Query 000979
Match_columns 1202
No_of_seqs 652 out of 4555
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 12:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 6E-187 1E-191 1691.0 80.7 1119 45-1202 234-1387(1391)
2 PLN03140 ABC transporter G fam 100.0 5E-181 1E-185 1766.1 123.0 1193 7-1202 272-1470(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 2E-160 5E-165 1580.9 118.0 1116 45-1201 183-1393(1394)
4 KOG0061 Transporter, ABC super 100.0 3.2E-95 7E-100 886.4 56.3 579 600-1202 22-612 (613)
5 TIGR00955 3a01204 The Eye Pigm 100.0 2E-94 4.3E-99 892.5 60.7 566 627-1202 36-617 (617)
6 PLN03211 ABC transporter G-25; 100.0 4.6E-94 1E-98 886.1 62.4 582 600-1199 36-659 (659)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-91 3.4E-96 926.2 63.7 589 600-1199 26-695 (1394)
8 PLN03140 ABC transporter G fam 100.0 1.9E-90 4.1E-95 910.2 59.9 592 599-1199 127-790 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 1.7E-84 3.7E-89 793.2 40.7 564 627-1200 126-732 (1391)
10 KOG0055 Multidrug/pheromone ex 100.0 4.1E-80 8.9E-85 757.8 33.0 696 48-841 467-1208(1228)
11 KOG0061 Transporter, ABC super 100.0 3.1E-65 6.7E-70 623.0 43.4 467 39-522 138-607 (613)
12 PLN03211 ABC transporter G-25; 100.0 6E-62 1.3E-66 600.9 47.5 462 41-522 176-657 (659)
13 TIGR00955 3a01204 The Eye Pigm 100.0 8.2E-62 1.8E-66 601.7 48.5 470 40-522 134-612 (617)
14 PTZ00265 multidrug resistance 100.0 6.4E-60 1.4E-64 625.4 37.7 218 601-841 1163-1447(1466)
15 TIGR01257 rim_protein retinal- 100.0 8.4E-57 1.8E-61 590.6 57.1 223 603-852 1937-2161(2272)
16 PLN03130 ABC transporter C fam 100.0 3.1E-55 6.6E-60 586.4 43.2 214 601-843 1235-1458(1622)
17 PLN03232 ABC transporter C fam 100.0 3.4E-55 7.4E-60 586.9 42.4 213 601-842 1232-1454(1495)
18 COG1123 ATPase components of v 100.0 4.6E-53 9.9E-58 488.0 38.1 225 604-841 281-514 (539)
19 TIGR00957 MRP_assoc_pro multi 100.0 3.9E-52 8.4E-57 558.2 39.9 213 601-842 1282-1504(1522)
20 PTZ00243 ABC transporter; Prov 100.0 1.5E-51 3.3E-56 550.4 42.0 212 602-842 1307-1529(1560)
21 PRK15134 microcin C ABC transp 100.0 3.3E-49 7.2E-54 483.9 36.3 225 604-841 276-510 (529)
22 TIGR03269 met_CoM_red_A2 methy 100.0 4.9E-49 1.1E-53 481.8 37.4 217 604-841 280-512 (520)
23 PRK10261 glutathione transport 100.0 7.8E-49 1.7E-53 486.5 37.7 227 603-842 313-549 (623)
24 TIGR01271 CFTR_protein cystic 100.0 1.1E-48 2.4E-53 523.1 41.9 211 602-842 1216-1436(1490)
25 PRK13549 xylose transporter AT 100.0 4.9E-49 1.1E-53 479.8 34.6 223 604-844 260-492 (506)
26 PRK09700 D-allose transporter 100.0 5.5E-49 1.2E-53 480.3 31.8 202 631-841 278-493 (510)
27 PRK10762 D-ribose transporter 100.0 3.3E-48 7.1E-53 471.9 34.6 204 631-843 267-481 (501)
28 COG4172 ABC-type uncharacteriz 100.0 1.2E-47 2.7E-52 413.7 34.8 227 603-841 276-511 (534)
29 KOG0054 Multidrug resistance-a 100.0 2.8E-47 6.1E-52 480.8 41.3 214 600-842 1135-1358(1381)
30 COG1126 GlnQ ABC-type polar am 100.0 1.3E-48 2.8E-53 392.5 22.8 215 604-842 3-221 (240)
31 TIGR02633 xylG D-xylose ABC tr 100.0 8.6E-48 1.9E-52 469.0 35.0 221 604-842 258-488 (500)
32 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-47 2.5E-52 467.2 35.0 204 631-843 278-489 (510)
33 PRK11288 araG L-arabinose tran 100.0 2.3E-47 4.9E-52 464.6 33.1 205 631-844 268-483 (501)
34 PRK10938 putative molybdenum t 100.0 9.4E-47 2E-51 458.7 32.6 216 603-840 260-486 (490)
35 PRK10982 galactose/methyl gala 100.0 1.6E-46 3.5E-51 456.3 32.9 215 604-842 251-476 (491)
36 COG1135 AbcC ABC-type metal io 100.0 1.1E-45 2.4E-50 390.4 20.5 219 604-842 2-227 (339)
37 COG1125 OpuBA ABC-type proline 100.0 1.1E-45 2.4E-50 377.9 18.2 215 604-843 2-222 (309)
38 COG1116 TauB ABC-type nitrate/ 100.0 5.1E-45 1.1E-49 379.8 22.5 204 603-832 3-207 (248)
39 COG1127 Ttg2A ABC-type transpo 100.0 5.4E-45 1.2E-49 372.3 21.8 230 602-855 7-248 (263)
40 KOG0058 Peptide exporter, ABC 100.0 9.1E-45 2E-49 423.5 24.0 250 566-841 428-686 (716)
41 PRK15064 ABC transporter ATP-b 100.0 2.9E-43 6.3E-48 431.5 36.0 198 603-841 319-520 (530)
42 PRK11819 putative ABC transpor 100.0 8.6E-43 1.9E-47 428.4 38.8 201 603-840 324-527 (556)
43 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.5E-44 1.4E-48 377.8 24.3 217 603-844 4-225 (254)
44 KOG0055 Multidrug/pheromone ex 100.0 7E-44 1.5E-48 438.9 27.7 268 549-843 294-573 (1228)
45 COG3638 ABC-type phosphate/pho 100.0 2.8E-44 6.1E-49 366.0 18.6 222 603-845 3-236 (258)
46 PRK13409 putative ATPase RIL; 100.0 8.3E-43 1.8E-47 425.7 34.7 211 603-855 340-554 (590)
47 COG1131 CcmA ABC-type multidru 100.0 1.2E-43 2.7E-48 397.3 25.2 215 603-841 4-221 (293)
48 COG1136 SalX ABC-type antimicr 100.0 1.3E-43 2.9E-48 370.4 23.5 209 604-834 2-219 (226)
49 COG1120 FepC ABC-type cobalami 100.0 8E-44 1.7E-48 379.5 22.0 228 603-852 2-236 (258)
50 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.5E-42 7.6E-47 423.2 39.0 201 603-840 322-525 (552)
51 COG1118 CysA ABC-type sulfate/ 100.0 5.6E-44 1.2E-48 376.1 18.3 207 627-843 13-224 (345)
52 COG4555 NatA ABC-type Na+ tran 100.0 2.8E-44 6.1E-49 355.0 14.6 215 604-842 2-218 (245)
53 COG3842 PotA ABC-type spermidi 100.0 1.1E-43 2.5E-48 395.0 20.9 218 602-843 4-223 (352)
54 COG3839 MalK ABC-type sugar tr 100.0 1.8E-43 4E-48 391.3 21.9 216 603-843 3-220 (338)
55 COG2884 FtsE Predicted ATPase 100.0 1.9E-43 4.1E-48 346.5 18.9 214 604-841 2-221 (223)
56 PRK10636 putative ABC transpor 100.0 6.9E-42 1.5E-46 424.4 36.8 198 603-842 312-513 (638)
57 PRK11147 ABC transporter ATPas 100.0 3.7E-41 8.1E-46 419.4 38.1 202 603-841 319-523 (635)
58 PLN03073 ABC transporter F fam 100.0 8.5E-41 1.9E-45 414.7 39.0 200 603-841 508-709 (718)
59 COG1117 PstB ABC-type phosphat 100.0 1.6E-42 3.4E-47 346.3 17.9 219 602-842 6-233 (253)
60 TIGR01257 rim_protein retinal- 100.0 3.2E-37 7E-42 406.5 72.3 217 601-841 926-1144(2272)
61 PRK13537 nodulation ABC transp 100.0 4.6E-41 9.9E-46 380.7 25.9 216 602-842 6-223 (306)
62 COG3840 ThiQ ABC-type thiamine 100.0 9.1E-42 2E-46 331.3 16.8 212 604-842 2-215 (231)
63 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-40 2.9E-45 379.2 26.2 218 604-842 2-226 (343)
64 COG1137 YhbG ABC-type (unclass 100.0 4.2E-42 9E-47 339.3 11.9 207 627-843 15-225 (243)
65 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-40 2.4E-45 383.4 25.2 217 603-843 3-221 (356)
66 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-40 3.3E-45 381.8 25.4 215 603-842 4-220 (353)
67 PRK11432 fbpC ferric transport 100.0 1.9E-40 4.1E-45 380.2 25.7 215 603-842 6-222 (351)
68 COG1124 DppF ABC-type dipeptid 100.0 8.3E-41 1.8E-45 344.1 20.3 218 603-842 3-227 (252)
69 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-40 4.9E-45 380.7 25.3 216 603-843 5-225 (362)
70 PRK13536 nodulation factor exp 100.0 5.6E-40 1.2E-44 375.2 25.8 215 603-842 41-257 (340)
71 COG1122 CbiO ABC-type cobalt t 100.0 2.2E-40 4.8E-45 354.5 21.0 215 603-841 3-223 (235)
72 cd03261 ABC_Org_Solvent_Resist 100.0 6.5E-40 1.4E-44 359.9 25.2 214 604-841 1-221 (235)
73 PRK09452 potA putrescine/sperm 100.0 9.9E-40 2.1E-44 376.5 26.0 215 603-842 14-230 (375)
74 PRK10851 sulfate/thiosulfate t 100.0 8.6E-40 1.9E-44 375.6 25.2 217 604-842 3-222 (353)
75 PRK11607 potG putrescine trans 100.0 2.1E-39 4.5E-44 374.7 26.8 215 603-842 19-235 (377)
76 cd03259 ABC_Carb_Solutes_like 100.0 2.1E-39 4.7E-44 350.4 24.5 211 604-839 1-213 (213)
77 TIGR00960 3a0501s02 Type II (G 100.0 1.9E-39 4.1E-44 351.6 23.8 208 604-834 2-215 (216)
78 COG0410 LivF ABC-type branched 100.0 1.3E-39 2.7E-44 333.2 20.3 214 604-843 4-223 (237)
79 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.9E-39 1.1E-43 349.2 26.1 216 604-841 1-218 (220)
80 PRK11000 maltose/maltodextrin 100.0 2.7E-39 5.9E-44 374.6 25.4 215 603-842 3-219 (369)
81 TIGR01288 nodI ATP-binding ABC 100.0 3.4E-39 7.3E-44 366.4 25.5 214 603-841 4-219 (303)
82 COG0411 LivG ABC-type branched 100.0 6.8E-40 1.5E-44 337.8 17.8 208 627-843 15-236 (250)
83 cd03265 ABC_DrrA DrrA is the A 100.0 4.3E-39 9.2E-44 349.7 24.7 213 604-841 1-216 (220)
84 TIGR01186 proV glycine betaine 100.0 2.6E-39 5.7E-44 370.3 23.8 205 627-843 4-216 (363)
85 TIGR01188 drrA daunorubicin re 100.0 2.2E-39 4.8E-44 367.8 22.6 202 628-841 5-208 (302)
86 COG4152 ABC-type uncharacteriz 100.0 1.2E-39 2.6E-44 331.3 18.0 213 604-842 3-215 (300)
87 cd03301 ABC_MalK_N The N-termi 100.0 7.3E-39 1.6E-43 346.4 25.1 211 604-839 1-213 (213)
88 cd03269 ABC_putative_ATPase Th 100.0 6.3E-39 1.4E-43 346.0 24.5 210 604-839 1-210 (210)
89 PRK11153 metN DL-methionine tr 100.0 6.7E-39 1.5E-43 368.6 26.2 218 604-842 2-226 (343)
90 cd03219 ABC_Mj1267_LivG_branch 100.0 6.5E-39 1.4E-43 352.6 24.8 216 604-841 1-227 (236)
91 cd03296 ABC_CysA_sulfate_impor 100.0 8.2E-39 1.8E-43 351.9 25.6 218 603-842 2-222 (239)
92 COG2274 SunT ABC-type bacterio 100.0 1.6E-38 3.5E-43 388.6 30.4 219 596-842 464-692 (709)
93 PRK09536 btuD corrinoid ABC tr 100.0 5.3E-39 1.2E-43 372.1 24.0 219 603-843 3-225 (402)
94 cd03218 ABC_YhbG The ABC trans 100.0 8.7E-39 1.9E-43 350.6 24.5 214 604-842 1-218 (232)
95 TIGR03522 GldA_ABC_ATP gliding 100.0 8.4E-39 1.8E-43 362.5 24.6 213 604-842 3-217 (301)
96 cd03260 ABC_PstB_phosphate_tra 100.0 9.8E-39 2.1E-43 348.8 23.8 215 604-842 1-225 (227)
97 cd03266 ABC_NatA_sodium_export 100.0 1E-38 2.2E-43 346.5 23.5 215 604-839 2-218 (218)
98 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-38 2.5E-43 346.1 23.4 209 604-834 1-217 (218)
99 cd03234 ABCG_White The White s 100.0 2.6E-38 5.7E-43 344.9 26.1 221 604-839 4-226 (226)
100 COG4525 TauB ABC-type taurine 100.0 7.5E-39 1.6E-43 314.1 19.4 215 604-842 4-220 (259)
101 cd03268 ABC_BcrA_bacitracin_re 100.0 1.4E-38 3.1E-43 342.7 23.3 207 604-839 1-208 (208)
102 cd03256 ABC_PhnC_transporter A 100.0 1.1E-38 2.3E-43 352.2 22.8 218 604-842 1-230 (241)
103 PRK13637 cbiO cobalt transport 100.0 1.6E-38 3.4E-43 357.7 24.5 219 604-842 3-230 (287)
104 cd03263 ABC_subfamily_A The AB 100.0 1.7E-38 3.6E-43 345.4 23.3 215 604-842 1-217 (220)
105 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.5E-38 3.2E-43 355.1 23.1 204 627-842 35-246 (269)
106 cd03226 ABC_cobalt_CbiO_domain 100.0 1.3E-38 2.8E-43 342.0 21.3 203 606-836 2-205 (205)
107 cd03258 ABC_MetN_methionine_tr 100.0 2.6E-38 5.6E-43 346.9 24.1 217 604-841 2-225 (233)
108 PRK13651 cobalt transporter AT 100.0 2.4E-38 5.2E-43 357.6 24.0 219 604-842 3-250 (305)
109 PRK09493 glnQ glutamine ABC tr 100.0 4.3E-38 9.2E-43 346.7 25.4 215 604-842 2-221 (240)
110 PRK11629 lolD lipoprotein tran 100.0 7E-38 1.5E-42 343.2 26.9 217 603-841 5-229 (233)
111 PRK13647 cbiO cobalt transport 100.0 3.2E-38 7E-43 353.1 24.6 215 603-841 4-222 (274)
112 cd03292 ABC_FtsE_transporter F 100.0 2.9E-38 6.3E-43 342.1 23.3 207 604-834 1-213 (214)
113 cd03224 ABC_TM1139_LivF_branch 100.0 2E-38 4.4E-43 345.4 22.2 211 604-841 1-216 (222)
114 PRK11264 putative amino-acid A 100.0 3.7E-38 8E-43 349.6 24.6 214 604-841 4-228 (250)
115 TIGR02673 FtsE cell division A 100.0 3.3E-38 7.1E-43 341.5 23.7 205 604-831 2-212 (214)
116 PRK13643 cbiO cobalt transport 100.0 3.1E-38 6.7E-43 355.6 24.3 218 604-842 2-229 (288)
117 PRK11248 tauB taurine transpor 100.0 6.5E-38 1.4E-42 346.8 26.4 212 604-841 2-215 (255)
118 TIGR02315 ABC_phnC phosphonate 100.0 1.5E-38 3.2E-43 351.3 21.3 218 604-842 2-231 (243)
119 COG4175 ProV ABC-type proline/ 100.0 1E-38 2.2E-43 336.0 18.8 205 627-843 39-251 (386)
120 PRK11831 putative ABC transpor 100.0 5.4E-38 1.2E-42 350.9 25.5 216 603-842 7-229 (269)
121 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.3E-38 9.2E-43 347.0 24.3 214 604-841 1-220 (242)
122 PRK13634 cbiO cobalt transport 100.0 3.5E-38 7.5E-43 355.5 23.7 218 604-842 3-231 (290)
123 COG4559 ABC-type hemin transpo 100.0 2.7E-38 5.8E-43 315.2 19.3 217 604-843 2-227 (259)
124 PRK15079 oligopeptide ABC tran 100.0 8.9E-38 1.9E-42 356.2 26.4 230 603-842 8-247 (331)
125 PRK13631 cbiO cobalt transport 100.0 5.8E-38 1.3E-42 356.5 24.8 219 603-842 21-261 (320)
126 PRK10908 cell division protein 100.0 8.8E-38 1.9E-42 339.9 24.9 209 604-836 2-216 (222)
127 cd03264 ABC_drug_resistance_li 100.0 6.2E-38 1.3E-42 338.5 23.3 209 604-839 1-211 (211)
128 PRK10895 lipopolysaccharide AB 100.0 5.5E-38 1.2E-42 346.1 23.4 215 604-842 4-222 (241)
129 cd03262 ABC_HisP_GlnQ_permease 100.0 6.5E-38 1.4E-42 339.1 23.0 207 604-834 1-212 (213)
130 TIGR00972 3a0107s01c2 phosphat 100.0 1E-37 2.3E-42 345.0 25.0 214 604-841 2-227 (247)
131 COG4181 Predicted ABC-type tra 100.0 2.9E-38 6.2E-43 303.5 17.5 212 604-837 7-226 (228)
132 PRK13650 cbiO cobalt transport 100.0 6.7E-38 1.4E-42 351.5 23.6 217 603-842 4-225 (279)
133 PRK10619 histidine/lysine/argi 100.0 1.4E-37 3E-42 345.9 25.7 215 603-842 5-237 (257)
134 PRK11247 ssuB aliphatic sulfon 100.0 1E-37 2.2E-42 344.3 24.4 206 603-841 12-218 (257)
135 PRK13636 cbiO cobalt transport 100.0 8.8E-38 1.9E-42 351.3 24.3 216 603-842 5-227 (283)
136 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.8E-37 3.9E-42 340.6 26.1 212 604-841 2-216 (236)
137 cd03257 ABC_NikE_OppD_transpor 100.0 1.1E-37 2.5E-42 341.0 24.2 217 604-839 2-228 (228)
138 PRK13646 cbiO cobalt transport 100.0 1E-37 2.2E-42 351.4 24.2 218 604-842 3-231 (286)
139 PRK10070 glycine betaine trans 100.0 1.1E-37 2.4E-42 360.9 24.7 204 627-842 39-250 (400)
140 cd03235 ABC_Metallic_Cations A 100.0 6.6E-38 1.4E-42 338.8 21.3 209 606-839 2-213 (213)
141 COG4988 CydD ABC-type transpor 100.0 5.3E-38 1.1E-42 361.0 21.6 215 600-843 317-540 (559)
142 TIGR02211 LolD_lipo_ex lipopro 100.0 2E-37 4.4E-42 337.1 25.0 211 604-836 2-220 (221)
143 PRK13644 cbiO cobalt transport 100.0 9.6E-38 2.1E-42 349.3 23.0 214 604-842 2-220 (274)
144 PRK11124 artP arginine transpo 100.0 1.6E-37 3.5E-42 342.5 24.4 214 604-842 3-226 (242)
145 PRK11614 livF leucine/isoleuci 100.0 1E-37 2.2E-42 343.0 22.6 213 603-842 5-222 (237)
146 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-37 2.3E-42 336.8 21.9 204 606-831 2-209 (211)
147 PRK13652 cbiO cobalt transport 100.0 1.7E-37 3.7E-42 348.1 24.3 215 604-842 4-223 (277)
148 PRK13641 cbiO cobalt transport 100.0 2.1E-37 4.6E-42 348.9 25.0 220 603-842 2-230 (287)
149 PRK14247 phosphate ABC transpo 100.0 2.7E-37 5.9E-42 342.5 25.3 218 603-842 3-230 (250)
150 TIGR03740 galliderm_ABC gallid 100.0 3.5E-37 7.6E-42 335.5 25.7 210 604-843 1-210 (223)
151 TIGR03415 ABC_choXWV_ATP choli 100.0 2.1E-37 4.5E-42 356.0 24.8 205 627-843 35-251 (382)
152 PRK14273 phosphate ABC transpo 100.0 2.7E-37 5.9E-42 343.1 25.0 215 603-841 7-233 (254)
153 PRK11300 livG leucine/isoleuci 100.0 2.3E-37 4.9E-42 344.4 24.2 218 603-842 5-239 (255)
154 PRK13548 hmuV hemin importer A 100.0 2.3E-37 5E-42 343.6 24.1 214 604-842 3-226 (258)
155 PRK14268 phosphate ABC transpo 100.0 4.2E-37 9.1E-42 342.0 26.2 215 602-841 11-237 (258)
156 TIGR03005 ectoine_ehuA ectoine 100.0 3.4E-37 7.3E-42 342.0 25.3 214 604-841 1-231 (252)
157 COG0444 DppD ABC-type dipeptid 100.0 3.5E-37 7.6E-42 332.3 24.2 225 604-842 2-239 (316)
158 PRK14267 phosphate ABC transpo 100.0 3.3E-37 7.1E-42 342.5 24.8 218 603-842 4-233 (253)
159 TIGR01978 sufC FeS assembly AT 100.0 4.3E-37 9.4E-42 339.8 25.6 219 604-841 1-229 (243)
160 PRK11022 dppD dipeptide transp 100.0 6.4E-37 1.4E-41 349.3 27.4 224 604-842 4-239 (326)
161 KOG0057 Mitochondrial Fe/S clu 100.0 4E-38 8.7E-43 354.9 17.0 215 599-843 347-571 (591)
162 PRK13635 cbiO cobalt transport 100.0 3E-37 6.6E-42 345.9 24.1 216 603-842 5-225 (279)
163 TIGR03411 urea_trans_UrtD urea 100.0 3.6E-37 7.9E-42 339.9 24.3 216 604-842 3-227 (242)
164 PRK09473 oppD oligopeptide tra 100.0 4.4E-37 9.6E-42 350.8 25.7 225 603-842 12-247 (330)
165 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.4E-37 7.3E-42 332.7 23.2 209 604-839 1-211 (211)
166 PRK13638 cbiO cobalt transport 100.0 3.3E-37 7.3E-42 345.2 24.0 214 604-842 2-221 (271)
167 PRK11231 fecE iron-dicitrate t 100.0 2.8E-37 6.2E-42 343.0 23.2 218 604-843 3-224 (255)
168 PRK13639 cbiO cobalt transport 100.0 3.9E-37 8.4E-42 344.9 24.1 215 604-842 2-222 (275)
169 TIGR02769 nickel_nikE nickel i 100.0 5.1E-37 1.1E-41 342.5 24.9 224 604-842 3-236 (265)
170 PRK09984 phosphonate/organopho 100.0 4.1E-37 8.9E-42 343.1 24.1 221 603-843 4-239 (262)
171 PRK11308 dppF dipeptide transp 100.0 8.3E-37 1.8E-41 348.1 27.0 226 603-842 5-240 (327)
172 cd03233 ABC_PDR_domain1 The pl 100.0 6.2E-37 1.3E-41 327.2 24.4 196 603-839 3-202 (202)
173 PRK10575 iron-hydroxamate tran 100.0 3.8E-37 8.2E-42 343.6 23.5 219 603-843 11-234 (265)
174 PRK13649 cbiO cobalt transport 100.0 4.7E-37 1E-41 345.9 24.2 218 604-842 3-230 (280)
175 PRK10744 pstB phosphate transp 100.0 6.7E-37 1.5E-41 340.8 24.8 219 600-842 10-240 (260)
176 TIGR03410 urea_trans_UrtE urea 100.0 4.2E-37 9.1E-42 336.7 22.8 212 604-843 1-218 (230)
177 PRK14242 phosphate transporter 100.0 8.6E-37 1.9E-41 339.1 25.6 220 602-841 5-232 (253)
178 PRK14241 phosphate transporter 100.0 9.1E-37 2E-41 339.6 25.8 218 603-842 4-238 (258)
179 PRK10253 iron-enterobactin tra 100.0 4.9E-37 1.1E-41 342.7 23.6 220 602-843 6-230 (265)
180 PRK14245 phosphate ABC transpo 100.0 9.2E-37 2E-41 338.1 25.5 220 603-842 3-230 (250)
181 TIGR03873 F420-0_ABC_ATP propo 100.0 4.8E-37 1E-41 341.4 23.1 218 604-843 2-223 (256)
182 PRK13632 cbiO cobalt transport 100.0 6.2E-37 1.3E-41 342.8 24.0 216 603-842 7-227 (271)
183 PRK14256 phosphate ABC transpo 100.0 1.7E-36 3.7E-41 336.3 27.3 222 602-842 3-232 (252)
184 cd03232 ABC_PDR_domain2 The pl 100.0 8.8E-37 1.9E-41 323.5 23.8 190 603-839 3-192 (192)
185 PRK10584 putative ABC transpor 100.0 1.2E-36 2.5E-41 332.7 25.5 213 603-837 6-226 (228)
186 TIGR01277 thiQ thiamine ABC tr 100.0 9.4E-37 2E-41 329.4 24.2 210 604-840 1-212 (213)
187 PRK13549 xylose transporter AT 100.0 7E-37 1.5E-41 373.0 26.1 222 603-844 5-230 (506)
188 PRK15093 antimicrobial peptide 100.0 1.5E-36 3.3E-41 347.6 26.9 226 604-842 4-244 (330)
189 cd03267 ABC_NatA_like Similar 100.0 9E-37 1.9E-41 334.5 23.9 201 627-839 32-236 (236)
190 PRK13640 cbiO cobalt transport 100.0 6.7E-37 1.4E-41 344.0 23.3 218 603-842 5-228 (282)
191 TIGR00968 3a0106s01 sulfate AB 100.0 1.2E-36 2.6E-41 334.0 24.5 214 604-842 1-216 (237)
192 cd03300 ABC_PotA_N PotA is an 100.0 1.7E-36 3.8E-41 331.7 25.6 213 604-841 1-215 (232)
193 PRK13648 cbiO cobalt transport 100.0 1.2E-36 2.6E-41 340.3 24.7 216 603-842 7-227 (269)
194 PRK14235 phosphate transporter 100.0 2.2E-36 4.7E-41 337.6 26.6 217 602-841 18-246 (267)
195 COG4987 CydC ABC-type transpor 100.0 1.2E-37 2.7E-42 350.9 16.2 213 603-843 336-558 (573)
196 PRK13547 hmuV hemin importer A 100.0 9.2E-37 2E-41 339.7 23.1 220 604-843 2-241 (272)
197 TIGR00958 3a01208 Conjugate Tr 100.0 1.9E-36 4.1E-41 382.4 29.0 213 601-842 476-698 (711)
198 PRK13633 cobalt transporter AT 100.0 8.9E-37 1.9E-41 342.9 23.1 220 603-842 4-229 (280)
199 PRK11144 modC molybdate transp 100.0 9.4E-37 2E-41 352.1 23.8 191 634-842 16-214 (352)
200 PRK14269 phosphate ABC transpo 100.0 1.9E-36 4E-41 334.6 25.0 215 604-841 3-225 (246)
201 PRK14237 phosphate transporter 100.0 2.8E-36 6.2E-41 336.6 26.8 223 600-842 17-247 (267)
202 PRK14259 phosphate ABC transpo 100.0 1.3E-36 2.9E-41 339.4 24.1 216 602-842 12-249 (269)
203 PRK14250 phosphate ABC transpo 100.0 1.1E-36 2.5E-41 335.0 23.1 210 603-842 3-217 (241)
204 TIGR02142 modC_ABC molybdenum 100.0 1.2E-36 2.6E-41 351.9 24.2 195 634-842 15-217 (354)
205 PRK13645 cbiO cobalt transport 100.0 1.5E-36 3.2E-41 342.9 24.5 221 602-842 5-236 (289)
206 TIGR01184 ntrCD nitrate transp 100.0 1E-36 2.2E-41 332.7 22.2 198 632-841 1-199 (230)
207 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.4E-36 5.1E-41 382.2 28.7 211 601-842 449-669 (686)
208 COG4598 HisP ABC-type histidin 100.0 1.3E-37 2.9E-42 300.7 12.9 215 604-842 7-237 (256)
209 PRK10771 thiQ thiamine transpo 100.0 1.7E-36 3.8E-41 331.9 23.5 212 604-842 2-215 (232)
210 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-36 5.5E-41 320.3 24.0 190 603-839 3-194 (194)
211 cd03299 ABC_ModC_like Archeal 100.0 2.8E-36 6.1E-41 330.5 25.2 213 604-842 1-215 (235)
212 PRK11174 cysteine/glutathione 100.0 8.3E-37 1.8E-41 380.6 23.7 211 602-842 348-568 (588)
213 TIGR03608 L_ocin_972_ABC putat 100.0 1.6E-36 3.5E-41 326.4 22.7 189 629-829 11-206 (206)
214 PRK14274 phosphate ABC transpo 100.0 3.2E-36 6.8E-41 335.4 25.0 220 603-842 12-239 (259)
215 PRK14270 phosphate ABC transpo 100.0 3.3E-36 7.3E-41 333.8 25.1 216 603-842 4-231 (251)
216 PRK15112 antimicrobial peptide 100.0 2.2E-36 4.7E-41 337.6 23.6 225 603-842 4-235 (267)
217 cd03297 ABC_ModC_molybdenum_tr 100.0 2.8E-36 6.2E-41 326.1 23.6 191 634-839 16-214 (214)
218 PRK14239 phosphate transporter 100.0 4.3E-36 9.4E-41 333.5 25.7 216 603-842 5-232 (252)
219 PRK14240 phosphate transporter 100.0 5.5E-36 1.2E-40 332.0 26.3 215 603-841 3-229 (250)
220 PRK13642 cbiO cobalt transport 100.0 2.4E-36 5.2E-41 338.9 23.6 217 603-842 4-225 (277)
221 PRK14260 phosphate ABC transpo 100.0 3.7E-36 8E-41 334.6 24.8 217 603-842 7-239 (259)
222 PRK10762 D-ribose transporter 100.0 3.1E-36 6.7E-41 366.9 25.8 220 603-844 4-228 (501)
223 PRK14257 phosphate ABC transpo 100.0 5.4E-36 1.2E-40 341.3 26.0 222 602-842 79-309 (329)
224 TIGR01193 bacteriocin_ABC ABC- 100.0 7.7E-36 1.7E-40 378.8 30.2 212 601-841 471-692 (708)
225 COG1129 MglA ABC-type sugar tr 100.0 3.7E-35 8E-40 337.6 32.8 202 632-842 275-486 (500)
226 PRK14262 phosphate ABC transpo 100.0 4.8E-36 1E-40 332.5 24.8 220 603-842 3-230 (250)
227 PRK14244 phosphate ABC transpo 100.0 5.9E-36 1.3E-40 331.8 25.2 219 604-841 6-232 (251)
228 COG1132 MdlB ABC-type multidru 100.0 4.6E-37 9.9E-42 380.6 17.9 216 600-842 325-548 (567)
229 PRK14253 phosphate ABC transpo 100.0 6.6E-36 1.4E-40 331.2 25.3 219 603-841 3-228 (249)
230 PRK14236 phosphate transporter 100.0 7.7E-36 1.7E-40 334.1 26.0 217 602-842 24-252 (272)
231 PRK14272 phosphate ABC transpo 100.0 7.1E-36 1.5E-40 331.7 25.5 217 603-842 4-232 (252)
232 PRK11701 phnK phosphonate C-P 100.0 5.5E-36 1.2E-40 333.3 24.6 216 603-842 6-237 (258)
233 PRK14258 phosphate ABC transpo 100.0 7.4E-36 1.6E-40 332.4 25.5 222 603-842 7-241 (261)
234 TIGR02982 heterocyst_DevA ABC 100.0 6.4E-36 1.4E-40 324.7 24.0 211 604-835 2-219 (220)
235 PRK09700 D-allose transporter 100.0 3.9E-36 8.4E-41 367.2 24.9 219 603-843 5-231 (510)
236 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.8E-36 2.1E-40 378.4 28.9 212 601-842 475-696 (710)
237 PRK14271 phosphate ABC transpo 100.0 8.8E-36 1.9E-40 333.5 24.9 220 603-842 21-247 (276)
238 PRK13543 cytochrome c biogenes 100.0 8.1E-36 1.8E-40 322.0 23.6 201 603-830 11-211 (214)
239 PRK14249 phosphate ABC transpo 100.0 1E-35 2.2E-40 329.9 25.1 220 603-842 4-231 (251)
240 PRK10418 nikD nickel transport 100.0 9.5E-36 2.1E-40 330.4 24.6 214 603-842 4-226 (254)
241 TIGR02770 nickel_nikD nickel i 100.0 4.3E-36 9.2E-41 328.2 21.5 202 631-842 1-211 (230)
242 COG4161 ArtP ABC-type arginine 100.0 2.1E-36 4.6E-41 287.0 16.2 216 603-842 2-226 (242)
243 TIGR03375 type_I_sec_LssB type 100.0 5.3E-35 1.1E-39 370.4 34.5 213 601-841 461-683 (694)
244 PRK10419 nikE nickel transport 100.0 1.3E-35 2.7E-40 331.4 25.2 225 604-843 4-238 (268)
245 PRK14275 phosphate ABC transpo 100.0 1.5E-35 3.2E-40 333.5 25.9 217 602-842 38-266 (286)
246 PRK15056 manganese/iron transp 100.0 7.7E-36 1.7E-40 334.1 23.4 219 603-843 6-227 (272)
247 PRK11160 cysteine/glutathione 100.0 3.7E-36 7.9E-41 371.6 22.7 213 601-841 336-557 (574)
248 PRK14251 phosphate ABC transpo 100.0 1.7E-35 3.6E-40 328.4 25.6 215 603-841 4-230 (251)
249 PRK14261 phosphate ABC transpo 100.0 1.7E-35 3.6E-40 328.6 25.5 219 603-841 6-232 (253)
250 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-35 2.4E-40 362.7 26.4 220 604-843 2-227 (500)
251 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-35 2.9E-40 322.2 23.9 192 627-839 33-224 (224)
252 PRK14248 phosphate ABC transpo 100.0 2.2E-35 4.7E-40 330.2 26.1 216 603-842 21-248 (268)
253 PRK14265 phosphate ABC transpo 100.0 1.9E-35 4E-40 330.8 25.4 217 601-842 18-254 (274)
254 PRK10247 putative ABC transpor 100.0 8.1E-36 1.8E-40 324.7 21.9 210 603-840 7-221 (225)
