Consensus 5 tP~~i~~~Ld~~--IvGqe~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppG--tGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 5 TPREIVSELDQH--IIGQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp CHHHHHHHHHTT--CCSCHHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCC--CCHHHHHHHHHHHcCCCce
Confidence 344455555542 222 8999999999999988776543221 122457899999999 9999999999999999999
Q ss_pred Eeeccccc
Q 000978 464 IFDSHSLL 471 (1203)
Q Consensus 464 ~~d~~~~~ 471 (1203)
.+|.+.+.
T Consensus 80 ~v~~~~~~ 87 (444)
T 1g41_A 80 KVEATKFT 87 (444)
T ss_dssp EEEGGGGC
T ss_pred eecchhhc
Confidence 99985553
No 154
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.61 E-value=6.3e-08 Score=90.85 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=57.7
Q ss_pred CcceeeeC-CeEEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEecCCc-eEEcCeeecCCCeeEccCCCEE
Q 000978 137 NSNVPICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKG-LQVNGKNLKKNTSCELRSGDEV 213 (1203)
Q Consensus 137 ~~~l~i~~-~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nG-t~VNg~~~~k~~~~~L~~gDeI 213 (1203)
.|.+.+.. ..|+|||.++|+++|+++++|..|+.|.+...+ .|+ +.|.|| |||||.++ ..+.|..||-|
T Consensus 12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~-l~S~nGtVFVNGqrv---~~~~I~~gDtI 82 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVR-LAALVGKIFVNDQEE---TVVDIGMENAV 82 (102)
T ss_dssp SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEE-EEESSSCEEETTEEE---SEEEECGGGCB
T ss_pred cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEE-EEeccCcEEECCEEe---eeEEccCCccc
Confidence 44444444 679999999999999999999999999988665 344 349999 79999999 58999999984
No 155
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.60 E-value=5e-08 Score=100.53 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=58.8
Q ss_pred cccccccc----cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000978 898 VTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1203)
Q Consensus 898 vt~~dI~G----le~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~ 969 (1203)
.+|+++.+ ...+.+.+++++... . ..+..+++|+||+|+|||+|++++++.+ |..++.+++
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVHNF----------N-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHHSC----------C-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CccccccCCCHHHHHHHHHHHHHHHhc----------c-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 46666664 344455555555421 1 1123679999999999999999999887 667777877
Q ss_pred cccccccccccHHH-HHHHHHHHHhcCCceEEEccchhh
Q 000978 970 SSITSKWFGEGEKY-VKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 970 seL~s~~~G~~e~~-I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.++...+....... ...++.. -..|.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 66543321110000 0011111 225789999999843
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.60 E-value=1e-07 Score=106.09 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCeEEEEcchhhhhcC------CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCC
Q 000978 657 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 730 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~------~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~ 730 (1203)
.+.||||||+|.+... ..+..+.|-..|+....+++||++++..+. +.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-----------------------~~--- 183 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-----------------------EN--- 183 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-----------------------HH---
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-----------------------HH---
Confidence 4679999999997642 445666777777777789999999986531 00
Q ss_pred CccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 731 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 731 ~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
...++.+|.+||+..|.|+.|+.+++..||+..+.+
T Consensus 184 ------------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 184 ------------FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ------------HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ------------HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 011356788899999999999999999999977754
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.58 E-value=1.4e-07 Score=95.58 Aligned_cols=105 Identities=24% Similarity=0.318 Sum_probs=68.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCC
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1012 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1012 (1203)
...++|+||+|+|||+|+++++..+ |..++.++..++... +....+.||+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 3579999999999999999999988 777888888776543 112357899999998762
Q ss_pred CCchhHHHHHHHHHHHHhhcCCcccCCccE-EEEEecCCCCCCc--HHHHhcccccccCC
Q 000978 1013 NPGEHEAMRKMKNEFMVNWDGLRTKDTERI-LVLAATNRPFDLD--EAVIRRLPRRLMVN 1069 (1203)
Q Consensus 1013 ~~~~~~al~~il~eLL~~ldgl~~~~~~~V-lVIaTTN~p~~Ld--~aLlrRFd~~I~v~ 1069 (1203)
...+..+..+++.+.. .+.. +||++...+..+. +.+.+|+..-..+.
T Consensus 97 -~~~~~~l~~li~~~~~---------~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 97 -NEEQALLFSIFNRFRN---------SGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp -SHHHHHHHHHHHHHHH---------HTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred -hHHHHHHHHHHHHHHH---------cCCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 1123333333333321 1222 4444433454332 89999986554443
No 158
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.55 E-value=9.8e-07 Score=99.05 Aligned_cols=186 Identities=15% Similarity=0.136 Sum_probs=111.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~---- 973 (1203)
.....+.|-+...+.|.+ +.. ..++|+||+|+|||+|++.++++++..++.+++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 345677888887777776 421 3799999999999999999999998778888875420
Q ss_pred -c--ccc-------------------------c--------c------cHHHHHHHHHHHHhc--CCceEEEccchhhcc
Q 000978 974 -S--KWF-------------------------G--------E------GEKYVKAVFSLASKI--APSVIFVDEVDSMLG 1009 (1203)
Q Consensus 974 -s--~~~-------------------------G--------~------~e~~I~~lF~~A~k~--~PsILfIDEID~L~~ 1009 (1203)
+ ... + . ....+..++....+. .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 000 0 0 011233444444332 388999999998753
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCc---------HHHHhcccccccCCCCCHHHHHHHH
Q 000978 1010 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---------EAVIRRLPRRLMVNLPDAPNRAKIL 1080 (1203)
Q Consensus 1010 ~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld---------~aLlrRFd~~I~v~~Pd~eeR~eIL 1080 (1203)
.. ...... .+..+... . .++.+|.|++....+. ..+..|+...+.+.+.+.++..+++
T Consensus 152 ~~-~~~~~~----~l~~~~~~---~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LR-GVNLLP----ALAYAYDN---L-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CT-TCCCHH----HHHHHHHH---C-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cC-chhHHH----HHHHHHHc---C-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 11 111112 22222211 1 2456666665421111 1122344567889999999999999
Q ss_pred HHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1081 QVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1081 ~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
...+...+...+. ...+...+.|+. .-+..++..
T Consensus 219 ~~~~~~~~~~~~~-~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD-YEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC-HHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHcCCCCCc-HHHHHHHhCCCH-HHHHHHHHH
Confidence 9877644433332 378888998864 456655544
No 159
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.49 E-value=9.3e-08 Score=110.70 Aligned_cols=176 Identities=21% Similarity=0.280 Sum_probs=94.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccccc-----cccccHHH-------HHHHHHHHHhcCCceEEEc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~--~fi~I~~seL~s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfID 1002 (1203)
..+||+|++||||+++|+++....+. .|+.++|+.+... .+|..... -...|+.|.. ++||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEec
Confidence 35999999999999999999988743 3999999875321 22221110 1124555544 799999
Q ss_pred cchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHH
Q 000978 1003 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPN 1075 (1203)
Q Consensus 1003 EID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~ee 1075 (1203)
||+.| +...+..+.+++++-...--+.......++.+|++||.. ..+.+.+..|+. .+.+..|...+
T Consensus 230 ei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~-~~~i~lPpLre 303 (368)
T 3dzd_A 230 EVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLS-VFQIYLPPLRE 303 (368)
T ss_dssp TGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-SEEEECCCGGG
T ss_pred ChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhC-CeEEeCCChhh
Confidence 99988 322333333333221100011111112467789999863 345566777773 44444555444
Q ss_pred ----HHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000978 1076 ----RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1128 (1203)
Q Consensus 1076 ----R~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~ 1128 (1203)
...+++.++.+.. ..+.....+++...+..|+...|..++|++.+.
T Consensus 304 R~~Di~~l~~~~l~~~~-------~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~ 353 (368)
T 3dzd_A 304 RGKDVILLAEYFLKKFA-------KEYKKNCFELSEETKEYLMKQEWKGNVRELKNL 353 (368)
T ss_dssp STTHHHHHHHHHHHHHH-------HHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH-------HHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHH
Confidence 4455555553311 000011123455555555555555555554433
No 160
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.46 E-value=3.4e-07 Score=122.54 Aligned_cols=76 Identities=28% Similarity=0.350 Sum_probs=58.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc----------------cccccccccHHHHHHHHHHHHhcCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 997 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se----------------L~s~~~G~~e~~I~~lF~~A~k~~Ps 997 (1203)
+-|++|||+|+|||+||-.++.+. |-....++... |.-......|..+..+...++..+++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 459999999999999987776443 77777777642 22234455688888888899999999
Q ss_pred eEEEccchhhccCCC
Q 000978 998 VIFVDEVDSMLGRRE 1012 (1203)
Q Consensus 998 ILfIDEID~L~~~r~ 1012 (1203)
+|+||-+..|.++..
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987654
No 161
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.46 E-value=2.8e-07 Score=96.43 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccH-HHHHHHHHHHHhcCCceEEEccchhh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e-~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
.+++|+||||||||+||+++++.+ +.+++.++++++...+..... ..+..++..... +.+|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 689999999999999999999988 778888888776443221100 001222333322 469999999754
No 162
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.45 E-value=3.8e-07 Score=101.92 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred cceeeeCCeEEEcCCCCc---ceeecCCCCccceEEEEEEe-------cCCceEEEEEEe-cCCceEEcCeeecCCCeeE
Q 000978 138 SNVPICASIFTVGSSRQC---NFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESI-GSKGLQVNGKNLKKNTSCE 206 (1203)
Q Consensus 138 ~~l~i~~~~~tvGr~~~c---d~~l~~~~~s~~~c~i~~~~-------~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~ 206 (1203)
..+.+....|+|||...+ +|.+.++.+|..|+.|..-. ..+...++|+|+ |.|||||||++|. +.+..
T Consensus 14 kr~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~-~~~~~ 92 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVG-QNGDS 92 (325)
T ss_dssp CCEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECC-TTCEE
T ss_pred eEEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECC-Cceee
Confidence 345566666999998763 36889999999999997632 112346899998 6799999999996 55556
Q ss_pred c-cCCCEEEEeecCCeEEEEE
Q 000978 207 L-RSGDEVVFGSLGNHAYIFQ 226 (1203)
Q Consensus 207 L-~~gDeI~f~~~~~~~yif~ 226 (1203)
| ..||+|.|+.... .|...
T Consensus 93 L~~dgd~I~fG~~~~-~fRl~ 112 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF-TINAY 112 (325)
T ss_dssp ECSSEEEEEETTCSS-CEEEE
T ss_pred ecCCCCEEEecCCcc-eEEEE
Confidence 6 4799999997655 34333
No 163
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.45 E-value=5.5e-06 Score=92.82 Aligned_cols=189 Identities=17% Similarity=0.159 Sum_probs=111.7
Q ss_pred ccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-----
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 973 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~----- 973 (1203)
.-..+.|-+...+.|.+.+.. + ..++|+||+|+|||+|++.+++.++ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 446788888888888876641 1 4799999999999999999999986 6666654321
Q ss_pred -------c---ccc-------------------------cccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCchhH
Q 000978 974 -------S---KWF-------------------------GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHE 1018 (1203)
Q Consensus 974 -------s---~~~-------------------------G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~ 1018 (1203)
. ..+ ......+..+...+....|.+|+|||++.+..... .. ..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~-~~ 149 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RG-GK 149 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TT-TH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cc-hh
Confidence 0 000 01112222233333333489999999998843100 00 11
Q ss_pred HHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcH---------HHHhcccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000978 1019 AMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE---------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1089 (1203)
Q Consensus 1019 al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~---------aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l 1089 (1203)
.....+..+. +.. .++.+|.|++....+.. .+..|+...+.+.+.+.++..+++...+...+.
T Consensus 150 ~~~~~L~~~~---~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 150 ELLALFAYAY---DSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp HHHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHH---Hhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 1122222222 211 24555555543211111 122355457889999999999999887765443
Q ss_pred C-CchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1090 S-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1090 ~-~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
. .+..+..+...+.|+. .-+..++..
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 3 3456778888998865 456555543
No 164
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.43 E-value=4.9e-08 Score=89.23 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 000978 1074 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIR 1153 (1203)
Q Consensus 1074 eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~~airel~~~~~~~~~~a~~e~~~~~~~~~~~~~r 1153 (1203)
++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.++++ ...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~--------------------------~~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK--------------------------NRY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT--------------------------TCS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------------------------ccC
Confidence 478999999998887778899999999999999999999999999998885 125
Q ss_pred cccHHHHHHHHHHhc-cccc
Q 000978 1154 PLNMDDFKYAHERVC-ASVS 1172 (1203)
Q Consensus 1154 ~Lt~eDf~~Al~~v~-pS~s 1172 (1203)
.|+++||..|++++. ++..
T Consensus 55 ~i~~~df~~Al~~v~~~~~~ 74 (82)
T 2dzn_B 55 VILQSDLEEAYATQVKTDNT 74 (82)
T ss_dssp EECHHHHHHHHHTTCC----
T ss_pred CcCHHHHHHHHHHHHcCcCC
Confidence 799999999999985 4443
No 165
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.42 E-value=6.5e-07 Score=99.11 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=57.0
Q ss_pred CccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEe
Q 000978 386 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 465 (1203)
Q Consensus 386 ~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~ 465 (1203)
++++.-.|+++=+ =.++.+..|..++.-|+++..+..-.+ -...++.|||+||+| .++++|||+||+.++.+++.+
T Consensus 6 ~~~l~~~l~~~i~-G~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 6 PREIVSELDQHII-GQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp HHHHHHHHHTTCC-SCHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTT--SSHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 3444444444211 127788888888877766655432111 123457899999999 999999999999999999999
Q ss_pred eccccc
Q 000978 466 DSHSLL 471 (1203)
Q Consensus 466 d~~~~~ 471 (1203)
+.+.+.
T Consensus 82 ~~~~~~ 87 (310)
T 1ofh_A 82 EATKFT 87 (310)
T ss_dssp EGGGGS
T ss_pred cchhcc
Confidence 886654
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=9.2e-07 Score=89.61 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC-----CcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG-----NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTK 716 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~-----~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~ 716 (1203)
.++.+++.+.. ..++.||||||+|.+... ..++.+.|...++. +++.+|++++..+...
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~------------ 165 (195)
T 1jbk_A 102 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQ------------ 165 (195)
T ss_dssp HHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHH------------
T ss_pred HHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHH------------
Confidence 45555554433 367999999999997642 46778888888865 7888999988664100
Q ss_pred cCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000978 717 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 772 (1203)
Q Consensus 717 ~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Il 772 (1203)
...++.+|.+||. .|.|.+|+.+++.++|
T Consensus 166 --------------------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 --------------------------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --------------------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --------------------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 0114677888995 7999999999998775
No 167
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.31 E-value=2.1e-06 Score=119.57 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=96.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
.++++.||+|||||++++++|+.+|.+++.++|.+-+. ...+..+|..+.... +.+++|||+++ ....
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc-----ChHH
Confidence 47999999999999999999999999999999987443 345577777766644 89999999977 3222
Q ss_pred hHHHHHHHHHHHHhh---------cCCcccCCccEEEEEecCC----CCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000978 1017 HEAMRKMKNEFMVNW---------DGLRTKDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1082 (1203)
Q Consensus 1017 ~~al~~il~eLL~~l---------dgl~~~~~~~VlVIaTTN~----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~ 1082 (1203)
..++...+..++..+ .|-...-...+.|++|.|+ ...|++++++|| +.+.+..|+.+...+|+-.
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHHH
Confidence 333333333222222 1111122356778899984 468999999999 6899999999888887643
No 168
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.29 E-value=3.9e-07 Score=103.37 Aligned_cols=112 Identities=17% Similarity=0.266 Sum_probs=67.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP 1014 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~--fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1014 (1203)
..+||+||||+|||+||.++|...+.+ |+.+...+.++.+....+..+..+++...+.. +||||+|+.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 458999999999999999999876544 55553244333333455666666766666654 99999999985433220
Q ss_pred ----chhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHH
Q 000978 1015 ----GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1057 (1203)
Q Consensus 1015 ----~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1057 (1203)
.....+++++..|..... ..++.+|+++| +...+++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k------~~gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAA------SRGCVVIASLN-PTSNDDK 241 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHH------HHTCEEEEECC-CSSCSSS
T ss_pred cccchHHHHHHHHHHHHHHHHh------hCCCEEEEEeC-Ccccchh
Confidence 012234444444443332 13467788888 4444443
No 169
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.27 E-value=1.4e-06 Score=100.42 Aligned_cols=67 Identities=31% Similarity=0.431 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhccCCccccc---------------ccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 402 ENTKNVLIAASYIHLKHKDHAK---------------YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~---------------~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+..|..|..+++.|++...... -..........|||+||+| +++++|||+||+.++.+++.+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 8899999999988876644210 0012344567899999999 9999999999999999999888
Q ss_pred cccc
Q 000978 467 SHSL 470 (1203)
Q Consensus 467 ~~~~ 470 (1203)
.+.+
T Consensus 105 ~~~~ 108 (376)
T 1um8_A 105 ATSL 108 (376)
T ss_dssp GGGC
T ss_pred chhh
Confidence 7443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.25 E-value=2.6e-06 Score=93.58 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 430 TVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 430 ~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
...+.|||+||+| +++++||+|+|++.+.+++.++.
T Consensus 62 ~~~~~vLl~G~~G--tGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPH--SGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTT--SSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeC
Confidence 3456899999999 99999999999999999888765
No 171
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.24 E-value=2.1e-06 Score=98.50 Aligned_cols=68 Identities=29% Similarity=0.429 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccccc
Q 000978 402 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 471 (1203)
Q Consensus 402 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~ 471 (1203)
+..+..|..++..|.+...............+.|||+|||| +++++||||||+.++.+++.++.+.+.
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 77888888888777665443333344555678999999999 999999999999999999999986543
No 172
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.21 E-value=5.5e-06 Score=100.61 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=31.5
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
..+-+||.||+| +++++|||+||+.++.++..++.