255 PRK15439 autoinducer 2 ABC tra 100.0 1E-35 2.2E-40 362.5 25.2 212 603-843 11-226 (510)
256 PRK13538 cytochrome c biogenes 100.0 1.1E-35 2.3E-40 318.8 22.4 199 604-829 2-202 (204)
257 PRK14254 phosphate ABC transpo 100.0 3.3E-35 7.2E-40 330.2 27.4 214 602-841 38-264 (285)
258 PRK14255 phosphate ABC transpo 100.0 2.6E-35 5.7E-40 327.0 26.3 215 603-841 5-231 (252)
259 cd03231 ABC_CcmA_heme_exporter 100.0 9.6E-36 2.1E-40 318.2 21.8 196 604-829 1-198 (201)
260 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-36 6.1E-41 331.7 17.9 210 604-841 1-220 (237)
261 PRK14263 phosphate ABC transpo 100.0 2.3E-35 5E-40 327.7 25.3 220 602-842 7-241 (261)
262 CHL00131 ycf16 sulfate ABC tra 100.0 4.1E-35 8.9E-40 325.6 27.3 221 603-842 7-237 (252)
263 COG1123 ATPase components of v 100.0 1.5E-35 3.3E-40 342.8 24.6 224 603-842 5-240 (539)
264 PRK11176 lipid transporter ATP 100.0 9.5E-36 2.1E-40 370.9 24.0 215 601-842 339-563 (582)
265 TIGR01846 type_I_sec_HlyB type 100.0 1.9E-35 4E-40 374.2 26.8 214 601-842 453-676 (694)
266 PRK14243 phosphate transporter 100.0 2E-35 4.3E-40 329.3 23.7 218 603-841 10-243 (264)
267 PRK10790 putative multidrug tr 100.0 7.8E-36 1.7E-40 371.8 22.8 212 601-842 338-559 (592)
268 PRK14238 phosphate transporter 100.0 2.6E-35 5.7E-40 329.4 24.6 215 603-841 24-250 (271)
269 PRK11288 araG L-arabinose tran 100.0 2E-35 4.4E-40 359.8 25.7 217 603-841 4-224 (501)
270 KOG0056 Heavy metal exporter H 100.0 7.6E-37 1.6E-41 335.2 11.4 220 597-841 531-756 (790)
271 PRK10982 galactose/methyl gala 100.0 1.9E-35 4E-40 359.5 24.6 206 629-843 11-220 (491)
272 PRK14246 phosphate ABC transpo 100.0 4.3E-35 9.3E-40 324.7 24.9 217 603-842 10-237 (257)
273 TIGR02323 CP_lyasePhnK phospho 100.0 3.5E-35 7.7E-40 326.2 24.3 215 603-841 3-233 (253)
274 PRK13546 teichoic acids export 100.0 7.7E-35 1.7E-39 322.5 26.8 220 602-843 3-229 (264)
275 COG4618 ArpD ABC-type protease 100.0 3.6E-36 7.8E-41 335.5 16.1 226 592-842 323-556 (580)
276 cd03230 ABC_DR_subfamily_A Thi 100.0 2.5E-35 5.4E-40 307.0 21.4 170 604-834 1-172 (173)
277 cd03251 ABCC_MsbA MsbA is an e 100.0 5.6E-36 1.2E-40 328.8 16.9 210 604-841 1-220 (234)
278 PRK14266 phosphate ABC transpo 100.0 4.7E-35 1E-39 324.5 23.9 220 603-842 3-230 (250)
279 cd03245 ABCC_bacteriocin_expor 100.0 1.4E-35 2.9E-40 322.6 19.1 210 603-839 2-220 (220)
280 COG4604 CeuD ABC-type enteroch 100.0 1.5E-36 3.2E-41 298.8 10.3 217 604-843 2-222 (252)
281 PRK13539 cytochrome c biogenes 100.0 3.4E-35 7.4E-40 315.5 21.7 197 604-830 3-199 (207)
282 COG1129 MglA ABC-type sugar tr 100.0 3.8E-35 8.3E-40 337.5 23.3 219 603-843 8-232 (500)
283 PRK09580 sufC cysteine desulfu 100.0 8.3E-35 1.8E-39 322.5 25.2 220 604-842 2-231 (248)
284 TIGR01166 cbiO cobalt transpor 100.0 3.1E-35 6.7E-40 311.8 20.5 179 628-816 4-188 (190)
285 cd03289 ABCC_CFTR2 The CFTR su 100.0 2E-35 4.3E-40 328.1 19.8 212 603-843 2-222 (275)
286 PRK03695 vitamin B12-transport 100.0 5.2E-35 1.1E-39 322.8 22.8 198 631-842 11-218 (248)
287 TIGR01189 ccmA heme ABC export 100.0 4.7E-35 1E-39 312.4 21.7 195 604-828 1-197 (198)
288 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.3E-35 2.7E-40 326.8 17.9 211 604-841 1-221 (238)
289 cd03254 ABCC_Glucan_exporter_l 100.0 1.3E-35 2.7E-40 324.9 17.7 210 603-841 2-221 (229)
290 PRK14252 phosphate ABC transpo 100.0 1.4E-34 2.9E-39 323.2 26.0 217 601-841 14-244 (265)
291 TIGR03269 met_CoM_red_A2 methy 100.0 6.9E-35 1.5E-39 357.1 25.2 216 604-842 1-254 (520)
292 TIGR02324 CP_lyasePhnL phospho 100.0 9.7E-35 2.1E-39 316.6 23.3 210 604-830 2-223 (224)
293 cd03229 ABC_Class3 This class 100.0 4.5E-35 9.8E-40 306.6 19.7 170 604-831 1-176 (178)
294 PRK14264 phosphate ABC transpo 100.0 1.8E-34 3.8E-39 327.5 26.0 223 602-842 44-285 (305)
295 COG4148 ModC ABC-type molybdat 100.0 6.3E-36 1.4E-40 309.6 12.2 191 634-842 16-214 (352)
296 TIGR01842 type_I_sec_PrtD type 100.0 3.2E-35 6.9E-40 362.0 20.8 216 602-842 315-538 (544)
297 PRK10261 glutathione transport 100.0 7.6E-35 1.6E-39 361.6 24.1 220 603-842 12-254 (623)
298 PRK00635 excinuclease ABC subu 100.0 1.1E-33 2.4E-38 367.3 35.9 136 700-843 759-903 (1809)
299 PRK09544 znuC high-affinity zi 100.0 8.4E-35 1.8E-39 320.7 21.8 199 603-842 4-205 (251)
300 TIGR02203 MsbA_lipidA lipid A 100.0 1.9E-34 4.1E-39 358.9 27.8 215 601-842 328-552 (571)
301 PTZ00265 multidrug resistance 100.0 8.1E-35 1.8E-39 386.6 25.9 215 602-832 381-655 (1466)
302 PRK13540 cytochrome c biogenes 100.0 1E-34 2.2E-39 310.1 21.6 194 604-827 2-197 (200)
303 PRK13545 tagH teichoic acids e 100.0 2E-34 4.4E-39 335.0 25.5 209 603-843 21-229 (549)
304 cd03215 ABC_Carb_Monos_II This 100.0 8.1E-35 1.7E-39 305.9 19.9 170 604-834 5-181 (182)
305 cd03244 ABCC_MRP_domain2 Domai 100.0 5.8E-35 1.3E-39 317.8 19.4 209 603-840 2-220 (221)
306 COG0488 Uup ATPase components 100.0 1.3E-33 2.9E-38 334.8 32.5 199 601-840 319-519 (530)
307 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.1E-34 4.6E-39 307.4 22.7 184 604-841 1-189 (200)
308 cd03253 ABCC_ATM1_transporter 100.0 4.7E-35 1E-39 321.9 18.2 209 604-841 1-219 (236)
309 PRK15134 microcin C ABC transp 100.0 2.2E-34 4.8E-39 353.0 25.7 222 603-842 5-242 (529)
310 cd03246 ABCC_Protease_Secretio 100.0 6.9E-35 1.5E-39 303.8 18.0 169 604-834 1-172 (173)
311 cd03248 ABCC_TAP TAP, the Tran 100.0 4.1E-35 8.8E-40 320.1 17.0 211 602-834 10-225 (226)
312 PRK13657 cyclic beta-1,2-gluca 100.0 1.3E-34 2.9E-39 360.2 23.6 211 602-841 333-553 (588)
313 PRK00349 uvrA excinuclease ABC 100.0 1E-33 2.2E-38 355.4 31.2 123 704-842 792-923 (943)
314 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-34 2.4E-39 303.8 18.7 176 604-839 1-178 (178)
315 TIGR03771 anch_rpt_ABC anchore 100.0 2.6E-34 5.7E-39 312.1 21.4 195 637-843 1-198 (223)
316 TIGR02868 CydC thiol reductant 100.0 7.8E-35 1.7E-39 358.3 19.5 189 601-815 332-529 (529)
317 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.7E-34 7.9E-39 308.0 21.1 200 602-841 5-207 (207)
318 COG4619 ABC-type uncharacteriz 100.0 3.9E-35 8.4E-40 281.1 11.9 195 627-835 14-212 (223)
319 COG0396 sufC Cysteine desulfur 100.0 1.6E-33 3.5E-38 286.3 24.3 229 603-855 3-238 (251)
320 PRK10789 putative multidrug tr 100.0 3.8E-34 8.2E-39 353.7 23.6 214 601-842 311-534 (569)
321 TIGR01192 chvA glucan exporter 100.0 4.6E-34 1E-38 353.3 23.9 212 602-842 333-554 (585)
322 COG3845 ABC-type uncharacteriz 100.0 4E-34 8.7E-39 320.8 21.0 216 603-840 4-223 (501)
323 cd03223 ABCD_peroxisomal_ALDP 100.0 5E-34 1.1E-38 294.6 20.1 165 604-834 1-165 (166)
324 cd03214 ABC_Iron-Siderophores_ 100.0 2.2E-34 4.7E-39 302.1 17.1 175 606-839 2-180 (180)
325 COG1119 ModF ABC-type molybden 100.0 2.6E-34 5.5E-39 296.3 17.0 217 602-840 30-256 (257)
326 PRK10938 putative molybdenum t 100.0 2.6E-34 5.6E-39 349.7 20.1 206 604-842 4-220 (490)
327 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-34 4.1E-39 320.4 17.2 212 602-842 18-239 (257)
328 TIGR02857 CydD thiol reductant 100.0 1.6E-34 3.5E-39 355.5 17.0 201 602-829 319-529 (529)
329 cd03216 ABC_Carb_Monos_I This 100.0 1.4E-33 3E-38 290.4 20.4 158 604-837 1-162 (163)
330 PRK13541 cytochrome c biogenes 100.0 1.7E-33 3.8E-38 299.4 21.2 191 604-826 2-192 (195)
331 COG4674 Uncharacterized ABC-ty 100.0 3.4E-34 7.5E-39 281.7 14.0 216 603-842 5-231 (249)
332 TIGR01187 potA spermidine/putr 100.0 1.1E-33 2.4E-38 323.3 20.0 184 647-842 1-186 (325)
333 TIGR02204 MsbA_rel ABC transpo 100.0 1.1E-33 2.4E-38 352.3 21.3 214 602-842 336-559 (576)
334 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-33 4.2E-38 301.6 19.4 194 604-831 1-202 (204)
335 PRK10522 multidrug transporter 100.0 2.2E-33 4.7E-38 345.6 22.4 208 602-840 321-532 (547)
336 TIGR00630 uvra excinuclease AB 100.0 2.4E-32 5.2E-37 342.3 32.0 124 703-842 789-921 (924)
337 COG4586 ABC-type uncharacteriz 100.0 5.9E-34 1.3E-38 294.7 14.2 202 629-842 37-242 (325)
338 cd03228 ABCC_MRP_Like The MRP 100.0 1.7E-33 3.7E-38 292.6 17.7 166 604-831 1-169 (171)
339 cd03290 ABCC_SUR1_N The SUR do 100.0 3.3E-33 7.1E-38 303.1 20.6 187 629-831 14-216 (218)
340 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.1E-33 1.7E-37 303.4 22.2 200 631-855 9-216 (246)
341 PRK10535 macrolide transporter 100.0 2.1E-32 4.5E-37 340.9 27.4 219 603-843 4-229 (648)
342 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.8E-32 6E-37 304.0 24.1 202 598-842 34-243 (282)
343 COG5265 ATM1 ABC-type transpor 100.0 8.2E-34 1.8E-38 309.7 11.1 216 599-841 258-481 (497)
344 KOG0059 Lipid exporter ABCA1 a 100.0 4.1E-31 9E-36 337.6 37.1 223 603-853 564-790 (885)
345 PRK15177 Vi polysaccharide exp 100.0 2E-32 4.4E-37 294.5 20.0 186 631-842 2-188 (213)
346 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.8E-32 3.9E-37 337.5 21.9 210 602-837 336-550 (555)
347 COG4608 AppF ABC-type oligopep 100.0 2.1E-32 4.6E-37 289.3 19.1 189 603-842 4-195 (268)
348 PRK15064 ABC transporter ATP-b 100.0 4.9E-32 1.1E-36 332.4 23.9 206 604-842 2-238 (530)
349 PRK11819 putative ABC transpor 100.0 6.6E-32 1.4E-36 332.1 23.8 207 603-842 6-246 (556)
350 COG4136 ABC-type uncharacteriz 100.0 2.6E-32 5.6E-37 256.4 14.4 191 604-816 3-196 (213)
351 COG1101 PhnK ABC-type uncharac 100.0 3.1E-32 6.7E-37 272.6 14.7 220 627-855 17-251 (263)
352 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.5E-32 1.2E-36 297.8 17.8 192 630-841 15-222 (255)
353 COG4172 ABC-type uncharacteriz 100.0 2.8E-31 6E-36 287.5 21.4 225 603-842 6-243 (534)
354 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-31 4E-36 328.3 22.9 207 603-842 4-244 (552)
355 COG3845 ABC-type uncharacteriz 100.0 5E-30 1.1E-34 288.0 31.6 221 603-843 257-489 (501)
356 cd03222 ABC_RNaseL_inhibitor T 100.0 3.1E-31 6.8E-36 273.6 19.3 156 628-853 12-170 (177)
357 cd03238 ABC_UvrA The excision 100.0 4.7E-31 1E-35 272.0 19.9 154 628-831 7-163 (176)
358 TIGR00954 3a01203 Peroxysomal 100.0 3E-31 6.5E-36 330.7 20.9 200 602-833 450-655 (659)
359 COG1134 TagH ABC-type polysacc 100.0 2.4E-30 5.1E-35 267.8 23.0 227 603-854 3-240 (249)
360 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 9.6E-31 2.1E-35 263.0 18.9 142 604-831 1-142 (144)
361 KOG0927 Predicted transporter 100.0 1.5E-30 3.2E-35 292.4 21.1 202 602-841 388-591 (614)
362 PLN03232 ABC transporter C fam 100.0 1.3E-30 2.8E-35 350.5 23.1 205 602-843 613-825 (1495)
363 PLN03130 ABC transporter C fam 100.0 1.6E-30 3.5E-35 349.1 21.3 204 602-843 613-825 (1622)
364 COG4133 CcmA ABC-type transpor 100.0 1.5E-30 3.3E-35 256.3 15.4 178 627-817 13-192 (209)
365 COG4167 SapF ABC-type antimicr 100.0 5.7E-30 1.2E-34 248.5 16.0 204 628-842 25-235 (267)
366 PRK10636 putative ABC transpor 100.0 1.2E-29 2.7E-34 315.1 22.5 204 604-841 2-231 (638)
367 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.3E-29 9.4E-34 256.1 18.7 151 606-831 2-155 (157)
368 PRK13409 putative ATPase RIL; 100.0 1.8E-29 3.9E-34 308.6 17.7 181 629-831 87-286 (590)
369 PRK11147 ABC transporter ATPas 100.0 7.5E-29 1.6E-33 309.2 22.9 203 604-841 4-238 (635)
370 TIGR00957 MRP_assoc_pro multi 100.0 6.9E-29 1.5E-33 334.3 23.2 204 602-843 635-847 (1522)
371 TIGR01271 CFTR_protein cystic 100.0 3.8E-28 8.3E-33 326.0 24.6 191 629-843 439-633 (1490)
372 COG4107 PhnK ABC-type phosphon 100.0 1.2E-28 2.6E-33 237.4 13.9 211 604-842 7-237 (258)
373 KOG0058 Peptide exporter, ABC 100.0 2.7E-29 5.8E-34 294.3 9.8 108 50-162 584-691 (716)
374 cd03270 ABC_UvrA_I The excisio 100.0 9.2E-28 2E-32 260.6 20.8 197 628-839 7-226 (226)
375 COG0488 Uup ATPase components 100.0 5.1E-28 1.1E-32 287.3 18.7 206 603-841 3-235 (530)
376 PLN03073 ABC transporter F fam 99.9 7E-28 1.5E-32 299.6 15.4 212 602-841 176-426 (718)
377 PTZ00243 ABC transporter; Prov 99.9 1.9E-27 4E-32 319.3 20.3 190 628-842 672-866 (1560)
378 cd03271 ABC_UvrA_II The excisi 99.9 5.8E-27 1.2E-31 256.0 19.7 195 631-841 10-261 (261)
379 KOG0054 Multidrug resistance-a 99.9 4.3E-27 9.2E-32 298.5 21.2 206 601-843 516-728 (1381)
380 COG4778 PhnL ABC-type phosphon 99.9 1.5E-27 3.2E-32 229.3 12.1 213 603-831 4-227 (235)
381 PF00005 ABC_tran: ABC transpo 99.9 2.1E-27 4.6E-32 238.0 12.9 134 632-784 1-137 (137)
382 cd03278 ABC_SMC_barmotin Barmo 99.9 1.3E-26 2.8E-31 245.4 13.2 168 633-833 14-192 (197)
383 COG1245 Predicted ATPase, RNas 99.9 5.3E-25 1.1E-29 242.3 25.6 196 632-855 357-556 (591)
384 COG4138 BtuD ABC-type cobalami 99.9 6.6E-27 1.4E-31 225.8 5.8 194 632-843 15-218 (248)
385 COG5265 ATM1 ABC-type transpor 99.9 2.3E-26 4.9E-31 251.7 10.7 147 7-162 324-486 (497)
386 KOG0056 Heavy metal exporter H 99.9 4.7E-26 1E-30 250.7 9.8 147 7-162 599-761 (790)
387 PRK00635 excinuclease ABC subu 99.9 1.2E-22 2.5E-27 265.3 40.6 125 703-842 1660-1792(1809)
388 COG1135 AbcC ABC-type metal io 99.9 3.5E-25 7.6E-30 235.2 11.7 143 13-161 77-230 (339)
389 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.3E-24 1.2E-28 235.3 16.9 188 628-831 14-235 (243)
390 COG2274 SunT ABC-type bacterio 99.9 8.2E-25 1.8E-29 268.4 9.9 106 52-162 591-696 (709)
391 cd03240 ABC_Rad50 The catalyti 99.9 4.4E-24 9.5E-29 227.7 13.1 168 635-834 16-200 (204)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.5E-25 5.3E-30 238.3 2.9 180 627-832 15-205 (212)
393 COG1126 GlnQ ABC-type polar am 99.9 6.5E-24 1.4E-28 214.6 12.9 142 13-161 71-224 (240)
394 KOG0062 ATPase component of AB 99.9 9.2E-23 2E-27 228.8 22.9 203 601-840 360-563 (582)
395 KOG0057 Mitochondrial Fe/S clu 99.9 2.1E-24 4.5E-29 244.5 9.5 105 53-162 470-574 (591)
396 COG4615 PvdE ABC-type sideroph 99.9 6E-23 1.3E-27 222.1 20.3 207 602-840 321-531 (546)
397 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.9E-23 4.1E-28 225.3 15.2 180 633-833 18-210 (213)
398 COG4178 ABC-type uncharacteriz 99.9 2.7E-23 5.9E-28 244.3 16.7 199 601-832 390-589 (604)
399 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.2E-24 1.8E-28 234.3 11.5 179 642-830 25-242 (251)
400 COG0178 UvrA Excinuclease ATPa 99.9 3.3E-21 7.2E-26 226.7 30.9 126 703-843 783-916 (935)
401 COG1132 MdlB ABC-type multidru 99.9 2.2E-23 4.8E-28 258.5 10.4 105 53-162 448-552 (567)
402 COG1131 CcmA ABC-type multidru 99.9 1.6E-22 3.4E-27 227.1 10.4 120 41-166 111-230 (293)
403 COG4555 NatA ABC-type Na+ tran 99.9 5.2E-22 1.1E-26 197.5 10.3 129 27-162 94-222 (245)
404 PRK11174 cysteine/glutathione 99.9 2.8E-22 6.1E-27 250.2 10.7 103 55-162 470-572 (588)
405 COG4988 CydD ABC-type transpor 99.9 9.8E-22 2.1E-26 227.1 10.3 114 44-162 424-543 (559)
406 COG4170 SapD ABC-type antimicr 99.8 2.9E-21 6.3E-26 191.9 11.0 225 605-842 5-244 (330)
407 KOG0927 Predicted transporter 99.8 5.6E-21 1.2E-25 215.7 13.5 213 601-841 73-304 (614)
408 COG1125 OpuBA ABC-type proline 99.8 1.1E-20 2.4E-25 194.7 14.3 138 19-162 82-225 (309)
409 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.5E-20 3.2E-25 199.4 15.3 169 632-831 12-190 (198)
410 TIGR03375 type_I_sec_LssB type 99.8 4.2E-21 9.1E-26 243.7 11.6 142 16-162 536-688 (694)
411 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 4E-21 8.7E-26 243.6 11.3 110 46-162 557-673 (686)
412 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 4.3E-21 9.4E-26 244.5 11.6 142 14-162 548-700 (710)
413 PRK10790 putative multidrug tr 99.8 6.2E-21 1.3E-25 238.2 11.9 142 16-162 412-563 (592)
414 PRK11160 cysteine/glutathione 99.8 7.3E-21 1.6E-25 235.6 12.4 141 17-162 412-562 (574)
415 KOG0060 Long-chain acyl-CoA tr 99.8 4.8E-20 1E-24 209.7 17.7 207 602-834 432-644 (659)
416 COG1122 CbiO ABC-type cobalt t 99.8 9.8E-21 2.1E-25 203.2 11.4 127 30-162 102-228 (235)
417 TIGR02314 ABC_MetN D-methionin 99.8 8.2E-21 1.8E-25 217.0 10.9 117 39-161 113-229 (343)
418 TIGR01193 bacteriocin_ABC ABC- 99.8 7.6E-21 1.6E-25 241.9 11.7 141 16-162 545-697 (708)
419 PRK11176 lipid transporter ATP 99.8 1.2E-20 2.6E-25 235.5 12.0 141 17-162 415-567 (582)
420 COG1120 FepC ABC-type cobalami 99.8 1.2E-20 2.6E-25 202.1 10.2 115 41-161 113-227 (258)
421 TIGR00958 3a01208 Conjugate Tr 99.8 9.9E-21 2.2E-25 239.7 11.2 111 45-162 585-702 (711)
422 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.4E-20 3.1E-25 207.6 10.9 179 644-833 24-235 (247)
423 KOG0066 eIF2-interacting prote 99.8 2.8E-20 6.2E-25 202.5 12.6 201 600-840 583-785 (807)
424 COG3638 ABC-type phosphate/pho 99.8 1.9E-20 4E-25 192.2 9.8 116 41-162 122-237 (258)
425 COG4987 CydC ABC-type transpor 99.8 1.2E-20 2.6E-25 214.1 9.2 114 44-162 441-561 (573)
426 PRK13537 nodulation ABC transp 99.8 1.4E-20 3E-25 213.6 9.6 116 40-162 112-227 (306)
427 COG1124 DppF ABC-type dipeptid 99.8 2.5E-20 5.5E-25 193.0 10.1 112 46-162 120-231 (252)
428 KOG2355 Predicted ABC-type tra 99.8 3E-19 6.4E-24 177.5 15.9 206 602-841 12-232 (291)
429 COG1127 Ttg2A ABC-type transpo 99.8 6.1E-20 1.3E-24 188.9 11.3 144 13-162 79-235 (263)
430 COG1136 SalX ABC-type antimicr 99.8 3.4E-20 7.3E-25 194.7 9.3 108 37-151 112-220 (226)
431 TIGR01188 drrA daunorubicin re 99.8 5.2E-20 1.1E-24 209.3 10.2 115 41-162 99-213 (302)
432 COG3840 ThiQ ABC-type thiamine 99.8 7.8E-20 1.7E-24 178.9 9.9 115 42-162 105-219 (231)
433 PF01061 ABC2_membrane: ABC-2 99.8 7.5E-21 1.6E-25 205.2 2.5 209 929-1143 1-210 (210)
434 PRK11650 ugpC glycerol-3-phosp 99.8 9E-20 1.9E-24 210.3 11.0 118 39-162 107-224 (356)
435 TIGR01846 type_I_sec_HlyB type 99.8 8.8E-20 1.9E-24 231.5 11.7 103 55-162 578-680 (694)
436 TIGR03265 PhnT2 putative 2-ami 99.8 1.1E-19 2.4E-24 209.3 11.0 117 40-162 108-224 (353)
437 TIGR03258 PhnT 2-aminoethylpho 99.8 1.2E-19 2.6E-24 209.3 10.8 118 39-162 110-228 (362)
438 KOG0062 ATPase component of AB 99.8 1E-19 2.3E-24 204.4 9.2 199 602-840 79-279 (582)
439 TIGR01186 proV glycine betaine 99.8 1.8E-19 3.8E-24 207.1 11.1 118 39-162 102-219 (363)
440 cd03261 ABC_Org_Solvent_Resist 99.8 1.6E-19 3.6E-24 198.3 10.1 115 41-161 111-225 (235)
441 COG0444 DppD ABC-type dipeptid 99.8 2.8E-19 6E-24 194.0 11.6 121 39-162 123-243 (316)
442 PRK13637 cbiO cobalt transport 99.8 3.5E-19 7.7E-24 200.8 13.0 117 40-162 116-234 (287)
443 PRK13643 cbiO cobalt transport 99.8 3.2E-19 6.9E-24 201.2 12.2 132 40-178 117-252 (288)
444 PRK13634 cbiO cobalt transport 99.8 3.9E-19 8.4E-24 200.8 12.9 116 40-161 118-234 (290)
445 PRK13536 nodulation factor exp 99.8 1.4E-19 3E-24 207.5 9.2 115 41-162 147-261 (340)
446 PRK11432 fbpC ferric transport 99.8 2.3E-19 4.9E-24 206.3 11.0 117 39-161 109-225 (351)
447 TIGR02203 MsbA_lipidA lipid A 99.8 2.2E-19 4.8E-24 223.9 11.8 141 17-162 404-556 (571)
448 COG4161 ArtP ABC-type arginine 99.8 6E-19 1.3E-23 168.5 11.9 121 30-158 105-226 (242)
449 PRK13657 cyclic beta-1,2-gluca 99.8 2E-19 4.3E-24 224.3 11.1 113 45-162 439-558 (588)
450 PRK11153 metN DL-methionine tr 99.8 2.5E-19 5.5E-24 206.5 10.9 115 41-161 115-229 (343)
451 PRK09473 oppD oligopeptide tra 99.8 2.7E-19 5.9E-24 204.7 10.9 120 40-162 132-251 (330)
452 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 3.2E-19 6.9E-24 190.0 10.5 113 42-162 115-227 (254)
453 COG4618 ArpD ABC-type protease 99.8 2E-19 4.4E-24 202.1 9.0 108 53-164 455-562 (580)
454 TIGR01842 type_I_sec_PrtD type 99.8 3E-19 6.5E-24 220.4 11.3 103 56-162 440-542 (544)
455 TIGR01288 nodI ATP-binding ABC 99.8 2.3E-19 5E-24 204.1 9.5 115 41-162 110-224 (303)
456 PRK11607 potG putrescine trans 99.8 3.5E-19 7.7E-24 206.5 10.8 118 39-162 122-239 (377)
457 PRK10851 sulfate/thiosulfate t 99.8 3.4E-19 7.5E-24 205.3 10.7 117 40-162 110-226 (353)
458 PRK09452 potA putrescine/sperm 99.8 3.5E-19 7.7E-24 206.1 10.8 117 39-161 117-233 (375)
459 PRK11022 dppD dipeptide transp 99.8 3.6E-19 7.9E-24 203.5 10.6 120 40-162 124-243 (326)
460 PRK11000 maltose/maltodextrin 99.8 3.7E-19 8E-24 206.8 10.7 116 41-162 108-223 (369)
461 cd03256 ABC_PhnC_transporter A 99.8 4.9E-19 1.1E-23 195.5 10.9 113 43-161 121-233 (241)
462 cd03294 ABC_Pro_Gly_Bertaine T 99.8 4.2E-19 9.2E-24 198.5 10.5 115 42-162 136-250 (269)
463 PRK11308 dppF dipeptide transp 99.8 5.2E-19 1.1E-23 202.1 10.6 118 39-162 126-244 (327)
464 PRK10789 putative multidrug tr 99.8 5.2E-19 1.1E-23 219.1 11.0 103 55-162 436-538 (569)
465 COG1117 PstB ABC-type phosphat 99.8 4E-19 8.7E-24 178.9 8.0 129 28-161 107-236 (253)
466 cd03296 ABC_CysA_sulfate_impor 99.8 5.9E-19 1.3E-23 194.3 10.2 113 43-161 113-225 (239)
467 PRK15079 oligopeptide ABC tran 99.8 6.1E-19 1.3E-23 201.6 10.5 118 39-162 133-251 (331)
468 COG3839 MalK ABC-type sugar tr 99.8 5.1E-19 1.1E-23 197.0 9.3 129 28-162 95-223 (338)
469 TIGR03522 GldA_ABC_ATP gliding 99.8 4.8E-19 1.1E-23 201.1 9.4 114 41-162 108-221 (301)
470 TIGR01187 potA spermidine/putr 99.8 8E-19 1.7E-23 201.0 11.3 116 41-162 75-190 (325)
471 TIGR02315 ABC_phnC phosphonate 99.8 6.6E-19 1.4E-23 194.6 10.2 112 43-160 122-233 (243)
472 cd03265 ABC_DrrA DrrA is the A 99.8 8.2E-19 1.8E-23 190.7 10.7 114 41-160 106-219 (220)
473 PRK13631 cbiO cobalt transport 99.8 1.2E-18 2.6E-23 198.4 12.1 114 41-161 150-264 (320)
474 COG1116 TauB ABC-type nitrate/ 99.8 7.7E-19 1.7E-23 184.1 9.5 116 28-149 92-207 (248)
475 cd03219 ABC_Mj1267_LivG_branch 99.8 7.9E-19 1.7E-23 193.2 10.2 113 42-161 119-231 (236)
476 PRK13646 cbiO cobalt transport 99.8 1.1E-18 2.3E-23 197.0 11.3 117 40-162 118-235 (286)
477 PRK13650 cbiO cobalt transport 99.8 1.4E-18 3.1E-23 195.2 12.2 115 40-161 114-228 (279)
478 PRK13636 cbiO cobalt transport 99.8 1.4E-18 3.1E-23 195.6 12.2 116 41-162 116-231 (283)
479 cd03259 ABC_Carb_Solutes_like 99.8 7.9E-19 1.7E-23 189.9 9.7 108 42-155 106-213 (213)
480 TIGR03415 ABC_choXWV_ATP choli 99.8 1E-18 2.2E-23 201.7 10.9 118 39-162 137-254 (382)
481 PRK13647 cbiO cobalt transport 99.8 1.5E-18 3.3E-23 194.5 12.1 112 42-160 114-225 (274)
482 cd03239 ABC_SMC_head The struc 99.8 6.5E-18 1.4E-22 175.7 16.0 76 756-833 95-174 (178)
483 TIGR01184 ntrCD nitrate transp 99.8 7.3E-19 1.6E-23 192.1 9.2 113 42-160 90-202 (230)
484 PRK10070 glycine betaine trans 99.8 1.1E-18 2.3E-23 203.0 11.0 116 41-162 139-254 (400)
485 cd03260 ABC_PstB_phosphate_tra 99.8 8.3E-19 1.8E-23 191.7 9.6 112 43-160 116-227 (227)
486 COG4175 ProV ABC-type proline/ 99.8 1.8E-18 3.9E-23 183.6 11.5 135 22-162 116-254 (386)
487 TIGR02770 nickel_nikD nickel i 99.8 1.1E-18 2.4E-23 190.9 10.2 114 42-161 98-214 (230)
488 cd03218 ABC_YhbG The ABC trans 99.8 1.1E-18 2.4E-23 191.4 10.3 113 42-161 109-221 (232)
489 COG1245 Predicted ATPase, RNas 99.8 1.1E-18 2.3E-23 193.0 10.0 169 638-830 96-287 (591)
490 cd03301 ABC_MalK_N The N-termi 99.8 1.2E-18 2.5E-23 188.6 10.2 109 41-155 105-213 (213)
491 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.2E-18 2.5E-23 189.5 10.2 111 42-158 107-219 (220)
492 cd03258 ABC_MetN_methionine_tr 99.8 1.2E-18 2.5E-23 191.3 10.1 114 42-161 116-229 (233)
493 PRK13633 cobalt transporter AT 99.8 1.8E-18 3.8E-23 194.7 11.8 116 40-162 118-233 (280)
494 TIGR01192 chvA glucan exporter 99.8 8.5E-19 1.8E-23 217.5 9.9 103 55-162 456-558 (585)
495 PRK13652 cbiO cobalt transport 99.8 1.5E-18 3.2E-23 195.0 10.8 116 41-162 112-227 (277)
496 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.8E-18 3.9E-23 190.1 11.2 114 42-162 108-221 (236)
497 PRK15093 antimicrobial peptide 99.8 1.3E-18 2.9E-23 199.6 10.6 114 42-161 131-247 (330)
498 PRK09536 btuD corrinoid ABC tr 99.8 1.3E-18 2.7E-23 202.5 10.4 113 42-161 115-227 (402)
499 PRK13648 cbiO cobalt transport 99.8 3E-18 6.5E-23 191.9 12.8 114 42-162 118-231 (269)
500 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.8E-18 4E-23 184.6 10.4 147 632-840 17-173 (200)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-187 Score=1690.95 Aligned_cols=1119 Identities=52% Similarity=0.926 Sum_probs=1024.2
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
+++|.++++|||+||+||+|||...||+||||||||+||++++.+|+++|+||+|+||||.++.+++++||++++..++|
T Consensus 234 ~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t 313 (1391)
T KOG0065|consen 234 AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGAT 313 (1391)
T ss_pred HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcce
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccC
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV 204 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~ 204 (1202)
.+++|+||+++++.+||+|++|++|++||+||.+++++||+++||.||+++++|||++++++..++.++|..++.++...
T Consensus 314 ~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~ 393 (1391)
T KOG0065|consen 314 ALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYT 393 (1391)
T ss_pred EEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888887777777777
Q ss_pred CHHHHHHHHHhchhhhhhhhhhcCCCCcccccccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 000979 205 TVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVV 284 (1202)
Q Consensus 205 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ii~~~~ 284 (1202)
+..++.+.|.+++.+.+...+.....++.+.++.+.....|..+.|+|.+.++.|.+..++||..++....++.++++++
T Consensus 394 ~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali 473 (1391)
T KOG0065|consen 394 SVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALI 473 (1391)
T ss_pred CHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHH
Confidence 78999999999999999999888887777777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHHHHHHhhhcchhHHHhhcCCCCChhhHHHHHHHHhhhHHHHHH
Q 000979 285 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 364 (1202)
Q Consensus 285 ~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~~p~~~~~~ 364 (1202)
.|++|++.++ .+..++..+.|++||++.+.++.++.++...++++|+++|||...+|+||++.++..++++|..++..
T Consensus 474 ~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~ 551 (1391)
T KOG0065|consen 474 TGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIES 551 (1391)
T ss_pred HhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHH
Confidence 9999999874 44555677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHhccccCCCCccchhh
Q 000979 365 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWK 444 (1202)
Q Consensus 365 ~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~G~~i~~~~ip~~~~ 444 (1202)
.+|.+|.||+.|+.+++++||.+++.++..+.++.+++++++++++++.+|+.++++.++++.+++||++|...||+||+
T Consensus 552 ~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~ 631 (1391)
T KOG0065|consen 552 VVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFR 631 (1391)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCHHHHHHHHHHHhhcCCCCcccccCC---------------CCcccHHHHHhhcCcc-----cccchhHHHHHHH
Q 000979 445 WAYWCSPLTYAQNAIVANEFLGHSWKKFTQD---------------SSETLGVQVLKSRGFF-----AHEYWYWLGLGAL 504 (1202)
Q Consensus 445 w~~~isp~~ya~~~~~~~e~~~~~~~~~~~~---------------~~~~~g~~~l~~~~~~-----~~~~~~~~~~~il 504 (1202)
|++|++|+.|++++++.|||.++++.|.+.+ ...+.|.++++..++. ....|+|++++++
T Consensus 632 Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gil 711 (1391)
T KOG0065|consen 632 WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGIL 711 (1391)
T ss_pred HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHH
Confidence 9999999999999999999999988876221 1244578888888777 5567899999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCCCCCCccccccccchhhhhhh
Q 000979 505 FGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAE 584 (1202)
Q Consensus 505 ~g~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1202)
+|+.++|.+++.+++.|+++....+.....+....+.... .+.. ....+..+
T Consensus 712 lgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~---------------------------~~~~-~~~~~~~~ 763 (1391)
T KOG0065|consen 712 LGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVK---------------------------SAGS-SSEIEKLD 763 (1391)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcch---------------------------hccc-cccccccc
Confidence 9999999999999999999888777666544332211100 0000 00000000
Q ss_pred hhccCCCCCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 000979 585 AEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 664 (1202)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g 664 (1202)
.... .+.+++..+..+..++++||.+-++++-..+.++ +++++|+|||+.++||.++||||+||||||||||+|+|
T Consensus 764 ~s~~-~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~ 839 (1391)
T KOG0065|consen 764 DSSH-QEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAG 839 (1391)
T ss_pred cccc-cccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhc
Confidence 0000 0123444555566777888887777665555544 67899999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 000979 665 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744 (1202)
Q Consensus 665 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 744 (1202)
|...|.++|+|.+||.|.++..++|.+|||.|+|.|.+.+||||.|.|+|.+|++.+.+.+++.+.||++++.++|.+++
T Consensus 840 R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~ 919 (1391)
T KOG0065|consen 840 RKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA 919 (1391)
T ss_pred CcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh
Confidence 99999999999999999887889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p-~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
|.+||.|| +|||.+||||++||.+|+.|| .||||||||||||+.++..|++.+|+++++|+||+||+||||.++++.|
T Consensus 920 daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~F 998 (1391)
T KOG0065|consen 920 DALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAF 998 (1391)
T ss_pred hhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHH
Confidence 99999999 899999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhhhhccchHHHhhhcHHHHHHHHH
Q 000979 824 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKAL 903 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 903 (1202)
|++++|++||++||+||.++++..+++||++++|++ |++..|||||+||+++...+.....||++.|++|+++++++++
T Consensus 999 D~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 999 DELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred hHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999998874 6666699999999999877777788999999999999999999
Q ss_pred HHhhCCCCCC-CCCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 000979 904 IEDLSRPPPG-SKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFN 982 (1202)
Q Consensus 904 ~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~ 982 (1202)
+++++++++. ..+...+++|+.|+|.|++.++||++..+||+|.++++|++..++.|+++|++||++++ +.++++|
T Consensus 1078 v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn 1154 (1391)
T KOG0065|consen 1078 VKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQN 1154 (1391)
T ss_pred HHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHH
Confidence 9999988887 66777778899999999999999999999999999999999999999999999999985 6899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHH
Q 000979 983 AMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAK 1062 (1202)
Q Consensus 983 ~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~ 1062 (1202)
.+|++|+++++.+..++....+.+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+++|+++||.+++.+
T Consensus 1155 ~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~ 1234 (1391)
T KOG0065|consen 1155 AMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASK 1234 (1391)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHH
Confidence 99999999999988887777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHH
Q 000979 1063 FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQ 1142 (1202)
Q Consensus 1063 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~ne 1142 (1202)
|++|++.+++..++.+.+|+|+.+++||.++|+.+.+.++.++.+|||+++|++.||.||+|+||+||+.|.+++++..+
T Consensus 1235 ~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~ 1314 (1391)
T KOG0065|consen 1235 FFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQ 1314 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccccC---------CCCCHHHHHHhhcC----CCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000979 1143 FGDMDDKKMD---------TGETVKQFLKDYFD----FKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202 (1202)
Q Consensus 1143 f~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1202 (1202)
++|.+..|.. .|.++++|+...+| +.++.......+.++|.+++.+++.+.+||.+++||
T Consensus 1315 ~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1315 LGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred hCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999888754 34589999999999 777777777778889999999999999999999886
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5e-181 Score=1766.13 Aligned_cols=1193 Identities=61% Similarity=1.089 Sum_probs=1019.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHH
Q 000979 7 PAEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 86 (1202)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraL 86 (1202)
+++++.++.++++..++.|+++++.+++++.....+.+..+|.+|+.+||++|+||.||++..++|||||||||+|||+|
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 34455555556666667777788888888877777778889999999999999999999999999999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHh
Q 000979 87 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFAS 166 (1202)
Q Consensus 87 v~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~ 166 (1202)
+++|++|||||||||||+.++.++++.|+++++..++|+|+++|||+++++++||+|++|++|+++|+||.+++++||++
T Consensus 352 ~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~ 431 (1470)
T PLN03140 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 431 (1470)
T ss_pred cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999998767899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCccccccccccccccc
Q 000979 167 MGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYG 246 (1202)
Q Consensus 167 lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1202)
+||+||+++|||||++++++..+++++|.....|+...+.+++.+.|+++..++...++...+.++...++.......|.
T Consensus 432 lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 511 (1470)
T PLN03140 432 CGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYS 511 (1470)
T ss_pred cCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCc
Confidence 99999999999999999998876655554444444446788999999998877666555443332222222222334578
Q ss_pred CcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHHHHHH
Q 000979 247 VGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISM 326 (1202)
Q Consensus 247 ~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~ 326 (1202)
.+.+.|.+.+++|.++..+||+..+..++++.+++|+++|++||+.+.+.....++..+.|++||++.+..+.++..+..
T Consensus 512 ~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~ 591 (1470)
T PLN03140 512 VPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELAL 591 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999987665555566778899999988888888888888
Q ss_pred hhhcchhHHHhhcCCCCChhhHHHHHHHHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000979 327 TIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIA 406 (1202)
Q Consensus 327 ~~~~~~v~~rer~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~ 406 (1202)
++.+||+++|||..++|++++|++++.++++|+.++.+++|++|+|||+|+++++++|+.+++.+++...++.+++.+++
T Consensus 592 ~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 592 MIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred HHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHHHHHHHhccccCCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCcccc-cCCCCcccHHHHH
Q 000979 407 VTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKF-TQDSSETLGVQVL 485 (1202)
Q Consensus 407 ~~~~~~~ia~~i~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~~~~-~~~~~~~~g~~~l 485 (1202)
++++++.+|+.+++++++++++|+||+++.+.||+||+|++|+||+.|++++++.|||.+..+.+. +.......|.++|
T Consensus 672 a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L 751 (1470)
T PLN03140 672 SVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL 751 (1470)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988665422 2223456799999
Q ss_pred hhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCCC
Q 000979 486 KSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSG 565 (1202)
Q Consensus 486 ~~~~~~~~~~~~~~~~~il~g~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1202)
+.+++...+.|+|.++++++++.++|.+++++++++.+...........+..................-...........
T Consensus 752 ~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1470)
T PLN03140 752 NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQ 831 (1470)
T ss_pred HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccc
Confidence 99999887789999999999999999999999999987655443332111100000000000000000000000000000
Q ss_pred CCCcccccc-ccchhhhhhhhhccCCCCCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeE
Q 000979 566 STDDIRGQQ-SSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 644 (1202)
Q Consensus 566 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 644 (1202)
.|....... .... ............++..|..+..++|+||+|.++.+...+..+...+++++|+|||++++|||+
T Consensus 832 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel 908 (1470)
T PLN03140 832 RMSNPEGLSKNRDS---SLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVL 908 (1470)
T ss_pred cccccccccccccc---ccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeE
Confidence 000000000 0000 000000011123334466677899999999998765443333334567899999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 000979 645 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 724 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 724 (1202)
+||+||||||||||||+|+|+.++|+.+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|||.|++.++.+...+.
T Consensus 909 ~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~ 988 (1470)
T PLN03140 909 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988 (1470)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence 99999999999999999999987777899999999886554567789999999999999999999999988876655566
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000979 725 ETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 804 (1202)
Q Consensus 725 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~ 804 (1202)
++++++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++
T Consensus 989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 66777899999999999999999998888899999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhhhhc
Q 000979 805 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALG 884 (1202)
Q Consensus 805 g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~~~~ 884 (1202)
|+|||+++|||+.++++.||++++|++||+++|+||++++++++++||++++|+++||+++|||||++|+++...+....
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~ 1148 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLG 1148 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccccc
Confidence 99999999999977899999999999889999999998877899999999988777999999999999998765544445
Q ss_pred cchHHHhhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 000979 885 IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFG 964 (1202)
Q Consensus 885 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g 964 (1202)
.|+++.|+.|+.+++..+.+++++.+.+..++...+++++.++|+|+++|++|+++++||||.+++.|+++++++|+++|
T Consensus 1149 ~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G 1228 (1470)
T PLN03140 1149 IDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVG 1228 (1470)
T ss_pred chHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 68999999999998887777766665544444444567899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000979 965 SLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSV 1044 (1202)
Q Consensus 965 ~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~ 1044 (1202)
++||+++++..+.++++++.|++|+++++.++.++.+++|.+..||++|+||+++|+|++.+|++|++++|+|+.++.++
T Consensus 1229 ~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~ 1308 (1470)
T PLN03140 1229 TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTT 1308 (1470)
T ss_pred HHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766778999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHH
Q 000979 1045 VYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRW 1124 (1202)
Q Consensus 1045 ~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w 1124 (1202)
+|.+|+|||+||++++++||+|+++++++.++++++|+++++++|+..+|..+++++++++++||||++|+++||+||+|
T Consensus 1309 if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W 1388 (1470)
T PLN03140 1309 YYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVW 1388 (1470)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcHHHHHHHHHHHHHhCCCcccccCC----CCCHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000979 1125 YYWANPIAWTLYGLVASQFGDMDDKKMDT----GETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1200 (1202)
Q Consensus 1125 ~~~~sp~~y~~~~l~~nef~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1200 (1202)
++|+||++|+++|++.|||+|.+.+|.+. +.++.+|+.++||++++++|++++|+++|+++|++++++++|++|||
T Consensus 1389 ~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1389 YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999988766543 35788999999999999999999999999999999999999999999
Q ss_pred cC
Q 000979 1201 RR 1202 (1202)
Q Consensus 1201 ~~ 1202 (1202)
||
T Consensus 1469 ~r 1470 (1470)
T PLN03140 1469 TR 1470 (1470)
T ss_pred cC
Confidence 98
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-160 Score=1580.94 Aligned_cols=1116 Identities=31% Similarity=0.542 Sum_probs=919.7
Q ss_pred HHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCE
Q 000979 45 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 124 (1202)
Q Consensus 45 ~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tT 124 (1202)
+.+|.+++.+||++|+||.||++..++|||||||||+||++|+++|+||||||||||||+.++.++++.|++++++.|+|
T Consensus 183 ~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT 262 (1394)
T ss_pred HHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCE
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999998766899
Q ss_pred EEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccC
Q 000979 125 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV 204 (1202)
Q Consensus 125 iIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~ 204 (1202)
+|+++|||+.+++++||+|++|++|+++|+|+.+++++||+++||+||+++||+||++++++..+.. ... ........
T Consensus 263 vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~-~~e~~~~~ 340 (1394)
T TIGR00956 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKP-GYEKKVPR 340 (1394)
T ss_pred EEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-ccc-cccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998765422 111 11111235
Q ss_pred CHHHHHHHHHhchhhhhhhhhhcCCCCc-----c----------cccccccccccccCcHHHHHHHHHHHHHHHHhcChH
Q 000979 205 TVQEFAEAFQSFHVGQKISDELRTPFDK-----S----------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSF 269 (1202)
Q Consensus 205 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~ 269 (1202)
+.+++.+.|++++.++...++.+....+ . ...+.......+..+++.|++.+++|.++..+||+.
T Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~ 420 (1394)
T TIGR00956 341 TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPS 420 (1394)
T ss_pred CHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHH
Confidence 6789999999887665544433211100 0 000011122346778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHHHHHHhhhcchhHHHhhcCCCCChhhHH
Q 000979 270 VYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYA 349 (1202)
Q Consensus 270 ~~~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~ 349 (1202)
.+..++++.+++|+++|++||+.+.+.. +..++.|++|+++.+..+.++..+...+.+|++++|||..++|++++|+
T Consensus 421 ~~~~r~~~~ii~~li~G~~F~~~~~~~~---~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~ 497 (1394)
T TIGR00956 421 FTLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADA 497 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHH
Confidence 9999999999999999999999875433 3456789999999998888888888888899999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHH
Q 000979 350 IPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSL 429 (1202)
Q Consensus 350 la~~l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~ 429 (1202)
+|+.++++|+.++.+++|++|+|||+|++.++++|+.+++.+++...++.+++.+++++++++.+|+.+++++++++++|
T Consensus 498 la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf 577 (1394)
T TIGR00956 498 IASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIY 577 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCcccc---cC-----------CC----------CcccHHHHH
Q 000979 430 GGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKF---TQ-----------DS----------SETLGVQVL 485 (1202)
Q Consensus 430 ~G~~i~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~~~~---~~-----------~~----------~~~~g~~~l 485 (1202)
+||+++.+.||.||+|++|+||++|++++++.|||.+..+.|. +. .. +...|.++|
T Consensus 578 ~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L 657 (1394)
T TIGR00956 578 TGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYL 657 (1394)
T ss_pred cccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHH
Confidence 9999999999999999999999999999999999998777653 10 01 134688888
Q ss_pred hh-cCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCC
Q 000979 486 KS-RGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRS 564 (1202)
Q Consensus 486 ~~-~~~~~~~~~~~~~~~il~g~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1202)
+. +++ ...+.|.++++++++.++|.+.+++++.+.+.....+.....+............ ....
T Consensus 658 ~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 722 (1394)
T TIGR00956 658 KLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGE-------------TSAS 722 (1394)
T ss_pred HhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhccc-------------cccc
Confidence 84 444 3457999999999999999999999999987554443222211100000000000 0000
Q ss_pred CCCCccccccccchhhhhhhhhccC-CCCCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCe
Q 000979 565 GSTDDIRGQQSSSQSLSLAEAEASR-PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 643 (1202)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 643 (1202)
...+..+........ ...+.+. ..............++|+||+++++.+ ++++.+|+|||++++|||
T Consensus 723 ~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge 790 (1394)
T TIGR00956 723 NKNDIEAGEVLGSTD---LTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGT 790 (1394)
T ss_pred ccccccccccCCCCc---cccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCE
Confidence 000000000000000 0000000 000000001112357999999988532 234679999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCC
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 722 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 722 (1202)
++||+||||||||||||+|+|+.+++ +.+|+|.+||.+... .+++.+|||+|+|.+++.+||+||+.|++.++.+...
T Consensus 791 ~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999987644 457999999998753 4678899999999999999999999999988866555
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000979 723 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNT 801 (1202)
Q Consensus 723 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~-illlDEPtsgLD~~~~~~v~~~l~~~ 801 (1202)
++++++++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ ||||||||||||+.++..+++.|+++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 6667778899999999999999999987643 799999999999999999997 99999999999999999999999999
Q ss_pred HhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhh
Q 000979 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL 881 (1202)
Q Consensus 802 ~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~ 881 (1202)
+++|+|||+++|||+..+++.||++++|++||+++|+|++++.++++++||+.+ |.++||+++|||||++|+.+...+.
T Consensus 949 a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~ 1027 (1394)
T TIGR00956 949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGA 1027 (1394)
T ss_pred HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhccccc
Confidence 888999999999999767889999999998779999999988778899999987 5557999999999999998754333
Q ss_pred hhccchHHHhhhcHHHHHHHHHHHhhCCCCCCC---CCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 000979 882 ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGS---KDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAF 958 (1202)
Q Consensus 882 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~ 958 (1202)
....++.+.|+.|+.+++..+.++....+.... .+.....++++|+|+|+++|++|+++++||||.+++.|++++++
T Consensus 1028 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~ 1107 (1394)
T TIGR00956 1028 HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF 1107 (1394)
T ss_pred chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334578999999988776655544433221111 11112246889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHH
Q 000979 959 IALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVF-YREKAAGMYAGIPWALAQVMIEIP 1037 (1202)
Q Consensus 959 ~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p 1037 (1202)
+|+++|++||++++ +.+++++|+|++|+++++.++.. ...++.++.||.+| +||+++|+|++.+|++|++++|+|
T Consensus 1108 ~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP 1183 (1394)
T TIGR00956 1108 AALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIP 1183 (1394)
T ss_pred HHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999986 46789999999999887776653 34556777888885 899999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccccccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Q 000979 1038 YILVQSVVYGAIVYAMIGFEWTAAK-------FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSG 1110 (1202)
Q Consensus 1038 ~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G 1110 (1202)
+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+..+|+.++++++.++++|||
T Consensus 1184 ~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G 1263 (1394)
T TIGR00956 1184 YNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCG 1263 (1394)
T ss_pred HHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988766 999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccC---------CCC--------------------------
Q 000979 1111 FIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD---------TGE-------------------------- 1155 (1202)
Q Consensus 1111 ~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~---------~~~-------------------------- 1155 (1202)
|++|+++||.||+|++|+||++|+++|++.|||++.+.+|.. .|.
T Consensus 1264 ~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C 1343 (1394)
T TIGR00956 1264 VLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSC 1343 (1394)
T ss_pred ccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCC
Confidence 999999999999999999999999999999999998876643 122
Q ss_pred ------CHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000979 1156 ------TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQR 1201 (1202)
Q Consensus 1156 ------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1201 (1202)
++.+|+ ..++++.++.|+|++|+++|++++ +++++++.++...+
T Consensus 1344 ~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1344 SFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred CcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 334454 467899999999999999999888 77778888765443
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-95 Score=886.39 Aligned_cols=579 Identities=32% Similarity=0.582 Sum_probs=502.6
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEc
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 678 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 678 (1202)
.+..+.|+|+++..+.+. ...+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 456789999998875321 13578999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 679 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 679 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
|++...+.+++.+|||.|||.++|++||+|++.|+|.+|++...+.++++++|+++++.+||.+++|+++|+++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877788899999999999999999999999999999999888899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|++ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred cCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccch---hhhhh---ccchHHHhhhcHHHHHHHHHHHhhCCCCC
Q 000979 839 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAAS---QELAL---GIDFTEHYKRSDLYRRNKALIEDLSRPPP 912 (1202)
Q Consensus 839 G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~---~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 912 (1202)
|++ +++.+||++. |. +||++.||+||++|+.+.. ++... .....+.++..+...+... .......
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 323 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLS 323 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHH---HHhhhcc
Confidence 998 5789999999 45 5999999999999987742 11100 0000111110111111100 0000000
Q ss_pred CCCCCCCCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH
Q 000979 913 GSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVL 992 (1202)
Q Consensus 913 ~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~ 992 (1202)
... ..+....++||.|++.+++|.+++.+|||.+...|.++.+.+|+++|++||++++ +..+++++.|++|+.+.
T Consensus 324 ~~~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~ 398 (613)
T KOG0061|consen 324 TSK--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILS 398 (613)
T ss_pred ccc--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHH
Confidence 000 0111126899999999999999999999999999999999999999999999976 35667799999999999
Q ss_pred HHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHH
Q 000979 993 FLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYF 1072 (1202)
Q Consensus 993 ~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~ 1072 (1202)
++.+..+.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++
T Consensus 399 ~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~ 478 (613)
T KOG0061|consen 399 FMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILL 478 (613)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88888888878999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccC
Q 000979 1073 TLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD 1152 (1202)
Q Consensus 1073 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~ 1152 (1202)
..++++++|++++++.||...|..+++++++.|++|+||+++.++||.||+|++|+|+++|++||++.|||.+....|..