T Consensus 107 ~g~~vll~Gp~G--tGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPG--VGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSS--SSHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEe
Confidence 456799999999 99999999999999999887775
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.17 E-value=1.6e-05 Score=89.80 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=44.9
Q ss_pred cccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 392 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
+|++|-.. +..+..|...+-...+.. ...+.|||+||+| +++++||+++|+.++.+++.++.
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~G--tGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAG--LGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTT--SSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCC--CCHHHHHHHHHHHhCCCeEEecc
Confidence 57776444 777777766654332211 2344699999999 99999999999999988777665
No 174
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.15 E-value=1.3e-06 Score=92.84 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=77.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------C-CcEEEEeccccccccc----------cccHH--HHHHHHHHH--Hh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA--------G-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 993 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL--------g-~~fi~I~~seL~s~~~----------G~~e~--~I~~lF~~A--~k 993 (1203)
.-+|++|+||+|||++|.+++... | .+++..++.++....+ ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 468999999999999988865442 4 6666666665533221 11000 012223221 22
Q ss_pred cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCH
Q 000978 994 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDA 1073 (1203)
Q Consensus 994 ~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~ 1073 (1203)
...+||+|||++.+++.+..... . .+++ ..+... ....+-||.+|+.+..|+..+++|+...+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e--~-~rll----~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK--I-PENV----QWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC--C-CHHH----HGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccch--h-HHHH----HHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 34689999999999765421111 1 1222 222221 223456677777799999999999998888876544
Q ss_pred H
Q 000978 1074 P 1074 (1203)
Q Consensus 1074 e 1074 (1203)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.13 E-value=1.4e-06 Score=98.48 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=46.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 1007 (1203)
..+++|+||||||||+||.++|+++ +.+++.+++++++..+.... ...+..++.... ...|||||||+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3689999999999999999999866 47888888877654332211 111112222222 3579999999654
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.4e-05 Score=94.30 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=52.2
Q ss_pred cccccccccchhHHHHHHHHHhhcc-CC-cccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccc
Q 000978 392 SFENFPYYLSENTKNVLIAASYIHL-KH-KDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 469 (1203)
Q Consensus 392 sf~~fpyylse~tk~~L~~~~~~hL-~~-~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~ 469 (1203)
+|+++-.. +..+..|....-... .+ ..+.+.+.+-....+.|||+||+| +++++||+|||++++..++-++.+.
T Consensus 37 ~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 46665433 666666666543211 11 122233333334568999999999 9999999999999999999998876
Q ss_pred ccC
Q 000978 470 LLG 472 (1203)
Q Consensus 470 ~~g 472 (1203)
+.+
T Consensus 113 ~~~ 115 (516)
T 1sxj_A 113 VRS 115 (516)
T ss_dssp CCC
T ss_pred cch
Confidence 654
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=1.2e-05 Score=90.24 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
.+.||||||+|.+-+ .+..+.|...|+..++++.+|+++|..+.
T Consensus 105 ~~~vliiDEi~~l~~--~~~~~~L~~~le~~~~~~~iI~~~n~~~~---------------------------------- 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL--AESQRHLRSFMEAYSSNCSIIITANNIDG---------------------------------- 148 (324)
T ss_dssp CEEEEEEESCCCGGG--HHHHHHHHHHHHHHGGGCEEEEEESSGGG----------------------------------
T ss_pred CCeEEEEECCcccCc--HHHHHHHHHHHHhCCCCcEEEEEeCCccc----------------------------------
Confidence 567999999998642 33455677777777788999999886642
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
++++|.+|| ..|.|++|+.+++.+|++..+..
T Consensus 149 ---------l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 149 ---------IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp ---------SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ---------cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH
Confidence 344577788 68999999999999888765543
No 178
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=1.1e-05 Score=81.75 Aligned_cols=80 Identities=18% Similarity=0.384 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 715 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~------~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~ 715 (1203)
.+..+++.+... .+|.||||||+|.+.. +..++.+.|+..++. +++++|++++..+...
T Consensus 102 ~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~----------- 166 (187)
T 2p65_A 102 RLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQ----------- 166 (187)
T ss_dssp HHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHH-----------
T ss_pred HHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHH-----------
Confidence 455566655541 4789999999999862 236778888888865 7899999999764100
Q ss_pred ccCCchhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCC
Q 000978 716 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQ 764 (1203)
Q Consensus 716 ~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd 764 (1203)
...++.+|.+||. .|.|.+|+
T Consensus 167 ---------------------------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 167 ---------------------------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp ---------------------------HTTTCHHHHHHEE-EEECCSCC
T ss_pred ---------------------------HHhccHHHHHhcC-cccCCCCC
Confidence 0114778889995 69999885
No 179
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.08 E-value=6.7e-06 Score=80.54 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=64.9
Q ss_pred CCcceeeeCCeEEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEecCCceEEcCeeecCCCeeEccCCCEEE
Q 000978 136 QNSNVPICASIFTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVV 214 (1203)
Q Consensus 136 ~~~~l~i~~~~~tvGr~~-~cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~~~L~~gDeI~ 214 (1203)
..-.+++....|+||... .|||+|.|..+|..||.|.....+ ++|. =|.|||||||+.+.-+. .|..|+.|.
T Consensus 15 ~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt~vdG~~v~~~~--~L~~g~~l~ 87 (123)
T 4a0e_A 15 RGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPLLQEGLPVPLGT--LLRAGSCLE 87 (123)
T ss_dssp TTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCCEETTEECCTTC--BCCTTSCEE
T ss_pred CCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCEEECCEEccccc--ccCCCCEEE
Confidence 667899999999999999 999999999999999999875433 5665 77899999999987765 899999988
Q ss_pred Eeec
Q 000978 215 FGSL 218 (1203)
Q Consensus 215 f~~~ 218 (1203)
++..
T Consensus 88 lG~~ 91 (123)
T 4a0e_A 88 VGFL 91 (123)
T ss_dssp ETTE
T ss_pred EccE
Confidence 7543
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.98 E-value=1.7e-05 Score=84.60 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi 965 (1203)
+++||+||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865543
No 181
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.93 E-value=0.00015 Score=74.90 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
..+.||||||+|.+-. +..+.|...|+....++++|++++..+.
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~~~~~~~--------------------------------- 144 (226)
T 2chg_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCNYVSR--------------------------------- 144 (226)
T ss_dssp CSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEEESCGGG---------------------------------
T ss_pred cCceEEEEeChhhcCH---HHHHHHHHHHHhcCCCCeEEEEeCChhh---------------------------------
Confidence 6789999999998543 3455677777777788888888875431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
++++|.+||. .+.+.+|+.++...++...+.
T Consensus 145 ----------~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 145 ----------IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp ----------SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----------cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHH
Confidence 3456777885 899999999999988886553
No 182
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.86 E-value=3.4e-05 Score=108.38 Aligned_cols=140 Identities=20% Similarity=0.322 Sum_probs=89.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccccccccHHHHHHHHHHH----Hh------------cCCceE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVI 999 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k------------~~PsIL 999 (1203)
++|||+||||||||+++..+...+ +.+++.++++.-.. ...+...++.. .+ ....||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998776554444 77788888866432 23333333321 00 112499
Q ss_pred EEccchhhccCCCCCchhHHHHHHHHHHHHhh---c--CCcccCCccEEEEEecCCC-----CCCcHHHHhcccccccCC
Q 000978 1000 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW---D--GLRTKDTERILVLAATNRP-----FDLDEAVIRRLPRRLMVN 1069 (1203)
Q Consensus 1000 fIDEID~L~~~r~~~~~~~al~~il~eLL~~l---d--gl~~~~~~~VlVIaTTN~p-----~~Ld~aLlrRFd~~I~v~ 1069 (1203)
|||||+.- ..+.-+.+.. ..++.+++..- + ......-.++.+|||+|.+ ..|+++++||| .++.++
T Consensus 1379 FiDDiNmp--~~D~yGtQ~~-ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~ 1454 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQRV-ITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVD 1454 (3245)
T ss_dssp EETTTTCC--CCCTTSCCHH-HHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECC
T ss_pred EecccCCC--CccccccccH-HHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeC
Confidence 99999842 3222222222 23444444321 1 1111122578899999987 47999999999 569999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 000978 1070 LPDAPNRAKILQVILAK 1086 (1203)
Q Consensus 1070 ~Pd~eeR~eIL~~~l~~ 1086 (1203)
.|+.++...|+..++..
T Consensus 1455 ~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1455 FPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998877653
No 183
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.81 E-value=7.6e-05 Score=104.99 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=107.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1016 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1016 (1203)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+..+|.-+... .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 36789999999999999999999999999999987432 34566777766654 478899999987 2221
Q ss_pred hHHHHHHHHHHHHh---------hc-CCcccCCccEEEEEecCC----CCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000978 1017 HEAMRKMKNEFMVN---------WD-GLRTKDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1082 (1203)
Q Consensus 1017 ~~al~~il~eLL~~---------ld-gl~~~~~~~VlVIaTTN~----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~ 1082 (1203)
-.++...+..+... +. |-...-+..+.|++|.|. ...|++.+..|| +.|.+..||.+...+|+-.
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 12221211111111 11 211222356788899984 468999999999 6799999999887777533
Q ss_pred HHhhCCCCCchhH-------HHHHHH------cCCCcHHHHHHHHHHHH
Q 000978 1083 ILAKEDLSPDVDF-------DAIANM------TDGYSGSDLKNLCVTAA 1118 (1203)
Q Consensus 1083 ~l~~~~l~~d~dl-------~~LA~~------T~G~Sg~DL~~L~~~Aa 1118 (1203)
..++.....+ -.|+.. ...|.-+.|+.++..|.
T Consensus 752 ---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 752 ---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp ---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred ---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 3343322111 112211 12456678888877765
No 184
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.81 E-value=3.2e-05 Score=85.72 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=67.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhccCCCCCc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG 1015 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~ 1015 (1203)
.++|||+||||||||++|++||+.++. +-.++... . .|-........|+++||.... . .
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~-----------~f~l~~~~~k~i~l~Ee~~~~-----~-d 162 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---E-----------NFPFNDCVDKMVIWWEEGKMT-----A-K 162 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---S-----------SCTTGGGSSCSEEEECSCCEE-----T-T
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---c-----------ccccccccccEEEEeccccch-----h-H
Confidence 468999999999999999999998654 22222211 0 011111122356666666533 1 1
Q ss_pred hhHHHHHHHHHHHHhhcCCcc--cCCccEEEEEecCC-C----------CCCcHHHHhcccccccCC--------CCCHH
Q 000978 1016 EHEAMRKMKNEFMVNWDGLRT--KDTERILVLAATNR-P----------FDLDEAVIRRLPRRLMVN--------LPDAP 1074 (1203)
Q Consensus 1016 ~~~al~~il~eLL~~ldgl~~--~~~~~VlVIaTTN~-p----------~~Ld~aLlrRFd~~I~v~--------~Pd~e 1074 (1203)
....++.++.---..++.... ..-.+..+|.|||. + +...+.|.+|+ ..+.|. +.+.+
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~lt~~ 241 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGKVTKQ 241 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCCCCHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCCCCHH
Confidence 223334433100001111100 01145566777775 2 24557888875 444554 67788
Q ss_pred HHHHHHHHH
Q 000978 1075 NRAKILQVI 1083 (1203)
Q Consensus 1075 eR~eIL~~~ 1083 (1203)
+...+|+..
T Consensus 242 ~~~~f~~w~ 250 (267)
T 1u0j_A 242 EVKDFFRWA 250 (267)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888844
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.81 E-value=0.00014 Score=80.79 Aligned_cols=107 Identities=9% Similarity=0.002 Sum_probs=61.8
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCC-----------CcEEEEeeeccCCC-ccccCCCCCccccccCCchhh
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLP-----------DKVIVIGSHTHTDN-RKEKSHPGGLLFTKFGSNQTA 723 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~-----------g~V~vIGst~~~d~-~~~~~~~~~~~l~~~gr~~~~ 723 (1203)
....||||||++++ ..+..+.|-..|+... .++++|+++|.... +.... +. -..+.. -..
T Consensus 118 ~~~~vl~lDEi~~l---~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~--~~--~~~~~~-l~~ 189 (311)
T 4fcw_A 118 RPYSVILFDAIEKA---HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGL--QK--GWPYER-IRD 189 (311)
T ss_dssp CSSEEEEEETGGGS---CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTT--TS--CCCSST-HHH
T ss_pred CCCeEEEEeChhhc---CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhh--cc--cccHHH-HHH
Confidence 45679999999985 3345555656664422 27779999987310 00000 00 000000 000
Q ss_pred hccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhh
Q 000978 724 LLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETL 783 (1203)
Q Consensus 724 l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~~~e~l 783 (1203)
+++.++ ....+.+|..||+..+.+.+|+.+++..|++..+.+..+.+
T Consensus 190 ~~~~~~-------------~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 190 EVFKVL-------------QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp HTHHHH-------------HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHH-------------HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000 11245678889999999999999999999998877655443
No 186
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.79 E-value=0.00014 Score=81.20 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=29.8
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
..+.|||+||+| +++++||+++|+.++.+++.++.
T Consensus 37 ~~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~~ 71 (324)
T 1hqc_A 37 PLEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTSG 71 (324)
T ss_dssp CCCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEECT
T ss_pred CCCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEec
Confidence 346899999999 99999999999999877765543
No 187
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.78 E-value=0.00015 Score=81.74 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=30.0
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
+.|||+|||| +++++||||||+.++.++..+..
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEec
Confidence 4899999999 99999999999999998877764
No 188
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.75 E-value=0.00033 Score=79.45 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC--CcchhhhHHHHHhcC--CCcEEEEeeeccCCCccccCCCCCcccccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDSYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKSHPGGLLFTKF 717 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~--~~~~~~~lk~~L~~l--~g~V~vIGst~~~d~~~~~~~~~~~~l~~~ 717 (1203)
+++.+++.+.. ...|+||||||+|.+... ..+....+...+... +.++.+||+++..+..
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~-------------- 180 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFV-------------- 180 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTS--------------
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchH--------------
Confidence 46667766654 345999999999997654 344443333333333 5789999999977420
Q ss_pred CCchhhhccccCCCccccccccCCCchHHHHHHhhhCCC-eEEEeCCCHHHHHHHHHHhhhh
Q 000978 718 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPN-KVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 718 gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~-~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+ ++..+.+||.. .+.+++|+.++...+++..+..
T Consensus 181 ----------------~~----------l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 181 ----------------EN----------LEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp ----------------SS----------SCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred ----------------hh----------hCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 01 35566777876 8899999999999999977643
No 189
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.72 E-value=0.00036 Score=79.11 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=96.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEeccccccccccccHHHHHHHHHHHH----hcCCceEEEccchh-h
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDS-M 1007 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~-~fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~-L 1007 (1203)
+.+||+||+|.||++.++++++.+ ++ ++..+... + ...++.+++.+. .....||+|||++. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 579999999999999999998876 33 22222111 1 112344444443 23467999999987 6
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC-----CCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000978 1008 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1082 (1203)
Q Consensus 1008 ~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL~~ 1082 (1203)
+.. ..+.|+..++..+ ...++|+++++. ...+-+++.+|+ .++.+..++..+....++.
T Consensus 90 -----~~~-------~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 90 -----NAA-------INEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp -----CTT-------HHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHH
T ss_pred -----ChH-------HHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHH
Confidence 111 2233444444431 233444444432 234567888887 6788999999999999999
Q ss_pred HHhhCCCC-CchhHHHHHHHcCCCcHHHHHHHHHH
Q 000978 1083 ILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1116 (1203)
Q Consensus 1083 ~l~~~~l~-~d~dl~~LA~~T~G~Sg~DL~~L~~~ 1116 (1203)
.+...++. ++..+..|+..+.| ..+++.+.++.
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elek 187 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALER 187 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHH
Confidence 99888765 44557778888776 33344444333
No 190
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.72 E-value=0.00011 Score=87.28 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=55.0
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
..+.||||||||.+-...+ +.|-..|+. +.|++||+||....
T Consensus 105 ~~~~iLfIDEI~~l~~~~q---~~LL~~le~--~~v~lI~att~n~~--------------------------------- 146 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQ---DAFLPHIED--GTITFIGATTENPS--------------------------------- 146 (447)
T ss_dssp TCCEEEEEETTTCC---------CCHHHHHT--TSCEEEEEESSCGG---------------------------------
T ss_pred CCCcEEEEeChhhhCHHHH---HHHHHHHhc--CceEEEecCCCCcc---------------------------------
Confidence 5688999999998644322 335566665 89999999985431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++++|..|+ ..+.+.+|+.++...+++..+.+
T Consensus 147 --------~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 147 --------FELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp --------GSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHC
T ss_pred --------cccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHH
Confidence 11467788888 68999999999999999877654
No 191
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.71 E-value=6e-05 Score=102.34 Aligned_cols=77 Identities=26% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----cccc------------cccHHHHHHHHHHHHh
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKWF------------GEGEKYVKAVFSLASK 993 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~----s~~~------------G~~e~~I~~lF~~A~k 993 (1203)
..+..+++|+||||||||+||.+++.+. |..++.++..+.+ .... ...+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 3455789999999999999999998776 6677777766432 1112 2446777888888888
Q ss_pred cCCceEEEccchhhcc
Q 000978 994 IAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 994 ~~PsILfIDEID~L~~ 1009 (1203)
..|++||||+++.+.+
T Consensus 1504 ~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred CCCCEEEEcChhHhcc
Confidence 9999999999998875
No 192
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00035 Score=79.33 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~ 721 (1203)
.++.+|+-+.. .+..++||||||+|.+. ++.-+|+.+. ....-.++++|||..|..|..+.