T Consensus 479 ~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~ 558 (613)
T KOG0061|consen 479 SSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999863333422
Q ss_pred C-----CCCHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000979 1153 T-----GETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202 (1202)
Q Consensus 1153 ~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1202 (1202)
. ..++.+++ ..++++..+.|.|+.+++++.++|++++++++++..+.+|
T Consensus 559 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 559 SGNLCCESTGEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred CcCCcccccHHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 1 12345544 5789999999999999999999999999999998777654
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2e-94 Score=892.52 Aligned_cols=566 Identities=29% Similarity=0.492 Sum_probs=494.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4577999999999999999999999999999999999987543 358999999998765567788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666677778889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCC
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 864 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 864 (1202)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+|++ +++.+||+++| . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 9999999999999999988899999999999888999999999998 5899999997 56899999984 4 68999
Q ss_pred CCccceEEEcccchhhhh-----hccchHHHhhhcHHHHHHHHHHHhhCCCCC---CCCCCCCCCccCchhHHHHHHHHH
Q 000979 865 YNPATWMLEVSAASQELA-----LGIDFTEHYKRSDLYRRNKALIEDLSRPPP---GSKDLYFPTQFSQSSWIQFVACLW 936 (1202)
Q Consensus 865 ~npa~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 936 (1202)
.||+||++|+.+...+.. ...++.+.|+.++.+++..+.......+.+ .........++..+|+.|+.+|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999876432211 112345566666555544333221111110 111111224567899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHH
Q 000979 937 KQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 1016 (1202)
Q Consensus 937 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1016 (1202)
|+++..||||.++..|+++.+++|+++|++||+++. +.++++++.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986 45788999999999998888887777778899999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000979 1017 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAI 1096 (1202)
Q Consensus 1017 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1096 (1202)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcc-cccCCC-----CCHHHHHHhhcCCCcc
Q 000979 1097 VSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD-KKMDTG-----ETVKQFLKDYFDFKHD 1170 (1202)
Q Consensus 1097 ~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~ 1170 (1202)
+++++++++++|+||+++.++||+||+|++|+||++|+++|++.|||.+.++ +|...+ +..++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998765 564211 1124666789999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000979 1171 FLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1202 (1202)
Q Consensus 1171 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1202 (1202)
++|.++++|++|.++|+++++++||+...++|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999877776
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.6e-94 Score=886.09 Aligned_cols=582 Identities=24% Similarity=0.406 Sum_probs=480.7
Q ss_pred CCceeEEeeeEEEEecCchh--------------hhc--ccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 000979 600 EPHSLTFDEVVYSVDMPEEM--------------KVQ--GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 663 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~ 663 (1202)
.+..++|.|++|+++..... +.. ....+++++|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35789999999998654210 000 01124578999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 000979 664 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 743 (1202)
Q Consensus 664 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 743 (1202)
|+.+++..+|+|.+||.+... ..++.++||+|++.+++.+||+||+.|.+.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999988643 3345689999999999999999999998877755445556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 744 ~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
.|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999887778999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred ceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhhh------h---ccchHHHhhhc
Q 000979 824 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA------L---GIDFTEHYKRS 894 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~~------~---~~~~~~~~~~s 894 (1202)
|++++|+ +|+++|.|++ +++.+||+++| + +||.++|||||++|+.+...+.. . .....+.|+..
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999998 4899999997 57899999994 4 58999999999999976432100 0 01122334321
Q ss_pred HHHHHHHHHHHh--hCC-CCC-----CCCCCC-CCCccCchhHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q 000979 895 DLYRRNKALIED--LSR-PPP-----GSKDLY-FPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 965 (1202)
Q Consensus 895 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 965 (1202)
. .++.....+. ... ... ..+... ....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 000 000 000000 11234578999999999999998 89999999999999999999999
Q ss_pred HhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 000979 966 LFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVV 1045 (1202)
Q Consensus 966 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1045 (1202)
+||+++ ..++++|.|++||++++.++.+++..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 467899999999998888888777788999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHh
Q 000979 1046 YGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWY 1125 (1202)
Q Consensus 1046 ~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~ 1125 (1202)
|++|+|||+||++++++||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred HhhcHHHHHHHHHHHHHhCCCc-----ccccCC-C--CCHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000979 1126 YWANPIAWTLYGLVASQFGDMD-----DKKMDT-G--ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMF 1197 (1202)
Q Consensus 1126 ~~~sp~~y~~~~l~~nef~~~~-----~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1197 (1202)
+|+||++|+|+|++.|||++.+ .+|... + .....++ ...++.+...|.++++|++|+++|+++++++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998653 245321 0 1111222 23344455689999999999999999999999988
Q ss_pred cc
Q 000979 1198 NF 1199 (1202)
Q Consensus 1198 ~~ 1199 (1202)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 76
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.6e-91 Score=926.22 Aligned_cols=589 Identities=24% Similarity=0.392 Sum_probs=504.9
Q ss_pred CCceeEEeeeEEEEecCchh-------------h-h-----cccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHH
Q 000979 600 EPHSLTFDEVVYSVDMPEEM-------------K-V-----QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 660 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~-------------~-~-----~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~ 660 (1202)
....+.|+|++......+.. . . .+..+.++++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 45679999999876321110 0 0 012234578999999999999999999999999999999
Q ss_pred HHhCCCCC--ceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC----CCCHHHHHH-HH
Q 000979 661 VLAGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP----EVDSETRKM-FI 731 (1202)
Q Consensus 661 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 731 (1202)
+|+|+..+ .+.+|+|.+||.+... ...++.++||+|+|.+++.+||+||+.|++.++.+. ..+.+++++ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 2468999999987643 234567999999999999999999999998877542 233444333 35
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 000979 732 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 810 (1202)
Q Consensus 732 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~ 810 (1202)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999864 999999
Q ss_pred EecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCCCCccceEEEcccchhhh---------
Q 000979 811 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL--------- 881 (1202)
Q Consensus 811 ~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~~~~~~~~~~~--------- 881 (1202)
++|||+.+++++||++++|++ |+++|+|++ +++.+||+++ |+ +||++.|||||++|+++.+++.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998789999999999985 899999997 5789999999 44 6899999999999997754321
Q ss_pred -hhccchHHHhhhcHHHHHHHHHHHhhCCCC---------------CCCCCCCCCCccCchhHHHHHHHHHHHHHHhhcC
Q 000979 882 -ALGIDFTEHYKRSDLYRRNKALIEDLSRPP---------------PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 945 (1202)
Q Consensus 882 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 945 (1202)
....++++.|++|+.+++..+.++...... ...+.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 112368889999988776555443321110 0001112234678899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChH
Q 000979 946 PPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 1025 (1202)
Q Consensus 946 ~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 1025 (1202)
|.+++.|+++++++|+++|++||++++ +.+++++|.|++|+++++.++.++.++. .+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999986 3567899999999999999998877764 456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000979 1026 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLW 1105 (1202)
Q Consensus 1026 ~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1105 (1202)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccC---C---------------------C---CCHH
Q 000979 1106 NVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD---T---------------------G---ETVK 1158 (1202)
Q Consensus 1106 ~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~---~---------------------~---~~~~ 1158 (1202)
++|+||++|.++||+||+|++|+||++|+|+|++.|||++.+++|.. . | .+|.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999998887741 0 0 1567
Q ss_pred HHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000979 1159 QFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1199 (1202)
Q Consensus 1159 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1199 (1202)
+|+...||++++|+|+|++||++|+++|+++++++++++++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.9e-90 Score=910.18 Aligned_cols=592 Identities=24% Similarity=0.398 Sum_probs=496.0
Q ss_pred CCCceeEEeeeEEEEecCch-------h--------hhc---c---cccCceEEeecceEEEeCCeEEEEEcCCCCCHHH
Q 000979 599 FEPHSLTFDEVVYSVDMPEE-------M--------KVQ---G---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 657 (1202)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~-------~--------~~~---~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKST 657 (1202)
.+..++.|+|+++....... . ... + ..+.++++|+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34678999999987651110 0 000 1 1224578999999999999999999999999999
Q ss_pred HHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-------CCCHHHH--
Q 000979 658 LMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-------EVDSETR-- 727 (1202)
Q Consensus 658 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-------~~~~~~~-- 727 (1202)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++.+||+||+.|+++++.+. +...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999986532 458999999998754444678999999999999999999999998765321 1111111
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 728 ----------------------KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 728 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcccCCCC
Q 000979 786 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 864 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 864 (1202)
||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++ |+++|+||+ +++.+||+++ |+ +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESC-GF-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHc-CC-CCCCC
Confidence 999999999999999976 4899999999998889999999999985 899999997 5789999999 45 69999
Q ss_pred CCccceEEEcccchhh-h-----------hhccchHHHhhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCchhHHHHH
Q 000979 865 YNPATWMLEVSAASQE-L-----------ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFV 932 (1202)
Q Consensus 865 ~npa~~~~~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 932 (1202)
.|||||++|+++..++ . ....++++.|++|+.+++..+.++...............++|..+++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999875432 1 012357888998887765544332211000001111123458899999999
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHH
Q 000979 933 ACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTV 1012 (1202)
Q Consensus 933 ~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 1012 (1202)
.|++|+++.++||+..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++..+.++.++ +.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccch
Confidence 9999999999999999999999999999999999999986544445567788999999888888776664 667789999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000979 1013 FYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHH 1092 (1202)
Q Consensus 1013 ~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1202)
|+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCccc---ccCCCC-CHHHHHHhhcCCC
Q 000979 1093 IAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDK---KMDTGE-TVKQFLKDYFDFK 1168 (1202)
Q Consensus 1093 ~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~---~~~~~~-~~~~~~~~~~~~~ 1168 (1202)
+|+.+++++++++++|+||++|.++||+||+|++|+||++|+++|++.|||.+..+. |..... +|.+++ +.+|++
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcC
Confidence 999999999999999999999999999999999999999999999999999776543 111122 445555 789997
Q ss_pred cc--chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000979 1169 HD--FLGVVAAVLVVFAVLFGFLFALGIKMFNF 1199 (1202)
Q Consensus 1169 ~~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1199 (1202)
.+ |.|+++++|+||+++|++++++++++++.
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 54 67999999999999999999999999873
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-84 Score=793.23 Aligned_cols=564 Identities=26% Similarity=0.467 Sum_probs=499.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
.+..+|+|+|+-++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++...++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 4467999999999999999999999999999999999965432 235799999998776444788999999999999999
Q ss_pred HHHHHHHHHHccCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000979 706 IYESLLFSAWLRLSPE----VDSETRKM-FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 780 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~----~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlD 780 (1202)
|+|+|.|+++++.+.. .++.++.+ ..+.+++.+||.+++|+++|+...+|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999987632 22222222 567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCccchhHHHHHhhCCCcc
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQ 859 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~~~~ 859 (1202)
|+|.|||+.++.++++.||++++. +.|++++.|||+.+++++||+|++|.+ |+++|+||. +++++||+++ |+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999865 899999999999999999999999996 899999998 5689999998 45
Q ss_pred cCCCCCCccceEEEcccchhhhh-----------hc-cchHHHhhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCchh
Q 000979 860 KIKDGYNPATWMLEVSAASQELA-----------LG-IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSS 927 (1202)
Q Consensus 860 ~~~~~~npa~~~~~~~~~~~~~~-----------~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1202)
.||++.++|||+.++++..++.. .. .++.+.|..++.+++....++.........+......+|..++
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 68999999999999987322110 11 4688899999988876555443222222223333456789999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000979 928 WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 1007 (1202)
Q Consensus 928 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1007 (1202)
|.|++.|+.|.++.+.||..++..++++.+++|+++|++||+.+. .+..+...|.|++||++++..++.+.++. ...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~-~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIA-LTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHH-HHH
Confidence 999999999999999999999999999999999999999999982 45677889999999999999999888874 455
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000979 1008 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1087 (1202)
Q Consensus 1008 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1202)
+.||||+|||...+|++++|.++.++.++|+.++..++|.+|+||++||++++++||.+++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHhCCCcccccCCCC------------
Q 000979 1088 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGE------------ 1155 (1202)
Q Consensus 1088 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~~~~------------ 1155 (1202)
+++...|+.++++.+++..+++||+||.++||+||+|++|+||+.|++|+++.|||++.+.+|.+.|+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999873111
Q ss_pred ------------CHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000979 1156 ------------TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1200 (1202)
Q Consensus 1156 ------------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1200 (1202)
.+.+|++..|++++.|.|+|+||++||.++|.++..+++.|+|..
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 356778888889999999999999999999999999999999854
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-80 Score=757.75 Aligned_cols=696 Identities=21% Similarity=0.248 Sum_probs=443.4
Q ss_pred HHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEE
Q 000979 48 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 127 (1202)
Q Consensus 48 ~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIi 127 (1202)
+..-.+..|++..||+|| +++.+|||||||||||||||++||+||+|||||||||+.||..|+++|++ +++++||+||
T Consensus 467 na~~fi~~lp~g~~T~vg-e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~-~~~grTTivV 544 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVG-ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK-ASKGRTTIVV 544 (1228)
T ss_pred cHHHHHHhhHHhhccccc-CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH-hhcCCeEEEE
Confidence 346678899999999999 77788999999999999999999999999999999999999888888876 5679999999
Q ss_pred EecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCCCccCCHH
Q 000979 128 SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQ 207 (1202)
Q Consensus 128 aihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 207 (1202)
| ||++|++++|+|+||++|++||.|+|+||++. .+.+..+..........+. .+...
T Consensus 545 a---HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~~~-------- 601 (1228)
T KOG0055|consen 545 A---HRLSTIRNADKIAVMEEGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEEEE-------- 601 (1228)
T ss_pred e---eehhhhhccCEEEEEECCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-ccccc--------
Confidence 9 99999999999999999999999999999962 1333333322211111000 00000
Q ss_pred HHHHHHHhchhhhhhhhhhcCCCCcccc--cccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q 000979 208 EFAEAFQSFHVGQKISDELRTPFDKSKS--HRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 285 (1202)
Q Consensus 208 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ii~~~~~ 285 (1202)
+.......+................... ............ ........++|.++.++++|++++++.+.+++.|..+
T Consensus 602 ~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~ 680 (1228)
T KOG0055|consen 602 SLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPV-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATY 680 (1228)
T ss_pred chhhhhhhccccccccccccCCcccccccccccccccccccc-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhH
Confidence 0000000000000000000000000000 000000000000 0001234567888889999999999888888777655
Q ss_pred HH-------H---HhcccCCCCccccccchhhHHHHHHHHHHHhhH--HHHHHhhhcchhHHHhhcCCCCChhhHHHHHH
Q 000979 286 MT-------L---FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF--SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 353 (1202)
Q Consensus 286 g~-------~---f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~--~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~ 353 (1202)
.. + |+..+ .+........++++|..+....+... +..........+..|-|...| +.
T Consensus 681 P~fa~~~s~~~~~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F---------~~ 749 (1228)
T KOG0055|consen 681 PLFAYVFSQVLEAFYPPD--DDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMF---------RA 749 (1228)
T ss_pred HHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 22 1 22111 11222222347777776665544322 222233334444444444432 56
Q ss_pred HHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHH-HHHHH----HHHHHHHHHHHHccCChHHHHHHHHHHHHHH--
Q 000979 354 ILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL-LLGVN----QMASALFRFIAVTGRNMVVANTFGSFALLVL-- 426 (1202)
Q Consensus 354 l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~-~~~~~----~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~-- 426 (1202)
++.+++.||+.. +++ ++....+.. ...+. .-...+...++++...+.+|+.++|-+.++.
T Consensus 750 ll~qd~~wFD~~------------~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la 816 (1228)
T KOG0055|consen 750 LLRQEVGWFDDP------------ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLA 816 (1228)
T ss_pred HHcCCCcccCCC------------ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777743 555 666666543 11111 1122333444455555666777766443333
Q ss_pred ----HHHhccccCCCCccchhhhhhhhC---HHHHHHHHHHHhhcCCCCcccccCCCCcccHHHHHhhcCc-----cccc
Q 000979 427 ----LSLGGFILSREDIKKWWKWAYWCS---PLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-----FAHE 494 (1202)
Q Consensus 427 ----~l~~G~~i~~~~ip~~~~w~~~is---p~~ya~~~~~~~e~~~~~~~~~~~~~~~~~g~~~l~~~~~-----~~~~ 494 (1202)
+.++++... +++.-.+ --.|...+.+++|.+.+--+.. ..+..+.+.+.+.- ....
T Consensus 817 ~~Pll~~~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~----al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 817 TFPLLILSGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA----ALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhHHHHHHHHHHHHHHHHHHH
Confidence 333322221 1111111 0124555556666654311100 00011111111100 0000
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHhccCCCCCCccceeccccccccccccCCcccccccCCCCCCCCCCCCCCccccc
Q 000979 495 YWYWLGLGALFGFVLLLNFA-YTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQ 573 (1202)
Q Consensus 495 ~~~~~~~~il~g~~~~~~~~-~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1202)
.......++.+++...+.++ ++++++|.......+.....+.. .+++...+++..+++..++.||..+++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~---------~vf~~l~~ta~~~~~~~s~~Pd~~ka~ 955 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVF---------RVFMALSFTAMALGQASSYAPDISKAK 955 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHH---------HHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 11122235566666655543 66777775433222211111111 123444566666777788999999999
Q ss_pred cccchhhhhhhhhccCCCC--CCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCC
Q 000979 574 QSSSQSLSLAEAEASRPKK--KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 651 (1202)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~s 651 (1202)
.++..++.+.++++..+.. .+...+...+.++++||+|+||.+|. .+||+|+|+++++|+.+||||||
T Consensus 956 ~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~----------~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 956 IAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPD----------VPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCC----------chhhcCCcEEecCCCEEEEECCC
Confidence 9999999998876543332 33334556788999999999997753 45799999999999999999999
Q ss_pred CCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH
Q 000979 652 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 728 (1202)
Q Consensus 652 GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 728 (1202)
||||||.+.+|... +++..|.|.+||.+++. ..+|+++|.|.|+|.+|. .|++||+.|+. .+.+.++
T Consensus 1026 GsGKSTvI~LLeRf--Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e-- 1095 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERF--YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE-- 1095 (1228)
T ss_pred CCCHHHHHHHHHHh--cCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH--
Confidence 99999999999654 44779999999998765 457889999999999985 79999999982 1233333
Q ss_pred HHHHHHHHH-------cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000979 729 MFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 801 (1202)
Q Consensus 729 ~~~~~~l~~-------l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~ 801 (1202)
+.++++. .+|.+-.||.+|..|. +||||||||+|||||+++||+||||||.||+||+++++.|+++|++.
T Consensus 1096 --Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1096 --IIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred --HHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 2233222 3677889999998775 69999999999999999999999999999999999999999999986
Q ss_pred HhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 802 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 802 ~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
..|+|+|+++|+++ ..+.+|.|+++++ |+++..|+-
T Consensus 1173 -~~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1173 -MEGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred -hcCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 56999999999986 5789999999985 899999984
No 11
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-65 Score=623.05 Aligned_cols=467 Identities=27% Similarity=0.482 Sum_probs=391.5
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++++++||+++++|||++|+||+||+...||||||||||||||.+|+.||+|||||||||||||.+|.+|++.|+++|
T Consensus 138 ~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 138 SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 44899999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcC
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 198 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~ 198 (1202)
++ |+|||+|||||+.+++++||++++|++|+++|+|+.+++++||++.|++||++.||+||++++.+..+..+...+.
T Consensus 218 ~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~- 295 (613)
T KOG0061|consen 218 RS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEA- 295 (613)
T ss_pred hC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhH-
Confidence 75 9999999999999999999999999999999999999999999999999999999999999987642110000000
Q ss_pred CCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCcccccccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 000979 199 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQI 278 (1202)
Q Consensus 199 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~ 278 (1202)
.+.....+.++......+.............. .......+++.|+..+.+|.++...|++.....|.++.
T Consensus 296 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~ 365 (613)
T KOG0061|consen 296 -----VRIAKLINKFSQTDNLKKTLEALEKSLSTSKK-----VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQS 365 (613)
T ss_pred -----HHHHHHhhhccccchhhhhHHHHhhhcccccc-----cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHH
Confidence 00001111111000000000000000000000 00001577899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhHH-HHHHhhhcchhHHHhhcCCCCChhhHHHHHHHHhh
Q 000979 279 AFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 357 (1202)
Q Consensus 279 ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~-~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l~~~ 357 (1202)
+++++++|.+||+.+.+.... .++.|++|+++.+..+.... .+..+..+++++.||+..++|+.++|++|+.+.++
T Consensus 366 ~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~l 442 (613)
T KOG0061|consen 366 LVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAEL 442 (613)
T ss_pred HHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 999999999999986544333 36788888888887666555 57788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHhccccCCC
Q 000979 358 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSRE 437 (1202)
Q Consensus 358 p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~G~~i~~~ 437 (1202)
|+.++.+.+|..|+|||+|++.+..+|+.+++........+.+++.++++..++...|.++++++.+++++++||+++.+
T Consensus 443 P~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~ 522 (613)
T KOG0061|consen 443 PFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFD 522 (613)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhhhCHHHHHHHHHHHhhcCCCCcccccC--CCCcccHHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHH
Q 000979 438 DIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAY 515 (1202)
Q Consensus 438 ~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~~~~~~il~g~~~~~~~~~ 515 (1202)
.+|.||+|++|+|+.+|++++++.|||.+....|... ..+...+.++++..++... ..|.++.++.++.++++++.
T Consensus 523 ~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~l~~~~~~~~il~ 600 (613)
T KOG0061|consen 523 SIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFWLDLLVLLAFIVFFRVLG 600 (613)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998633333332 3566778899998888654 46889999999999999999
Q ss_pred HHHHhcc
Q 000979 516 TLALTFL 522 (1202)
Q Consensus 516 ~l~l~~~ 522 (1202)
++++++.
T Consensus 601 y~~L~~~ 607 (613)
T KOG0061|consen 601 YLALRFR 607 (613)
T ss_pred HHHHHhh
Confidence 9998875
No 12
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6e-62 Score=600.89 Aligned_cols=462 Identities=20% Similarity=0.322 Sum_probs=371.7
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++++++++++++.+||++|+||.||+...++||||||||++||++|+++|+||+|||||||||+.++..+++.|+++++
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~- 254 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ- 254 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 4566778999999999999999999988999999999999999999999999999999999999999999999999875
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcCCC
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKP 200 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~~~ 200 (1202)
+++|||+++|||+.++++.||+|++|++|+++|+|+++++++||+++||+||++.|||||++++++.....+.......
T Consensus 255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~- 333 (659)
T PLN03211 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREK- 333 (659)
T ss_pred CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcccccc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999875322100000000
Q ss_pred CccCCHHHHHHHHHhchhhhhhhhhhcCC-CCc--cc-----cccc-ccccccccCcHHHHHHHHHHHHHHHHhcChHHH
Q 000979 201 YRFVTVQEFAEAFQSFHVGQKISDELRTP-FDK--SK-----SHRA-ALTTETYGVGKRELLKANISRELLLMKRNSFVY 271 (1202)
Q Consensus 201 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~--~~-----~~~~-~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~ 271 (1202)
....+.+.+.|++... ++..+..... ..+ .. ..+. ......+..+++.|+..+++|.++. +|++...
T Consensus 334 --~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~ 409 (659)
T PLN03211 334 --PNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFN 409 (659)
T ss_pred --chHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHH
Confidence 0112333344432111 1100000000 000 00 0000 0011123457889999999999887 7888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHH-hhHHHHHHhhhcchhHHHhhcCCCCChhhHHH
Q 000979 272 IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 350 (1202)
Q Consensus 272 ~~~~~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~~~~~~~~~~v~~rer~~~~y~~~~y~l 350 (1202)
..|+++.+++|+++|++||+.+ . .+.+++.|++|+++.+..+ ..+..+..+..+|++++|||..++|++++|++
T Consensus 410 ~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~l 484 (659)
T PLN03211 410 TLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFM 484 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHH
Confidence 8999999999999999999864 1 2345678999988777555 44566777789999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHh
Q 000979 351 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLG 430 (1202)
Q Consensus 351 a~~l~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~ 430 (1202)
|+.+.++|+.++.+++|++|+|||+|++.++++|+.+++.+++...++.+++.+++++++++.+|+.+++++++++++|+
T Consensus 485 a~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfs 564 (659)
T PLN03211 485 ARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTG 564 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCc-----ccccC-----CCCcccHHHHHhhcCcccccchhHHH
Q 000979 431 GFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-----KKFTQ-----DSSETLGVQVLKSRGFFAHEYWYWLG 500 (1202)
Q Consensus 431 G~~i~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~-----~~~~~-----~~~~~~g~~~l~~~~~~~~~~~~~~~ 500 (1202)
||+++ .+|.||+|++|+||++|++++++.|||.+... .|... ..+...+...+. ....|.+
T Consensus 565 Gf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~ 635 (659)
T PLN03211 565 GFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATS 635 (659)
T ss_pred hhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHH
Confidence 99997 79999999999999999999999999976432 22111 011112222222 2246888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 000979 501 LGALFGFVLLLNFAYTLALTFL 522 (1202)
Q Consensus 501 ~~il~g~~~~~~~~~~l~l~~~ 522 (1202)
+++++++.++++++.++++++.
T Consensus 636 ~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 636 VSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999888764
No 13
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.2e-62 Score=601.68 Aligned_cols=470 Identities=23% Similarity=0.396 Sum_probs=392.3
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCc-ccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEM-IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~-~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++++++++++++.|||++|+||.||+++ .++|||||||||+|||||+++|+||||||||||||+.++..+++.|++++
T Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~ 213 (617)
T TIGR00955 134 KKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 (617)
T ss_pred HHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999753 68999999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhhHHHHhcCchhhhhhhhhcC
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 198 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~lG~~~p~~~n~ad~l~~v~~~~~~~~~~~~~~ 198 (1202)
+ +++|||+++|||+.+++++||+|++|++|+++|+|+++++++||+++|++||++.||+||++++++.......
T Consensus 214 ~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~----- 287 (617)
T TIGR00955 214 Q-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN----- 287 (617)
T ss_pred h-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----
Confidence 5 6899999999999999999999999999999999999999999999999999999999999998764322110
Q ss_pred CCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCccc---ccccccccccccCcHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 000979 199 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKL 275 (1202)
Q Consensus 199 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~ 275 (1202)
....+.+++.+.++.++..++..........+.. ..........+..+++.|...+++|.++...||+..+..++
T Consensus 288 --~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~ 365 (617)
T TIGR00955 288 --ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRL 365 (617)
T ss_pred --chHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0011223444555544433332222111100000 00000112235677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccccchhhHHHHHHHHHHHhhH-HHHHHhhhcchhHHHhhcCCCCChhhHHHHHHH
Q 000979 276 IQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 354 (1202)
Q Consensus 276 ~~~ii~~~~~g~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~-~~~~~~~~~~~v~~rer~~~~y~~~~y~la~~l 354 (1202)
++.+++|+++|.+|++.+.+.. +..++.|++|+++....+... ..+..+..+|++++||+..++|++++|++++.+
T Consensus 366 ~~~i~~~li~G~~f~~~~~~~~---~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l 442 (617)
T TIGR00955 366 IQTMMTAILIGLIYLGQGLTQK---GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442 (617)
T ss_pred HHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 9999999999999998765433 334567888888877766654 345566789999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHhcccc
Q 000979 355 LKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFIL 434 (1202)
Q Consensus 355 ~~~p~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ia~~i~~~~~~~~~l~~G~~i 434 (1202)
.++|+.++.+++|.+|+|||+|++.++.+|+.+++...+...++.+++.++++++++..+|..+++++.+++++|+||++
T Consensus 443 ~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i 522 (617)
T TIGR00955 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFI 522 (617)
T ss_pred HHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhCHHHHHHHHHHHhhcCCCCc-ccccC---CCCcccHHHHHhhcCcccccchhHHHHHHHHHHHHH
Q 000979 435 SREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQ---DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLL 510 (1202)
Q Consensus 435 ~~~~ip~~~~w~~~isp~~ya~~~~~~~e~~~~~~-~~~~~---~~~~~~g~~~l~~~~~~~~~~~~~~~~~il~g~~~~ 510 (1202)
+.+++|.||+|++|+||++|++++++.|||.+..+ .|... ..+...|.++++.+++... +.|.++++++++.++
T Consensus 523 ~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~ 600 (617)
T TIGR00955 523 NSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFF 600 (617)
T ss_pred ChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654 22211 1233468999999988654 458899999999999
Q ss_pred HHHHHHHHHhcc
Q 000979 511 LNFAYTLALTFL 522 (1202)
Q Consensus 511 ~~~~~~l~l~~~ 522 (1202)
+.+++++++++.
T Consensus 601 ~~~l~~~~L~~~ 612 (617)
T TIGR00955 601 FRLLAYFALRIR 612 (617)
T ss_pred HHHHHHHHHHHH
Confidence 999999988863
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.4e-60 Score=625.39 Aligned_cols=218 Identities=20% Similarity=0.320 Sum_probs=180.3
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-----------
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----------- 669 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~----------- 669 (1202)
...++|+||+|+|+.+ +++++|+|+||+|+|||.+||+||||||||||+++|.|..++.
T Consensus 1163 ~g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred CceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 3579999999999742 1235899999999999999999999999999999999976541
Q ss_pred -----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCC
Q 000979 670 -----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 670 -----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 705 (1202)
+.+|+|.+||.++.+ ..+|+.++||+|++.+|+ .|
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gT 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-cc
Confidence 148999999998754 467889999999999985 89
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 778 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ill 778 (1202)
++|||.++. ++.+.++ ++++++..+ |.+-.|+.+|..| ..||||||||++|||||+++|+||+
T Consensus 1312 IreNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILL 1381 (1466)
T PTZ00265 1312 IYENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILL 1381 (1466)
T ss_pred HHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999862 2333333 445555444 4456788888655 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecC---CEE-EEEcCC
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQE-IYVGPL 841 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g---G~~-~~~G~~ 841 (1202)
||||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|+++ |++ +..|+.
T Consensus 1382 LDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 999999999999999999999986 36899999999985 56889999999862 675 478985
No 15
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.4e-57 Score=590.63 Aligned_cols=223 Identities=28% Similarity=0.415 Sum_probs=192.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|.. +++.+|+||||.|++||++||+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4889999998841 13569999999999999999999999999999999999876 4589999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233344566889999999998888774 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 89999999
Q ss_pred CCccchhHHHHH
Q 000979 841 LGRHSCHLISYF 852 (1202)
Q Consensus 841 ~~~~~~~~~~~f 852 (1202)
+ +++...|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 7 4455544
No 16
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-55 Score=586.36 Aligned_cols=214 Identities=22% Similarity=0.314 Sum_probs=179.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++|+||+|+|+. +...+|+|+||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1235 ~g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~ 1301 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGC 1301 (1622)
T ss_pred CCcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCE
Confidence 357999999999941 12358999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.. ..+|+.+++|||++.+|+ .|+||||.++. ..++++ +.++++..++. +..|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC
Confidence 8764 457889999999999987 59999997631 223322 45555555543 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|+|+++|+++ ....||||++|+
T Consensus 1371 ~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD 1446 (1622)
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE
Confidence 54 4699999999999999999999999999999999999999999999874 5899999999986 456699999998
Q ss_pred cCCEEEEEcCCCc
Q 000979 831 RGGQEIYVGPLGR 843 (1202)
Q Consensus 831 ~gG~~~~~G~~~~ 843 (1202)
+ |+++.+|++++
T Consensus 1447 ~-G~IvE~Gt~~e 1458 (1622)
T PLN03130 1447 A-GRVVEFDTPEN 1458 (1622)
T ss_pred C-CEEEEeCCHHH
Confidence 5 89999999854
No 17
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-55 Score=586.88 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=178.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++|+||+|+|+. +..++|+|+|++|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1232 ~g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~ 1298 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDC 1298 (1495)
T ss_pred CCcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCE
Confidence 356999999999941 22458999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.+ ..+|+.+++|||++.+++ .|+||||.+.. +.++++ +.++++..++. +-.|+.+|.