T Consensus 118 ~L~~~f~~~~~-~~~~~~ii~lDE~d~l~-~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d~~~~---------------- 178 (318)
T 3te6_A 118 ALNFYITNVPK-AKKRKTLILIQNPENLL-SEKILQYFEK-WISSKNSKLSIICVGGHNVTIRE---------------- 178 (318)
T ss_dssp HHHHHHHHSCG-GGSCEEEEEEECCSSSC-CTHHHHHHHH-HHHCSSCCEEEEEECCSSCCCHH----------------
T ss_pred HHHHHHHHhhh-ccCCceEEEEecHHHhh-cchHHHHHHh-cccccCCcEEEEEEecCcccchh----------------
Confidence 56667765421 34689999999999987 5444444443 22233578999999888763110
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCC-CeEEEeCCCHHHHHHHHHHhhhh
Q 000978 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 722 ~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp-~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
.+++++..||. ..|.+++.+.++...|++..+..
T Consensus 179 -----------------------~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 179 -----------------------QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -----------------------HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----------------------hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 13445666775 67999999999999999977754
No 193
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.62 E-value=0.00025 Score=73.68 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFI 965 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi 965 (1203)
.+.|.||+|+|||||++.|+..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5889999999999999999999865443
No 194
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.61 E-value=0.0006 Score=77.71 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCC-cchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSN 720 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~-~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~ 720 (1203)
+++.+++.+.. ..+ ||||||+|.+.... .+. +...|.+...++.||++++..+.
T Consensus 122 ~~~~l~~~l~~---~~~-vlilDEi~~l~~~~~~~~---~l~~l~~~~~~~~iI~~t~~~~~------------------ 176 (384)
T 2qby_B 122 YIDKIKNGTRN---IRA-IIYLDEVDTLVKRRGGDI---VLYQLLRSDANISVIMISNDINV------------------ 176 (384)
T ss_dssp HHHHHHHHHSS---SCE-EEEEETTHHHHHSTTSHH---HHHHHHTSSSCEEEEEECSSTTT------------------
T ss_pred HHHHHHHHhcc---CCC-EEEEECHHHhccCCCCce---eHHHHhcCCcceEEEEEECCCch------------------
Confidence 56677776654 455 99999999976542 333 12223223378999999887641
Q ss_pred hhhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 721 QTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 721 ~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
..+ ++.++.+||...+.+++++.++...+++..+.
T Consensus 177 ------------~~~----------l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 177 ------------RDY----------MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp ------------TTT----------SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ------------Hhh----------hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 011 35667778878999999999999999997664
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.56 E-value=0.00017 Score=82.06 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=56.7
Q ss_pred CeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 000978 658 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 737 (1203)
Q Consensus 658 p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~ 737 (1203)
|.||||||+|.+- .+..+.|...|+....++++||++....- .+. .-
T Consensus 190 ~~vl~IDEi~~l~---~~~~~~L~~~le~~~~~~~ii~t~~~~~~--------------i~~--------t~-------- 236 (368)
T 3uk6_A 190 PGVLFIDEVHMLD---IESFSFLNRALESDMAPVLIMATNRGITR--------------IRG--------TS-------- 236 (368)
T ss_dssp BCEEEEESGGGSB---HHHHHHHHHHTTCTTCCEEEEEESCSEEE--------------CBT--------SS--------
T ss_pred CceEEEhhccccC---hHHHHHHHHHhhCcCCCeeeeecccceee--------------eec--------cC--------
Confidence 7899999999853 45566677777777778888777532100 000 00
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 738 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 738 ~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
......++.+|.+|| ..|.+++|+.+++..+|+..+..
T Consensus 237 --~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 237 --YQSPHGIPIDLLDRL-LIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp --CEEETTCCHHHHTTE-EEEEECCCCHHHHHHHHHHHHHH
T ss_pred --CCCcccCCHHHHhhc-cEEEecCCCHHHHHHHHHHHHHH
Confidence 000012567888899 55999999999999999976644
No 196
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.46 E-value=0.00016 Score=78.99 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=53.9
Q ss_pred ceeeeCCeEEEcCCCCcceeecCCCCccceEEEEEEecC--CceEEEEEEec-CCc-eEEcCeeecCCCeeEcc-CCCEE
Q 000978 139 NVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSE--GSAVAMVESIG-SKG-LQVNGKNLKKNTSCELR-SGDEV 213 (1203)
Q Consensus 139 ~l~i~~~~~tvGr~~~cd~~l~~~~~s~~~c~i~~~~~~--~~~~~~led~s-~nG-t~VNg~~~~k~~~~~L~-~gDeI 213 (1203)
..++.+..+||||+..|||+|.+. . + -.+.+-..+ +. .+|+|++ +|| |||||+++... +.|+ .||+|
T Consensus 86 ~y~~~~~~itIG~~~~~dI~l~~~-~-~--~~~~~~~~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I 157 (238)
T 1wv3_A 86 AYPSIQDTMTIGPNAYDDMVIQSL-M-N--AIIIKDFQSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHI 157 (238)
T ss_dssp ECCSSCSEEEEESSTTSSEECTTC-S-S--CEEEECGGGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEE
T ss_pred EEecCCceEEEeCCCCCeEEeCCC-e-e--EEEEecccCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEE
Confidence 344455599999999999999988 3 3 233322111 23 4799997 799 59999999543 4799 99999
Q ss_pred EEeecCCeEEEEE
Q 000978 214 VFGSLGNHAYIFQ 226 (1203)
Q Consensus 214 ~f~~~~~~~yif~ 226 (1203)
.| |+..+.|+
T Consensus 158 ~i---g~~~~~~~ 167 (238)
T 1wv3_A 158 YV---EGIWLEVQ 167 (238)
T ss_dssp EE---TTEEEEEC
T ss_pred EE---CCEEEEEE
Confidence 98 45444444
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.44 E-value=0.0019 Score=67.27 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=56.4
Q ss_pred cCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 000978 655 RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 734 (1203)
Q Consensus 655 ~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~ 734 (1203)
..+|.||||||+|.+ ..+..+.|...|+..+.++++|.+++..+.
T Consensus 124 ~~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~-------------------------------- 168 (250)
T 1njg_A 124 RGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTDPQK-------------------------------- 168 (250)
T ss_dssp SSSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEESCGGG--------------------------------
T ss_pred cCCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeCChHh--------------------------------
Confidence 356899999999985 234556677777777788888888876431
Q ss_pred cccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 735 RLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 735 r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
++.++.+|+ ..+.+++|+.++..+++...+.
T Consensus 169 -----------~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 169 -----------LPVTILSRC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp -----------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH
Confidence 234455566 7899999999999999886654
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.41 E-value=0.00023 Score=79.97 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccc
Q 000978 431 VNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 470 (1203)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~ 470 (1203)
..+.|||+||+| +++++||+|+|+++ +.+++.++...+
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 346799999999 99999999999999 888888876433
No 199
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.0012 Score=73.20 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=56.0
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
..+.||+|||+|.+-. +..+.|...|+..++++++|.+++..+.
T Consensus 106 ~~~~viiiDe~~~l~~---~~~~~L~~~le~~~~~~~~il~~~~~~~--------------------------------- 149 (323)
T 1sxj_B 106 GKHKIVILDEADSMTA---GAQQALRRTMELYSNSTRFAFACNQSNK--------------------------------- 149 (323)
T ss_dssp TCCEEEEEESGGGSCH---HHHHTTHHHHHHTTTTEEEEEEESCGGG---------------------------------
T ss_pred CCceEEEEECcccCCH---HHHHHHHHHHhccCCCceEEEEeCChhh---------------------------------
Confidence 3488999999998533 3455677788877788888888765421
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+.+.|..|+ ..+.+.+|+.++...++...+.
T Consensus 150 ----------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 150 ----------IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp ----------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ----------chhHHHhhc-eEEeecCCCHHHHHHHHHHHHH
Confidence 345667777 5999999999999998886553
No 200
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=0.0011 Score=69.88 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=23.8
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFG 459 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~ 459 (1203)
.+.|||+||+| .++++||+++|++++
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 46899999999 999999999998875
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.33 E-value=0.00019 Score=84.90 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=55.1
Q ss_pred CCeEEEEcchhhhhc---CCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 000978 657 CPFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 733 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~---~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~ 733 (1203)
.+.||||||++.+.. .+.++++.+....+ .|..+||++++.+.. +
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~------------------------------l 241 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQK------------------------------L 241 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSCGGG------------------------------C
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCCHHH------------------------------H
Confidence 688999999998764 23455555555443 367788877654321 0
Q ss_pred ccccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhh
Q 000978 734 GRLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 734 ~r~~~~~~~~~~~d~~l~rrFp--~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
.. ++++|..||. ..+.|.+|+.++|..||+..+.
T Consensus 242 ~~----------l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 242 SE----------FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp SS----------CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 11 3556777775 6899999999999999987664
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.0037 Score=70.57 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCC-cchhhhHHHHHhcC-CCcEEEEeeeccCCCccccCCCCCccccccCC
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 719 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~-~~~~~~lk~~L~~l-~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr 719 (1203)
.++.+++.+.. ...|.||+|||++.+.... .+....|...++.+ ..++.+|++++..+.
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~----------------- 175 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF----------------- 175 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG-----------------
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh-----------------
Confidence 46667776665 2349999999999987653 56666666666543 458999999886541
Q ss_pred chhhhccccCCCccccccccCCCchHHHHHHhhhCC-CeEEEeCCCHHHHHHHHHHhhh
Q 000978 720 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 720 ~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp-~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
.+ + ++..+.+||. ..+.+++++.++..++++..+.
T Consensus 176 -----~~--------~----------~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 176 -----VD--------L----------LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp -----GG--------G----------CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred -----Hh--------h----------hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 00 0 2233445564 4899999999999999986653
No 203
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.29 E-value=0.00036 Score=77.18 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
..+.||+|||+|.+-. +..+.|...|+..+.++++|.+++..+.
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~L~~~le~~~~~~~~i~~~~~~~~--------------------------------- 144 (319)
T 2chq_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCNYVSR--------------------------------- 144 (319)
T ss_dssp CCCEEEEEETGGGSCH---HHHHTTGGGTSSSSSSEEEEEEESCGGG---------------------------------
T ss_pred CCceEEEEeCCCcCCH---HHHHHHHHHHHhcCCCCeEEEEeCChhh---------------------------------
Confidence 4588999999998532 3445566667777788999998875431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
+.++|..|+ ..|.+.+|+.++...++...+.
T Consensus 145 ----------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 145 ----------IIEPIQSRC-AVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp ----------SCHHHHTTC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ----------cchHHHhhC-eEEEecCCCHHHHHHHHHHHHH
Confidence 356677788 5999999999999888876553
No 204
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.29 E-value=0.00078 Score=75.84 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=37.9
Q ss_pred cccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHHHhHhCC
Q 000978 390 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 460 (1203)
Q Consensus 390 ~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a 460 (1203)
..+|++|... ++.+..|..++..+ ..+.|||+||+| +++++|||+||+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 3578886544 66776665554421 123499999999 9999999999999874
No 205
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.12 E-value=0.0019 Score=67.83 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cc----------------------------
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF---------------------------- 977 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~------~~---------------------------- 977 (1203)
+..-++|+||+|+|||+|++.++..+ +..++.++....... ..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSL 101 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeee
Confidence 33568999999999999999998654 556666654321000 00
Q ss_pred --cccHHHHHHHHHHHHhcCCc--eEEEccchhhcc
Q 000978 978 --GEGEKYVKAVFSLASKIAPS--VIFVDEVDSMLG 1009 (1203)
Q Consensus 978 --G~~e~~I~~lF~~A~k~~Ps--ILfIDEID~L~~ 1009 (1203)
.........+...+....|. +|+|||+..++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 01123334444555566888 999999998753
No 206
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=0.0018 Score=71.80 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=55.2
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
..+.||+|||+|.+- .+..+.|...|+..+.++.+|.+++..+.
T Consensus 109 ~~~~vliiDe~~~l~---~~~~~~L~~~le~~~~~~~~i~~~~~~~~--------------------------------- 152 (327)
T 1iqp_A 109 ASFKIIFLDEADALT---QDAQQALRRTMEMFSSNVRFILSCNYSSK--------------------------------- 152 (327)
T ss_dssp CSCEEEEEETGGGSC---HHHHHHHHHHHHHTTTTEEEEEEESCGGG---------------------------------
T ss_pred CCCeEEEEeCCCcCC---HHHHHHHHHHHHhcCCCCeEEEEeCCccc---------------------------------
Confidence 467899999999853 34556677778877788888888775431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
+.++|..|+ ..+.+.+|+.++...++...+
T Consensus 153 ----------l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 153 ----------IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp ----------SCHHHHHTE-EEEECCCCCHHHHHHHHHHHH
T ss_pred ----------cCHHHHhhC-cEEEecCCCHHHHHHHHHHHH
Confidence 345677778 489999999998888887554
No 207
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.07 E-value=0.00023 Score=82.68 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCceEEEccchhhcc-CCC
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG-RRE 1012 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~-~r~ 1012 (1203)
.+...++|+||+|+|||+|+++|+..++..++.+..+.- . ....+. .-.+..++++||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHHHhh
Confidence 344689999999999999999999998776655332210 0 001111 222446789999998764 221
Q ss_pred CCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccC
Q 000978 1013 NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMV 1068 (1203)
Q Consensus 1013 ~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v 1068 (1203)
-....... ....+...+++ .+.|++++|+++.+ +++++ |++..+.+
T Consensus 235 l~~~~~~~--~~~~l~~~ldG-------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 235 LPSGQGIN--NLDNLRDYLDG-------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCCSHHH--HHHTTHHHHHC-------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred ccccCcch--HHHHHHHHhcC-------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 11101100 11223333444 24567778888877 44544 55444444
No 208
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.07 E-value=0.0039 Score=70.59 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhc-cCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 000978 643 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1203)
Q Consensus 643 i~~L~ev~~~~~-~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~ 721 (1203)
++.+++.+.... ..++.||+|||+|.+ ..+..+.|...|+..++++++|++++..+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~vliiDe~~~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~------------------- 161 (373)
T 1jr3_A 104 TRDLLDNVQYAPARGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTDPQK------------------- 161 (373)
T ss_dssp HHHHHHHTTSCCSSSSSEEEEEECGGGS---CHHHHHHHHHHHHSCCSSEEEEEEESCGGG-------------------
T ss_pred HHHHHHHHhhccccCCeEEEEEECcchh---cHHHHHHHHHHHhcCCCceEEEEEeCChHh-------------------
Confidence 344444443321 246799999999985 234566777888888889999999875431
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 722 ~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.+.|..|+ ..+.+.+|+.++...+++..+.+
T Consensus 162 ------------------------l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 162 ------------------------LPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp ------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------------------CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 234566667 79999999999999888866543
No 209
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.00 E-value=0.0022 Score=74.00 Aligned_cols=76 Identities=25% Similarity=0.258 Sum_probs=51.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cccccHHHHHHHHHHHHhc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKI 994 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~----------------~~G~~e~~I~~lF~~A~k~ 994 (1203)
.+..-++|+||||+|||+|+..++..+ +..+++++....... .....+..+..+....+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 343569999999999999999998775 677888887543110 0111233333333344456
Q ss_pred CCceEEEccchhhcc
Q 000978 995 APSVIFVDEVDSMLG 1009 (1203)
Q Consensus 995 ~PsILfIDEID~L~~ 1009 (1203)
.+.+|+||.+..+++
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 789999999998874
No 210
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0051 Score=69.13 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
.+-||||||++.+-. +..+.|...|+..+.++.+|.+++..+.
T Consensus 133 ~~~vliiDE~~~l~~---~~~~~Ll~~le~~~~~~~~il~~~~~~~---------------------------------- 175 (353)
T 1sxj_D 133 PYKIIILDEADSMTA---DAQSALRRTMETYSGVTRFCLICNYVTR---------------------------------- 175 (353)
T ss_dssp SCEEEEETTGGGSCH---HHHHHHHHHHHHTTTTEEEEEEESCGGG----------------------------------
T ss_pred CceEEEEECCCccCH---HHHHHHHHHHHhcCCCceEEEEeCchhh----------------------------------
Confidence 557999999998543 3345666777777777766666665431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
++++|.+|+ ..+.+.+|..++...+++..+
T Consensus 176 ---------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 176 ---------IIDPLASQC-SKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp ---------SCHHHHHHS-EEEECCCCCHHHHHHHHHHHH
T ss_pred ---------CcchhhccC-ceEEeCCCCHHHHHHHHHHHH
Confidence 356677888 489999999999999888654
No 211
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.97 E-value=0.0052 Score=66.54 Aligned_cols=159 Identities=21% Similarity=0.272 Sum_probs=82.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc--------cccccc----------cc--cHHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS--------ITSKWF----------GE--GEKYVKAVFSLASK 993 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se--------L~s~~~----------G~--~e~~I~~lF~~A~k 993 (1203)
..|++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 469999999999999999998876 77766555521 111100 00 112223322 2
Q ss_pred cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC------------------CCCCc
Q 000978 994 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------------PFDLD 1055 (1203)
Q Consensus 994 ~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~------------------p~~Ld 1055 (1203)
..|.+|+|||+-..-... . ........+ ..+ + ...+=|++|+|. .+.++
T Consensus 83 ~~pdlvIVDElG~~~~~~-~-r~~~~~qDV-~~~---l-------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG-S-RHTKRWQDI-QEL---L-------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCTT-C-SSSBHHHHH-HHH---H-------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCccc-c-hhHHHHHHH-HHH---H-------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 468999999987541110 0 011111122 111 1 133456677762 24566
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000978 1056 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAH 1119 (1203)
Q Consensus 1056 ~aLlrRFd~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~DL~~L~~~Aa~ 1119 (1203)
+.++.+.+.+..++.|..+- ++.+....-+.++..-..+... |+...|..|-.-|..
T Consensus 150 d~~~~~a~~v~lvD~~p~~l----~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~ 206 (228)
T 2r8r_A 150 DWVLQEAFDLVLIDLPPREL----LERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQ 206 (228)
T ss_dssp HHHHHTCSEEEEBCCCHHHH----HHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred cHHHhhCCeEEEecCCHHHH----HHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHH
Confidence 77777777777777765542 2223222222233222333333 566666666444443
No 212
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.96 E-value=0.0027 Score=73.46 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----c------------cccHHHHHHHHHHHHhcC
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKIA 995 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~----~------------G~~e~~I~~lF~~A~k~~ 995 (1203)
+..-++|+||||+|||+||..+|..+ +.+++.++...-.... . ...+..+..+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 34569999999999999999998765 6788888875422111 1 112333333333444567
Q ss_pred CceEEEccchhhcc
Q 000978 996 PSVIFVDEVDSMLG 1009 (1203)
Q Consensus 996 PsILfIDEID~L~~ 1009 (1203)
+.+|+||.+..|..
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 89999999999974
No 213
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.95 E-value=0.0077 Score=73.02 Aligned_cols=174 Identities=13% Similarity=0.072 Sum_probs=95.9
Q ss_pred cccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----hCC--cEEEEecccc
Q 000978 900 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----AGA--NFINISMSSI 972 (1203)
Q Consensus 900 ~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e-----Lg~--~fi~I~~seL 972 (1203)
...++|-+...+.|.+.+... ....+-|+|+|++|+|||+||..+++. -.+ .++.++....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 346889999999888877531 112356999999999999999999742 122 2444443221
Q ss_pred -----ccc------ccc----------cc-HHHHHHHHHHHHh-cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHH
Q 000978 973 -----TSK------WFG----------EG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1029 (1203)
Q Consensus 973 -----~s~------~~G----------~~-e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~ 1029 (1203)
... ..+ .. +.....+...... ..|.+|+||+++.. . .+ .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~----~l----~ 252 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W----VL----K 252 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H----HH----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H----HH----H
Confidence 000 000 01 1222222222222 26799999999742 1 11 1
Q ss_pred hhcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccC---CCCCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCc
Q 000978 1030 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV---NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 1106 (1203)
Q Consensus 1030 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v---~~Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~S 1106 (1203)
. + ..+..||.||........ + . ...+.+ ...+.++-.++|...+.............|++.+.|.
T Consensus 253 ~---l----~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~- 320 (591)
T 1z6t_A 253 A---F----DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS- 320 (591)
T ss_dssp T---T----CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-
T ss_pred H---h----cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-
Confidence 1 1 123456667764321110 0 0 122233 4678899999998876432111234568899999885
Q ss_pred HHHHHHHHH
Q 000978 1107 GSDLKNLCV 1115 (1203)
Q Consensus 1107 g~DL~~L~~ 1115 (1203)
+-.|..+..
T Consensus 321 PLal~~~a~ 329 (591)
T 1z6t_A 321 PLVVSLIGA 329 (591)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 445554443
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.91 E-value=0.0062 Score=66.17 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC---CeEEEeecccc
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFG---AKLLIFDSHSL 470 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~---a~ll~~d~~~~ 470 (1203)
..-|||+||+| .++++||||||++.. .+++.++.+.+
T Consensus 29 ~~~vll~G~~G--tGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERG--TGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTT--SCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCC--CcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 36899999999 999999999999985 67888887665
No 215
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.87 E-value=0.0035 Score=72.04 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------ccHHHHHHHHHHHHhcC
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 995 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~----~~G------------~~e~~I~~lF~~A~k~~ 995 (1203)
+..-++|+||||+|||+||..++..+ +..++.++...-... ..| ..+..+..+...++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998665 667777776542111 111 12333333333444667
Q ss_pred CceEEEccchhhcc
Q 000978 996 PSVIFVDEVDSMLG 1009 (1203)
Q Consensus 996 PsILfIDEID~L~~ 1009 (1203)
|.+|+||++..++.
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999999873
No 216
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.87 E-value=0.0053 Score=69.71 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCC----CcEEEEeeeccCCCccccCCCCCcccccc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLP----DKVIVIGSHTHTDNRKEKSHPGGLLFTKF 717 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~----g~V~vIGst~~~d~~~~~~~~~~~~l~~~ 717 (1203)
+++.+.+.+.. ..+|.||||||++.+ ..+....|...++.++ .++.||++++..+.
T Consensus 112 ~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~--------------- 171 (389)
T 1fnn_A 112 FLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV--------------- 171 (389)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH---------------
T ss_pred HHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH---------------
Confidence 45566666654 356999999999986 4555555655665443 48888988776531
Q ss_pred CCchhhhccccCCCccccccccCCCchHHHHHHhhhCCC-eEEEeCCCHHHHHHHHHHhhh
Q 000978 718 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPN-KVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 718 gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~-~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
.+ + ++..+.+||.. .+.+++++.++...+++..+.
T Consensus 172 -------~~--------~----------l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 172 -------LN--------N----------LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp -------HH--------T----------SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred -------HH--------H----------hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 00 0 23445566654 799999999999999986654
No 217
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.82 E-value=0.0038 Score=65.23 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se 971 (1203)
+..-++|+||||+|||+|+..+|...+..++.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3356999999999999999999986677888887654
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.81 E-value=0.0016 Score=66.11 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
.-|+|.|+||+||||+|++|+..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4699999999999999999999999998887654
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.0026 Score=67.58 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecccccc--------ccccc----------------cH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITS--------KWFGE----------------GE 981 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~e--L-------g~~fi~I~~seL~s--------~~~G~----------------~e 981 (1203)
+..-++|+||+|+|||+|++.++.. + +...++++...... ..++. .+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 3356999999999999999999985 3 45677777654100 00110 11
Q ss_pred H---HHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 982 K---YVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 982 ~---~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
. .+..+...+....|.+|+||++..++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1 1223444455568999999999988643
No 220
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.71 E-value=0.0006 Score=62.85 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=54.1
Q ss_pred EeCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCC
Q 000978 760 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEA 839 (1203)
Q Consensus 760 I~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p 839 (1203)
-.+|+.++|.+||+.++.+ .....+++....+-.+.||+|+||..+|.++.+. ++..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~----~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~---------------alr~---- 64 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRK----MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY---------------ALRE---- 64 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTT----SEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHH---------------HHHT----
T ss_pred CCCcCHHHHHHHHHHHHcC----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHH---------------HHHH----
Confidence 4689999999999999865 3344566667777788999999999999866542 1111
Q ss_pred CccccccccchhhhhhhhHH
Q 000978 840 DPDARLVLSCESIQYGIGIF 859 (1203)
Q Consensus 840 ~~~~kl~ls~~~l~~al~~l 859 (1203)
....|+.++|..++..+
T Consensus 65 ---~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 65 ---RRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp ---TCSEECHHHHHHHHHHH
T ss_pred ---cCCCCCHHHHHHHHHHH
Confidence 13568888888777633
No 221
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.71 E-value=0.00078 Score=60.51 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=53.7
Q ss_pred eCCCHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCC
Q 000978 761 HMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD 840 (1203)
Q Consensus 761 ~lPd~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~ 840 (1203)
++|+.++|.+||+.++.+ +....+++....+-.+.||+|+||..+|.++.+ .++..
T Consensus 1 plPd~~~R~~Il~~~l~~----~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~---------------~a~~~----- 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK----MNLTRGINLRKIAELMPGASGAEVKGVCTEAGM---------------YALRE----- 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT----SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHH---------------HHHHT-----
T ss_pred CcCCHHHHHHHHHHHhcC----CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHH---------------HHHHh-----
Confidence 589999999999998865 334456677777778899999999999886544 22221
Q ss_pred ccccccccchhhhhhhhHH
Q 000978 841 PDARLVLSCESIQYGIGIF 859 (1203)
Q Consensus 841 ~~~kl~ls~~~l~~al~~l 859 (1203)
....|+.++|..++..+
T Consensus 57 --~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp --TCSEECHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHH
Confidence 24568888888877643
No 222
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.00087 Score=68.65 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
..|+|.|+||+|||++|+.||..++++++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999887653
No 223
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.61 E-value=0.0076 Score=69.43 Aligned_cols=75 Identities=28% Similarity=0.343 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------ccHHHHHHHHHHHHhcC
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 995 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~----~~G------------~~e~~I~~lF~~A~k~~ 995 (1203)
+..-++|+|+||+|||+||..+|..+ +..++.++...-... ..| ..+.....+-..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 33569999999999999999998765 678888887432111 011 11222222223344567
Q ss_pred CceEEEccchhhcc
Q 000978 996 PSVIFVDEVDSMLG 1009 (1203)
Q Consensus 996 PsILfIDEID~L~~ 1009 (1203)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999998864
No 224
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.61 E-value=0.021 Score=74.60 Aligned_cols=174 Identities=11% Similarity=0.066 Sum_probs=99.1
Q ss_pred ccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--C--cEEEEeccccc
Q 000978 901 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--A--NFINISMSSIT 973 (1203)
Q Consensus 901 ~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL---g--~--~fi~I~~seL~ 973 (1203)
..++|.+...+.|.+.+... ....+-|.|+|+.|+|||+||+.+++.. . + .++.++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 46889999999998887531 1123568999999999999999988652 1 2 23455543310
Q ss_pred c------------c---------cccccHHHHHHHHHHHHh--cCCceEEEccchhhccCCCCCchhHHHHHHHHHHHHh
Q 000978 974 S------------K---------WFGEGEKYVKAVFSLASK--IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1030 (1203)
Q Consensus 974 s------------~---------~~G~~e~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ 1030 (1203)
. . ........+...+..... ..+.+|+||+++.. . .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~-----------~ 250 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W-----------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H-----------H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H-----------H
Confidence 0 0 000111122222222222 23789999999743 0 1
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCC-CCHHHHHHHHHHHHhhCCCCCchhHHHHHHHcCCCcHHH
Q 000978 1031 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL-PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1109 (1203)
Q Consensus 1031 ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~-Pd~eeR~eIL~~~l~~~~l~~d~dl~~LA~~T~G~Sg~D 1109 (1203)
++.+ .....||.||........ .......+.+.. ++.++-.++|................+|++.+.|. +-.
T Consensus 251 ~~~~----~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 251 LKAF----DNQCQILLTTRDKSVTDS--VMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp HTTT----CSSCEEEEEESSTTTTTT--CCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHH
T ss_pred HHhh----cCCCEEEEEcCCHHHHHh--hcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHH
Confidence 1222 123456777765433211 011234566775 88889899998776433322234578899999875 445
Q ss_pred HHHHH
Q 000978 1110 LKNLC 1114 (1203)
Q Consensus 1110 L~~L~ 1114 (1203)
|..+.
T Consensus 324 l~~~~ 328 (1249)
T 3sfz_A 324 VSLIG 328 (1249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.031 Score=66.17 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------------------c-cccccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------K-WFGEGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-------------------~-~~G~~e~~I~~lF~~A 991 (1203)
++.-|++.|++|+||||++..||..+ |..+..+++..+.. . ....+...+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35779999999999999999999877 66776666543211 0 1112344556677777
Q ss_pred HhcCCceEEEccchhh
Q 000978 992 SKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L 1007 (1203)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999987543
No 226
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.50 E-value=0.0028 Score=66.03 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA---GANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL---g~~fi~I 967 (1203)
-++++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 48899999999999987776654 5555544
No 227
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.47 E-value=0.0042 Score=84.79 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----cc--------ccHHHHHHHHHHHHh----
Q 000978 933 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 993 (1203)
Q Consensus 933 ~~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~----~G--------~~e~~I~~lF~~A~k---- 993 (1203)
..|..-++|+|+||+|||+||..+|..+ +.++++++..+....+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3455679999999999999999999877 5579999887654432 22 112224444444433
Q ss_pred cCCceEEEccchhhcc
Q 000978 994 IAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 994 ~~PsILfIDEID~L~~ 1009 (1203)
..|++||||.|..+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6899999999999975
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.01 Score=63.07 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+..-++|+||||+|||+|+..+|... +..++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 33568999999999999998887654 5666666543
No 229
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.46 E-value=0.0048 Score=69.81 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccc-c-------ccccc----------------cH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT-S-------KWFGE----------------GE 981 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~seL~-s-------~~~G~----------------~e 981 (1203)
+..-++|+||||+|||+||..+|... +..+++++...-+ . ..+|. .+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 33569999999999999999999875 5677888775421 0 00110 11
Q ss_pred ---HHHHHHHHHHHh-cCCceEEEccchhhcc
Q 000978 982 ---KYVKAVFSLASK-IAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 982 ---~~I~~lF~~A~k-~~PsILfIDEID~L~~ 1009 (1203)
..+..+...++. ..+.+|+||.+..++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999999874
No 230
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.45 E-value=0.019 Score=64.98 Aligned_cols=86 Identities=9% Similarity=0.099 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhc-cCCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 000978 643 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 721 (1203)
Q Consensus 643 i~~L~ev~~~~~-~~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~ 721 (1203)
++.|.+.+.... ..+.-|++|||+|.+- .+..+.|-..|+.-+.++++|..++.++.
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l~---~~a~naLLk~lEep~~~~~~Il~t~~~~~------------------- 150 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALLT---DAAANALLKTLEEPPAETWFFLATREPER------------------- 150 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGBC---HHHHHHHHHHHTSCCTTEEEEEEESCGGG-------------------
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhcC---HHHHHHHHHHhcCCCCCeEEEEEeCChHh-------------------
Confidence 555666554322 2457899999999852 35567788888887888888888876532
Q ss_pred hhhccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 000978 722 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 775 (1203)
Q Consensus 722 ~~l~d~al~~~~~r~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~ 775 (1203)
+.+.|..|. ..|.+..|+.++..++++.+
T Consensus 151 ------------------------l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 151 ------------------------LLATLRSRC-RLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp ------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred ------------------------CcHHHhhcc-eeeeCCCCCHHHHHHHHHHh
Confidence 355677777 68999999999988888754
No 231
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.44 E-value=0.017 Score=70.23 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=52.2
Q ss_pred ceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC--CCcHHHHhcccccccCCCCCHH
Q 000978 997 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVNLPDAP 1074 (1203)
Q Consensus 997 sILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~~I~v~~Pd~e 1074 (1203)
-+|+|||+..|+.... ......+..+...-. ...+-+|.+|.+|. .++..++.-|..+|.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~GR------a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIAQKAR------AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHHHHCT------TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHHh------hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998863211 122333444433222 34688888888886 8999999999989999999988
Q ss_pred HHHHHHH
Q 000978 1075 NRAKILQ 1081 (1203)
Q Consensus 1075 eR~eIL~ 1081 (1203)
+...||.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887774
No 232
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.44 E-value=0.011 Score=63.70 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc-------ccccccccc-----HHHHHHHHHHHHh----cCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 997 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se-------L~s~~~G~~-----e~~I~~lF~~A~k----~~Ps 997 (1203)
.-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. -.....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 458899999999999998888776 56666664321 1111 1110 0112345555544 3578
Q ss_pred eEEEccchhh
Q 000978 998 VIFVDEVDSM 1007 (1203)
Q Consensus 998 ILfIDEID~L 1007 (1203)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999866
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=0.0016 Score=68.13 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
...|+|.|++|+||||++++||..++.+++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 357999999999999999999999999887543
No 234
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.39 E-value=0.011 Score=62.77 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINISM 969 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA--~e--Lg~~fi~I~~ 969 (1203)
+..-+.|.||+|+|||+|++.++ .. .+...+.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33569999999999999999998 33 2444555543
No 235
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.36 E-value=0.007 Score=69.16 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc--------cccc----------------ccH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EGE 981 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~seL~s--------~~~G----------------~~e 981 (1203)
+..-++|+||||+|||+||..+|... +..+++++....+. ..+| ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 43568999999999999999999873 55778887654211 0001 011
Q ss_pred ---HHHHHHHHHHHh--cCCceEEEccchhhcc
Q 000978 982 ---KYVKAVFSLASK--IAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 982 ---~~I~~lF~~A~k--~~PsILfIDEID~L~~ 1009 (1203)
..+..+...+.. ..+.+|+||.+..++.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 122233344555 6789999999999874
No 236
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0021 Score=64.52 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
-|+|.|+||+||||+++.|+..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998886654
No 237
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.31 E-value=0.01 Score=64.53 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
.+..|+|.|+||+||||+|+.|+..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999877777777655
No 238
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.039 Score=62.11 Aligned_cols=76 Identities=9% Similarity=0.137 Sum_probs=56.6
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 000978 656 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 735 (1203)
Q Consensus 656 ~~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r 735 (1203)
.+|-||+|||++. +. .+..+.|...|+..+.++.+|.+++..+.
T Consensus 133 ~~~~vlilDE~~~-L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~~--------------------------------- 176 (354)
T 1sxj_E 133 HRYKCVIINEANS-LT--KDAQAALRRTMEKYSKNIRLIMVCDSMSP--------------------------------- 176 (354)
T ss_dssp -CCEEEEEECTTS-SC--HHHHHHHHHHHHHSTTTEEEEEEESCSCS---------------------------------
T ss_pred CCCeEEEEeCccc-cC--HHHHHHHHHHHHhhcCCCEEEEEeCCHHH---------------------------------
Confidence 3677999999998 43 44556677788777777777777775542
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000978 736 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 778 (1203)
Q Consensus 736 ~~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le~ 778 (1203)
+.+.|..|+ ..+.+.+|+.++...+++..+.+
T Consensus 177 ----------l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 177 ----------IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ----------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 244577778 89999999999999999866543
No 239
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.25 E-value=0.027 Score=66.52 Aligned_cols=73 Identities=21% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------cc---------c-cccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KW---------F-GEGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s----------~~---------~-G~~e~~I~~lF~~A 991 (1203)
++.-++|.||+|+||||++..||..+ |..+..+++..+.. .. . ..+.......+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34679999999999999999999777 66666666532210 00 0 11222334455555
Q ss_pred HhcCCceEEEccchhh
Q 000978 992 SKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L 1007 (1203)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999988543
No 240
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.0095 Score=67.63 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=46.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc----cccc------------ccHHHHHHHHHH---HHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWFG------------EGEKYVKAVFSL---ASK 993 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL-----g~~fi~I~~seL~s----~~~G------------~~e~~I~~lF~~---A~k 993 (1203)
-++|+||||+|||+|+..++... +..+++++..+-.. ..+| ..+...-.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988776544 56788888754211 1111 112220111222 245
Q ss_pred cCCceEEEccchhhccC
Q 000978 994 IAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 994 ~~PsILfIDEID~L~~~ 1010 (1203)
..|.+|+||-|..|+..