T Consensus 1299 di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1299 DVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred EhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 8754 457889999999999987 59999997531 223332 45666666553 345667766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|+|+++|+++ ....+|||++|+
T Consensus 1368 ~G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1368 GG-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS 1443 (1495)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 44 4699999999999999999999999999999999999999999999864 5899999999985 456799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 1444 ~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1444 S-GQVLEYDSPQ 1454 (1495)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
No 18
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.6e-53 Score=487.95 Aligned_cols=225 Identities=25% Similarity=0.318 Sum_probs=186.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC-
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK- 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~- 682 (1202)
++.+|++..|..++... ....+...+++||||++++||++||+|+||||||||.|+|+|...+ ..|.|.++|.+.
T Consensus 281 l~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~ 356 (539)
T COG1123 281 LSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLD 356 (539)
T ss_pred eEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccc
Confidence 67789988887543111 0112456799999999999999999999999999999999998874 589999999762
Q ss_pred -Cc---ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCC
Q 000979 683 -KQ---ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 755 (1202)
Q Consensus 683 -~~---~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~ 755 (1202)
+. ...++.+-+|+|++ .+.|.+||++++.-........ ...++++++.++++.++|.. ..++. +++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~e 429 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHE 429 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 11 23456677888886 6789999999998776544322 24566778999999999985 34443 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|++|||||.||+..+..+.++|+++.++ |.|.|+++||+. -+..+|||+++|.+ |+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~ 507 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GR 507 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999999999866 999999999987 47889999999985 89
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
+|..||.
T Consensus 508 iVE~G~~ 514 (539)
T COG1123 508 IVEEGPT 514 (539)
T ss_pred EEEeCCH
Confidence 9999975
No 19
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.9e-52 Score=558.24 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=178.6
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
.+.++|+||+++|+.. ...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1282 ~g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGL 1348 (1522)
T ss_pred CCcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCE
Confidence 3579999999999521 1358999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++.. ..+|+.+++|||++.+|+ .|+||||.... +.++++ +.++++..++. +-.|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccC-ccHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC
Confidence 8764 457889999999999997 59999996311 233332 45666666654 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+++...+++.|++.. +++|||+++|+++ ....+|||++|+
T Consensus 1418 ~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD 1493 (1522)
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 44 4699999999999999999999999999999999999999999998864 5899999999985 466799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++.+|+++
T Consensus 1494 ~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1494 K-GEVAEFGAPS 1504 (1522)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
No 20
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-51 Score=550.42 Aligned_cols=212 Identities=24% Similarity=0.275 Sum_probs=178.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+.++|+||+|+|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 57999999999952 22358999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+.. ..+|+.++||||++.+|+ .||+|||... .+.+++ .+.++++..++.+ -.|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 467889999999999987 5999999632 123332 3567777776653 356777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~-p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
| ..||||||||++|||||+++ |+||+||||||+||+++.+.+++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 4 46999999999999999996 89999999999999999999999999863 5799999999985 567899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 1519 ~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1519 H-GAVAEMGSPR 1529 (1560)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999974
No 21
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.3e-49 Score=483.86 Aligned_cols=225 Identities=22% Similarity=0.295 Sum_probs=178.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.... .. +...+++.+|+|+||++++||+++|+||||||||||+|+|+|..+ .+|+|.++|.++.
T Consensus 276 l~~~~l~~~~~~~~~-~~-~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~ 350 (529)
T PRK15134 276 LDVEQLQVAFPIRKG-IL-KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLH 350 (529)
T ss_pred ccccCcEEEeecCcc-cc-ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEcc
Confidence 567788877741100 00 000123468999999999999999999999999999999999863 3799999998753
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. .+++.++|++|++ .+++.+||+||+.++...+.. .....+.+++++++++.+++. +..++. ++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 21 1345689999996 478889999999886543211 122333455688999999996 355554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.||++++|++ |
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-G 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999986 57789999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|++
T Consensus 503 ~i~~~~~~ 510 (529)
T PRK15134 503 EVVEQGDC 510 (529)
T ss_pred EEEEEcCH
Confidence 99999986
No 22
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.9e-49 Score=481.83 Aligned_cols=217 Identities=22% Similarity=0.315 Sum_probs=176.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc-Ccc-
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 681 (1202)
++++|+++.|+.. ..+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 6788888887410 0123468999999999999999999999999999999999876 458999996 532
Q ss_pred --CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000979 682 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 748 (1202)
Q Consensus 682 --~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 748 (1202)
... ...++.++|++|++.+++.+||+||+.+...+. ...++.+++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999998899999999998764321 122333456788999999975 33444
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.|||++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 5788999999
Q ss_pred EEecCCEEEEEcCC
Q 000979 828 LMKRGGQEIYVGPL 841 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~ 841 (1202)
+|++ |+++..|++
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999876
No 23
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-49 Score=486.46 Aligned_cols=227 Identities=21% Similarity=0.222 Sum_probs=183.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|+++.|+.+... . ....+.+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 37899999988521100 0 000112469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... .+++.++||+|++ .+++.+||.||+.+....+. ....++.+++++++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 321 2356799999997 58889999999987654321 112334456788999999995 455554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+.+.|||+++|.+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 540 G~iv~~g~~~ 549 (623)
T PRK10261 540 GQIVEIGPRR 549 (623)
T ss_pred CEEEEecCHH
Confidence 8999999874
No 24
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-48 Score=523.14 Aligned_cols=211 Identities=19% Similarity=0.250 Sum_probs=178.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
+.++|+||+++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|... .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999952 23468999999999999999999999999999999999864 37999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+.. ..+|+.++||||++.+|+ .|+||||.... ..+++ .+.++++.+++.+ -.|+.++..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCCHH----HHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 457889999999999997 59999995421 22322 3567777777643 356777654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
| ..||||||||++|||||+++|+||+||||||+||+.+...+++.|++.. +++|||+++|+++ ....+|||++|++
T Consensus 1351 G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 G-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred C-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999864 5799999999985 4667999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++.+|++.
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 8999999974
No 25
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-49 Score=479.77 Aligned_cols=223 Identities=21% Similarity=0.306 Sum_probs=179.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.
T Consensus 260 l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECC
Confidence 567777776531 0123589999999999999999999999999999999998642 24799999998753
Q ss_pred cc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 QE----TFARISGYCEQND---IHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
.. ..++.++|++|++ .+++.+||.||+.+....... ...+.++.++.++++++.+++. +..++.+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 403 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI----- 403 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----
Confidence 21 2245689999985 477889999999875321110 0012233445688999999996 4566653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G 481 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-G 481 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999888999999999986 57889999999985 8
Q ss_pred EEEEEcCCCcc
Q 000979 834 QEIYVGPLGRH 844 (1202)
Q Consensus 834 ~~~~~G~~~~~ 844 (1202)
+++..|++++.
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987653
No 26
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-49 Score=480.25 Aligned_cols=202 Identities=20% Similarity=0.317 Sum_probs=168.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecC---CCCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ 703 (1202)
+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++... ..++.++|++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 6999999999999999999999999999999999876 4589999999875321 234568999998 467889
Q ss_pred CCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 704 VTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 704 lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+||+||+.+....+ ... . ......++.++++++.+++. +..++.+ +.|||||||||+|||+|+.+|+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 99999998753211 000 0 11222334578899999996 6666654 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+.|||+++|++ |+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999999999999999999878999999999986 57889999999985 799998876
No 27
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.3e-48 Score=471.90 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=170.1
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---CCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 703 (1202)
+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 4999999999999999999999999999999999876 4589999999875421 2345699999996 57788
Q ss_pred CCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 704 VTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+||.||+.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+|||||+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321100 0112233345688999999995 5566653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999878999999999986 67889999999985 89999998865
No 28
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=413.70 Aligned_cols=227 Identities=24% Similarity=0.311 Sum_probs=190.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++.+|+...++.+...-. .......++++||+++++||.++|+|.||||||||=.+|.+...+ +|+|.++|.++
T Consensus 276 ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i 350 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDI 350 (534)
T ss_pred eEEecceEEEEecCCcccc--ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccc
Confidence 4667788777776532211 112446799999999999999999999999999999999987653 49999999987
Q ss_pred Cc------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 683 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.. ...|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+..+|.+++.++++.+||... +.... ++
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~--~r~RY--Ph 425 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPA--TRNRY--PH 425 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChh--HhhcC--Cc
Confidence 53 34577889999998 578999999998887766543 46778899999999999999763 22223 47
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.|||||||++||||++.+|++++||||||+||-.-+.+|+++|+++.++ |.+-++++||+. -+..+||++++|. +|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999754 899999999986 4788999999998 48
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++|..||.
T Consensus 504 kiVE~G~~ 511 (534)
T COG4172 504 KIVEQGPT 511 (534)
T ss_pred EEeeeCCH
Confidence 99999996
No 29
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-47 Score=480.75 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=175.8
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
..+.++|+|++.+|. ++-..+|+|||++|+|||.+||+|..|||||||+++|-+... +.+|+|.+||
T Consensus 1135 ~~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDg 1201 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDG 1201 (1381)
T ss_pred CCCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcC
Confidence 457899999999984 223468999999999999999999999999999999998765 4689999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccc
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVG 749 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 749 (1202)
.++.+ .++|+.++.+||||.+|. .|+|.||.=. .+.++++ +-+++|..+|. ...|..+.
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf------~e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPF------DEYSDDE----IWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-CccccccCcc------cccCHHH----HHHHHHHhChHHHHhhCCcCCCceec
Confidence 99765 568899999999999986 7999998521 1223322 34445554443 23455554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
.. ...+|-||||.+++||||+++++||+|||+|++.|+++-..|+++||+-- +++|||.+.|+.+. ..-+|||+||
T Consensus 1271 eg-G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T--Vmd~DrVlVl 1346 (1381)
T KOG0054|consen 1271 EG-GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT--VMDSDRVLVL 1346 (1381)
T ss_pred CC-CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch--hhhcCeEEEe
Confidence 43 35699999999999999999999999999999999999999999999853 47999999999873 4457999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++.+|+|.
T Consensus 1347 d~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1347 DA-GRVVEFDSPA 1358 (1381)
T ss_pred eC-CeEeecCChH
Confidence 85 8999999984
No 30
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=392.51 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=191.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++.+| ++.++|+|||++|++||+++|+||||||||||||||.|+.. +.+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6788988877 45789999999999999999999999999999999999876 45899999997653
Q ss_pred ----cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
....|+.+|+|+|+..+||++||.||+..+...- .+.++++.++...++|+.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346788999999999999999999999875422 2345667777889999999999998886 3589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||||+|||||+.+|+++|+|||||+|||+...++++.+++++++|.|.|++||++. ...+.+|||+.|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEee-CCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999987 4778899999998 58999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 873
No 31
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.6e-48 Score=469.01 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=177.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|.. .+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.
T Consensus 258 l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECC
Confidence 667777765421 0123589999999999999999999999999999999998652 14799999998764
Q ss_pred c----ccccceEEEeecCC---CCCCCCCHHHHHHHHHH--ccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 684 Q----ETFARISGYCEQND---IHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 684 ~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
. ...++.++|++|+. .+++.+||+||+.+... ............++.++++++.+++.+ ..++.+
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 401 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI----- 401 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----
Confidence 2 12356789999995 57889999999987532 110001122333456789999999964 456553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|.+ |
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G 479 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-G 479 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999888999999999986 67889999999985 7
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..++.+
T Consensus 480 ~i~~~~~~~ 488 (500)
T TIGR02633 480 KLKGDFVNH 488 (500)
T ss_pred EEEEEEccc
Confidence 999888764
No 32
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-47 Score=467.16 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=167.9
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCC---CCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 703 (1202)
+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 3899999999999999999999999999999999866 4479999999875431 1245689999984 47888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
+|+.||+.................++.++++++.+++. +..++.+ +.|||||||||+|||||+.+|+|||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431110010011222335678999999996 5666653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|+|||+.++..+.+.|++++++|.|||++|||++ ++.+.|||+++|+ +|++++.|.+++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 9999999999999999999878999999999986 6888999999998 589999998764
No 33
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=464.56 Aligned_cols=205 Identities=20% Similarity=0.325 Sum_probs=170.9
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCC---CCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPF 703 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 703 (1202)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 6999999999999999999999999999999999876 458999999987532 12345789999986 48888
Q ss_pred CCHHHHHHHHHHccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 704 VTIYESLLFSAWLRL-SPE--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+|+.||+.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 000 11222335678899999994 5666654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCcc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 844 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~~ 844 (1202)
||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|.+ |++++.|++++.
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 9999999999999999999999888999999999986 58899999999984 899999998754
No 34
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.4e-47 Score=458.71 Aligned_cols=216 Identities=19% Similarity=0.293 Sum_probs=168.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378899998873 23589999999999999999999999999999999996531 1479999999764
Q ss_pred Cc----ccccceEEEeecCCCCCCC--CCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 683 KQ----ETFARISGYCEQNDIHSPF--VTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
.. ...++.++|++|++.+++. .|+++++.+.... ....... .+.+++++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 1235678999998765433 5677666543210 1111112 223456789999999986 666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHH-hcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~v~~l~~ 831 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.+
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998775 47999999986 4655 5899999985
Q ss_pred CCEEEEEcC
Q 000979 832 GGQEIYVGP 840 (1202)
Q Consensus 832 gG~~~~~G~ 840 (1202)
|+++..-.
T Consensus 479 -G~i~~~~~ 486 (490)
T PRK10938 479 -GDIYRYVQ 486 (490)
T ss_pred -CceEEeec
Confidence 78776543
No 35
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=456.33 Aligned_cols=215 Identities=17% Similarity=0.255 Sum_probs=171.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.+ +.+|+|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 251 i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 313 (491)
T PRK10982 251 LEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKIN 313 (491)
T ss_pred EEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECC
Confidence 6677777642 137999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCC---CCCCCCCHHHHHHHHHH--ccCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000979 684 QE----TFARISGYCEQND---IHSPFVTIYESLLFSAW--LRLSPE-VDSETRKMFIDEVMELVELN-PLRQSLVGLPG 752 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 752 (1202)
.. ..++.++|++|++ .+++.+|+.+|..+... ...... ......++.++++++.+++. +..++.
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 388 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ----- 388 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----
Confidence 31 1245689999985 46788888877433210 000001 12223345678889999985 344554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.++|||+++|.+
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~- 466 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN- 466 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999888999999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..++++
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 8999888764
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=390.40 Aligned_cols=219 Identities=23% Similarity=0.322 Sum_probs=194.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+++++|++.|... ..+...+|+|||++|++||++||+|+||||||||+|++.++.. |.+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 6789999887531 1234679999999999999999999999999999999999876 55899999997754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. +..|+.+|+++|+..++...||.||+.|...+.. .+++++++++.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 3467899999999999999999999999987763 56788899999999999999888876 35899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|+|||+|||||+|||++...|+++|+++.++ |.||+++||+++ -+.+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 47889999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999974
No 37
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=377.87 Aligned_cols=215 Identities=26% Similarity=0.364 Sum_probs=193.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++|+||++.|. ++.+++|+|++|++||+++++|||||||||+||+|.+... +.+|+|.+||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 67899998773 4578999999999999999999999999999999999877 56999999999876
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 758 (1202)
. ...|+.+|||-|.-.+||++||.||+.+-..+. +.++++.+++++|+++.+||.+ +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999876655 4567788889999999999974 55654 478999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||+|||.+||||+.+|+|||+|||+++|||.++..+++.++++.++ |+|||++|||.+ |.+.+.||+++|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999997 7899999999998 589999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
+|+|++
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 999864
No 38
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-45 Score=379.79 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=181.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.+++++++|. ...+|+|||++|++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 467888888874 2679999999999999999999999999999999999887 5589999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. .....++||+|++.++|.+||+||+.++...+. .+++++++++++.++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 235678999999999999999999999987653 34556667899999999999998886 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
||+|||||+.+|+||+||||+++||+.++..+++.|.++.+ .++||+++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999998864 5899999999997 788899999999863
No 39
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-45 Score=372.30 Aligned_cols=230 Identities=26% Similarity=0.365 Sum_probs=199.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+++++|++++ +.++|++|||++|++||+++|+||||+|||||||+|.|+.. |.+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 358899999876 56789999999999999999999999999999999999887 558999999998
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 000979 682 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~ 754 (1202)
+.+ ...++.+|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 653 2356789999999999999999999998753 33456667777778888999999876 5554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+|||||+||+++|||++.||+||++||||+||||.++..+-++++++.+. |.|++++|||.+ +++..|||+++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 89999999999999999999999999999999999999999999999876 999999999997 69999999999985 8
Q ss_pred EEEEEcCCCcc----chhHHHHHhhC
Q 000979 834 QEIYVGPLGRH----SCHLISYFEAI 855 (1202)
Q Consensus 834 ~~~~~G~~~~~----~~~~~~~f~~~ 855 (1202)
++++.|++++. ...+.+||...
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 99999998652 23467787654
No 40
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-45 Score=423.53 Aligned_cols=250 Identities=25% Similarity=0.407 Sum_probs=208.0
Q ss_pred CCCccccccccchhhhhhhhhccCCCCCCCccC-CCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeE
Q 000979 566 STDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP-FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 644 (1202)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 644 (1202)
..+.+++..++.+.++..++++..+.. |...| ...+.++|+||+|+||.+| +.++|+|+||+|+|||+
T Consensus 428 ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~ 496 (716)
T KOG0058|consen 428 YSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEV 496 (716)
T ss_pred HHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCE
Confidence 345566777888999998877765554 55555 3567899999999999775 34579999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCC
Q 000979 645 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 721 (1202)
Q Consensus 645 ~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 721 (1202)
+|||||||+||||+.++|...++ |.+|+|.+||.|+++ ..+|+++|+|.|||.+|. -||+|||.|+.. .
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~ 568 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----N 568 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----C
Confidence 99999999999999999976655 679999999999765 457899999999999986 799999999853 3
Q ss_pred CCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 000979 722 VDSETRK-----MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 796 (1202)
Q Consensus 722 ~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~ 796 (1202)
.++++.. +.+.+.+. ++.+-.||.+|..|. .||||||||+||||||++||+||||||+||+||++++..|.+
T Consensus 569 ~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 3333322 22233333 566778999998765 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 797 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 797 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
.|.++.+ ++|||++.|.++ ..+.+|+|+++++ |+++..|+-
T Consensus 646 aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h 686 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTH 686 (716)
T ss_pred HHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccH
Confidence 9998754 699999999986 5789999999985 899999974
No 41
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=431.51 Aligned_cols=198 Identities=18% Similarity=0.259 Sum_probs=164.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999999873 2358999999999999999999999999999999999876 45799999873
Q ss_pred CcccccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000979 683 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 759 (1202)
+.+||++|++. +.+.+|++|++.+.. . .. . .++.++++++.+++. +..++. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-EG-D---DEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---c-CC-c---cHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 556799999986421 1 11 1 123467899999984 455554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 838 (1202)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||++ .+.+.||++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 359999999986 57788999999985 6887 77
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 875
No 42
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.6e-43 Score=428.45 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=164.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+||||++++||+++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 488999998873 2468999999999999999999999999999999999876 4589999843 2
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 760 (1202)
..+||++|++ .+++.+||+||+.+...... .... +...+++++.+++.+ ..++. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 67888999999988643221 1111 122457899999964 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999862 4 8999999986 5788899999998667776 455
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
No 43
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-44 Score=377.76 Aligned_cols=217 Identities=26% Similarity=0.437 Sum_probs=186.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. .+ ++|+||||++++||+++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 588999999984 22 58999999999999999999999999999999999776 5689999999987
Q ss_pred CcccccceEEEeecCC---CCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQETFARISGYCEQND---IHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
....-+..+|||||.. .-+| +||+|-+..+...+. -...+++ .++.++++|+.+|+.+.+|+.+| +||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKK-DKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHH-HHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544457899999964 2233 799999988743222 1122333 36779999999999999999875 699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||+|||-|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999998 5899999999996 48999
Q ss_pred EcCCCcc
Q 000979 838 VGPLGRH 844 (1202)
Q Consensus 838 ~G~~~~~ 844 (1202)
.|++++.
T Consensus 219 ~G~~~~~ 225 (254)
T COG1121 219 SGPPEEV 225 (254)
T ss_pred ccChhhc
Confidence 9999753
No 44
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7e-44 Score=438.87 Aligned_cols=268 Identities=27% Similarity=0.388 Sum_probs=217.6
Q ss_pred ccccccCCCCCCCCCCCCCCccccccccchhhhhhhhhccCCCC--CCCccCCCCceeEEeeeEEEEecCchhhhccccc
Q 000979 549 VQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK--KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLE 626 (1202)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1202)
+.+++.++.+.++..+..+...+++.++..+++..+..+..+.. .+.......+.++|+||+|+||.+++
T Consensus 294 ~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpd-------- 365 (1228)
T KOG0055|consen 294 FFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPD-------- 365 (1228)
T ss_pred EeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCc--------
Confidence 45566788888888777777778888888888887655443322 22233446778999999999997653
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 703 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 703 (1202)
..||+|+|++|++||.+||+|||||||||++++|.+..+ |.+|+|.+||.+++. +.+|..+|.|.|+|.+|.
T Consensus 366 --v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~- 440 (1228)
T KOG0055|consen 366 --VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA- 440 (1228)
T ss_pred --chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-
Confidence 457999999999999999999999999999999998766 679999999998764 456789999999997774
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH-------cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
.|++||+.|+. ++.+.++ ++++.+. ..+.+..|+.+|..++. ||||||||+||||||++||+|
T Consensus 441 ~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 441 TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCE
Confidence 89999999862 2333332 2222222 34566778999987764 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||||||+||+++++.|+++|+++ .+|+|.|+++|+++ .+ +.+|++++|++ |+++..|..+|
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCHHH
Confidence 9999999999999999999999886 56999999999987 34 55999999985 89999999754
No 45
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=366.04 Aligned_cols=222 Identities=26% Similarity=0.336 Sum_probs=189.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+..|| +++++|+|||++|++||++||+||||||||||||+|.|..+ +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478999998885 45689999999999999999999999999999999999766 5589999999765
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 683 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-----EVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
.. +.+|+.+||++|++.+.+.+||.+|+..+..-+.+. ....++.+..+-+.++.+|+.+.+-.+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 346789999999999999999999998764322110 1222334455678999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
..|||||+|||+|||||+.+|+|+|.|||+++|||.+++.+++.|+++++ +|.|||++.||.+. ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999975 59999999999874 789999999998
Q ss_pred cCCEEEEEcCCCccc
Q 000979 831 RGGQEIYVGPLGRHS 845 (1202)
Q Consensus 831 ~gG~~~~~G~~~~~~ 845 (1202)
+ |+++|+||+.+..
T Consensus 223 ~-G~ivfDg~~~el~ 236 (258)
T COG3638 223 A-GRIVFDGPASELT 236 (258)
T ss_pred C-CcEEEeCChhhhh
Confidence 5 8999999997643
No 46
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.3e-43 Score=425.69 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. + ..|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 378899988773 1 14899999999999999999999999999999999876 457999875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999875311 111 124678999999987777654 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++|||+. .+...+||+++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5778899999996 478888875
Q ss_pred Ccc---chhHHHHHhhC
Q 000979 842 GRH---SCHLISYFEAI 855 (1202)
Q Consensus 842 ~~~---~~~~~~~f~~~ 855 (1202)
.+. ...+..+++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 12345566665
No 47
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-43 Score=397.32 Aligned_cols=215 Identities=30% Similarity=0.438 Sum_probs=190.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++..|. .++.+|+||||++++||++||+||||||||||+|+|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeC
Confidence 356788888773 14679999999999999999999999999999999999887 4689999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+|||.|.+.++.... +..+++++++++.++|.+..++. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 3567889999999999999999999999998886432 34456789999999999855554 45799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++.+.||++++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 68888999999985 8999999
Q ss_pred CC
Q 000979 840 PL 841 (1202)
Q Consensus 840 ~~ 841 (1202)
++
T Consensus 220 ~~ 221 (293)
T COG1131 220 TP 221 (293)
T ss_pred CH
Confidence 76
No 48
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-43 Score=370.41 Aligned_cols=209 Identities=27% Similarity=0.414 Sum_probs=177.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+..|... .....+|++||++|++||++||+|||||||||||++|.|... +.+|.+.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcC
Confidence 4578888777532 122679999999999999999999999999999999999877 45899999997764
Q ss_pred c------c-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCC
Q 000979 684 Q------E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSG 755 (1202)
Q Consensus 684 ~------~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~ 755 (1202)
. . -.++.+|||+|+..+.|.+||+||+.+...+... ...+++++++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 1 2356799999999999999999999987765432 22245667889999999986665 43 458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||||||||||+.+|++|+.||||.+||+.+++.|+++|++++++ |+|+|++|||+ ++...|||++.|.+ |+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 99999999997 57899999999986 56
No 49
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8e-44 Score=379.49 Aligned_cols=228 Identities=26% Similarity=0.379 Sum_probs=194.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 378899999984 4679999999999999999999999999999999999876 4589999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ....+.++||||.+...+.+||+|-+.++..-+... ....++.++.++++++.+|+.+.+++.+ .+|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 456788999999998888999999998875432111 1112333446899999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||+.|||||+.+|++|+||||||.||...+.+++++++++++ +|+|||+++||++ ....+||++++|+ +|++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEe
Confidence 999999999999999999999999999999999999999999984 5999999999998 4789999999998 489999
Q ss_pred EcCCCcc--chhHHHHH
Q 000979 838 VGPLGRH--SCHLISYF 852 (1202)
Q Consensus 838 ~G~~~~~--~~~~~~~f 852 (1202)
.|+|.+. .+.+.+.|
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 9998753 23344555
No 50
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.5e-42 Score=423.18 Aligned_cols=201 Identities=19% Similarity=0.286 Sum_probs=164.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 488999998873 2458999999999999999999999999999999999876 4589999844 2
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 760 (1202)
..+||++|++ .+++.+||.||+.+...... .... +..++++++.+++.+ ..++. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999986 47888999999988642211 1111 123457899999864 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||+++ .+.+.||++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 4 8999999986 5778899999998666776 445
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
No 51
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-44 Score=376.13 Aligned_cols=207 Identities=29% Similarity=0.444 Sum_probs=186.2
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc---cCCc-ccccceEEEeecCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSP 702 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 702 (1202)
+...+++|||++|+.||++||+|||||||||||++|+|+.. +..|.|.+||. +.+. ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34568999999999999999999999999999999999987 55899999999 5444 334578999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
+|||.+|+.|+.+.+ ....++.+++.+++++++.++|++..++. +.+|||||||||++||||+.+|++||||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 33345667788899999999999998886 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 783 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
+++||..-++.+.+.|+++.++ |.|++++|||+. ++++.+|||++|++ |++...||+++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999866 999999999986 79999999999985 89999999864
No 52
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=355.03 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=191.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++..+++.+|+. ..++++||||+++.||+++|+|||||||||+|++|++... |.+|.|.++|.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccc
Confidence 456677766642 2347999999999999999999999999999999999887 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.+|.++.+..++..||++|||.|.+++. +....+.+++++++.+.+++.++.|+.+| ++|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 3 456889999998889999999999999999876 34456677889999999999999999875 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|||+|||||+++|++++|||||||||..+.+.+.+.++++.++|++||++||.++ ++.++|||+++|++ |++++.|.+
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 9999999999999999999999999999999999999999888999999999986 78889999999996 899999997
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 218 ~ 218 (245)
T COG4555 218 E 218 (245)
T ss_pred H
Confidence 4
No 53
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=395.01 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=196.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+.+| ++..+|+|+|++|++||+++|+||||||||||||+|+|... +.+|+|.++|++
T Consensus 4 ~~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 358899999887 35679999999999999999999999999999999999877 558999999999
Q ss_pred CCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 682 KKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
+.. ...+|.+|+|+|+..+||+|||+||+.|+.+.+ ....+++.+++++++++.++|.+..++. +.+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHH
Confidence 865 346788999999999999999999999998743 2334566788999999999999988886 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||+|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. |.+.+.|||++|++ |++...|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999999755 999999999986 78999999999985 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
+|++
T Consensus 220 tP~e 223 (352)
T COG3842 220 TPEE 223 (352)
T ss_pred CHHH
Confidence 9864
No 54
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=391.26 Aligned_cols=216 Identities=28% Similarity=0.389 Sum_probs=195.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+.+|. +..+|+|+|++|++||+++|+||||||||||||+|+|... +.+|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578899998873 1128999999999999999999999999999999999877 5689999999998
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
+. ...+|.+++|+|+..+||+|||+||+.|+.+.+. ..+++.+++++++.+.+++.+..|+. +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 4556889999999999999999999999987663 45677788999999999999999987 368999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||||||||+++|+++|||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |...++||+++|. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999999765 899999999975 7899999999998 589999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
|.+
T Consensus 218 p~e 220 (338)
T COG3839 218 PLE 220 (338)
T ss_pred hHH
Confidence 854
No 55
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-43 Score=346.54 Aligned_cols=214 Identities=25% Similarity=0.334 Sum_probs=185.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++|+||+..|+ .+..+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 67899998885 23568999999999999999999999999999999999766 56899999999865
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. .-.||++|+|+||..+.+..||+||+.|+.... ..+.++.++++.++++.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 236889999999999999999999999988765 344566778899999999999887765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||||+||||++.+|++|+.||||-+|||..+..+++++.++.+.|.||++.|||.+. +-.+-.|++.|. +|+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~-~Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALE-DGRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEe-CCEEEe
Confidence 999999999999999999999999999999999999999999999999999999999642 344456777776 589987
Q ss_pred EcCC
Q 000979 838 VGPL 841 (1202)
Q Consensus 838 ~G~~ 841 (1202)
+...
T Consensus 218 d~~~ 221 (223)
T COG2884 218 DESR 221 (223)
T ss_pred cccc
Confidence 6543
No 56
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=424.43 Aligned_cols=198 Identities=22% Similarity=0.357 Sum_probs=161.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 488999998873 2468999999999999999999999999999999999876 45799988641
Q ss_pred CcccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000979 683 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 759 (1202)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.+ ..++.+ +.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34556678777531 1 11 112345788999999963 455553 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~ 838 (1202)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 34 9999999986 57789999999985 7887 78
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+.+
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 8763
No 57
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.7e-41 Score=419.37 Aligned_cols=202 Identities=23% Similarity=0.325 Sum_probs=162.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|+++.|+ ++++|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478999998873 2468999999999999999999999999999999999866 45899988 4321
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 760 (1202)
.+||++|+. .+++.+||.||+.+..... .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753210 0111 123467888888885 3455543 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+...||+++++.++|++. |.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999875 459999999976 5778899999997335665 445
Q ss_pred CC
Q 000979 840 PL 841 (1202)
Q Consensus 840 ~~ 841 (1202)
+-
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 53
No 58
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.5e-41 Score=414.66 Aligned_cols=200 Identities=19% Similarity=0.277 Sum_probs=158.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+++
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~--- 570 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSA--- 570 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECC---
Confidence 488999999884 12358999999999999999999999999999999999876 4579998865
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqr 761 (1202)
+..+||++|+. .+.+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 23589999975 2445666664332111111 111 234678999999974 44444 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~ 840 (1202)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|++. .| |||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 34 9999999986 57788999999985 7888 7776
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
No 59
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=346.30 Aligned_cols=219 Identities=22% Similarity=0.315 Sum_probs=186.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC---CCCceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~---~~~~~~~G~i~~~ 678 (1202)
..++.+|+++.|. ++++|+|||+.|++++++|++||||||||||||++... .++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3478899998883 46789999999999999999999999999999999874 2334678999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPG 752 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 752 (1202)
|+++.. ..+|+.+|+|+|.|..|| +|++||+.|+.++....+ ++.++.+++.++...|.+ ..|++...