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 57999999999999753
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.19 E-value=0.0025 Score=65.09 Aligned_cols=31 Identities=48% Similarity=0.861 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|+|+||+|||+++++++..++++++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999999999877654
No 242
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.16 E-value=0.0024 Score=65.39 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.|+|.|+||+|||++|+.||..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999999876543
No 243
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.16 E-value=0.0032 Score=64.09 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
.|+|.|+||+|||++|++||..++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999988765
No 244
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.15 E-value=0.034 Score=67.32 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=91.4
Q ss_pred cccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCc---EEEEeccccc---
Q 000978 904 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGAN---FINISMSSIT--- 973 (1203)
Q Consensus 904 ~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~----eLg~~---fi~I~~seL~--- 973 (1203)
.|.+..++.|.+.+... . ....+-|.|+|+.|+|||+||+.+++ ..... .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------C--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------T--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhcc---------c--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 38888888888877421 0 11235799999999999999999997 23222 2333333210
Q ss_pred ---------ccccc-----------c-cHHHHHHHHHHHHhc-CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhh
Q 000978 974 ---------SKWFG-----------E-GEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1031 (1203)
Q Consensus 974 ---------s~~~G-----------~-~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~l 1031 (1203)
..... . ....+...+...-.. .+.+|+||+++.. . .+ .+
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------~---~~--~~---- 260 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------E---TI--RW---- 260 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------H---HH--HH----
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------h---hh--cc----
Confidence 00000 0 011122233333233 3789999999743 1 11 11
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhcc---cccccCCCCCHHHHHHHHHHHHhhCCCCCc--hhHHHHHHHcCCCc
Q 000978 1032 DGLRTKDTERILVLAATNRPFDLDEAVIRRL---PRRLMVNLPDAPNRAKILQVILAKEDLSPD--VDFDAIANMTDGYS 1106 (1203)
Q Consensus 1032 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRF---d~~I~v~~Pd~eeR~eIL~~~l~~~~l~~d--~dl~~LA~~T~G~S 1106 (1203)
... ....||.||.... +...+ ...+.++..+.++-.++|...........+ ....+|++.+.| .
T Consensus 261 ~~~-----~gs~ilvTTR~~~-----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G-l 329 (549)
T 2a5y_B 261 AQE-----LRLRCLVTTRDVE-----ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-N 329 (549)
T ss_dssp HHH-----TTCEEEEEESBGG-----GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT-C
T ss_pred ccc-----CCCEEEEEcCCHH-----HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC-C
Confidence 110 2235666676422 22222 245788899999999998887422211111 124667788877 4
Q ss_pred HHHHHHH
Q 000978 1107 GSDLKNL 1113 (1203)
Q Consensus 1107 g~DL~~L 1113 (1203)
+-.|..+
T Consensus 330 PLAl~~~ 336 (549)
T 2a5y_B 330 PATLMMF 336 (549)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4455544
No 245
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.12 E-value=0.014 Score=65.09 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=30.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
+.-|+|.||||+||||+|+.++.+++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3679999999999999999999998555667765443
No 246
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.11 E-value=0.0043 Score=69.65 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccc
Q 000978 430 TVNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 470 (1203)
Q Consensus 430 ~~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~ 470 (1203)
.....|||+||+| .++++||+|+++.. +.+++.++...+
T Consensus 23 ~~~~~vLi~Ge~G--tGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSG--TGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTT--SCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCC--chHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 3456899999999 99999999999975 567888877554
No 247
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.11 E-value=0.0028 Score=64.01 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|.|++|+|||++++.||..+|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999988764
No 248
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.09 E-value=0.0044 Score=63.50 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|+|.|+||+||||+++.|+..++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 5699999999999999999999999877653
No 249
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.03 E-value=0.014 Score=68.30 Aligned_cols=77 Identities=23% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc--------cccccc----------------
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFGEG---------------- 980 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~seL~s--------~~~G~~---------------- 980 (1203)
.+..-++|+||||+|||+|++.++... +...++++...... ..+|-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 344569999999999999999876443 23477777654211 001100
Q ss_pred ---HHHHHHHHHHHHhcCCceEEEccchhhccC
Q 000978 981 ---EKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1010 (1203)
Q Consensus 981 ---e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1010 (1203)
...+..+...+....|.+|+||++-.++..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112233334445567999999999988753
No 250
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.00 E-value=0.0031 Score=65.10 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e-Lg~~fi~I~ 968 (1203)
..|+|+|+||+|||++++.||.. +|++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 56999999999999999999999 687776543
No 251
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.00 E-value=0.048 Score=65.69 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=49.4
Q ss_pred eEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCC--CCcHHHHhcccccccCCCCCHHH
Q 000978 998 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVNLPDAPN 1075 (1203)
Q Consensus 998 ILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~~I~v~~Pd~ee 1075 (1203)
+|+|||...++.. .......++..+...-. ...+-+|.+|.++. .++..++..|..+|.|...+..+
T Consensus 300 vlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 8899999877531 11122233333322211 23567777888876 68888999998889999999998
Q ss_pred HHHHHHH
Q 000978 1076 RAKILQV 1082 (1203)
Q Consensus 1076 R~eIL~~ 1082 (1203)
...|+..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8888754
No 252
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.98 E-value=0.012 Score=69.70 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.+||.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999877
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.98 E-value=0.0038 Score=68.23 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
-++|.||||+|||+||++||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999998887764
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.98 E-value=0.012 Score=61.92 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~s 970 (1203)
+..-+.|.||+|+|||+|++.++..+ +...+.++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 33569999999999999999999854 2236666654
No 255
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.97 E-value=0.0049 Score=65.15 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
+..|+|.|+||+||||+|+.||..++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999876554
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.97 E-value=0.063 Score=60.54 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-------c-------------ccccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------W-------------FGEGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~-------~-------------~G~~e~~I~~lF~~A 991 (1203)
++.-++|.||+|+||||++..+|..+ +..+..+++..+... | .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44679999999999999999999876 555655554322100 0 011222223344555
Q ss_pred HhcCCceEEEccch
Q 000978 992 SKIAPSVIFVDEVD 1005 (1203)
Q Consensus 992 ~k~~PsILfIDEID 1005 (1203)
....+.+|+||+.-
T Consensus 183 ~~~~~dvvIiDtpg 196 (306)
T 1vma_A 183 LARNKDVVIIDTAG 196 (306)
T ss_dssp HHTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 66678999999875
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.96 E-value=0.0046 Score=62.42 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|.|.||+|+||||+++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 359999999999999999999999876553
No 258
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.93 E-value=0.025 Score=59.32 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.+.|.||+|+|||||++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.90 E-value=0.0048 Score=61.44 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
-|+|.||||+||||+|+.| ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8889887654
No 260
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.88 E-value=0.0052 Score=61.88 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.|++|+|||++|+.|+..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 599999999999999999999999877653
No 261
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.87 E-value=0.012 Score=64.23 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 972 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e---Lg~~fi~I~~seL 972 (1203)
.-|+|.|+||+|||++|+.|+.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46999999999999999999998 6888886665444
No 262
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0058 Score=62.43 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
.-|+|.|+||+||||+|+.|+..++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 569999999999999999999999987654
No 263
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.86 E-value=0.0065 Score=63.19 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|.|+||+||||+|+.|+..++++++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4699999999999999999999999887654
No 264
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.86 E-value=0.0061 Score=62.56 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|+|.|+||+||||+++.||..++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5699999999999999999999999876654
No 265
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.81 E-value=0.0056 Score=74.85 Aligned_cols=97 Identities=24% Similarity=0.315 Sum_probs=54.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----cccccHHHHHHHHHHH---------HhcCCceEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFGEGEKYVKAVFSLA---------SKIAPSVIF 1000 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~----~~G~~e~~I~~lF~~A---------~k~~PsILf 1000 (1203)
..++|.|+||||||+++.+++..+ +..++.+....-... ..+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 469999999999999999998765 666665543221000 0011111112222100 111357999
Q ss_pred EccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCC
Q 000978 1001 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1050 (1203)
Q Consensus 1001 IDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1050 (1203)
|||+..+- ...+..++..+. ...++++++-.+.
T Consensus 285 IDEasml~------------~~~~~~Ll~~~~-----~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG------------DALMLSLLAAVP-----PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC------------HHHHHHHHTTSC-----TTCEEEEEECTTS
T ss_pred EcCccCCC------------HHHHHHHHHhCc-----CCCEEEEEecccc
Confidence 99998661 224444444332 2467888887765
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.79 E-value=0.011 Score=68.08 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec-ccccc---------ccccccHHHHHHHHHHHHhcCCceEEEc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM-SSITS---------KWFGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~-seL~s---------~~~G~~e~~I~~lF~~A~k~~PsILfID 1002 (1203)
.-++|.||+|+|||||.++++..+ +..++.+.- .++.. ...+.....+...+..|-...|.||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 469999999999999999998876 344444332 11110 1111111223456677778899999999
Q ss_pred cch
Q 000978 1003 EVD 1005 (1203)
Q Consensus 1003 EID 1005 (1203)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 267
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.77 E-value=0.013 Score=72.02 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=24.3
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCe
Q 000978 433 PRILLSGPAGSEIYQEMLAKALAHYFGAK 461 (1203)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ 461 (1203)
..|||.|||| .++++||||||+.++..
T Consensus 328 ~~vLL~GppG--tGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPG--TAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSC--CTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCc--hHHHHHHHHHHHhCCCc
Confidence 3799999999 99999999999988655
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.76 E-value=0.0058 Score=62.41 Aligned_cols=30 Identities=33% Similarity=0.682 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|+|.|+||+||||+++.||+.++++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 459999999999999999999999876654
No 269
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.76 E-value=0.0049 Score=61.85 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.|++|+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887653
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.72 E-value=0.065 Score=60.33 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
.+..-++|.|+||+|||+||..+|... +.+++.++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 343569999999999999999998665 467777765
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.70 E-value=0.022 Score=65.20 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 971 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---------g~~fi~I~~se 971 (1203)
+..-+.|+||+|+|||+|++.++... +..+++++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33569999999999999999999886 24567777644
No 272
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.70 E-value=0.0081 Score=62.55 Aligned_cols=31 Identities=32% Similarity=0.586 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|+|.|++|+||||+|+.|+..++..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 5699999999999999999999998776653
No 273
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.69 E-value=0.072 Score=60.30 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.0
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEE
Q 000978 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLL 463 (1203)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll 463 (1203)
..++|+||+| .++++|+|+||+..++++.
T Consensus 52 ~~~ll~Gp~G--~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPG--LGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTT--SSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCEE
Confidence 5799999999 9999999999999987654
No 274
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.67 E-value=0.0053 Score=63.21 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|+|.|+||+||||+|+.|+..++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999766543
No 275
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.67 E-value=0.036 Score=60.89 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..-++|+||+|+|||+|+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998654
No 276
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.037 Score=62.49 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=53.8
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 000978 657 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 736 (1203)
Q Consensus 657 ~p~Ilfiddi~~~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~ 736 (1203)
++-|++|||+|.+- .+..+.|...|+..+..+.+|..+|..+.
T Consensus 110 ~~~viiiDe~~~l~---~~~~~~L~~~le~~~~~~~~il~~n~~~~---------------------------------- 152 (340)
T 1sxj_C 110 GFKLIILDEADAMT---NAAQNALRRVIERYTKNTRFCVLANYAHK---------------------------------- 152 (340)
T ss_dssp SCEEEEETTGGGSC---HHHHHHHHHHHHHTTTTEEEEEEESCGGG----------------------------------
T ss_pred CceEEEEeCCCCCC---HHHHHHHHHHHhcCCCCeEEEEEecCccc----------------------------------
Confidence 46799999999853 34556677888888888888888875431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 737 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 737 ~~~~~~~~~~d~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
+.++|..|+ ..+.+..++.++..+++...+
T Consensus 153 ---------i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 153 ---------LTPALLSQC-TRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp ---------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHH
T ss_pred ---------cchhHHhhc-eeEeccCCCHHHHHHHHHHHH
Confidence 355677777 588888888888777776544
No 277
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.64 E-value=0.0054 Score=62.37 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi 965 (1203)
.-|+|.|+||+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46999999999999999999999999877
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.64 E-value=0.0076 Score=63.32 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.||||+||||+|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998877655
No 279
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.62 E-value=0.079 Score=60.59 Aligned_cols=94 Identities=7% Similarity=0.199 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC---CcchhhhHHHHHhcCC-----CcEEEEeeeccCCCccccCCCCCcc
Q 000978 642 LINTLFEVVFSESRSCPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKEKSHPGGLL 713 (1203)
Q Consensus 642 ~i~~L~ev~~~~~~~~p~Ilfiddi~~~l~~---~~~~~~~lk~~L~~l~-----g~V~vIGst~~~d~~~~~~~~~~~~ 713 (1203)
+++.|.+.+.. ..+|+||+|||+|.+... +.+....+-..+..++ .++.||++++..+-
T Consensus 125 ~~~~l~~~l~~--~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~----------- 191 (412)
T 1w5s_A 125 ILKALVDNLYV--ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRA----------- 191 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHH-----------
T ss_pred HHHHHHHHHHh--cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccH-----------
Confidence 46666666653 357999999999987653 3444444444555444 68889988765431
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchHHH---HHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000978 714 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKAT---KLLTKLFPNKVTIHMPQDEALLASWKHQLD 777 (1203)
Q Consensus 714 l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d---~~l~rrFp~~I~I~lPd~E~Rl~Ilk~~Le 777 (1203)
. . .++ ..+.++|...+.+.+++.++..+++...+.
T Consensus 192 -----------~--------~----------~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 192 -----------L--------S----------YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp -----------H--------H----------HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred -----------H--------H----------HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 0 0 023 455566766688888899988888875543
No 280
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.61 E-value=0.0078 Score=63.17 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.||||+||||+|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999999877654
No 281
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.59 E-value=0.015 Score=65.47 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=48.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEeccccc-cc-------ccc---------
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG--------- 978 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---------------g----~~fi~I~~seL~-s~-------~~G--------- 978 (1203)
+..-++|+||||+|||+||..+|... | ..+++++...-+ .. .+|
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 33569999999999999999998763 2 567777765421 00 001
Q ss_pred -------ccH---HHHHHHHHHHHh-cCCceEEEccchhhcc
Q 000978 979 -------EGE---KYVKAVFSLASK-IAPSVIFVDEVDSMLG 1009 (1203)
Q Consensus 979 -------~~e---~~I~~lF~~A~k-~~PsILfIDEID~L~~ 1009 (1203)
..+ ..+..+...... ..+.+|+||.+..++.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011 122234444455 5688999999998864
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.58 E-value=0.0063 Score=62.04 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999987
No 283
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.57 E-value=0.009 Score=63.95 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|.|+||+||||+|+.||+.++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999876654
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.56 E-value=0.0058 Score=61.71 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcE
Q 000978 937 KGILLFGPPGTGKTMLAKAVAT-EAGANF 964 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~-eLg~~f 964 (1203)
.-|+|.|+||+||||+|+.|+. .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4589999999999999999998 455433
No 285
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.55 E-value=0.0088 Score=60.96 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|+|.|+||+|||++|+.|+..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5699999999999999999999999776654
No 286
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.55 E-value=0.0077 Score=63.77 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|.|+||+||||+|+.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999877654
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.55 E-value=0.01 Score=60.11 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
...++|.|++|+|||++++.|+..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3569999999999999999999998865543
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.54 E-value=0.0081 Score=63.88 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|+|.|+||+||||+++.||..++++++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999999876654
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.53 E-value=0.0095 Score=64.53 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
++..|+|.||||+||||+|+.|++.++++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 346799999999999999999999998776654
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.53 E-value=0.0065 Score=62.33 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
..-++|.||+|+|||||++.|+..++...+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3569999999999999999999987777777775543
No 291
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.52 E-value=0.007 Score=62.91 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.-|+|.|++|+||||+++.|++.++++++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 56999999999999999999999988666543
No 292
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.51 E-value=0.053 Score=59.89 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~ 969 (1203)
+..-++|.||||+|||+|++.+|..+ |.+++.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33469999999999999999998765 445655543
No 293
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.40 E-value=0.064 Score=56.84 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~e----Lg~~fi~I~~ 969 (1203)
.+..-++|+|+||+|||+||..+|.. .+.+++.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 34356999999999999999887643 2667777664
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.39 E-value=0.012 Score=60.10 Aligned_cols=31 Identities=29% Similarity=0.158 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~ 968 (1203)
-|.|.|++|+||||+++.|++.+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 38899999999999999999998 89988775
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.35 E-value=0.01 Score=63.10 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
.|+|.||||+||+|.|+.||+.++++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999876544
No 296
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.35 E-value=0.11 Score=54.95 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=68.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc---------cccccc-------------cc----cHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---------ITSKWF-------------GE----GEKYVKAV 987 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se---------L~s~~~-------------G~----~e~~I~~l 987 (1203)
..|++|+++|.|||++|-++|..+ |..+..+..-. ++..+. .. .+......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998776 77777763211 222220 00 12344555
Q ss_pred HHHHHhc----CCceEEEccchhhccCCCCCchhHHHHHHHHHHHHhhcCCcccCCccEEEEEecCCCCCCcHHHHhccc
Q 000978 988 FSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP 1063 (1203)
Q Consensus 988 F~~A~k~----~PsILfIDEID~L~~~r~~~~~~~al~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd 1063 (1203)
+..+++. ...+|+|||+-..+.-..-+ ..+++..+.. .+.+.-||.|+|.+ +++++..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNA----RPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHT----SCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHh----CcCCCEEEEECCCC---cHHHHHhCc
Confidence 5555543 47899999997543222111 1122233332 24567888888863 677777666
Q ss_pred ccccC
Q 000978 1064 RRLMV 1068 (1203)
Q Consensus 1064 ~~I~v 1068 (1203)
.+-++
T Consensus 173 ~VTem 177 (196)
T 1g5t_A 173 TVSEL 177 (196)
T ss_dssp EEEEC
T ss_pred ceeee
Confidence 55443
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.34 E-value=0.024 Score=62.42 Aligned_cols=71 Identities=27% Similarity=0.362 Sum_probs=43.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc-ccc---------cccccccHHHHHHHHHHHHhcCCceEE
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVIF 1000 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~s-eL~---------s~~~G~~e~~I~~lF~~A~k~~PsILf 1000 (1203)
+..-++|.||+|+|||||+++++..+ ...++...-. ++. ...+|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 33469999999999999999999865 2233322211 110 001111112235556666667899999
Q ss_pred Eccch
Q 000978 1001 VDEVD 1005 (1203)
Q Consensus 1001 IDEID 1005 (1203)
+||.-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99983
No 298
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.34 E-value=0.011 Score=63.52 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 972 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~seL 972 (1203)
+-|+|.||||+||+|.|+.||+.++++.+ +..++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdl 63 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDL 63 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHH
Confidence 67899999999999999999999987654 44443
No 299
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.33 E-value=0.061 Score=63.64 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 970 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~s 970 (1203)
.+..-++|.|+||+|||+|+..+|..+ |.+++.++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 344569999999999999999988654 5677777653
No 300
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.30 E-value=0.079 Score=62.49 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 970 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~s 970 (1203)
.+..-++|.|+||+|||+||..+|... +.+++.++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344569999999999999999988654 5678777653
No 301
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.29 E-value=0.0095 Score=63.04 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|+|.|+||+||||+++.||..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 569999999999999999999999976544
No 302
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.28 E-value=0.012 Score=61.99 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.|+||+||||+|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877665
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.28 E-value=0.013 Score=61.13 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFI 965 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi 965 (1203)
..-+.|.||+|+||||+++.|+..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 356999999999999999999999976443
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.25 E-value=0.016 Score=59.01 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
.-|.|.|++|+||||+++.|+..+ |++++.++..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 568999999999999999999998 9999988753
No 305
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.24 E-value=0.027 Score=63.99 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
..|+|.||+|+|||+||+.||+.++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999888888643
No 306
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.11 E-value=0.04 Score=59.44 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
.+||+||+|+|||.+|.+++..++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887777766544
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.11 E-value=0.013 Score=60.41 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
.|.|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48999999999999999999999987654
No 308
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.01 E-value=0.015 Score=62.04 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.|+|.|+||+||||+++.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766543
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.00 E-value=0.0095 Score=60.70 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAG---ANFINISM 969 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~ 969 (1203)
-|+|.|+||+||||+++.|++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 589999999999999999999885 34555543
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.99 E-value=0.015 Score=61.24 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|.|.||+|+||||+++.|+..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 369999999999999999999999977654
No 311
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.97 E-value=0.019 Score=58.95 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
|.|.|++|+||||+++.|++.+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 998886643
No 312
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=94.96 E-value=0.011 Score=53.43 Aligned_cols=68 Identities=4% Similarity=0.126 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccc
Q 000978 764 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDA 843 (1203)
Q Consensus 764 d~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~ 843 (1203)
+.++|.+||+.++.+ .....+++....+-.+.||+|+||..+|.++.+ .++.. .
T Consensus 2 d~~~R~~Il~~~l~~----~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~---------------~a~~~-------~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSK----MNLSEEVDLEDYVARPDKISGADINSICQESGM---------------LAVRE-------N 55 (83)
T ss_dssp CHHHHHHHHHHHHTT----SCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHH---------------GGGTS-------C
T ss_pred CHHHHHHHHHHHhCC----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH---------------HHHHh-------c
Confidence 578999999998865 333456666667778899999999998886544 22221 2
Q ss_pred cccccchhhhhhhh
Q 000978 844 RLVLSCESIQYGIG 857 (1203)
Q Consensus 844 kl~ls~~~l~~al~ 857 (1203)
...|+.++|..++.
T Consensus 56 ~~~i~~~df~~Al~ 69 (83)
T 3aji_B 56 RYIVLAKDFEKAYK 69 (83)
T ss_dssp CSSBCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHH
Confidence 35678888877665
No 313
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=94.94 E-value=0.01 Score=54.66 Aligned_cols=70 Identities=7% Similarity=0.050 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccccchHHHHHHHHHHHhhhhhcCCCCCccc
Q 000978 764 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDA 843 (1203)
Q Consensus 764 d~E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ls~~~Ie~iV~~A~s~~l~~~~~p~~~~ 843 (1203)
+.++|.+||+.++.+ .....+++....+-.+.||+|+||..+|.++.+.+ + .. .
T Consensus 2 d~~~R~~Il~~~~~~----~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a-----------~----r~-------~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS----MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFA-----------I----RA-------R 55 (88)
T ss_dssp CSSHHHHHHHHHHTT----SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHH-----------H----HH-------S
T ss_pred CHHHHHHHHHHHHCC----CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHH-----------H----Hh-------c
Confidence 567899999999865 34445677777777899999999999999765421 1 11 1
Q ss_pred cccccchhhhhhhhHH
Q 000978 844 RLVLSCESIQYGIGIF 859 (1203)
Q Consensus 844 kl~ls~~~l~~al~~l 859 (1203)
...|+.++|..++..+
T Consensus 56 ~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKV 71 (88)
T ss_dssp CSSBCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHH
Confidence 2357888888777633
No 314
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.89 E-value=0.017 Score=59.75 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-GANFINISM 969 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-g~~fi~I~~ 969 (1203)
.-|.|.|++|+||||+++.|+..+ |++++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 469999999999999999999998 688877653
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.88 E-value=0.027 Score=65.07 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc-cc--------ccc-cccccHHHHHHHHHHHHhcCCceEE
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SI--------TSK-WFGEGEKYVKAVFSLASKIAPSVIF 1000 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~s-eL--------~s~-~~G~~e~~I~~lF~~A~k~~PsILf 1000 (1203)
+...++|.||+|+||||++++++..+ ...++.+... ++ +.. .+|.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 33569999999999999999999876 2344443321 11 000 0111111234455666667899999
Q ss_pred Eccch
Q 000978 1001 VDEVD 1005 (1203)
Q Consensus 1001 IDEID 1005 (1203)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99983
No 316
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.84 E-value=0.084 Score=54.54 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+.+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999887776553
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.81 E-value=0.012 Score=61.13 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
.|.|.|++|+||||+++.|+. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887766543
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.77 E-value=0.027 Score=58.67 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL 972 (1203)
..-|.|.||+|+||||++++||..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3569999999999999999999988 555456664433
No 319
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.77 E-value=0.012 Score=67.82 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|+|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888744
No 320
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.73 E-value=0.12 Score=61.68 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~s 970 (1203)
+..-++|.|+||+|||+||..+|..+ |.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 33569999999999999999998765 4577777653
No 321
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.71 E-value=0.021 Score=59.09 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
-|.|.|++|+|||++++.||..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5899999999999999999999998877543
No 322
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.67 E-value=0.11 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHH-HHHHHH
Q 000978 937 KGILLFGPPGTGKTMLA-KAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LA-rALA~e 959 (1203)
+.+++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 46999999999999863 334444
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.61 E-value=0.031 Score=57.79 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGAN--FINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~--fi~I 967 (1203)
.-|+|.|+||+||||+++.|+..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 469999999999999999999998763 5443
No 324
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.54 E-value=0.11 Score=60.98 Aligned_cols=93 Identities=19% Similarity=0.330 Sum_probs=53.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-ccc
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 973 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~s-eL~ 973 (1203)
.++++++-.......|+.++. .+..-++|.||+|+||||+.++++..+. ..++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~---------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK---------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT---------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 456666655554555554421 2224589999999999999999999883 344444321 111
Q ss_pred cc-----ccccc-HHHHHHHHHHHHhcCCceEEEccch
Q 000978 974 SK-----WFGEG-EKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 974 s~-----~~G~~-e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
-. .+... .......+..+-+..|.++++.||.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 00 01110 1112344455566789999999863
No 325
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.52 E-value=0.025 Score=60.93 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
+.-+.|.||+|+||||+++.|++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3579999999999999999999999876543
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.52 E-value=0.094 Score=53.40 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKA 955 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArA 955 (1203)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4589999999999999994
No 327
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.44 E-value=0.026 Score=58.21 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
+..|.|.|++|+|||++++.|+.. |++++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 356999999999999999999998 7776643
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.39 E-value=0.014 Score=60.85 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGAN 963 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~ 963 (1203)
.-|+|.|++|+||||+++.|++.++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 569999999999999999999988544
No 329
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.37 E-value=0.17 Score=59.78 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
.+..-++|.|+||+|||+||..+|... |.+++.++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 344569999999999999999988665 6778777653
No 330
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.35 E-value=0.07 Score=65.61 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+-+++.|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776554
No 331
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.33 E-value=0.034 Score=60.49 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|.|.||+|+||||+++.||..+|+.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 469999999999999999999999987653
No 332
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.32 E-value=0.03 Score=60.83 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|.|.||+|+|||++++.||..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999977654
No 333
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.32 E-value=0.02 Score=60.10 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
-|.|+|++||||||+++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4899999999999999999999898776643
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.30 E-value=0.024 Score=59.03 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
-|.|.||+|+||||+++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 588999999999999999998 8887764
No 335
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.29 E-value=0.15 Score=57.01 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~s 970 (1203)
++.-++|.||+|+||||++..||..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44679999999999999999998765 5566666654
No 336
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.25 E-value=0.018 Score=65.77 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
+-|+|.||+|+|||+|+..||+.++..+|..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4699999999999999999999999888887654
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.22 E-value=0.04 Score=59.69 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecccccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMSSITS 974 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~--------fi~I~~seL~s 974 (1203)
.-|.|.|++|+||||+|+.|+..++++ ++.+++.++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 569999999999999999999999876 34677766643
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.22 E-value=0.031 Score=61.20 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
..|.|.|++|+||||+++.||..++.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999998877643
No 339
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.21 E-value=0.14 Score=53.59 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=35.3
Q ss_pred CcccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHH-HHHHHHHh
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTML-AKAVATEA 960 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~L-ArALA~eL 960 (1203)
..+|++++-.+.+.+.|.+.-...+... +.+.. +. ..+.+++.+|+|+|||.. +-.+...+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--II-EGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH--HH-TTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH--Hh-cCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4568888877888887776532111111 11110 01 114699999999999986 33444433
No 340
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.11 E-value=0.017 Score=60.11 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-|+|.|++|+||||+++.|+..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999874
No 341
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.07 E-value=0.049 Score=55.79 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+..-|+|.|++|+|||++++.++..+ +..++.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 33569999999999999999999887 4556666543
No 342
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.91 E-value=0.04 Score=62.63 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=45.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-cc----cc---cccccHHHHHHHHHHHHhcCCceEEEccch
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-IT----SK---WFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~se-L~----s~---~~G~~e~~I~~lF~~A~k~~PsILfIDEID 1005 (1203)
..++|.||+|+|||||+++|+..+. ...+.++... +. .. ++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998773 2345554322 11 00 110011233455666777889999999985
No 343
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.69 E-value=0.042 Score=62.16 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~se 971 (1203)
.-|+|.||+|+|||+||..+|+.++..++..|.-.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 46899999999999999999999998888776543
No 344
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.67 E-value=0.051 Score=58.12 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
..|.|.|++|+|||++++.||..+|++++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 569999999999999999999999987654
No 345
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.51 E-value=0.045 Score=57.51 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|.|.|++|+||||+++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88776654
No 346
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.51 E-value=0.17 Score=56.24 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=33.6
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.+|++++-.+.+.+.|.+.-...+.......-..+....+.+++.+|+|+|||..+-..+..+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 456777666777766665432111110000000000111479999999999999766554443
No 347
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.48 E-value=0.052 Score=56.96 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..|.|.|++|+|||++++.|+..+|++++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4599999999999999999999999877654
No 348
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.38 E-value=0.042 Score=57.37 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-|+|.||+|+|||++++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4699999999999999999999884
No 349
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.37 E-value=0.038 Score=63.23 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
.-|+|.||+|+|||+||+.||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358999999999999999999999876666553
No 350
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.32 E-value=0.22 Score=52.74 Aligned_cols=52 Identities=23% Similarity=0.189 Sum_probs=30.9
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhc---CCCCCCCceEEEEcCCCChHHHHH
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCK---GQLTKPCKGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k---~~~~~P~~gVLL~GPPGTGKT~LA 953 (1203)
.+|++++-.+.+.+.|.+.-.. .+..+.. ..+ ...+.+++.+|+|+|||..+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~---~~~~~Q~~~i~~~-~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYR---LVTEIQKQTIGLA-LQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCC---BCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCC---CCCHHHHHHHHHH-hCCCCEEEEeCCCCcHHHHH
Confidence 4688887777777777653221 1111111 000 01156999999999999853
No 351
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.29 E-value=0.1 Score=58.71 Aligned_cols=124 Identities=9% Similarity=0.036 Sum_probs=79.1
Q ss_pred eeeccCCCCCCCC-----CCCCC---CCCcccccccccccccCCCcchhHHHHHHHHHHHHhhhc-cCCCeEEEEcchhh
Q 000978 598 GVRFDKPIPDGVD-----LGGQC---EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES-RSCPFILFMKDAEK 668 (1203)
Q Consensus 598 gV~Fd~~~~~~~~-----l~~~c---~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~-~~~p~Ilfiddi~~ 668 (1203)
.++|.+|+|+|++ ++..| ...+.-|..-.+. +.+..--.|+.|++.+.... ....-|++|||+|.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~------~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE------GENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS------SSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC------cCCCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 6899999999998 44443 2222112111110 00111123556666554321 12346999999998
Q ss_pred hhcCCcchhhhHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchHHHH
Q 000978 669 SIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATK 748 (1203)
Q Consensus 669 ~l~~~~~~~~~lk~~L~~l~g~V~vIGst~~~d~~~~~~~~~~~~l~~~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~ 748 (1203)
+ +.+..+.|-+.|+.-++++++|..++.+.. +.+
T Consensus 94 l---t~~a~naLLk~LEep~~~t~fIl~t~~~~k-------------------------------------------l~~ 127 (305)
T 2gno_A 94 M---TQQAANAFLKALEEPPEYAVIVLNTRRWHY-------------------------------------------LLP 127 (305)
T ss_dssp B---CHHHHHHTHHHHHSCCTTEEEEEEESCGGG-------------------------------------------SCH
T ss_pred h---CHHHHHHHHHHHhCCCCCeEEEEEECChHh-------------------------------------------ChH
Confidence 5 345567788899998888888888875431 456
Q ss_pred HHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000978 749 LLTKLFPNKVTIHMPQDEALLASWKHQL 776 (1203)
Q Consensus 749 ~l~rrFp~~I~I~lPd~E~Rl~Ilk~~L 776 (1203)
+|..| .|.+..|++++..+.++...
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 67777 89999999998888887553
No 352
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.26 E-value=0.38 Score=57.99 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 972 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL 972 (1203)
.-|+|+|.||+|||++|+.||..+ +.....++..++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 458999999999999999999998 445555665443
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.21 E-value=0.18 Score=57.58 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
.|..-++|.|+||+|||+||..+|..+ +.++..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 343569999999999999999998764 677777665
No 354
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.19 E-value=0.048 Score=60.22 Aligned_cols=30 Identities=40% Similarity=0.546 Sum_probs=24.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-GANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-g~~fi~ 966 (1203)
.-|+|.|+||+||||+|+.|+..+ ++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 458999999999999999999974 655443
No 355
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.18 E-value=0.049 Score=65.45 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=24.4
Q ss_pred HHHHhhhCCCeEEEeCCCH-HHHHHHHHHhh
Q 000978 747 TKLLTKLFPNKVTIHMPQD-EALLASWKHQL 776 (1203)
Q Consensus 747 d~~l~rrFp~~I~I~lPd~-E~Rl~Ilk~~L 776 (1203)
.+++..||..++.|+.|++ +++..|++...
T Consensus 166 ~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 166 LEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp THHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 4678888988999999987 77889998654
No 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.16 E-value=0.24 Score=64.12 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000978 904 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 904 ~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
+|-+...+.|.+.+.. . .+.+-|.|+|+.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~----------~---d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----------L---RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----------C---CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc----------c---CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 6777777888777642 0 12356999999999999999999864
No 357
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.12 E-value=0.057 Score=56.94 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
-|.|.|++|+|||++++.||+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 59999999999999999999999999884
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.09 E-value=0.045 Score=60.61 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|.|.|++|+||||+|+.|+ .+|++++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 569999999999999999999 688776554
No 359
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.09 E-value=0.63 Score=55.76 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+..-++|.||+|+|||||++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 33569999999999999999999876
No 360
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.06 E-value=0.034 Score=57.97 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA-GANFIN 966 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL-g~~fi~ 966 (1203)
..-|.|.|++|+||||+++.|+..+ ++.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3458999999999999999999877 554443
No 361
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.04 E-value=0.067 Score=62.64 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
+.-|+|+|+||+||||+|+.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3569999999999999999999998766544
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.00 E-value=0.068 Score=56.08 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 971 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~se 971 (1203)
.-|+|.|++|+||||+++.|+..+ |.+++.++...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 568999999999999999999876 46677776543
No 363
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.99 E-value=0.06 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGA 962 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~ 962 (1203)
-++|.||+|+||||+++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 364
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.94 E-value=0.19 Score=51.73 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAK 954 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LAr 954 (1203)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997544
No 365
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.92 E-value=0.068 Score=64.44 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-ccc---cc--------ccccHHHHHHHHHHHHhcCCceEEEc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVIFVD 1002 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~se-L~s---~~--------~G~~e~~I~~lF~~A~k~~PsILfID 1002 (1203)
..++|.||+|+||||++++++..+. ...+.+.... +.. .+ ++.....+..+...+-+..|.+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998773 3455554332 210 00 01111123445556667889999999
Q ss_pred cch
Q 000978 1003 EVD 1005 (1203)
Q Consensus 1003 EID 1005 (1203)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 983
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.89 E-value=0.32 Score=58.51 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=48.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----cc--ccc----------------------ccHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SK--WFG----------------------EGEKYVK 985 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~----s~--~~G----------------------~~e~~I~ 985 (1203)
.-++|.||+|+|||+|++.++... |..++.+...+-. .. .+| ......+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ 361 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHH
Confidence 469999999999999999998765 4455555543210 00 000 1233455
Q ss_pred HHHHHHHhcCCceEEEccchhhc
Q 000978 986 AVFSLASKIAPSVIFVDEVDSML 1008 (1203)
Q Consensus 986 ~lF~~A~k~~PsILfIDEID~L~ 1008 (1203)
.++..+....|.+|+||-+..|.