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 998654 347889999999999999 999999999988764322 556677888888888764 34444332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+|+ +.-|||++||.+. ...+..|+...+..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 24699999999999999999999999999999999999999999999996 5789999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++.+|+.+
T Consensus 224 G~LvE~g~T~ 233 (253)
T COG1117 224 GELVEFGPTD 233 (253)
T ss_pred cEEEEEcCHH
Confidence 8999999973
No 60
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-37 Score=406.50 Aligned_cols=217 Identities=22% Similarity=0.354 Sum_probs=188.5
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~ 992 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGK 992 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCE
Confidence 346899999998841 23569999999999999999999999999999999999876 45899999998
Q ss_pred cCCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 681 PKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 681 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
++.. ...++.+|||+|++.+++.+||+||+.|.++++. ...++.+++++++++.+||.+..|+.+ ++|||
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSG 1064 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSG 1064 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 8643 2346779999999999999999999999876653 223344566899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++..++||+++|++ |+++..
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~ 1141 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCS 1141 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999984 6999999999986 57789999999985 899999
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 1142 Gs~ 1144 (2272)
T TIGR01257 1142 GTP 1144 (2272)
T ss_pred cCH
Confidence 986
No 61
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.6e-41 Score=380.75 Aligned_cols=216 Identities=26% Similarity=0.401 Sum_probs=188.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|. ++.+|+||||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588999999883 2468999999999999999999999999999999999876 458999999988
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 682 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
... ...++.+||++|++.+++.+||+||+.|.+..+. .+..+.+++++++++.+++.+..++.+ +.||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2356789999999999999999999998765432 233344556789999999988888764 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++||+||+++|++|+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++.+.|||+++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 68889999999985 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 221 ~~~ 223 (306)
T PRK13537 221 APH 223 (306)
T ss_pred CHH
Confidence 863
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=9.1e-42 Score=331.35 Aligned_cols=212 Identities=25% Similarity=0.340 Sum_probs=182.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+..++|.|+|..-+ =.++++|++||++||+||||||||||||+|+|... |.+|+|.+||.+..
T Consensus 2 l~L~~V~~~y~~~~---------------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHLP---------------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcce---------------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecC
Confidence 34678888885321 25788999999999999999999999999999877 45899999999875
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ....|-++.++|+.++|.++||.+|+.++..-.+ +.+ ++.+++++.++..+||.++.++.. .+|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHH
Confidence 4 3456778999999999999999999988753221 222 344567899999999999988874 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||++||+|+++-+||+||||+|+|||.-+.++..++.+++++ +.|++++||+|+ ++....|+++++++ |++.+.|+.
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999999999999999999999999999999999754 899999999997 78999999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
.
T Consensus 215 ~ 215 (231)
T COG3840 215 Q 215 (231)
T ss_pred H
Confidence 3
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-40 Score=379.18 Aligned_cols=218 Identities=22% Similarity=0.302 Sum_probs=188.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. .+.+.+|+||||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6789999988421 113469999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.+||++|+..+++.+||+||+.+..... ..+.++.++++.++++.+||.+..|... ++||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23668999999999999999999999876533 2344555667899999999998877653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|+ +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 5778999999998 58999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|++.
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
No 64
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.2e-42 Score=339.29 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=184.0
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCccc----ccceEEEeecCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 702 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 702 (1202)
+++++++|||+++++||+++|+|||||||||.+.++.|... +.+|.|.+||.+++... .|..+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45679999999999999999999999999999999999877 45899999999876522 3446899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
.+||+||+......+.. +....+++.+.+++++.+++.++++... ..||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999887766532 2233466677899999999999999863 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
++|.||.+..+|.++++.|++.|..|++|-|+.+ +....|||.+++++ |+++++|++++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 9999999999999999999999999999999997 78999999999995 89999999864
No 65
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=383.44 Aligned_cols=217 Identities=25% Similarity=0.369 Sum_probs=189.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899998873 12458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|++||+||+.|+.+.+ ..+.++.+++++++++.++|.+..++.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223578999999999999999999999986533 2344555677899999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|+ +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999765 899999999986 6889999999998 589999999
Q ss_pred CCc
Q 000979 841 LGR 843 (1202)
Q Consensus 841 ~~~ 843 (1202)
+++
T Consensus 219 ~~~ 221 (356)
T PRK11650 219 PVE 221 (356)
T ss_pred HHH
Confidence 753
No 66
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.5e-40 Score=381.82 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=189.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999998874 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234577999999999999999999999986543 234455667899999999999888876 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 75
No 67
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=380.20 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=189.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 588999999873 2458999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
... ..++.+|||+|++.++|++||+||+.|+...+ ..+.++.+++++++++.+++.+..++. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 23578999999999999999999999987543 234455667889999999999887776 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||++ ++.+++||+++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 75
No 68
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-41 Score=344.07 Aligned_cols=218 Identities=26% Similarity=0.318 Sum_probs=182.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++.+|+++.|+... ...++|+||||++.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 478899999886321 12268999999999999999999999999999999999877 4589999999775
Q ss_pred Ccc----cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQE----TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
... .+++.+.+|+||+ .+.|..||++.|.-+... ...++.+ +++.++++.+||.+..-.+ .+.+|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc----Cchhc
Confidence 432 3577899999997 477889999988766543 1233332 3388999999997643222 24689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||+||||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|+++||.+ -+..+|||+++|++ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999765 789999999987 47889999999986 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..++.+
T Consensus 221 vE~~~~~ 227 (252)
T COG1124 221 VEIGPTE 227 (252)
T ss_pred EEeechh
Confidence 9999974
No 69
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-40 Score=380.66 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=189.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEE--EEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 680 (1202)
.++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 588999999884 2458999999999999999999999999999999999876 447 99999998
Q ss_pred cCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 681 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 681 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
+... ...++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 224567999999999999999999999986543 2344555667899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++||+++ ++..++||+++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68899999999985 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|++++
T Consensus 220 ~g~~~~ 225 (362)
T TIGR03258 220 HGEPQA 225 (362)
T ss_pred EcCHHH
Confidence 999753
No 70
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.6e-40 Score=375.20 Aligned_cols=215 Identities=27% Similarity=0.379 Sum_probs=187.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 588999999883 3468999999999999999999999999999999999876 4589999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+||+.+.+..+. ....+.+++++++++.++|.+..++.+ +.|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2346789999999999999999999997665432 223334456788999999998877765 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 73
No 71
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=354.48 Aligned_cols=215 Identities=23% Similarity=0.326 Sum_probs=189.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+.++|++|+|+. +..+|+|+|+++++||.++|+||||||||||+++|+|... +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3678999999852 1568999999999999999999999999999999999877 4579999999885
Q ss_pred C----cccccceEEEeecCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 K----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~----~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ....++.+|||+|+|.. +..-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 34578899999999754 44579999999987533 445566788899999999999987775 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+||.+|+.+|++|+|||||||||+..++.+++.++++.++ |+|+|++|||.+ .+.+++||+++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 799999999987 58889999999985 8999
Q ss_pred EEcCC
Q 000979 837 YVGPL 841 (1202)
Q Consensus 837 ~~G~~ 841 (1202)
++|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99986
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-40 Score=359.91 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=181.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788988873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ..+++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.+++.+..++.+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 3 1345679999999999999999999988653221 1233444566788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000979 837 YVGPL 841 (1202)
Q Consensus 837 ~~G~~ 841 (1202)
+.|++
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99986
No 73
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.9e-40 Score=376.54 Aligned_cols=215 Identities=22% Similarity=0.325 Sum_probs=188.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999999873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.+++.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 224577999999999999999999999986533 2334455667899999999998888763 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999986 68899999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
+.
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 74
No 74
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.6e-40 Score=375.59 Aligned_cols=217 Identities=25% Similarity=0.386 Sum_probs=187.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67899998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++||+|++.++|.+||+||+.|+...... ...+.++.+++++++++.++|.+..++. +++||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 3 22346799999999999999999999997653211 1233445566789999999998877776 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++||+++|++ |+++..|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999766 899999999986 68899999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 74
No 75
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=374.65 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=188.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.+|||+|++.++|++||.||+.|+.+.+ ..+..+.+++++++++.+++.+..++. +++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999986533 234455567789999999999887775 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ |.|+|++|||++ ++..++||+++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998654 899999999986 68899999999985 89999999
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 75
No 76
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=350.40 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=178.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcC
Confidence 35788888873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|++||+.+..... ....+..+++++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223467899999999999999999998865432 1223334456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 57789999999985 7887765
No 77
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.9e-39 Score=351.59 Aligned_cols=208 Identities=23% Similarity=0.318 Sum_probs=176.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 578999998841 12458999999999999999999999999999999999876 45899999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. .+++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998754321 223334556889999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999777999999999986 57778999999985 55
No 78
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=333.22 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=180.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++..| ++.++|+||||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6778888766 45789999999999999999999999999999999999876 34899999999876
Q ss_pred c----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000979 684 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++||||...+||.|||+|||..++..+.. ++..+..++++.+.+- |.+.+++..| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23466799999999999999999999988654422 1111222667777764 5555565543 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||-++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+++||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999866 789999999876 57889999999985 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|+.++
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 999754
No 79
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-39 Score=349.23 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=181.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc
Confidence 3578888887410 011468999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
. .++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.+++.+..++.+ +.||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 45679999999999999999999988754331 223334456789999999987766653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 841 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~ 841 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++ +|+++..+++
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999865 4899999999986 57789999999985 4899988875
No 80
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=374.64 Aligned_cols=215 Identities=25% Similarity=0.371 Sum_probs=186.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 378899998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.. ...++.++||+|++.+++.+||+||+.|+...+ ..+.++.+++++++++.+++.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999876533 1233445567899999999988777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000979 841 LG 842 (1202)
Q Consensus 841 ~~ 842 (1202)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 74
No 81
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.4e-39 Score=366.45 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=184.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899998873 2458999999999999999999999999999999999876 4589999999875
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
.. ...++.+||++|++.+++.+||+||+.+..... ..+..+.+++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234567999999999999999999998755432 1223333456788999999988777764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67889999999985 89999998
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
No 82
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-40 Score=337.82 Aligned_cols=208 Identities=26% Similarity=0.364 Sum_probs=181.7
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 702 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 702 (1202)
+..++++||||++++||+++|+||||||||||+|+|+|..+ |.+|+|.++|.++... ..+..++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 67889999999999999999999999999999999999887 5589999999987642 23456778899999999
Q ss_pred CCCHHHHHHHHHHccC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000979 703 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 773 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 773 (1202)
.|||.||+..++..+. +.. .+.++..+++.++++.+||.+.+|...| +||+|||||+.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998765331 111 1234455678899999999999999864 6999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 774 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 774 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|++|+||||.+||.+....++.+.|+++.++ |.||+++.||++ -++.+||||++|+. |+++..|+|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHH
Confidence 9999999999999999999999999999874 799999999998 48999999999985 89999999864
No 83
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-39 Score=349.74 Aligned_cols=213 Identities=29% Similarity=0.380 Sum_probs=181.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345678999999999999999999998754331 223334456789999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999986 57788999999985 89999887
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 5
No 84
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-39 Score=370.31 Aligned_cols=205 Identities=25% Similarity=0.302 Sum_probs=179.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cc----cceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 699 (1202)
+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34668999999999999999999999999999999999877 5689999999886532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
++|.+||+||+.|..... ..+.+++++++.++++.+||.+..++.. +.|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2344556677899999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||++||+.++..+++.|+++.++ |+|||++||+++ ++.+.+||+++|. +|+++..|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 9999999999999999999999754 899999999986 5789999999998 589999998753
No 85
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.2e-39 Score=367.76 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=177.0
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 705 (1202)
++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3568999999999999999999999999999999999876 458999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
|+||+.+.+.++. ....+.+++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765432 223344556889999999988777764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 786 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67889999999985 899999986
No 86
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=331.32 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=192.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+++++|+.++ +++.+++|+||+++||++++++|||||||||++++|.|... +.+|.|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5677777554 56789999999999999999999999999999999999887 56899999999876
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
.. .+..|||.|.+..++|.+||.|.|.|.|.++ .++.++.++.++.+++.+++.+....++ ++||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 43 4567899999999999999999999999887 4556777788999999999998877764 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
+.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|.+|+..
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999985 8999999973
No 87
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.3e-39 Score=346.40 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=178.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35788888874 2358999999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+++.+..+..+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 23457999999999988999999998865432 1233344556788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999986 57788999999985 7998876
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-39 Score=345.95 Aligned_cols=210 Identities=25% Similarity=0.422 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchh
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
. ..++.++|++|++.+++.+|++||+.+....+. ....+.++.++++++.+++.+..++. ++.||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHH
Confidence 3 345679999999999999999999988654432 22333445678999999998766664 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|.+ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998777899999999986 57788999999985 7887754
No 89
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-39 Score=368.57 Aligned_cols=218 Identities=22% Similarity=0.298 Sum_probs=185.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. ..++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 6789999988410 113569999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+||+||+.+..... ..+.++.+++++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999876543 1233444567889999999987777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.++||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
+.|+++
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
No 90
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.5e-39 Score=352.59 Aligned_cols=216 Identities=26% Similarity=0.359 Sum_probs=180.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECC
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
.. . .++.++|++|++.+++.+||+||+.+......... ...++.++.++++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----
Confidence 31 1 23568999999999999999999988754321110 01233445678999999998766665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~- 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ- 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-
Confidence 3579999999999999999999999999999999999999999999998777999999999986 57788999999985
Q ss_pred CEEEEEcCC
Q 000979 833 GQEIYVGPL 841 (1202)
Q Consensus 833 G~~~~~G~~ 841 (1202)
|+++..|++
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 899999876
No 91
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-39 Score=351.94 Aligned_cols=218 Identities=27% Similarity=0.392 Sum_probs=182.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377899999884 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+.++.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245789999999999899999999886543211 00122333456788999999987666653 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999765 899999999986 57788999999984 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 863
No 92
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.6e-38 Score=388.60 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=182.8
Q ss_pred ccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEE
Q 000979 596 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 675 (1202)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i 675 (1202)
..+...+.++++||+|.|.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|... |.+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceE
Confidence 34455678999999999963 22358999999999999999999999999999999999987 568999
Q ss_pred EEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-------CCCcccc
Q 000979 676 TISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-------ELNPLRQ 745 (1202)
Q Consensus 676 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~ 745 (1202)
.+||.+.+. ..+|+.+|||+||+.++. -|++||+.++. +..+.++. .++++.. .+..-.|
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~i----~~A~~~ag~~~fI~~lP~gy~ 600 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEEI----IEAAQLAGAHEFIENLPMGYD 600 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHHH----HHHHHHhCcHHHHHhcccccc
Confidence 999998654 568899999999998875 79999998753 23333322 2222222 3444567
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcce
Q 000979 746 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 746 ~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
+.+|..| .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +|+|+|+++|+++ ..+.+||
T Consensus 601 t~v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 601 TPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 7787655 5799999999999999999999999999999999999999999999974 5899999999985 6899999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000979 826 LFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~ 842 (1202)
+++|+ +|+++..|+.+
T Consensus 677 IiVl~-~Gkiv~~gs~~ 692 (709)
T COG2274 677 IIVLD-QGKIVEQGSHE 692 (709)
T ss_pred EEEcc-CCceeccCCHH
Confidence 99998 58999999964
No 93
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.3e-39 Score=372.14 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=186.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899999883 3568999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.+|||+|++.+++.+||+||+.++....... ....++.+++++++++.+++.+..++.+ ++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 345678999999999989999999998864221100 0012233456899999999988877763 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57899999999985 899999
Q ss_pred cCCCc
Q 000979 839 GPLGR 843 (1202)
Q Consensus 839 G~~~~ 843 (1202)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 99753
No 94
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.7e-39 Score=350.63 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=181.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35788888873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. . .++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++. ++.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHH
Confidence 21 1 23568999999999999999999988653321 22333445678999999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999986 68899999999984 8999998
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+.+
T Consensus 216 ~~~ 218 (232)
T cd03218 216 TPE 218 (232)
T ss_pred CHH
Confidence 864
No 95
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.4e-39 Score=362.49 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=184.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67899998873 2468999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.+||++|++.+++.+||.||+.+.+.++. ...++.+++++++++.+|+.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998765532 223334456889999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||++||+||+++|++|+|||||+|||+.+++.+++.|+++++ ++|||++||+++ ++.+.|||+++|++ |++++.|++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999986 68899999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 3
No 96
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=9.8e-39 Score=348.84 Aligned_cols=215 Identities=23% Similarity=0.281 Sum_probs=178.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCceEEEEEEEc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITIS 678 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~-----~~~~~~G~i~~~ 678 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35788888773 235899999999999999999999999999999999986 4 568999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ...++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 23456799999998888 7999999988654321 11122234567889999999876555420 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.||++++|.+ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999776 99999999986 57789999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 217 ~i~~~g~~~ 225 (227)
T cd03260 217 RLVEFGPTE 225 (227)
T ss_pred EEEEecCcc
Confidence 999999864
No 97
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1e-38 Score=346.52 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. ....++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5688999887421 011268999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+++.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999999999999999998765432 1223344566889999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999985 7887654
No 98
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-38 Score=346.09 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=173.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 3578999887410 011568999999999999999999999999999999999876 45899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
... .++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24579999999999999999999998764431 222334456889999999987766653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.||++++|++ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999976 5899999999986 34 48999999985 55
No 99
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.6e-38 Score=344.86 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=182.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CceEEEEEEEcCccC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g~~~ 682 (1202)
+.|+||++.++..+ ..+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 56899999885210 13568999999999999999999999999999999999764 123589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
.....++.++|++|++.+++.+||+||+.+............+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544567789999999999999999999998765432221122222234455 88888887766654 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999985 8998765
No 100
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-39 Score=314.07 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=185.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+..++++.+|+.. ...+|+|||++|.+||.++++||||||||||||+++|..+ |..|.|.+||.++.
T Consensus 4 l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEecc
Confidence 3456677776522 1458999999999999999999999999999999999887 56899999999876
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
... ..-|.|+|++.++|.+|+.||+.|+.+++ ..++.+|.+++.+.+..+||.+..+.. +-+||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQR 140 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQR 140 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHH
Confidence 532 23489999999999999999999999887 466788889999999999999887766 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecC-CEEEEEcCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 841 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g-G~~~~~G~~ 841 (1202)
+.|||||+.+|++|+||||.++||.-+++.++++|-++. +.|+.++++||+.+ +..-+++|+++|+-+ ||++..=++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999998875 45999999999987 566688999999843 688877666
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 220 d 220 (259)
T COG4525 220 D 220 (259)
T ss_pred C
Confidence 3
No 101
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.4e-38 Score=342.67 Aligned_cols=207 Identities=29% Similarity=0.393 Sum_probs=176.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCccc
Confidence 35788888873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+||+||+.+....+. .. +++++++++.+++.+..++.+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2345678999999999999999999988654321 11 234788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998777899999999986 56788999999985 7888765
No 102
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=352.15 Aligned_cols=218 Identities=26% Similarity=0.307 Sum_probs=179.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|.. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEecc
Confidence 357888887731 1458999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
.. ..++.++|++|++.+++.+||+||+.+...... ......+..+++++++++.+++.+..++.
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR----- 141 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----
Confidence 21 245679999999999999999999987532110 00111123345678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 57779999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 221 -G~i~~~~~~~ 230 (241)
T cd03256 221 -GRIVFDGPPA 230 (241)
T ss_pred -CEEEeecCHH
Confidence 8999999864
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=357.75 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=182.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+... ...+.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 68899999885210 012468999999999999999999999999999999999876 45899999998764
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 000979 684 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSG 755 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 755 (1202)
. ...++.+|||+|++. .+...||+||+.|..... ..+.++.+++++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134578999999863 333579999999865432 234455556788999999996 455554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 57788999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999863
No 104
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.7e-38 Score=345.42 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 457888888741 12468999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999999989999999988654332 223333456789999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|.+ |+++..|++
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999865 699999999986 57788999999985 899999876
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 217 ~ 217 (220)
T cd03263 217 Q 217 (220)
T ss_pred H
Confidence 3
No 105
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=355.11 Aligned_cols=204 Identities=25% Similarity=0.309 Sum_probs=174.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 699 (1202)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4589999999875421 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+++.+||+||+.+..... .....+.+++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998875432 1223334456788999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998754 899999999986 57789999999984 8999999863
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-38 Score=342.01 Aligned_cols=203 Identities=27% Similarity=0.391 Sum_probs=169.7
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 685 (1202)
++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++...
T Consensus 2 ~~~l~~~~~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~ 67 (205)
T cd03226 2 IENISFSYKK------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAK 67 (205)
T ss_pred cccEEEEeCC------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhH
Confidence 4677877631 1458999999999999999999999999999999999876 4589999999876443
Q ss_pred cccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000979 686 TFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 764 (1202)
Q Consensus 686 ~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv 764 (1202)
..++.++|++|++. .+..+|++||+.+..... . . .+++++++++.+++.+..++.+ +.||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHH
Confidence 45567999999974 344679999998764321 1 1 1234788999999988777653 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 765 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 765 ~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999999999999999999999999999999999777999999999986 57778999999985 7764
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-38 Score=346.95 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=182.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5688999887411 011368999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 235679999999999999999999988654331 22333445678999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999984 8999
Q ss_pred EEcCC
Q 000979 837 YVGPL 841 (1202)
Q Consensus 837 ~~G~~ 841 (1202)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 99875
No 108
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=357.57 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=181.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... .....+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 78899999985210 112358999999999999999999999999999999999876 34799999886531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 000979 684 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 735 (1202)
Q Consensus 684 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 735 (1202)
....++.+|||+|++ ..+...||+||+.|+.... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 2344579999999875432 234445566789999
Q ss_pred HHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000979 736 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 814 (1202)
Q Consensus 736 ~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~ 814 (1202)
+.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 556654 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 815 PSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 815 ~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
++ .+.+.+||+++|++ |++++.|+++
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 86 57889999999985 8999999874
No 109
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.3e-38 Score=346.69 Aligned_cols=215 Identities=22% Similarity=0.331 Sum_probs=182.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57889998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++.++++++.+|+.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2345679999999999999999999987642111 123334455678999999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998777999999999986 57788999999985 899999
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9863
No 110
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=343.17 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=180.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||++.|+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37899999988421 012468999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.... . ++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+|+.+..++. ++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 2 256899999999999999999999865432 122334455688999999998766654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 4568999997 489
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
No 111
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-38 Score=353.09 Aligned_cols=215 Identities=25% Similarity=0.340 Sum_probs=181.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378999999884 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. .++..||+||+.|..... ..+.++.+++++++++.+++.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 233567999999863 445689999998864322 2233344456889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.|||+++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 56789999999985 899999
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 986
No 112
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.9e-38 Score=342.12 Aligned_cols=207 Identities=25% Similarity=0.367 Sum_probs=174.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 35788888873 12358999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++.. ++||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 21 245679999999999999999999988754321 223334456789999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.+|++++|++ |+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999986 56778999999985 55
No 113
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2e-38 Score=345.40 Aligned_cols=211 Identities=28% Similarity=0.422 Sum_probs=176.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35788888763 2358999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCH
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.+..++++++.+ ++.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 31 1 24569999999999999999999988754321 112234466777877 466555554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999777899999999986 57889999999985 899998
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
No 114
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.7e-38 Score=349.60 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=181.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 78899998874 2358999999999999999999999999999999999876 45899999998753
Q ss_pred c-----------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
. ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235678999999999999999999987543111 122334455678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred CEEEEEcCC
Q 000979 833 GQEIYVGPL 841 (1202)
Q Consensus 833 G~~~~~G~~ 841 (1202)
|++++.|++
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999885
No 115
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.3e-38 Score=341.55 Aligned_cols=205 Identities=25% Similarity=0.332 Sum_probs=173.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 57889988873 12358999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. .+++.++|++|++.+++.+|++||+.+....+. ...+..+++++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999999999999998754321 223334456789999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 99999999999999999999999999999999999999999998777999999999986 57788999999985
No 116
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=355.58 Aligned_cols=218 Identities=25% Similarity=0.343 Sum_probs=181.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. ....+.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 6789999998521 0112358999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.+++. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23466899999986 4454 69999999876432 233445566788999999995 344544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.|||+++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57789999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999874
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-38 Score=346.83 Aligned_cols=212 Identities=27% Similarity=0.374 Sum_probs=179.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 57889998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
. ..+.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+++.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345799999999999999999998765432 122333445688999999998766654 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec-CCEEEEEcCC
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 841 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gG~~~~~G~~ 841 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57889999999984 5899988875
No 118
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.5e-38 Score=351.33 Aligned_cols=218 Identities=24% Similarity=0.280 Sum_probs=179.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 56788888763 12358999999999999999999999999999999999876 45899999998754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
. ..+++.++|++|++.+++.+||+||+.+...... .......+.+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999976431100 00011223345678899999998766664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999986 57789999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 8999999864
No 119
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-38 Score=336.01 Aligned_cols=205 Identities=24% Similarity=0.299 Sum_probs=185.7
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc------cc-ccceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ET-FARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~-~~~~~~~v~q~~~ 699 (1202)
+-..-++|+|++++.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. +. .++.+++|+|...
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 34567999999999999999999999999999999999877 568999999998643 12 3467899999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
++|+.||.||..|+..++ ..+++++++++.++++.+||.+..+.. +++|||||||||.+||||+.+|+|||+
T Consensus 117 LlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred cccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999999998776 456788999999999999999998887 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|||+|+|||--+.++++.|.++.++ ++|||++|||++ |.+.+.|||.+|. +|+++..|+|++
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999999999755 899999999997 7899999999997 689999999965
No 120
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.4e-38 Score=350.90 Aligned_cols=216 Identities=19% Similarity=0.287 Sum_probs=182.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478999998873 2458999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
... ..++.++|++|++.+++.+||.||+.+...... ..+.++.++.++++++.+++.+..++.+ +.|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 135578999999999999999999987643211 1223334456788999999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999984 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
++.|+++
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9999864
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-38 Score=346.96 Aligned_cols=214 Identities=27% Similarity=0.382 Sum_probs=180.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcC
Confidence 357888888741 1358999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+++.+ ..++. ++.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 234567899999999999999999998865432 1233344556789999999985 55554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999985 89999
Q ss_pred EcCC
Q 000979 838 VGPL 841 (1202)
Q Consensus 838 ~G~~ 841 (1202)
.|++
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 9885
No 122
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=355.52 Aligned_cols=218 Identities=26% Similarity=0.294 Sum_probs=181.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... ...+++|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 78999999985210 012458999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
. ...++.+|||+|++ .++ ..||+||+.|+.... ..+.++.+++++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999999875422 223444456688999999996 555654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+||+++|+ +
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~ 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-K 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 579999999999999999999999999999999999999999999999765 899999999986 5788999999998 5
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 8999999863
No 123
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=315.20 Aligned_cols=217 Identities=27% Similarity=0.391 Sum_probs=182.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.+|++|+.. ++.+|++||++++|||++||+||||||||||||.|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56789998763 4678999999999999999999999999999999999876 34899999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ....++.+.+||+..+-...||+|-+.++..-... ....++..+.++++++..++.+.+.+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 33456678999998876668999999988543211 112223445578899999999887765 35799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 761 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 761 rqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||.+||.|+. ++++||||||||+||...+..++++.|+++++|..|+++.||++. ...++||+++|++ ||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999986 456999999999999999999999999999999999999999985 6789999999985 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|+|.+
T Consensus 219 v~a~g~p~~ 227 (259)
T COG4559 219 VIASGSPQD 227 (259)
T ss_pred EeecCCHHH
Confidence 999999965
No 124
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.9e-38 Score=356.22 Aligned_cols=230 Identities=21% Similarity=0.232 Sum_probs=186.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+............+...+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 48899999988632110000001123579999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... ..++.++||+|++ .++|.+||.||+.+...... ...+.++.+++++++++.+++. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 58889999999988654321 1234455566788999999994 344543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+++||+++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999765 899999999986 57788999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999999864
No 125
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-38 Score=356.50 Aligned_cols=219 Identities=25% Similarity=0.334 Sum_probs=181.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+... ...+.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 489999999985210 112358999999999999999999999999999999999876 4589999999765
Q ss_pred Cc-------------------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC
Q 000979 683 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 741 (1202)
Q Consensus 683 ~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 741 (1202)
.. ...++.++||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13467899999987 4555 59999998875321 223444455688999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000979 742 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 820 (1202)
Q Consensus 742 -~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~ 820 (1202)
+..++. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999998777999999999986 477
Q ss_pred HhcceEEEEecCCEEEEEcCCC
Q 000979 821 EAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 821 ~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
+.+||+++|.+ |+++..|+++
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 89999999985 8999999864
No 126
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.8e-38 Score=339.91 Aligned_cols=209 Identities=23% Similarity=0.307 Sum_probs=175.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 57889998873 12358999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. .+++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+++.+..++. ++.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 14567999999998888999999998865432 123334445678899999998766654 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999777899999999986 57788999999985 6763
No 127
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-38 Score=338.49 Aligned_cols=209 Identities=33% Similarity=0.481 Sum_probs=176.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 35788888773 235899999999999 999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345678999999999999999999988654431 222333456788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+||+++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999875 599999999986 46778999999985 7888765
No 128
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-38 Score=346.06 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=182.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67889998873 2468999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. ..++.++|++|++.+++.+||+||+.+...... ..+.++.+.+++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134679999999999999999999987643321 122334455688999999998765554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998777999999999985 57889999999985 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 864
No 129
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.5e-38 Score=339.12 Aligned_cols=207 Identities=24% Similarity=0.347 Sum_probs=174.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 35788888874 2458999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+|++||+.+...... ....++.+++++++++.+++.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCH
Confidence 2 2345789999999999999999999988642111 122334445678899999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999877899999999986 57789999999985 55
No 130
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1e-37 Score=344.95 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 680 (1202)
++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 57889998874 235899999999999999999999999999999999986532 12799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000979 681 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 751 (1202)
+... ...++.++|++|++.+++ +|++||+.+....+. ..+.++.++.++++++.+++. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999998754331 112334445678899999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 489999999986 57789999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|+++..|++
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899999986
No 131
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.9e-38 Score=303.47 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=178.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.++++..+. ...+...||++|++.|++||.+||+|||||||||||-+++|... +.+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg---------~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVG---------QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhc---------CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 55666665543 12456789999999999999999999999999999999999877 45899999998864
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
. .-..+++|+|+|...+.|++|..||+...+.++.... .+......+.++.+||.+..+.. +.+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 3 1234689999999999999999999999888775322 22234567899999998766554 3589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||+|||+||||++..|+|||.||||-+||..+...|.++|-.+.+ .|.|.|++||||. +...|||.+-|.. |++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-cee
Confidence 99999999999999999999999999999999999999999988865 4999999999985 7889999999985 787
Q ss_pred EE
Q 000979 836 IY 837 (1202)
Q Consensus 836 ~~ 837 (1202)
+.