T Consensus 362 ~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 362 IIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHhhCCCEEEEcChHHHH
Confidence 56667777889999999776663
No 367
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.82 E-value=0.049 Score=61.72 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
.-|+|.||+|+|||+||..||..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998777766644
No 368
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.65 E-value=0.39 Score=51.18 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVA 957 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA 957 (1203)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998665554
No 369
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.63 E-value=0.29 Score=51.48 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 000978 937 KGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LA 953 (1203)
+.+++.+|+|+|||..+
T Consensus 58 ~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 47999999999999853
No 370
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.61 E-value=0.73 Score=48.01 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=31.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
.+|++++-.+.+.+.|.+.-...+... +.+... .. .+.+++.+|+|+|||..+-..+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~-~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--IL-GMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HT-TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hC-CCCEEEECCCCCchhhhhhHHHHH
Confidence 346677666666666665321101100 111100 00 146999999999999866555443
No 371
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.51 E-value=0.06 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.-+.|.||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 372
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.41 E-value=0.07 Score=55.59 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
.-+.|.||+|+|||||++.|+..++..+..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 468999999999999999999998722333443
No 373
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.37 E-value=0.076 Score=62.10 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
.-|+|.||+|+|||+||..||..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458999999999999999999999887766543
No 374
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.36 E-value=0.098 Score=54.09 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=50.9
Q ss_pred HHHHHHhcccCCccccccccccccccchhHHHHHHHHHhhccCCcccccccccccCCCCceeeeCCCCchHHHHHHHHHH
Q 000978 375 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 454 (1203)
Q Consensus 375 ~~~~~~~~v~~~~~i~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILL~gp~g~E~yqe~LakAL 454 (1203)
.+..++..-++.+--..+|++|-+. +.+.+.++.. +--.+.. +... ..++.|||+||+| .++++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~-~~~~~~~-----~~~~--~~~~~~~l~G~~G--tGKT~la~~i 74 (202)
T 2w58_A 6 QESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRF-AERFVAE-----YEPG--KKMKGLYLHGSFG--VGKTYLLAAI 74 (202)
T ss_dssp HHHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHH-HHHHHHH-----CCSS--CCCCEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHH-HHHHHHH-----hhhc--cCCCeEEEECCCC--CCHHHHHHHH
Confidence 3445556666666667899998654 2233323222 2111111 1000 0137899999999 9999999999
Q ss_pred HhHh---CCeEEEeecc
Q 000978 455 AHYF---GAKLLIFDSH 468 (1203)
Q Consensus 455 A~~~---~a~ll~~d~~ 468 (1203)
|+++ +.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 75 ANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHTTTCCEEEEEHH
T ss_pred HHHHHHcCCeEEEEEhH
Confidence 9988 6677766654
No 375
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.35 E-value=0.078 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-+.|.||+|+|||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 376
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.34 E-value=0.1 Score=55.19 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEecc
Q 000978 937 KGILLFGPPGTGKT-MLAKAVATEA--GANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT-~LArALA~eL--g~~fi~I~~s 970 (1203)
.=.+++||.|+||| .|.+++.+.. +..++.+...
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 44899999999999 7899887655 7777777643
No 377
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.31 E-value=0.3 Score=57.66 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccc----------------c---c-ccHHHHHHHHH
Q 000978 934 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW----------------F---G-EGEKYVKAVFS 989 (1203)
Q Consensus 934 ~P~~gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~seL~s~~----------------~---G-~~e~~I~~lF~ 989 (1203)
.+++.|++.|++|+||||++..||..+ |..+..+++....... . + .+...+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999998665 6777777765321110 0 0 11233355566
Q ss_pred HHHhcCCceEEEccch
Q 000978 990 LASKIAPSVIFVDEVD 1005 (1203)
Q Consensus 990 ~A~k~~PsILfIDEID 1005 (1203)
.+......+++||=.-
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6655567899998754
No 378
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.29 E-value=0.42 Score=53.49 Aligned_cols=71 Identities=21% Similarity=0.062 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------------------ccc-cccHHHHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------KWF-GEGEKYVKAVFSLAS 992 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s-------------------~~~-G~~e~~I~~lF~~A~ 992 (1203)
+.-+++.|++|+|||+++..+|..+ +..+..+++..... ... ..+...+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4668899999999999999999776 66676666542110 000 112233345666665
Q ss_pred hcCCceEEEccchh
Q 000978 993 KIAPSVIFVDEVDS 1006 (1203)
Q Consensus 993 k~~PsILfIDEID~ 1006 (1203)
.....+|+||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45678999997543
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.23 E-value=0.29 Score=58.84 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-------------------ccccc-ccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------------------SKWFG-EGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~-------------------s~~~G-~~e~~I~~lF~~A 991 (1203)
++..|+|+|++|+||||++..||..+ |..+..+++..+. ....+ .+...+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999776 6666666652210 00001 1122233445555
Q ss_pred HhcCCceEEEccchhh
Q 000978 992 SKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L 1007 (1203)
......++|||-.-.+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 4456689999976543
No 380
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.20 E-value=0.07 Score=56.08 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998874
No 381
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.19 E-value=0.38 Score=60.81 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=32.8
Q ss_pred ccccccccHHHHHHHHHHHhCccCch-hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000978 899 TFDDIGALENVKDTLKELVMLPLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 899 t~~dI~Gle~vk~~L~e~v~~pl~~~-e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
.|.+++-...+.+.+...-..|.... ..+... ......+++.||+|+|||+++..++..
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35555555566666655444432211 111000 011136999999999999977777544
No 382
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.13 E-value=1.3 Score=50.03 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
++.-++|.|++|+||||++..||..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44679999999999999999998776 566666654
No 383
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.11 E-value=0.15 Score=53.26 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 971 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~se 971 (1203)
.-+.|.|++|+||||+++.|+..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 569999999999999999999876 66777665543
No 384
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.09 E-value=0.35 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
++.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999876
No 385
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.95 E-value=0.095 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-+.|.||+|+|||||++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998863
No 386
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.76 E-value=0.41 Score=53.42 Aligned_cols=73 Identities=23% Similarity=0.225 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc---------------ccc----c-ccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---------------KWF----G-EGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s---------------~~~----G-~~e~~I~~lF~~A 991 (1203)
++..+.|.|++|+|||+++..+|..+ +..+..+++.-... ..+ + .+....+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999776 55666555421100 000 0 1122334556666
Q ss_pred HhcCCceEEEccchhh
Q 000978 992 SKIAPSVIFVDEVDSM 1007 (1203)
Q Consensus 992 ~k~~PsILfIDEID~L 1007 (1203)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567899999987433
No 387
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.67 E-value=0.067 Score=56.89 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGANFINISM 969 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~ 969 (1203)
.++|+|.||+|+|||+||..++.... .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 36799999999999999999998875 6555443
No 388
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.49 E-value=0.67 Score=57.17 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHH-HHHHHh--CCcEEEEe
Q 000978 904 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAK-AVATEA--GANFINIS 968 (1203)
Q Consensus 904 ~Gle~vk~~L~e~v~~pl~~~e~f~k~~~~~P~~gVLL~GPPGTGKT~LAr-ALA~eL--g~~fi~I~ 968 (1203)
.-.+.+++++...+.. ++ -.||+||||||||+++- .|+..+ +..+..+.
T Consensus 189 ~LN~~Q~~AV~~al~~--------------~~--~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ--------------KE--LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp TCCHHHHHHHHHHHHC--------------SS--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHhcC--------------CC--ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 3456667777665531 11 37999999999998544 444433 55544443
No 389
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.48 E-value=0.1 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335689999999999999999999884
No 390
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.48 E-value=0.13 Score=53.78 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGA 962 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~ 962 (1203)
-|+|.||+|+|||+|++.|..+..-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3999999999999999999888743
No 391
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.45 E-value=0.66 Score=54.62 Aligned_cols=72 Identities=24% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cc---c-ccHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WF---G-EGEKYVKAVFSLA 991 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~----------------~~---G-~~e~~I~~lF~~A 991 (1203)
++..++|.|++|+||||++..+|..+ +..+..+++...... +. + .+.......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 556666665321100 00 0 1122335556666
Q ss_pred HhcCCceEEEccchh
Q 000978 992 SKIAPSVIFVDEVDS 1006 (1203)
Q Consensus 992 ~k~~PsILfIDEID~ 1006 (1203)
+.....+|+||=.-.
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 545678999986543
No 392
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.39 E-value=0.34 Score=57.66 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 369999999999999999987654
No 393
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.37 E-value=0.22 Score=52.25 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc--------cccccccccc-----HHHHHHHHHHHHhcCCceEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVIF 1000 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s--------eL~s~~~G~~-----e~~I~~lF~~A~k~~PsILf 1000 (1203)
.=.+++||+|+|||+.+-.+++.+ +..++.+... .+.+. .|-. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 458999999999999888887776 6666555321 11111 1100 0001234443332 368999
Q ss_pred Eccchhh
Q 000978 1001 VDEVDSM 1007 (1203)
Q Consensus 1001 IDEID~L 1007 (1203)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999865
No 394
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.16 E-value=0.11 Score=54.22 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
..+.|.||+|+|||||++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4699999999999999999998763
No 395
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.11 E-value=0.12 Score=51.18 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=33.5
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhHh---CCeEEEeecccccC
Q 000978 430 TVNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSLLG 472 (1203)
Q Consensus 430 ~~~~~ILL~gp~g~E~yqe~LakALA~~~---~a~ll~~d~~~~~g 472 (1203)
....-|||+||+| .++++|||||+++. +.+++ ++...+..
T Consensus 22 ~~~~~vll~G~~G--tGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 22 ETDIAVWLYGAPG--TGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp TCCSCEEEESSTT--SSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCCEEEECCCC--CCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 3455799999999 99999999999987 78888 88865544
No 396
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=91.10 E-value=0.017 Score=52.27 Aligned_cols=46 Identities=2% Similarity=-0.023 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhhhhhhhccCCchhHHHHhhccCCCcccccchhccccc
Q 000978 766 EALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 815 (1203)
Q Consensus 766 E~Rl~Ilk~~Le~~~e~l~~~~N~~~l~~vL~t~glsc~DL~~Lci~d~~ 815 (1203)
++|.+||+.++.+ .....+++....+-.+.||+|+||..+|.++.+
T Consensus 1 ~~R~~Il~~~l~~----~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~ 46 (82)
T 2dzn_B 1 MERRLIFGTIASK----MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 46 (82)
T ss_dssp -----------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4799999998865 333445666666677889999999999886544
No 397
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.10 E-value=0.8 Score=57.03 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHH-HHHHHh---CCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAK-AVATEA---GANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LAr-ALA~eL---g~~fi~I~ 968 (1203)
..+|+.||+|+|||+.+. ++...+ +..++.+.
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 689999999999999773 333222 45555544
No 398
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.01 E-value=0.16 Score=62.66 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
.-|+|.|.+|+||||+|++|+..+ |.+++.++..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 569999999999999999999999 9999998753
No 399
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.95 E-value=0.36 Score=50.53 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAK 954 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LAr 954 (1203)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998643
No 400
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.93 E-value=0.12 Score=53.03 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
-+.|.||+|+|||||++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998763
No 401
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.90 E-value=0.15 Score=60.10 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 970 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~s 970 (1203)
+..|+|+|++|+|||+++..||..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4679999999999999999999876 5667666654
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.88 E-value=0.069 Score=55.48 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999984
No 403
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.88 E-value=0.16 Score=55.02 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
..+-|.|+||+||||+|+.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3588999999999999999999999887654
No 404
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.87 E-value=0.14 Score=55.07 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFIN 966 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~ 966 (1203)
.-|.|.|++|||||++|+.||..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 458999999999999999999999999865
No 405
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.73 E-value=0.3 Score=52.10 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCchhhhhcCC--CCCCCceEEEEcCCCChHHHHH
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~--~~~P~~gVLL~GPPGTGKT~LA 953 (1203)
+..+|.+++-...+.+.+.+.- +..+..+.... .....+.+++.+|+|+|||..+
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQN---FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTT---CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 3466777776677766665531 11111111000 0001147999999999999864
No 406
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.70 E-value=1.1 Score=53.98 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 000978 935 PCKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 969 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArAL--A~eL--g~~fi~I~~ 969 (1203)
+...++|.||+|+|||+|++.+ +... +...+.++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3356999999999999999994 4433 344555554
No 407
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.70 E-value=0.59 Score=60.06 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~ 958 (1203)
.-++|.||.|+||||+.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4589999999999999999874
No 408
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.65 E-value=0.41 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
+...|+|.|.||+|||+|+.+|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999643
No 409
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.64 E-value=0.68 Score=48.92 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=31.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHH-HHHHHH
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLA-KAVATE 959 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LA-rALA~e 959 (1203)
.+|++++-.+.+.+.|.+.-...+... +.+.. + ...+.+++.+|+|+|||..+ -.+...
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~-~~~~~~l~~a~TGsGKT~~~~l~~l~~ 85 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL--G-RCGLDLIVQAKSGTGKTCVFSTIALDS 85 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--H-HTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--H-hCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 457777666777776665321101100 01110 0 01257999999999999863 333344
No 410
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.43 E-value=1 Score=55.90 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=31.8
Q ss_pred cccccccccHHHHHHHHHHHhCccCc--hhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQR--PELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV 956 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~--~e~f~k~~~~~P~~gVLL~GPPGTGKT~LArAL 956 (1203)
.+|++++-.+.+.+.+.+.=...+.. .+.+.. .+. ....+|+.||+|+|||+.+...
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~-~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLL-EGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTT-TTCCEEEECCTTSCHHHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-Hhc-CCCcEEEEcCCCCcHHHHHHHH
Confidence 56777766666666655421101111 111211 111 2367999999999999987433
No 411
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.17 E-value=0.16 Score=53.03 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000978 939 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 971 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eLg~~fi~I~~se 971 (1203)
+|++|++|+|||++|..++.. +.+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 88888887654
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.84 E-value=0.28 Score=52.63 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I 967 (1203)
.-|.|.|++|+||||+++.|+..++ ..++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4589999999999999999999986 455543
No 413
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.76 E-value=0.78 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..++|+||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 579999999999999999998765
No 414
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.72 E-value=0.3 Score=56.03 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-ccccc----c---ccc-c-------cHHHHHHHHHHHHhcCCce
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 998 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg--~~fi~I~~-seL~s----~---~~G-~-------~e~~I~~lF~~A~k~~PsI 998 (1203)
..++|.||+|+|||||+++|+..+. ...+.+.. .++.. . ++- . ....++..+..+.+..|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998773 33455542 12110 0 111 1 1112345566666778999
Q ss_pred EEEccch
Q 000978 999 IFVDEVD 1005 (1203)
Q Consensus 999 LfIDEID 1005 (1203)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999975
No 415
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.69 E-value=0.2 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998864
No 416
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.63 E-value=0.59 Score=50.36 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAK 954 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LAr 954 (1203)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998543
No 417
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.52 E-value=0.13 Score=57.38 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 973 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~~seL~ 973 (1203)
.-|.|.||+|+||||+|+.|+..++ ..+..+++..+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3589999999999999999999875 556666665553
No 418
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.19 E-value=0.25 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.-+.|.||.|+|||||+++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999999987
No 419
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.18 E-value=0.23 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999874
No 420
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.16 E-value=1.1 Score=48.02 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000978 939 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 969 (1203)
Q Consensus 939 VLL~GPPGTGKT~LArALA~eL---g~~fi~I~~ 969 (1203)
.+++||.|+|||+.+-.++..+ +..++.+..