T Consensus 225 ~~ 226 (228)
T COG4181 225 VE 226 (228)
T ss_pred cc
Confidence 53
No 132
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-38 Score=351.51 Aligned_cols=217 Identities=24% Similarity=0.311 Sum_probs=182.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37899999988411 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++ ..++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3667789999999875432 2334445567889999999987776653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..|||+++|+ +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 45 6899999998 489999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99863
No 133
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=345.95 Aligned_cols=215 Identities=20% Similarity=0.257 Sum_probs=181.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 488999999874 2458999999999999999999999999999999999876 4579999999865
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCCccc-
Q 000979 683 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLR- 744 (1202)
Q Consensus 683 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~- 744 (1202)
.. ..+++.++|++|++.+++.+||+||+.++.. .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1335679999999999999999999987542 21 123344456678999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 824 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 824 (1202)
+.. .+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 3579999999999999999999999999999999999999999999999877999999999986 5777899
Q ss_pred eEEEEecCCEEEEEcCCC
Q 000979 825 ELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 825 ~v~~l~~gG~~~~~G~~~ 842 (1202)
|+++|++ |++++.|+++
T Consensus 221 ~i~~l~~-G~i~~~~~~~ 237 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAPE 237 (257)
T ss_pred EEEEEEC-CEEEEeCCHH
Confidence 9999985 8999998863
No 134
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=344.33 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=176.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999999884 2358999999999999999999999999999999999876 4589999998765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987521 0 1134578899999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 57788999999985 899988875
No 135
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-38 Score=351.29 Aligned_cols=216 Identities=26% Similarity=0.390 Sum_probs=182.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 488999999884 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 683 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. ..+++.++|++|++. .+...||+||+.+..... ..+.++.+++++++++.+++.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 234567999999874 334579999998865322 223444456688999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 46778999999985 799
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
++.|+++
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999874
No 136
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.8e-37 Score=340.59 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=178.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56789988873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357899999998888999999998765432 1223334456788999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++ +.+|++++|.+ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999986 35 45999999985 89999887
Q ss_pred C
Q 000979 841 L 841 (1202)
Q Consensus 841 ~ 841 (1202)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
No 137
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.1e-37 Score=341.05 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=173.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+.. .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5788999887411 011358999999999999999999999999999999999876 45899999998764
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
. ..+++.++|++|++ .+++.+||+||+.+....... ....+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456899999998 466789999999886543221 111111122235788889985 444544 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 56778999999985 7
Q ss_pred EEEEEc
Q 000979 834 QEIYVG 839 (1202)
Q Consensus 834 ~~~~~G 839 (1202)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
No 138
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=351.40 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... ...+.+|+|||++|++||+++|+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 78899999985210 112458999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++.+++++++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 13467899999986 3454 59999999875322 233444556788999999996 555554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+||+++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4899999999986 57789999999984
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|++.
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 8999999863
No 139
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=360.91 Aligned_cols=204 Identities=24% Similarity=0.293 Sum_probs=176.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 699 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 699 (1202)
+...+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.++||+|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 44568999999999999999999999999999999999876 4589999999876431 1 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 779 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illl 779 (1202)
+++.+||+||+.+....+. ...++.+++++++++.++|.+..++.. +.||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 233444566889999999988777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999986 57889999999985 8999999864
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.6e-38 Score=338.77 Aligned_cols=209 Identities=26% Similarity=0.411 Sum_probs=170.3
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 685 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~ 685 (1202)
++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--
Confidence 467777763 2458999999999999999999999999999999999876 45899999998653
Q ss_pred cccceEEEeecCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 686 TFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 686 ~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
..++.++|++|++.+. ..+||+||+.+....... .....++.+++++++++.+++.+..++. +..|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHH
Confidence 3456799999998763 337999999875432110 0011123345678999999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 999999999999999999999999999999999999999777899999999986 57788999999974 4 66654
No 141
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-38 Score=360.95 Aligned_cols=215 Identities=26% Similarity=0.426 Sum_probs=181.0
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 456677779999986 22378999999999999999999999999999999999887 4589999999
Q ss_pred ccCC---cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccC
Q 000979 680 YPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP------LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~ 750 (1202)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.++++ +.++++..++.+ -.|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 3568999999999999886 69999999862 2233333 566667666654 34556665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
. .++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4 467999999999999999999999999999999999999999999999875 599999999975 577889999998
Q ss_pred cCCEEEEEcCCCc
Q 000979 831 RGGQEIYVGPLGR 843 (1202)
Q Consensus 831 ~gG~~~~~G~~~~ 843 (1202)
+ |+++..|..++
T Consensus 529 ~-G~l~~~g~~~~ 540 (559)
T COG4988 529 N-GRLVEQGTHEE 540 (559)
T ss_pred C-CceeccCCHHH
Confidence 5 89999998753
No 142
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2e-37 Score=337.14 Aligned_cols=211 Identities=25% Similarity=0.323 Sum_probs=173.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678999887411 112468999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 578999999999989999999988654321 222333456788999999987666653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55899999985 776
Q ss_pred E
Q 000979 836 I 836 (1202)
Q Consensus 836 ~ 836 (1202)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
No 143
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-38 Score=349.30 Aligned_cols=214 Identities=23% Similarity=0.317 Sum_probs=180.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 57889998873 12348999999999999999999999999999999999876 45899999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++. .+...|++||+.+..... ..+.++.++.++++++.+++.+..++.. +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865322 2234444556889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 67999999985 899999
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9863
No 144
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=342.50 Aligned_cols=214 Identities=22% Similarity=0.315 Sum_probs=180.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67899998874 2358999999999999999999999999999999999876 45899999998652
Q ss_pred ---------cccccceEEEeecCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 684 ---------QETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ---------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
....++.++|++|++.+++.+|+.||+.+.. ... ....++....++++++.+|+.+..++..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0123567899999999999999999997532 221 1223333456788999999987666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999998777999999999986 56788999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (242)
T PRK11124 218 HIVEQGDAS 226 (242)
T ss_pred EEEEeCCHH
Confidence 999999863
No 145
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=343.03 Aligned_cols=213 Identities=22% Similarity=0.334 Sum_probs=178.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478999998873 2358999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LS 757 (1202)
... ..++.++|++|++.+++.+||+||+.+..... ..++.++.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23567999999999999999999998864221 1122233466777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+||+++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 58899999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99874
No 146
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-37 Score=336.78 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=169.0
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 684 (1202)
++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccC
Confidence 4677777631 12468999999999999999999999999999999999876 458999999987542
Q ss_pred --ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 685 --ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 685 --~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
..+++.++|++|++. .++.+|++||+.+..... .....+.++.++++++.+++.+..++. ++.||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 234567899999974 366789999998865322 122333345678899999998766655 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999877999999999986 57778999999985
No 147
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.14 Aligned_cols=215 Identities=25% Similarity=0.363 Sum_probs=181.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678999998841 2348999999999999999999999999999999999876 45899999998764
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..+++++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765322 2334444556889999999987767653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.|||+++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999986 57789999999985 899999
Q ss_pred cCCC
Q 000979 839 GPLG 842 (1202)
Q Consensus 839 G~~~ 842 (1202)
|+++
T Consensus 220 g~~~ 223 (277)
T PRK13652 220 GTVE 223 (277)
T ss_pred CCHH
Confidence 9864
No 148
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=348.93 Aligned_cols=220 Identities=24% Similarity=0.294 Sum_probs=181.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367899999884110 012458999999999999999999999999999999999876 4589999999875
Q ss_pred Cc-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQ-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
.. ...++.++|++|++. .+..+||+||+.+..... ....++.+++++++++.+++. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 123567999999963 233589999998865432 223444556788999999996 566665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 57889999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999864
No 149
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=342.48 Aligned_cols=218 Identities=23% Similarity=0.277 Sum_probs=180.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 378899998873 235899999999999999999999999999999999986531 4689999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCC
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLPG 752 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~ 752 (1202)
.++.. ..+++.++|++|++.+++.+||+||+.+....+.. ....++.++.++++++.+++.+ ..++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888899999999886543211 1122334456788999999854 23333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999854 899999999986 57789999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (250)
T PRK14247 221 GQIVEWGPTR 230 (250)
T ss_pred CeEEEECCHH
Confidence 8999999863
No 150
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.5e-37 Score=335.45 Aligned_cols=210 Identities=25% Similarity=0.348 Sum_probs=179.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 35788888763 2468999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
... ++.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+... ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 322 3578999999999999999999987654321 11 124678899999987766653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+||+++|.+ |++++.|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 99999999999999999999999999999999999999777999999999986 57789999999985 89999998754
No 151
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.1e-37 Score=355.96 Aligned_cols=205 Identities=21% Similarity=0.310 Sum_probs=177.4
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc----cCCc---c---cc-cceEEEee
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---E---TF-ARISGYCE 695 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~~-~~~~~~v~ 695 (1202)
+...+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|. ++.. . .. ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 56789999999999999999999999999999999999876 45899999996 2211 1 11 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000979 696 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775 (1202)
Q Consensus 696 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 775 (1202)
|++.++|.+||+||+.++...+ ..+.++++++++++++.+||.+..+... .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 2334556677899999999988777753 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||||||||+|||+.++..+++.|++++++ |+|+|++||+++ ++.+++||+++|++ |+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 99999999999999999999999999765 899999999986 57899999999985 89999999753
No 152
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=343.14 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=177.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999999874 235899999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ +||+||+.+...... .....+.++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988875 899999988754321 112233345678888888873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ ++.|||++||+++ ++.+.+||+++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 4 899999986
No 153
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=344.36 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=180.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478999998873 2468999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccc
Q 000979 683 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 746 (1202)
Q Consensus 683 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 746 (1202)
... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 234589999999999999999999986431100 000 111233457888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcce
Q 000979 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 825 (1202)
Q Consensus 747 ~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 825 (1202)
. ++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999765 899999999986 57789999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000979 826 LFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 826 v~~l~~gG~~~~~G~~~ 842 (1202)
+++|++ |++++.|+++
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 8999999864
No 154
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=343.61 Aligned_cols=214 Identities=25% Similarity=0.357 Sum_probs=179.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67889998874 2458999999999999999999999999999999999866 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ...++.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223467899999998888899999998864321 1112223445788999999987666653 5799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 761 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 761 rqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
|||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.||++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57789999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 999999864
No 155
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=342.01 Aligned_cols=215 Identities=24% Similarity=0.289 Sum_probs=178.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 3588999998873 23589999999999999999999999999999999997653 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++ +|++||+.+..... ....++.++.++++++.+++.+ ..++.
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 151 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP-- 151 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--
Confidence 987532 124567999999988888 89999999875432 1233333456788999998842 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 152 ---ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999864 799999999986 577889999999
Q ss_pred ecCCEEEEEcCC
Q 000979 830 KRGGQEIYVGPL 841 (1202)
Q Consensus 830 ~~gG~~~~~G~~ 841 (1202)
++ |++++.|++
T Consensus 227 ~~-G~i~~~~~~ 237 (258)
T PRK14268 227 LM-GELIEFGQT 237 (258)
T ss_pred EC-CEEEEeCCH
Confidence 84 899999986
No 156
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.4e-37 Score=341.96 Aligned_cols=214 Identities=22% Similarity=0.303 Sum_probs=180.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 46789998874 2358999999999999999999999999999999999876 45899999998653
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000979 684 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747 (1202)
Q Consensus 684 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 747 (1202)
. ...++.++|++|++.+++..|+.||+.++.... .....++.++.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123334445678899999998766654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+||+
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 577889999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999885
No 157
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-37 Score=332.35 Aligned_cols=225 Identities=23% Similarity=0.308 Sum_probs=185.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C-c-eEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 680 (1202)
++.+|++.++... .+...+++||||++++||++||+|.|||||||+.+.|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678998888642 234679999999999999999999999999999999999765 2 3 45689999998
Q ss_pred cCCc---c---c-ccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 681 PKKQ---E---T-FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~~---~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++-. + . +.+.+++++|++ .+.|.+||.+.+.-......... .+++.++++.++++.+|+.+........
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 6432 1 1 235799999996 57888999998876554332111 3455667788999999998764443333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+++|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++++ .|.++|++|||+. -+.++||||.||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999997 4889999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
.|++|..|+++
T Consensus 229 -aG~iVE~g~~~ 239 (316)
T COG0444 229 -AGRIVEEGPVE 239 (316)
T ss_pred -CcEEEEeCCHH
Confidence 48999999974
No 158
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=342.49 Aligned_cols=218 Identities=24% Similarity=0.264 Sum_probs=179.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899999874 235899999999999999999999999999999999986542 3589999999
Q ss_pred ccCC--c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKK--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 1 23456799999999999999999999886543211 1122333455788899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 223 ~-G~i~~~~~~~ 233 (253)
T PRK14267 223 L-GKLIEVGPTR 233 (253)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 159
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.3e-37 Score=339.81 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=177.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35789988874 24589999999999999999999999999999999998421256899999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCC--C--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. . .+..++|++|++.+++.+|++|++.+....... . ..+.++..++++++++.+++. +..++.+. .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 233489999999999999999999876432211 0 112233345678899999997 34454321 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG 833 (1202)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 46666 799999984 8
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999986
No 160
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=349.28 Aligned_cols=224 Identities=18% Similarity=0.225 Sum_probs=181.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-c-eEEEEEEEcCcc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~-~~~G~i~~~g~~ 681 (1202)
++++|+++.|+.. .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 7899999988521 1225699999999999999999999999999999999997642 2 358999999987
Q ss_pred CCcc---c----ccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 682 KKQE---T----FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 682 ~~~~---~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
+... . .++.++||+|++ .+.|.+|+.+++........ ....++.+++++++++.+||.+..+.... .
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~--~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV--Y 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--C
Confidence 6431 1 224699999998 47889999998876543321 22344556678999999999753221111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+++|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++++ .|.|+|++|||++ .+.+.+||+++|.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 468999999999999999999999999999999999999999999999976 4899999999986 4678999999998
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
+|+++..|+++
T Consensus 229 ~G~ive~g~~~ 239 (326)
T PRK11022 229 AGQVVETGKAH 239 (326)
T ss_pred CCEEEEECCHH
Confidence 48999999864
No 161
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-38 Score=354.94 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=180.4
Q ss_pred CCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc
Q 000979 599 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 678 (1202)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 678 (1202)
..+..++|+||+++|. +++++|+++||+|++||-+||+|+|||||||+||+|.+..+ .+|+|.+|
T Consensus 347 ~~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~Id 411 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILID 411 (591)
T ss_pred cCCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEEC
Confidence 3456799999999995 34568999999999999999999999999999999987654 47999999
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------Cccccccc
Q 000979 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLV 748 (1202)
Q Consensus 679 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~ 748 (1202)
|.++++ +..|+.+||||||..+|. -||.+|+.|+. +..+.++ +.++.+..++ .+-.+|.+
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhH
Confidence 998754 567899999999888875 69999999863 2334333 3444454444 34566778
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
|..|. .|||||||||+||||+++||+|+++|||||+||+++++++++.+++. ..|+|+|++.|+.+ ....||+|++
T Consensus 482 GerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIV 557 (591)
T ss_pred hhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEE
Confidence 87664 59999999999999999999999999999999999999999999984 46899999999975 6899999999
Q ss_pred EecCCEEEEEcCCCc
Q 000979 829 MKRGGQEIYVGPLGR 843 (1202)
Q Consensus 829 l~~gG~~~~~G~~~~ 843 (1202)
|++ |++...|+-++
T Consensus 558 l~n-G~v~e~gth~e 571 (591)
T KOG0057|consen 558 LDN-GTVKEYGTHSE 571 (591)
T ss_pred EEC-CeeEEeccHHH
Confidence 986 79999998643
No 162
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=345.89 Aligned_cols=216 Identities=26% Similarity=0.305 Sum_probs=181.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++||++.|+. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3789999998841 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. .++..||.||+.+..... ....++.+++++++++.+||.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 666789999998865432 1233444566889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999986 34 46999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13635 221 EGTPE 225 (279)
T ss_pred ECCHH
Confidence 99864
No 163
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.6e-37 Score=339.91 Aligned_cols=216 Identities=25% Similarity=0.314 Sum_probs=179.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 67889998873 2458999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++.+.+++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 1234699999999999999999999886432100 0 011223345688999999998766665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999865 789999999986 57789999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99999864
No 164
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.4e-37 Score=350.77 Aligned_cols=225 Identities=20% Similarity=0.290 Sum_probs=184.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 681 (1202)
-++++|+++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899999988531 12356999999999999999999999999999999999986532 238999999988
Q ss_pred CCc---cc---c-cceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 682 KKQ---ET---F-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 682 ~~~---~~---~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
+.. .. + ++.++||+|++ .+.|.+|+.+++........ ..+.++.++++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 643 11 2 24799999998 68899999999987654321 2344455567889999999975433221 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+++||||||||++|||||+.+|++|++||||+|||+.++..++++|++++++ |.|+|++|||++ .+.+++||+++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999765 899999999986 4677899999998
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
+|+++..|+++
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999864
No 165
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-37 Score=332.73 Aligned_cols=209 Identities=24% Similarity=0.330 Sum_probs=173.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~-------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYGE-------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeCC-------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 357888887731 12 39999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|++||+.+....+. .. .+..+++++++++.+++.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3 1234679999999999999999999987543211 11 1223456789999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 7887654
No 166
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=345.16 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 57889998873 2348999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ...++.++|++|++.. +...|+.||+.+..... ....++.++.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1245679999999753 34568999998764332 123333445678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |+++.
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99863
No 167
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=342.99 Aligned_cols=218 Identities=25% Similarity=0.341 Sum_probs=181.0
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67889998873 2468999999999999999999999999999999999865 45899999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
. ...++.++|++|++.+++.+|+.||+.++...... .....+..++.++++++.+++.+..++. .+.||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23456789999999888889999999875211000 0111122345578899999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999986 57889999999985 7999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8753
No 168
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=344.87 Aligned_cols=215 Identities=28% Similarity=0.352 Sum_probs=180.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 57899999874 12358999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. ...++.++|++|++. .+...||.||+.+..... ....++.++++.++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 333479999998764321 1233444556889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99864
No 169
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.1e-37 Score=342.52 Aligned_cols=224 Identities=23% Similarity=0.287 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+.....+ ..+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67899999884210000 0123579999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. ..++.++|++|++ .+.+.+||+||+.+...... ....++.+++++++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 46678999999987543211 122233445678999999995 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.+|++++|+ +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 79999999999999999999999999999999999999999999998765 899999999986 5677899999998 48
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+++
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999999864
No 170
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.1e-37 Score=343.13 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=182.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 681 (1202)
-++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478899998873 245899999999999999999999999999999999986543 236999999987
Q ss_pred CCc--------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000979 682 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 748 (1202)
Q Consensus 682 ~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 748 (1202)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999999999999999875421100 00112233456889999999987666653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
..||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999754 899999999986 4788999999
Q ss_pred EEecCCEEEEEcCCCc
Q 000979 828 LMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~~~ 843 (1202)
+|.+ |++++.|++++
T Consensus 225 ~l~~-g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQQ 239 (262)
T ss_pred EEEC-CEEEEeCCHHH
Confidence 9985 89999998753
No 171
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-37 Score=348.10 Aligned_cols=226 Identities=23% Similarity=0.243 Sum_probs=185.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|+++.|+...... ...+.+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478999999885321100 00123579999999999999999999999999999999999876 3589999999876
Q ss_pred Cc------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 683 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
.. ..+++.++||+|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 43 12456799999997 58889999999977544321 2334455667899999999963 44544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++||||||||++|||||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 689999999999999999999999999999999999999999999999764 999999999986 46678999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999864
No 172
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-37 Score=327.16 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=164.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 681 (1202)
.++|+||+|.|+.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 47899999999632 13457999999999999999999999999999999999986532 568999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 682 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
... ...++.++|++|++.+++.+||+||+.+..... .+.. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234667999999999999999999998753210 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777777654467889999999985 898876
Q ss_pred c
Q 000979 839 G 839 (1202)
Q Consensus 839 G 839 (1202)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=343.58 Aligned_cols=219 Identities=26% Similarity=0.371 Sum_probs=181.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 488999998873 2468999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++.+++.+|+.||+.+....... ........+++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321100 00111223455788999999987666653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999984 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|++++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 998643
No 174
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-37 Score=345.93 Aligned_cols=218 Identities=23% Similarity=0.324 Sum_probs=178.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+... ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67899999884210 011358999999999999999999999999999999999876 45899999998754
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000979 684 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 753 (1202)
Q Consensus 684 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++ .+++ .||+||+.+..... ..+.++.++.++++++.+++.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 12456799999996 3444 69999998865322 1223334456788999999963 44544 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777899999999986 57788999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (280)
T PRK13649 222 KLVLSGKPK 230 (280)
T ss_pred EEEEeCCHH
Confidence 999999863
No 175
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-37 Score=340.80 Aligned_cols=219 Identities=21% Similarity=0.262 Sum_probs=179.6
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEE
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIT 676 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~ 676 (1202)
....++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345689999999884 1358999999999999999999999999999999999754 1 13589999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 000979 677 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSL 747 (1202)
Q Consensus 677 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 747 (1202)
++|.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 234567999999988887 899999988653221 1233334456788999998742 23332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 35799999999999999999999999999999999999999999999985 4789999999986 5778899999
Q ss_pred EEecCCEEEEEcCCC
Q 000979 828 LMKRGGQEIYVGPLG 842 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~~ 842 (1202)
+|++ |+++..|+++
T Consensus 227 ~l~~-G~i~~~g~~~ 240 (260)
T PRK10744 227 FMYL-GELIEFGNTD 240 (260)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 8999999863
No 176
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.2e-37 Score=336.65 Aligned_cols=212 Identities=25% Similarity=0.317 Sum_probs=175.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35788888874 2468999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. .. .++..+++++.++ +.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 31 124578999999999999999999988654321 11 1223466777776 45544554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999985 89999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|+.++
T Consensus 213 ~~~~~~ 218 (230)
T TIGR03410 213 SGAGDE 218 (230)
T ss_pred ECCHHH
Confidence 998753
No 177
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=339.13 Aligned_cols=220 Identities=23% Similarity=0.309 Sum_probs=177.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~---~~~~~G~i~~~ 678 (1202)
..++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 4589999999884 2358999999999999999999999999999999999742 11358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+..+++++++++.+++.+....... ...
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 134567999999998887 599999988754321 11222334567888999988542111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 57789999999985 8
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|++
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 99999886
No 178
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=339.55 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=179.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478899999874 235899999999999999999999999999999999976532 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988754321 1123334456788899998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 45799999999999999999999999999999999999999999999985 4689999999986 5778999999997
Q ss_pred -----cCCEEEEEcCCC
Q 000979 831 -----RGGQEIYVGPLG 842 (1202)
Q Consensus 831 -----~gG~~~~~G~~~ 842 (1202)
+.|++++.|+++
T Consensus 222 ~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 222 LEATGKPGRLVEIDDTE 238 (258)
T ss_pred cccCCCCceEEecCCHH
Confidence 258999999863
No 179
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=342.66 Aligned_cols=220 Identities=21% Similarity=0.271 Sum_probs=182.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+.++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 4688999999884 2458999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
+.. ...++.++|++|++.+++.+|++||+.+......+ .....+..++.++++++.+++.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 532 22345789999999998889999999875211100 0001122345678899999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.+|++++|.+ |+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 58899999999984 8999
Q ss_pred EEcCCCc
Q 000979 837 YVGPLGR 843 (1202)
Q Consensus 837 ~~G~~~~ 843 (1202)
..|++++
T Consensus 224 ~~g~~~~ 230 (265)
T PRK10253 224 AQGAPKE 230 (265)
T ss_pred EeCCHHH
Confidence 9998753
No 180
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=338.07 Aligned_cols=220 Identities=21% Similarity=0.283 Sum_probs=176.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899998873 245899999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.+..+.... ...+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999988654331 11122234557889999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.|||+++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5799999999986 57789999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|+++
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99999863
No 181
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.8e-37 Score=341.38 Aligned_cols=218 Identities=28% Similarity=0.400 Sum_probs=180.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 57889998874 2468999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
. ...++.++|++|++.+++.+||+||+.+... .+........+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 2234568999999877888999999987531 100000111223346788999999987666653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999777899999999987 57789999999985 7999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
+.++
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 8643
No 182
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=342.76 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=181.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5889999998741 12458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+..++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234677999999974 567789999998865322 1233344556789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||+++ ++ ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 34 57999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 99863
No 183
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=336.31 Aligned_cols=222 Identities=21% Similarity=0.277 Sum_probs=179.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~ 678 (1202)
..++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++
T Consensus 3 ~~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 3 NKVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred cEEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 3578999999884 2358999999999999999999999999999999999854 21 257999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ...++.++|++|++.+++.+|++||+.+...... .....+.+++++++++.+++.+....... ..+
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 2346779999999999999999999987643321 11223334557888999998541111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|. +|
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MG 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CC
Confidence 57999999999999999999999999999999999999999999999965 689999999986 5778999999998 48
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 224 ~i~~~~~~~ 232 (252)
T PRK14256 224 DLVECGETK 232 (252)
T ss_pred EEEEeCCHH
Confidence 999999864
No 184
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-37 Score=323.47 Aligned_cols=190 Identities=58% Similarity=0.938 Sum_probs=162.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999988521 112468999999999999999999999999999999999753235689999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhH
Confidence 4 34566799999999999999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877799999999998644678899999998548998876
No 185
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.2e-36 Score=332.67 Aligned_cols=213 Identities=25% Similarity=0.355 Sum_probs=176.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47899999987421 011358999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+.+++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 257999999999999999999998865432 1223344566889999999987666653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 34 56999999985 78
Q ss_pred EEE
Q 000979 835 EIY 837 (1202)
Q Consensus 835 ~~~ 837 (1202)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
No 186
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.4e-37 Score=329.45 Aligned_cols=210 Identities=23% Similarity=0.313 Sum_probs=175.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. +++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 ~~~~~l~~~~~~---------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYEH---------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeCC---------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 357888887731 3579999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|+.||+.+...... ... ...+++++++++.+++.+..++. ++.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHH
Confidence 3 2345679999999999999999999987543211 111 12244578899999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|+ +|+++..|+
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999999999999999999999999999998764 899999999986 5678899999998 489998875
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-37 Score=373.03 Aligned_cols=222 Identities=21% Similarity=0.301 Sum_probs=186.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+||||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378999999873 2468999999999999999999999999999999999876434689999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
... ..++.++||+|++.+++.+||+||+.+....+.....+.++.+++++++++.+++.+..++.+ ++|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124569999999999999999999988653321111123334456889999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899999
Q ss_pred cCCCcc
Q 000979 839 GPLGRH 844 (1202)
Q Consensus 839 G~~~~~ 844 (1202)
|++.+.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998653
No 188
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=347.58 Aligned_cols=226 Identities=15% Similarity=0.196 Sum_probs=180.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--ceEEEEEEEcCcc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYP 681 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~ 681 (1202)
++++|+++.|+.. .+...+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 7889999988531 1345699999999999999999999999999999999997642 2458999999987
Q ss_pred CCc---cc----ccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCCcccccccc
Q 000979 682 KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVG 749 (1202)
Q Consensus 682 ~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 749 (1202)
+.. .. .++.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+..+....
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 642 11 1347999999975 6788999999976432110000 1112345568899999999753221111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
.+++|||||||||+|||||+.+|++|+|||||+|||+.++..++++|+++.++ |.|+|++|||++ .+.+++||+++
T Consensus 155 --~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 155 --FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred --CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 24689999999999999999999999999999999999999999999999864 899999999986 57789999999
Q ss_pred EecCCEEEEEcCCC
Q 000979 829 MKRGGQEIYVGPLG 842 (1202)
Q Consensus 829 l~~gG~~~~~G~~~ 842 (1202)
|. +|+++..|+.+
T Consensus 232 m~-~G~ive~g~~~ 244 (330)
T PRK15093 232 LY-CGQTVETAPSK 244 (330)
T ss_pred EE-CCEEEEECCHH
Confidence 98 48999999864
No 189
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9e-37 Score=334.46 Aligned_cols=201 Identities=29% Similarity=0.412 Sum_probs=169.6
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEee-cCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 703 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 703 (1202)
+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999876 458999999986432 23456789997 55677888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 783 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPt 783 (1202)
+|++||+.+..... ....++.++.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 1223334456788999999987777654 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 784 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 784 sgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999985 7888765
No 190
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-37 Score=343.97 Aligned_cols=218 Identities=24% Similarity=0.285 Sum_probs=181.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCce-EEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 681 (1202)
.++++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999998741 12358999999999999999999999999999999999865321 13899999988
Q ss_pred CCc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
... ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.+++.+..++. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 567799999998764322 233444556788999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..||++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 34 67999999984 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|+++
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 999863
No 191
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.2e-36 Score=333.96 Aligned_cols=214 Identities=26% Similarity=0.387 Sum_probs=181.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35788888874 2358999999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. +.||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999987654321 222333456788999999987666653 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 5778899999998 4899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 216 ~ 216 (237)
T TIGR00968 216 D 216 (237)
T ss_pred H
Confidence 4
No 192
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=331.73 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=180.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
+.++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35788888873 2458999999999999999999999999999999999876 45799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.. +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 235678999999999988999999988654331 222333456788999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998765 899999999986 57789999999985 899998874
No 193
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=340.27 Aligned_cols=216 Identities=24% Similarity=0.294 Sum_probs=180.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4889999998841 11348999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. +++..|+++|+.+..... ....++..+.++++++.+++.+..+.. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677789999998865322 123333445678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+||+++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 455 4999999985 89999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99874
No 194
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=337.60 Aligned_cols=217 Identities=23% Similarity=0.262 Sum_probs=178.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++||++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 18 ~~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 18 IKMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred ceEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 3689999999884 24589999999999999999999999999999999997642 1368999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 749 (1202)
|.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+.+++++++++.+++.+. .+..