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 6689999999999888777665 667766653
No 421
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.11 E-value=0.22 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.-+.|.||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999877
No 422
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=89.10 E-value=1.5 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.6
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAV 956 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArAL 956 (1203)
+.+++.+|+|+|||..+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999865433
No 423
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.09 E-value=1.2 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e 959 (1203)
..|+|.|++|+|||+|+.+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 57999999999999999999754
No 424
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.02 E-value=0.58 Score=53.75 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAV 956 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArAL 956 (1203)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 46999999999999944433
No 425
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=88.97 E-value=0.51 Score=57.23 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+++||++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 468999999999999887777654
No 426
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.95 E-value=0.35 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
++.-+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999876
No 427
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.86 E-value=0.84 Score=52.05 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~ 968 (1203)
..|.|.|+||+|||+|+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 579999999999999999999876 55544444
No 428
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=88.84 E-value=1.4 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=18.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+.+|+.+|+|+|||..+-..+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766555443
No 429
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.83 E-value=0.27 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGAN 963 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~ 963 (1203)
.-|-|.||.|+|||||++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 458899999999999999999988754
No 430
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.79 E-value=0.43 Score=49.25 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~ 968 (1203)
.-+.|.|++|+|||+|+..|+..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999999876 45554444
No 431
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.49 E-value=1 Score=51.00 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=31.9
Q ss_pred CcccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHH
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LA 953 (1203)
..+|++++-...+.+.|.+.-...+... +.+... .....+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCCeEEEECCCCchHHHHH
Confidence 3467777777777777765322111110 111110 0112257999999999999864
No 432
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.49 E-value=0.44 Score=48.23 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+...|+|.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999998653
No 433
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.29 E-value=1.1 Score=57.84 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVAT 958 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~ 958 (1203)
.-++|.||.|+||||+.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 434
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.23 E-value=0.67 Score=54.90 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg---~~fi~I~ 968 (1203)
..|+|.|.||+|||++++.|+..++ .+...++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 5699999999999999999999874 3444444
No 435
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.21 E-value=1.5 Score=50.01 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=33.7
Q ss_pred CcccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA 957 (1203)
..+|++++-.+.+.+.|...-...+... +.+.. +. ..+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~-~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ--II-KGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HH-TTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--Hh-CCCCEEEECCCCCCchHHHHHHH
Confidence 3568888877888877766432111110 11110 00 11469999999999997654433
No 436
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.21 E-value=0.052 Score=53.65 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecc
Q 000978 431 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 468 (1203)
Q Consensus 431 ~~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~ 468 (1203)
....|||+||+| .++++|||||+++.+ +++.+|.+
T Consensus 26 ~~~~vll~G~~G--tGKt~lA~~i~~~~~-~~~~~~~~ 60 (143)
T 3co5_A 26 RTSPVFLTGEAG--SPFETVARYFHKNGT-PWVSPARV 60 (143)
T ss_dssp CSSCEEEEEETT--CCHHHHHGGGCCTTS-CEECCSST
T ss_pred CCCcEEEECCCC--ccHHHHHHHHHHhCC-CeEEechh
Confidence 445799999999 999999999999988 77777653
No 437
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.16 E-value=1.3 Score=49.12 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=32.7
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhc----CCCCCCCceEEEEcCCCChHHHH
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCK----GQLTKPCKGILLFGPPGTGKTML 952 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k----~~~~~P~~gVLL~GPPGTGKT~L 952 (1203)
..+|.+++-...+.+.|...- +..+..+.. .-+..+.+.+|+.+|+|+|||..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH
Confidence 457888887788877776532 222111111 01122346899999999999985
No 438
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.14 E-value=0.33 Score=59.32 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 971 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg----~~fi~I~~se 971 (1203)
.-|+|.|++|+||||+|++|+..++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 5699999999999999999999985 7788887543
No 439
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.04 E-value=2.3 Score=41.29 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.|++.|++|+|||+|+.++...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997653
No 440
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.01 E-value=0.3 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-+.|.||+|+|||||.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4589999999999999999998874
No 441
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.84 E-value=0.31 Score=54.89 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAGANF 964 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg~~f 964 (1203)
+...+.|+||+|+|||||++.|+..+...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 345699999999999999999999884333
No 442
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.76 E-value=2.1 Score=48.44 Aligned_cols=57 Identities=21% Similarity=0.072 Sum_probs=31.1
Q ss_pred cccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 957 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LArALA 957 (1203)
.+|++++-.+.+.+.|.+.-...+... +.+... . ..+.+++.+|+|+|||..+-..+
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~-~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA--I-TGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--H-HTCCEEEECCTTSCHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--h-cCCCEEEECCCCcHHHHHHHHHH
Confidence 467777766777776665321101100 011000 0 01469999999999998654433
No 443
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=87.75 E-value=0.94 Score=51.42 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCcccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHHHH
Q 000978 896 IGVTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 955 (1203)
Q Consensus 896 ~~vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LArA 955 (1203)
...+|+++.-...+.+.|.+.-...+... +.+.. +. ..+.+++.+|+|+|||..+-.
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~-~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP--CI-KGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HH-TTCCEEECCCSCSSSHHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH--Hh-CCCCEEEECCCCCcccHHHHH
Confidence 34567777777777777765322111110 11100 00 124699999999999986433
No 444
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.75 E-value=0.38 Score=56.38 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000978 938 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 970 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eLg~~fi~I~~s 970 (1203)
.+||++|+|+|||..+-+++..++..++.+-+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999888888887777766554
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.73 E-value=0.47 Score=50.45 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~ 968 (1203)
.-|.|.|++|+||||+++.|+..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 458899999999999999999888 56666554
No 446
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.72 E-value=1.5 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
...|+|.|++|+|||+|+.++...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.71 E-value=0.36 Score=51.55 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-|.|.|++|+||||+++.|+..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999993
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.64 E-value=0.15 Score=55.45 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEE
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA-GANFI 965 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL-g~~fi 965 (1203)
+.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999998 54333
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.59 E-value=0.33 Score=55.16 Aligned_cols=41 Identities=34% Similarity=0.472 Sum_probs=36.7
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCC
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 474 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~ 474 (1203)
.+.|+|+||+| .++.+||++||+.+++.++.+|+..+|-++
T Consensus 5 ~~~i~i~GptG--sGKTtla~~La~~l~~~iis~Ds~qvy~~~ 45 (323)
T 3crm_A 5 PPAIFLMGPTA--AGKTDLAMALADALPCELISVDSALIYRGM 45 (323)
T ss_dssp CEEEEEECCTT--SCHHHHHHHHHHHSCEEEEEECTTTTBTTC
T ss_pred CcEEEEECCCC--CCHHHHHHHHHHHcCCcEEeccchhhhcCC
Confidence 35799999999 899999999999999999999998877544
No 450
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.52 E-value=0.4 Score=49.92 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANF 964 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~f 964 (1203)
.+|||.|++|+|||++|.++... |..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 68999999999999999999874 4443
No 451
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.43 E-value=0.57 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e 959 (1203)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 452
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.39 E-value=1.8 Score=49.36 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 969 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL----g~~fi~I~~ 969 (1203)
++|+.+|+|+|||..+-+++... +..++.+.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999887776554 555555554
No 453
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=87.37 E-value=0.43 Score=61.81 Aligned_cols=65 Identities=25% Similarity=0.433 Sum_probs=52.2
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCCCcceeeccCCCCCCCCCCCCCCCCcccc
Q 000978 547 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 622 (1203)
Q Consensus 547 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff 622 (1203)
.+-.|.-||||.||..+. .-+.|.||.|+-.--.+..--+-|.||.|--.|.||++.|++..|.=
T Consensus 1062 ~~Q~F~LGDRVv~VqdsG-----------~VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrcs~~RG~~ 1126 (1155)
T 3pie_A 1062 RSQRFHLGDRVMYIQDSG-----------KVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLG 1126 (1155)
T ss_pred cCCcccCCCeEEEecCCC-----------CCccccceEEEEEecCCCceEEEEEeccCccCCCccccccccccccc
Confidence 355589999999998443 25679999998777655556799999999999999999999875443
No 454
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.19 E-value=1 Score=51.69 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=34.2
Q ss_pred cCCCCceeeeCCCCchHHHHHHHHHHHhHhCCe--EEEeecccccC
Q 000978 429 TTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK--LLIFDSHSLLG 472 (1203)
Q Consensus 429 ~~~~~~ILL~gp~g~E~yqe~LakALA~~~~a~--ll~~d~~~~~g 472 (1203)
......||+.|++| .+++++|+++.++.+-+ |+.+|...+..
T Consensus 149 a~~~~~vli~GesG--tGKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 149 AKSKAPVLITGESG--TGKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp HTSCSCEEEECCTT--SSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred hccchhheEEeCCC--chHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 34455699999999 79999999999988755 89999876644
No 455
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=87.17 E-value=0.9 Score=51.12 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=31.9
Q ss_pred CcccccccccHHHHHHHHHHHhCccCch--hhhhcCCCCCCCceEEEEcCCCChHHHHH
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~--e~f~k~~~~~P~~gVLL~GPPGTGKT~LA 953 (1203)
..+|++++-.+.+.+.|...-...+... +.+.. +. ..+.+++.+|+|+|||..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~-~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--II-EGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HH-HTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--Hh-CCCCEEEECCCCChHHHHH
Confidence 4568888877888877776422111110 11110 00 0146999999999999864
No 456
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.15 E-value=0.5 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
++.-++|.||.|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44669999999999999999999876
No 457
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.11 E-value=0.37 Score=53.73 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEE-ecccc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGA-----NFINI-SMSSI 972 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~-----~fi~I-~~seL 972 (1203)
+.-|.|.||+|+|||||++.|+..++. +.+.+ ....+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 356899999999999999999988853 24444 55554
No 458
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.05 E-value=0.22 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH-HHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVA-TEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA-~eL 960 (1203)
.-+.|.||+|+|||||++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458999999999999999999 765
No 459
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.93 E-value=0.32 Score=49.38 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
.+.|+|.||+| .++.+++|+||+.+|..++-.|.
T Consensus 5 ~~~i~l~G~~G--sGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMG--AGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHhCCCEEEChH
Confidence 46899999999 99999999999999999886665
No 460
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.65 E-value=0.37 Score=48.82 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-.+|+||.|+|||+|++||+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3579999999999999999998875
No 461
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.57 E-value=0.64 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
.-|.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 462
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.55 E-value=2.2 Score=46.36 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e 959 (1203)
+.|+|.|.||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999754
No 463
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.52 E-value=0.4 Score=54.01 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 335688999999999999999998873
No 464
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=86.47 E-value=1.8 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..|+|.|.+|+|||+|+.++...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998543
No 465
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.46 E-value=0.82 Score=51.84 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEeccc
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSS 971 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eLg~-----~fi~I~~se 971 (1203)
+.-+.|.||+|+||||+++.|+..++. .+..+....
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 356899999999999999999998752 344555443
No 466
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.42 E-value=0.43 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999999877
No 467
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=86.37 E-value=1.5 Score=46.49 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 000978 937 KGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LA 953 (1203)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.18 E-value=0.42 Score=54.06 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=37.4
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCC
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 474 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~ 474 (1203)
++-|+++||+| .++..||++||+.++..++..|+-.+|-++
T Consensus 10 ~~~i~i~Gptg--sGKt~la~~La~~~~~~iis~Ds~qvY~~~ 50 (316)
T 3foz_A 10 PKAIFLMGPTA--SGKTALAIELRKILPVELISVDSALIYKGM 50 (316)
T ss_dssp CEEEEEECCTT--SCHHHHHHHHHHHSCEEEEECCTTTTBTTC
T ss_pred CcEEEEECCCc--cCHHHHHHHHHHhCCCcEEecccccccccc
Confidence 45789999999 899999999999999999999999898754
No 469
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.02 E-value=1 Score=48.78 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAK 954 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LAr 954 (1203)
+.+|+.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998543
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.96 E-value=0.38 Score=54.93 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=36.3
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeecccccCCC
Q 000978 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 474 (1203)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~g~~ 474 (1203)
-|+|.||.| .++..|+++||+.++..++..|+-.+|-++
T Consensus 42 lIvI~GPTg--sGKTtLa~~LA~~l~~eiIs~Ds~qvYr~m 80 (339)
T 3a8t_A 42 LLVLMGATG--TGKSRLSIDLAAHFPLEVINSDKMQVYKGL 80 (339)
T ss_dssp EEEEECSTT--SSHHHHHHHHHTTSCEEEEECCSSTTBSSC
T ss_pred eEEEECCCC--CCHHHHHHHHHHHCCCcEEcccccccccce
Confidence 699999999 899999999999999999999998888754
No 471
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=85.90 E-value=0.58 Score=47.38 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHh----CCeEEEeec
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYF----GAKLLIFDS 467 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~----~a~ll~~d~ 467 (1203)
...|+|+||+| .++++|+|+||+.. |...+.++.
T Consensus 38 g~~~~l~G~~G--~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPG--VGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSS--SSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 56899999999 99999999999887 555444443
No 472
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=85.89 E-value=1.3 Score=55.04 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHh--CCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAV-ATEA--GANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArAL-A~eL--g~~fi~I~ 968 (1203)
..+|+.||+|+|||+.+... ...+ +..++.+.
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 57999999999999977433 3332 44444443
No 473
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.49 E-value=0.45 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.-+.|.|++|+|||+|++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998875
No 474
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.44 E-value=0.47 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e 959 (1203)
..|++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999864
No 475
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.42 E-value=0.52 Score=47.35 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.0
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeec
Q 000978 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 467 (1203)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~ 467 (1203)
.-|+|+||+| .++.+++|+||+.++..++.+|.
T Consensus 4 ~~i~l~G~~G--sGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSS--AGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTT--SSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCC--CCHHHHHHHHHHhcCCCeEEecc
Confidence 4699999999 89999999999999998887775
No 476
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.41 E-value=1.6 Score=44.05 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
...|+|.|++|+|||+|..++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998754
No 477
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.22 E-value=1.2 Score=52.32 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=30.4
Q ss_pred cccccccccHHHHHHHHHHHhCccCchhhhhc----CCCCCCCceEEEEcCCCChHHHHH
Q 000978 898 VTFDDIGALENVKDTLKELVMLPLQRPELFCK----GQLTKPCKGILLFGPPGTGKTMLA 953 (1203)
Q Consensus 898 vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k----~~~~~P~~gVLL~GPPGTGKT~LA 953 (1203)
.+|.++.-...+.+.|.+.- +..+..+.. .-...+.+.+|+.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 46777777777776665521 111111110 001122368999999999999863
No 478
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.15 E-value=1.7 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.-+.|.||||+|||||.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999765
No 479
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.12 E-value=0.64 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAG 961 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg 961 (1203)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998863
No 480
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.07 E-value=0.45 Score=50.79 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I~ 968 (1203)
-.|-|+|..|||||++++.++. +|++++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3589999999999999999998 998887655
No 481
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.05 E-value=1.8 Score=46.94 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=37.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHH------------HHHHHHHHHHhcCCceEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK------------YVKAVFSLASKIAPSVIFV 1001 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL---g~~fi~I~~seL~s~~~G~~e~------------~I~~lF~~A~k~~PsILfI 1001 (1203)
.=.+++|+.|+|||+.+-..+..+ |..++.+... +-..+.+.... ....++..+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~-~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET-TCCCC-----------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec-CCccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 347889999999998655555444 5566655422 11111000000 001234444 34689999
Q ss_pred ccchhh
Q 000978 1002 DEVDSM 1007 (1203)
Q Consensus 1002 DEID~L 1007 (1203)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999866
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.05 E-value=0.59 Score=50.36 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 968 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL-------g~~fi~I~ 968 (1203)
.-|.|.|++|+||||+++.|++.+ +.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 458999999999999999999887 56665443
No 483
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.90 E-value=0.56 Score=48.59 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..|+|.|++|+|||+|+.+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998764
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.85 E-value=0.61 Score=52.28 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhHhC----CeEEEeecccc
Q 000978 432 NPRILLSGPAGSEIYQEMLAKALAHYFG----AKLLIFDSHSL 470 (1203)
Q Consensus 432 ~~~ILL~gp~g~E~yqe~LakALA~~~~----a~ll~~d~~~~ 470 (1203)
.+.|||+||+| .+++.||+|||+++. .+.+.+....|
T Consensus 152 ~~~lll~G~~G--tGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMG--IGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 57899999999 999999999999665 66776665443
No 485
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.71 E-value=0.78 Score=56.45 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000978 938 GILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 938 gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.+||.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999877766554
No 486
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=84.71 E-value=2.3 Score=53.86 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
..-++|.||.|+|||++.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 356999999999999999999864
No 487
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.62 E-value=0.8 Score=48.93 Aligned_cols=31 Identities=29% Similarity=0.229 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGANFINI 967 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~~fi~I 967 (1203)
.-|.|.|++|+||||+++.++..++.++..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 4589999999999999999999998754433
No 488
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.62 E-value=2.2 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
...+.|.|+||+|||+|+.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998765
No 489
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.57 E-value=0.48 Score=48.02 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=28.8
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhHhCCeEEEee
Q 000978 433 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 466 (1203)
Q Consensus 433 ~~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d 466 (1203)
+.|+|.||+| .++.++||+||+.+|++++-.|
T Consensus 3 ~~I~l~G~~G--sGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPG--SGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTT--SSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCC--CCHHHHHHHHHHHcCCCEEeCc
Confidence 5799999999 8999999999999999876555
No 490
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=84.38 E-value=3.5 Score=46.83 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 000978 935 PCKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 935 P~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
....++|.|++|+|||+|..+++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 491
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.36 E-value=0.68 Score=45.42 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 000978 936 CKGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 936 ~~gVLL~GPPGTGKT~LArALA~e 959 (1203)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999753
No 492
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=84.31 E-value=0.42 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..+.|.|++|+|||||++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999887
No 493
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.21 E-value=0.53 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e 959 (1203)
..+.|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999875
No 494
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.18 E-value=0.49 Score=57.01 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEAGA 962 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eLg~ 962 (1203)
..|+|.|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999975
No 495
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.14 E-value=0.59 Score=45.65 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000978 937 KGILLFGPPGTGKTMLAKAVATE 959 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~e 959 (1203)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 496
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.97 E-value=0.61 Score=50.65 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=32.2
Q ss_pred ceeeeCCCCchHHHHHHHHHHHhHhCCeEEEeeccccc
Q 000978 434 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 471 (1203)
Q Consensus 434 ~ILL~gp~g~E~yqe~LakALA~~~~a~ll~~d~~~~~ 471 (1203)
-|+|.||+| .++.+||++||+.+++.++..|....+
T Consensus 3 li~I~G~~G--SGKSTla~~La~~~~~~~i~~D~~~~~ 38 (253)
T 2ze6_A 3 LHLIYGPTC--SGKTDMAIQIAQETGWPVVALDRVQCC 38 (253)
T ss_dssp EEEEECCTT--SSHHHHHHHHHHHHCCCEEECCSGGGC
T ss_pred EEEEECCCC--cCHHHHHHHHHhcCCCeEEeccHHhcc
Confidence 489999999 899999999999999999988885544
No 497
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.97 E-value=0.52 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 498
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.89 E-value=0.52 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
.-+.|.||.|+|||||.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999998765
No 499
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.88 E-value=1 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000978 937 KGILLFGPPGTGKTMLAKAVATEA 960 (1203)
Q Consensus 937 ~gVLL~GPPGTGKT~LArALA~eL 960 (1203)
..|+|.|.+|+|||+|+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 500
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.88 E-value=4.7 Score=46.85 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=29.9
Q ss_pred CcccccccccHHHHHHHHHHHhCccCchhhhhcCC--CCCCCceEEEEcCCCChHHHH
Q 000978 897 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTML 952 (1203)
Q Consensus 897 ~vt~~dI~Gle~vk~~L~e~v~~pl~~~e~f~k~~--~~~P~~gVLL~GPPGTGKT~L 952 (1203)
-.+|++++-.+.+.+.|.+.- +..+..+.... .....+.+++.+|+|+|||..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSG---YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 456777776677777665431 11111111100 000125799999999999984
Done!