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 160 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP-- 160 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC--
Confidence 987642 2345679999999888874 999999987543311 11222334567889999998542 2322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|
T Consensus 161 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l 235 (267)
T PRK14235 161 ---GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFF 235 (267)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999865 789999999986 577889999999
Q ss_pred ecCCEEEEEcCC
Q 000979 830 KRGGQEIYVGPL 841 (1202)
Q Consensus 830 ~~gG~~~~~G~~ 841 (1202)
++ |+++..|++
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14235 236 HL-GNLVEVGDT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999975
No 195
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=350.94 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=180.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+|+|+. .+.++|+|+||++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 7899999999973 23468999999999999999999999999999999999766 5589999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 752 (1202)
.. ..+++.+++++|...+|. -|+|+||..+. ++.++++ +.++++.+||++. .|+.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 43 346778999999877765 79999998753 3344443 5677888887654 344566544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.+ +|+|+|++||+.. -.+.||||++|++
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 6799999999999999999999999999999999999999999998765 4899999999986 4789999999985
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|+++..|..++
T Consensus 548 Gkiie~G~~~~ 558 (573)
T COG4987 548 GKIIEEGTHAE 558 (573)
T ss_pred CeeeecCCHHh
Confidence 89999998743
No 196
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-37 Score=339.68 Aligned_cols=220 Identities=26% Similarity=0.353 Sum_probs=178.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc------eEEEEEEE
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 677 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~------~~~G~i~~ 677 (1202)
++++|+++++. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 57889998773 246899999999999999999999999999999999986532 12799999
Q ss_pred cCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 678 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 678 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+|.+... ...++.++|++|++..++.+||+||+.+....... .....++.++.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23455689999998766679999999875321110 0111122345678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhc
Q 000979 754 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 823 (1202)
..||||||||++|||||+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998766 899999999986 577899
Q ss_pred ceEEEEecCCEEEEEcCCCc
Q 000979 824 DELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|++++|.+ |+++..|++++
T Consensus 223 d~i~~l~~-G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPAD 241 (272)
T ss_pred CEEEEEEC-CeEEEecCHHH
Confidence 99999985 89999998753
No 197
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.9e-36 Score=382.43 Aligned_cols=213 Identities=26% Similarity=0.401 Sum_probs=175.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+.+ +++.+|+|+|++++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 476 ~~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~ 543 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGV 543 (711)
T ss_pred CCeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCE
Confidence 3569999999999632 12468999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+++.++||+|++.+++ .|++|||.++. ++.+++ .+.++++..++.+ -.|+.+|.
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 8654 456788999999999886 79999998752 122322 2556666666543 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|+||+||||||+||+++++.+.+ .. ..+++|+|++||+++ ..+.+|+|++|+
T Consensus 614 ~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999988 22 235899999999985 567899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 688 ~-G~ive~Gt~~ 698 (711)
T TIGR00958 688 K-GSVVEMGTHK 698 (711)
T ss_pred C-CEEEEeeCHH
Confidence 4 8999999863
No 198
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-37 Score=342.88 Aligned_cols=220 Identities=21% Similarity=0.291 Sum_probs=181.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+... ....+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478999999985210 0013468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQ----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ...++.++|++|++. .+...||.||+.|..... .....+.+++++++++.+||.+..++.+ +.||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234677999999974 233469999998875422 2233444566889999999988777753 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 454 4999999985 8999
Q ss_pred EEcCCC
Q 000979 837 YVGPLG 842 (1202)
Q Consensus 837 ~~G~~~ 842 (1202)
..|+++
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 999864
No 199
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-37 Score=352.07 Aligned_cols=191 Identities=23% Similarity=0.376 Sum_probs=167.8
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.|+.. ...+++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345789999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+.++..+.+.|++++++ |+|+|++||+++ ++.+++|++++|++ |+++..|+++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999765 899999999986 68899999999985 8999999874
No 200
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=334.58 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=176.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCccC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 682 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 57889998884 24589999999999999999999999999999999997532 24689999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~ 755 (1202)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+ ..+.. .+.
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 43 234567999999998887 699999988654331100 11233445788999999853 22322 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+.+|++++|++ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999986 57789999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
+..|++
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 999985
No 201
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=336.65 Aligned_cols=223 Identities=22% Similarity=0.253 Sum_probs=180.4
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEE
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIT 676 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~ 676 (1202)
....++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999999873 24589999999999999999999999999999999997642 14689999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 677 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 677 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++|.+... ...++.++|++|++.+++ .||+||+.++.... .....++.+.+++++++.+++.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 124567999999988887 69999998865322 111233344567888999988532111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~- 236 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY- 236 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-
Confidence 246799999999999999999999999999999999999999999999985 4799999999986 5778999999998
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
+|+++..|++.
T Consensus 237 ~G~i~~~g~~~ 247 (267)
T PRK14237 237 LGDLIEYDKTR 247 (267)
T ss_pred CCEEEEeCCHH
Confidence 48999999863
No 202
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=339.38 Aligned_cols=216 Identities=22% Similarity=0.257 Sum_probs=176.3
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4589999999884 24589999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... +.++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234567999999998887 499999998764321 111 22345677888887642 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 789999999986 678999999999
Q ss_pred ec----------CCEEEEEcCCC
Q 000979 830 KR----------GGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~----------gG~~~~~G~~~ 842 (1202)
++ .|+++++|+++
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 85 36789999863
No 203
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=335.00 Aligned_cols=210 Identities=25% Similarity=0.336 Sum_probs=176.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 478899998873 2358999999999999999999999999999999999866 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .+.+++++++.+++. +..++. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988886 69999998754321 1 1 123467889999996 444543 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57788999999985 79999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|++.
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 98863
No 204
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-36 Score=351.88 Aligned_cols=195 Identities=23% Similarity=0.375 Sum_probs=169.7
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.|+.... ...+.+++++++++.+++.+..++.. +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12234456889999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+.++..+.+.|++++++ |+|+|++||+++ ++..++|++++|++ |+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999999765 899999999986 57889999999985 8999999863
No 205
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=342.95 Aligned_cols=221 Identities=20% Similarity=0.296 Sum_probs=178.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+... .....+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 74 (289)
T PRK13645 5 KDIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYA 74 (289)
T ss_pred ceEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 3588999999884210 001348999999999999999999999999999999999876 458999999987
Q ss_pred CCc--------ccccceEEEeecCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 000979 682 KKQ--------ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~--------~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 751 (1202)
+.. ...++.++|++|++.. +...|++||+.+..... ....++..++++++++.+++. +..++.
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~---- 147 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS---- 147 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC----
Confidence 531 2345679999999732 22369999998865322 122333445678899999994 555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+
T Consensus 148 -~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 148 -PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 5788999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+++
T Consensus 226 ~-G~i~~~g~~~ 236 (289)
T PRK13645 226 E-GKVISIGSPF 236 (289)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999998853
No 206
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1e-36 Score=332.70 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=167.4
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764322 12489999999999999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
+...... .....++.+++++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 12233344556789999999987666653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 792 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 792 ~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57889999999985 899988865
No 207
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.4e-36 Score=382.19 Aligned_cols=211 Identities=28% Similarity=0.390 Sum_probs=177.9
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. .++.+|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 449 ~~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~ 515 (686)
T TIGR03797 449 SGAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQ 515 (686)
T ss_pred CceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCE
Confidence 346999999999952 22458999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. + .+++ .+.++++..++.+ -.|+.+|.
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred EcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccC
Confidence 8754 457889999999999886 69999998752 1 2332 2556666666553 34677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|++++|+
T Consensus 585 ~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~ 658 (686)
T TIGR03797 585 GG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD 658 (686)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 579999999985 567899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 659 ~-G~iv~~G~~~ 669 (686)
T TIGR03797 659 A-GRVVQQGTYD 669 (686)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999863
No 208
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=300.70 Aligned_cols=215 Identities=21% Similarity=0.304 Sum_probs=180.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.+|++..| +...+|++||++.+.|+++.|+|.|||||||+|+||.=+.. |..|.|.+||..+.
T Consensus 7 l~v~dlHK~~-------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~ 71 (256)
T COG4598 7 LEVEDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIR 71 (256)
T ss_pred eehhHHHhhc-------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEE
Confidence 5566666554 44568999999999999999999999999999999987655 55899999997542
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000979 684 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747 (1202)
Q Consensus 684 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 747 (1202)
- ...|...|+|+|+.++++.+||.||+.-+..--+ ..++.+..++.+..++.+|+.+.+|..
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~Y 149 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAY 149 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcC
Confidence 1 1134457999999999999999999865422111 345556667788999999999888865
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
+..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|.+++||.+. ...+...+++
T Consensus 150 -----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~ 223 (256)
T COG4598 150 -----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVI 223 (256)
T ss_pred -----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheE
Confidence 3469999999999999999999999999999999999999999999999999999999999986 4667889999
Q ss_pred EEecCCEEEEEcCCC
Q 000979 828 LMKRGGQEIYVGPLG 842 (1202)
Q Consensus 828 ~l~~gG~~~~~G~~~ 842 (1202)
.|++ |.+-..|||+
T Consensus 224 fLh~-G~iEE~G~P~ 237 (256)
T COG4598 224 FLHQ-GKIEEEGPPE 237 (256)
T ss_pred Eeec-ceecccCChH
Confidence 9985 8999999984
No 209
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=331.92 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=177.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|+. + ..|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 578999998841 1 238999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 234578999999999999999999987532111 11 1223456889999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|.+ |++++.|++
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 3
No 210
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-36 Score=320.29 Aligned_cols=190 Identities=49% Similarity=0.836 Sum_probs=163.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCceEEEEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 680 (1202)
.++++|+++.|+... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478999999985210 011246899999999999999999999999999999999987 5 56899999999
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
+......++.++|++|++.+++.+|++||+.+...+ . .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHH
Confidence 875444567899999999999999999999764210 0 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986557788999999985 7888764
No 211
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-36 Score=330.54 Aligned_cols=213 Identities=26% Similarity=0.380 Sum_probs=179.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. + ++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~------------~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWK------------E--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeC------------C--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcC
Confidence 35678888763 1 26999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 684 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 684 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
. ...++.++|++|++.+++.+|+.||+.+..... ..+..+.++.+.++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 3 123567999999999999999999998765332 1223344456788999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 57788999999985 899999986
Q ss_pred C
Q 000979 842 G 842 (1202)
Q Consensus 842 ~ 842 (1202)
+
T Consensus 215 ~ 215 (235)
T cd03299 215 E 215 (235)
T ss_pred H
Confidence 3
No 212
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.3e-37 Score=380.60 Aligned_cols=211 Identities=25% Similarity=0.403 Sum_probs=176.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|.++ +++++|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999998663 1245899999999999999999999999999999999987 4 37999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 751 (1202)
+++ ..+|+.++||+|++.+++ .|++|||.++. ++.++++ ++++++..++. +-.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 457889999999999886 69999999852 2334333 44455554443 3457888876
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
| ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 5 4699999999999999999999999999999999999999999999874 5899999999985 5678999999984
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 8999999853
No 213
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.6e-36 Score=326.38 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=161.5
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC---c----ccccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 701 (1202)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 458999999999999999999999999999999999876 45899999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
+.+|++||+.+..... .....+..++++++++.+++.+..++.+ ++||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1223334556789999999987777653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
||+|||+.++..+.+.|+++.++|.|+|++||++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 45789999875
No 214
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=335.42 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=177.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999999874 2358999999999999999999999999999999999754 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. ||+||+.+...... ....++.+++++++++.+++.+....... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345679999999988875 99999988653321 11223334557788999888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+||+++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 57789999999984 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 232 i~~~g~~~ 239 (259)
T PRK14274 232 LVECNDTN 239 (259)
T ss_pred EEEECCHH
Confidence 99999863
No 215
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=333.79 Aligned_cols=216 Identities=21% Similarity=0.234 Sum_probs=177.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478899998873 245899999999999999999999999999999999975431 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++.+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999998887 899999998654321 1122334456778899998742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+||+++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999866 689999999986 5788899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 221 ~-G~i~~~~~~~ 231 (251)
T PRK14270 221 M-GDLIEFNKTE 231 (251)
T ss_pred C-CeEEEeCCHH
Confidence 5 8999999864
No 216
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-36 Score=337.59 Aligned_cols=225 Identities=20% Similarity=0.253 Sum_probs=180.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++||+++|..+... ...+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 37899999988421100 00112468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCC
Q 000979 683 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 756 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~L 756 (1202)
.. ...++.++|++|++. +++.+|+.|++.+...... .....+.++.++++++.+++. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456899999875 5678899999987654321 122333445678999999994 444543 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999764 899999999986 5778899999998 4899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|+++
T Consensus 229 ~~~~~~~ 235 (267)
T PRK15112 229 VERGSTA 235 (267)
T ss_pred EecCCHH
Confidence 9988753
No 217
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-36 Score=326.13 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=163.2
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
|+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999876 458999999987531 1235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.+..... .....+++++++++.+++.+..+.. +..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2223345678899999998766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 57788999999985 7888765
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=333.46 Aligned_cols=216 Identities=26% Similarity=0.301 Sum_probs=175.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 679 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999999874 2358999999999999999999999999999999999732 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 234567999999998887 899999988654321 1122233455778888888743 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+||+++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5788999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+.+
T Consensus 222 ~-G~i~~~g~~~ 232 (252)
T PRK14239 222 D-GDLIEYNDTK 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 219
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-36 Score=332.02 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=176.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478999999874 135899999999999999999999999999999999964321 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ +|++||+.+...... ....++.++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 134567999999988887 899999998654321 1122333456778888888742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
No 220
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=338.87 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=181.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4789999998841 112358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234677999999974 567789999998765322 123334445678999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999986 34 46999999985 79999
Q ss_pred EcCCC
Q 000979 838 VGPLG 842 (1202)
Q Consensus 838 ~G~~~ 842 (1202)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99863
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=334.64 Aligned_cols=217 Identities=21% Similarity=0.283 Sum_probs=178.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-e--EEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478999999874 235899999999999999999999999999999999975532 2 479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .....+.++.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999988654321 1122333455778888888742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999987 6888999999997
Q ss_pred c----CCEEEEEcCCC
Q 000979 831 R----GGQEIYVGPLG 842 (1202)
Q Consensus 831 ~----gG~~~~~G~~~ 842 (1202)
+ +|+++..|++.
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999999863
No 222
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=366.92 Aligned_cols=220 Identities=26% Similarity=0.322 Sum_probs=185.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378899998873 2468999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
... ..++.++|++|++.+++.+||+||+.++...+.. ...+.++.+++++++++.+++.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1245689999999999999999999886432210 11223334456889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57789999999985 89999
Q ss_pred EcCCCcc
Q 000979 838 VGPLGRH 844 (1202)
Q Consensus 838 ~G~~~~~ 844 (1202)
.|++.+.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9998653
No 223
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=341.32 Aligned_cols=222 Identities=18% Similarity=0.229 Sum_probs=180.3
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|++++|.. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46899999999841 224589999999999999999999999999999999997532 2457999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS-ETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
|.++.. ...++.++||+|++.+++ .|++||+.|+.... .... +..++.++++++.+++.+..++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998742 235678999999998875 79999999865322 1222 222344678888888754333333332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+.+||+++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999865 799999999986 56778999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|++.
T Consensus 300 G~i~e~g~~~ 309 (329)
T PRK14257 300 GWIEEAGETK 309 (329)
T ss_pred CEEEEeCCHH
Confidence 8999999974
No 224
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.7e-36 Score=378.83 Aligned_cols=212 Identities=25% Similarity=0.391 Sum_probs=177.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. ++.+|+|+|+++++||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCE
Confidence 457999999999951 2358999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++.. ++.++++ +.++++..++. .-.|+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC
Confidence 7643 457889999999999886 599999987521 1233322 44555555543 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++ +|+|+|++||+++ ..+.+|++++|+
T Consensus 608 ~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 EG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 54 569999999999999999999999999999999999999999999875 4799999999985 568899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+.
T Consensus 683 ~-G~i~~~G~~ 692 (708)
T TIGR01193 683 H-GKIIEQGSH 692 (708)
T ss_pred C-CEEEEECCH
Confidence 5 899999985
No 225
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-35 Score=337.59 Aligned_cols=202 Identities=20% Similarity=0.369 Sum_probs=168.5
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc----cccceEEEeecC---CCCCCCC
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFV 704 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~l 704 (1202)
++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||++.... ..+..++|||.| +.+++.+
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 789999999999999999999999999999999655 3489999999986542 345678999987 4678899
Q ss_pred CHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 705 TIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
+|+||+.++...+... -.+....++.+++..+.+++.... +.. +..||||.+|||.|||.|..+|+||+|||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 9999998873222111 234444556788899999885332 222 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||.|.|.-++.+|.++|++++++|++||+++-++. |+..+||||++|++ |+++..=+.+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 99999999999999999999999999999999985 89999999999985 8998754443
No 226
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=332.50 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378899998873 235899999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... .....
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 87542 134567999999998887 899999988654321 1122233445778888888854211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 789999999986 57889999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
++..|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14262 223 LIEYGPTR 230 (250)
T ss_pred EEEecCHH
Confidence 99999863
No 227
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-36 Score=331.83 Aligned_cols=219 Identities=18% Similarity=0.240 Sum_probs=175.4
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--c-eEEEEEEEcCc
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISGY 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g~ 680 (1202)
-+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46788888773 24589999999999999999999999999999999997542 1 35899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 681 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 681 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
++.. ...++.++|++|++.+++. |++||+.+....+.. ....+..++.++++++.+++.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1246679999999988875 999999886433211 112223345578889999986521111111 2357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
+..|++
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 999885
No 228
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.6e-37 Score=380.60 Aligned_cols=216 Identities=28% Similarity=0.428 Sum_probs=179.7
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
....++|+||+|.|+. ++++|+|+||+++|||.+||+||||||||||+++|.|..+ +.+|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg 390 (567)
T COG1132 325 TIGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDG 390 (567)
T ss_pred CCCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECC
Confidence 3456999999999962 3568999999999999999999999999999999999876 4589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCC
Q 000979 680 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 680 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
.+++. ..+|+.++||+|++.+|. .||+||+.++. ++.++++..+. +++.++. +.+..|+.+|..
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~ 462 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER 462 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHHHHHHHHHhChHHHHHh--CcccccceecCC
Confidence 88754 567889999999999998 89999999863 22333332221 2222332 344678999855
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
| ..||||||||++|||||++||+||+||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|+|++|++
T Consensus 463 G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 G-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred C-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999999876 6789999999986 3455999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 539 -G~i~e~G~h~ 548 (567)
T COG1132 539 -GRIVERGTHE 548 (567)
T ss_pred -CEEEEecCHH
Confidence 8999999974
No 229
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-36 Score=331.17 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=175.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 477899998874 245899999999999999999999999999999999976532 3579999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 680 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 680 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+..++++++.++.+++.+....... ....+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87531 234567999999998887 899999987643221 11122334556778888887532111111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 689999999986 57888999999985 899
Q ss_pred EEEcCC
Q 000979 836 IYVGPL 841 (1202)
Q Consensus 836 ~~~G~~ 841 (1202)
+..|++
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999985
No 230
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=334.11 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=177.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999873 23589999999999999999999999999999999998542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987642 1346789999999988885 99999988654321 1122223355788888888853 22222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ ++.+.+|++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999975 789999999986 577899999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++..|+++
T Consensus 241 ~~-G~i~~~g~~~ 252 (272)
T PRK14236 241 YM-GKLVEYGDTD 252 (272)
T ss_pred EC-CEEEecCCHH
Confidence 85 8999999863
No 231
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=331.74 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=176.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCce---EEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477899998873 2458999999999999999999999999999999999865322 379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 750 (1202)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1345679999999999999999999987653221 112223344566677777653 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.|||+++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+++
T Consensus 222 ~-G~i~~~~~~~ 232 (252)
T PRK14272 222 V-GDLVEHGPTD 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 232
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.5e-36 Score=333.31 Aligned_cols=216 Identities=24% Similarity=0.256 Sum_probs=176.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 681 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478999999874 1358999999999999999999999999999999999876 458999999986
Q ss_pred ----CCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000979 682 ----KKQE---T----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 747 (1202)
Q Consensus 682 ----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 747 (1202)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.+..++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2446899999973 5677899999976432111 1112233456788999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCCEEEEEcCCC
Q 000979 827 FLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~~ 842 (1202)
++|++ |++++.|+++
T Consensus 223 ~~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMKQ-GRVVESGLTD 237 (258)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 8999999863
No 233
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-36 Score=332.38 Aligned_cols=222 Identities=20% Similarity=0.258 Sum_probs=178.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|. +..+|+|+||++++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999999884 135899999999999999999999999999999999976532 2469999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... .....+.++.+.++++.+++.+..+.... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 234567999999988888 899999987653221 11222334567888999987542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC-
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 832 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g- 832 (1202)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999852
Q ss_pred ---CEEEEEcCCC
Q 000979 833 ---GQEIYVGPLG 842 (1202)
Q Consensus 833 ---G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999873
No 234
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.4e-36 Score=324.66 Aligned_cols=211 Identities=23% Similarity=0.339 Sum_probs=176.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 6788999887410 123579999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 684 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+++.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 245789999999999999999999998654321 123344456688999999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 5689999999985 664
No 235
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=367.20 Aligned_cols=219 Identities=25% Similarity=0.300 Sum_probs=183.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378899998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHcc----CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 683 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 683 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
... ..++.++||+|++.+++.+||+||+.++.... .....+.++.+++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12356999999999999999999998753211 0000122334456889999999987777664 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57789999999984 89
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
+++.|++++
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999999865
No 236
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.8e-36 Score=378.38 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=177.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. .++.+|+|+|++|++||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 475 ~~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~ 541 (710)
T TIGR03796 475 SGYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGI 541 (710)
T ss_pred CCeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 357999999999962 22458999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++.+ -.|+.+|.
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDAD----LVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHHH----HHHHHHHhCCHHHHHhCcCcccceecc
Confidence 8653 457889999999999885 69999998641 1233332 455566555543 45677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.| ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|++ .++|+|++||+++ ....+||+++|+
T Consensus 612 ~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 56999999999999999999999999999999999999999999975 4899999999985 567799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 686 ~-G~i~~~G~~~ 696 (710)
T TIGR03796 686 R-GKVVQRGTHE 696 (710)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999863
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-36 Score=333.52 Aligned_cols=220 Identities=23% Similarity=0.284 Sum_probs=178.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.+.++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999999884 246899999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 680 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 680 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87542 234667999999998888 899999987643221 12333334456788899998643221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+||+++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 589999999986 57889999999985 899
Q ss_pred EEEcCCC
Q 000979 836 IYVGPLG 842 (1202)
Q Consensus 836 ~~~G~~~ 842 (1202)
+..|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999864
No 238
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.1e-36 Score=322.00 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=172.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++++ ++.+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 488999998763 2358999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345578999999989988999999988654321 11 1234678899999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
|++|||+++.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|++++++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 6889999999986
No 239
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=329.91 Aligned_cols=220 Identities=20% Similarity=0.250 Sum_probs=175.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478899999874 235899999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1346789999999988875 999999987543211 1122233456777888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999984 5899999999986 57788999999984 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999863
No 240
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9.5e-36 Score=330.36 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=175.2
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc--eEEEEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 680 (1202)
.++++|++++|. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 588999998872 24799999999999999999999999999999999986531 16899999998
Q ss_pred cCCcccc-cceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCCC
Q 000979 681 PKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVGLPGVS 754 (1202)
Q Consensus 681 ~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~~~ 754 (1202)
++..... ++.++||+|++. +.+..|+.+++.+.+.... ... .++.++++++.+++.+. .++. ..
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7653222 357999999974 4466899999876543221 111 12457889999999762 3433 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 57788999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+++
T Consensus 218 ~i~~~~~~~ 226 (254)
T PRK10418 218 RIVEQGDVE 226 (254)
T ss_pred EEEEecCHH
Confidence 999999863
No 241
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.3e-36 Score=328.19 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=167.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc--eEEEEEEEcCccCCcccc-cceEEEeecCCC--CCCCCC
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 705 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 705 (1202)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987631 158999999987654322 357899999984 556789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
+.||+.+...... ...+..+++++++++.+++.+ ..+.. ++.|||||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 112233456889999999973 34443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 783 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999998764 899999999986 57789999999985 8999999863
No 242
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=287.05 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=181.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+..+++++.|. ..++|.||+++.+.||.+.++||||||||||++.|.=... +.+|+..+.|...
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 366778887763 3568999999999999999999999999999999975443 4478887776532
Q ss_pred C------c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 683 K------Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+ . ...|+.+|+|+|...++|.+||.|||.-+. ++. .+.++++.+.+..++++.+.|.+.+|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 1 1 346788999999999999999999996542 221 24556677778899999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++.+++++++..|.|-+++||..+ -....+.|++.|.+ |
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~-g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeec-C
Confidence 369999999999999999999999999999999999999999999999999999999999876 35677899999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+.+
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999853
No 243
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.3e-35 Score=370.43 Aligned_cols=213 Identities=28% Similarity=0.446 Sum_probs=178.8
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 356999999999952 23458999999999999999999999999999999999877 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++++ +.++++..++. +-.|+.+|.
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCHHH----HHHHHHHcChHHHHHhCcccccceecC
Confidence 8654 457889999999999887 69999998752 1233332 44555555543 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|+
T Consensus 598 ~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 4699999999999999999999999999999999999999999999875 4899999999985 568899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+.
T Consensus 674 ~-G~i~e~G~~ 683 (694)
T TIGR03375 674 N-GRIVADGPK 683 (694)
T ss_pred C-CEEEeeCCH
Confidence 5 899999985
No 244
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.3e-35 Score=331.37 Aligned_cols=225 Identities=24% Similarity=0.328 Sum_probs=180.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.|+... ..+ ...++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67899999884210 000 0113568999999999999999999999999999999999866 45899999998754
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
. ...++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. +..++. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 4667799999987653211 1122334445688999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ .+.+.+|++++|. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998765 899999999986 5777899999998 58
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998754
No 245
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=333.49 Aligned_cols=217 Identities=20% Similarity=0.266 Sum_probs=175.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~ 678 (1202)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3588999999874 2358999999999999999999999999999999999642 1 1258999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----cccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 987532 1245679999999988874 999999986543211 11222345577888888874 223332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+||+++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 577889999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |+++..|+++
T Consensus 255 ~~-G~i~~~g~~~ 266 (286)
T PRK14275 255 YE-GVLVEHAPTA 266 (286)
T ss_pred EC-CEEEEeCCHH
Confidence 85 8999999863
No 246
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=334.12 Aligned_cols=219 Identities=22% Similarity=0.394 Sum_probs=175.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 488999999884 12458999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeecCCCCC--CCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 683 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.....++.++|++|++.+. ...+++|++.++...... ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997653 234788888654210000 00111223345678899999987777654 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |+++..|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577899999766 4 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8754
No 247
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.7e-36 Score=371.62 Aligned_cols=213 Identities=28% Similarity=0.433 Sum_probs=179.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 336 ~~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~ 402 (574)
T PRK11160 336 QVSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQ 402 (574)
T ss_pred CCeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 357999999999852 12358999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------RQSLVGLP 751 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~ 751 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.++ +.+.++++.+++.+. .|+.+|..
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 8654 456788999999998886 69999998752 12222 236777788777643 45666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 473 g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~ 548 (574)
T PRK11160 473 G-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN 548 (574)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC
Confidence 3 5699999999999999999999999999999999999999999999875 5899999999986 3567999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|+++..|+.
T Consensus 549 -G~i~~~g~~ 557 (574)
T PRK11160 549 -GQIIEQGTH 557 (574)
T ss_pred -CeEEEeCCH
Confidence 899999985
No 248
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=328.37 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=175.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--c-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 679 (1202)
.++++|++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999999884 23589999999999999999999999999999999997641 1 3589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999998886 799999987643221 1112223345778888888842 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4789999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
No 249
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=328.62 Aligned_cols=219 Identities=24% Similarity=0.257 Sum_probs=175.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999999874 235899999999999999999999999999999999974321 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+.++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2345679999999988874 999999987543321 1222334557788888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 57788999999985 89
Q ss_pred EEEEcCC
Q 000979 835 EIYVGPL 841 (1202)
Q Consensus 835 ~~~~G~~ 841 (1202)
++..|++
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9999886
No 250
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-35 Score=362.65 Aligned_cols=220 Identities=22% Similarity=0.337 Sum_probs=182.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+||||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 57889998873 24589999999999999999999999999999999998654235899999998764
Q ss_pred ccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000979 684 QET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 757 (1202)
Q Consensus 684 ~~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LS 757 (1202)
... .++.++||+|++.+++.+||+||+.+........ ....++.+++++++++.+++.+.. ++. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2456899999999999999999998864332111 122333445688999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999878999999999986 57788999999985 79999
Q ss_pred EcCCCc
Q 000979 838 VGPLGR 843 (1202)
Q Consensus 838 ~G~~~~ 843 (1202)
.|++++
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 998764
No 251
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.4e-35 Score=322.21 Aligned_cols=192 Identities=27% Similarity=0.352 Sum_probs=160.0
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999876 458999999976421 1112344567999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+||+.+...... ....+.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988754321 223334456788899999987777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 787 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57788999999984 8888765
No 252
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=330.24 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=175.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999999884 2358999999999999999999999999999999999642 1 14589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1345679999999988874 99999987643221 1112223345677888888742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.|||+++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |++++.|+++
T Consensus 238 ~-G~i~~~~~~~ 248 (268)
T PRK14248 238 N-GDLVEYDQTE 248 (268)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 253
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=330.85 Aligned_cols=217 Identities=19% Similarity=0.231 Sum_probs=175.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEE
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 677 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 677 (1202)
+..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34688999999873 235899999999999999999999999999999999975321 24799999
Q ss_pred cCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 000979 678 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 748 (1202)
Q Consensus 678 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 748 (1202)
+|.++.. ..+++.++|++|++.+++. ||.||+.+....+. ... ..++.+++.++.+++.. ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987532 2345679999999888874 99999988653321 111 12234567778777642 22322
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 749 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 749 ~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999864 789999999986 57889999999
Q ss_pred Ee--------cCCEEEEEcCCC
Q 000979 829 MK--------RGGQEIYVGPLG 842 (1202)
Q Consensus 829 l~--------~gG~~~~~G~~~ 842 (1202)
|+ +.|+++..|+++
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EecccccccccCceEEEeCCHH
Confidence 97 258999999974
No 254
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.1e-36 Score=324.65 Aligned_cols=210 Identities=22% Similarity=0.353 Sum_probs=171.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 488999998873 2358999999999999999999999999999999999865 4589999999865
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988887 5999999876443211 11 123467899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 57999999965454555
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
.|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
No 255
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-35 Score=362.52 Aligned_cols=212 Identities=21% Similarity=0.306 Sum_probs=181.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999999884 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
... . .++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 234689999999999999999999875311 1223456789999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57789999999985 899999
Q ss_pred cCCCc
Q 000979 839 GPLGR 843 (1202)
Q Consensus 839 G~~~~ 843 (1202)
|++++
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
No 256
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-35 Score=318.82 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788888773 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|+.||+.+...... . ..+++++++++.+|+.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999999999999999988754321 1 1234578899999998766665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
||++|||||+++|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 354444555544
No 257
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=330.16 Aligned_cols=214 Identities=22% Similarity=0.280 Sum_probs=175.0
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3588999999873 24589999999999999999999999999999999998542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 749 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 749 (1202)
|.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ..+++++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987532 2346689999999888875 99999988654331 112 23445788999998853 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE-E
Q 000979 750 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-L 828 (1202)
Q Consensus 750 ~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~-~ 828 (1202)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+||++ +
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~ 252 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVF 252 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 357999999999999999999999999999999999999999999999976 489999999986 5778899976 4
Q ss_pred EecCCEEEEEcCC
Q 000979 829 MKRGGQEIYVGPL 841 (1202)
Q Consensus 829 l~~gG~~~~~G~~ 841 (1202)
|. +|+++..|++
T Consensus 253 l~-~G~i~~~g~~ 264 (285)
T PRK14254 253 LT-GGELVEFDDT 264 (285)
T ss_pred ee-CCEEEEeCCH
Confidence 56 5899999885
No 258
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=326.99 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=173.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--Cc-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999999874 2458999999999999999999999999999999999743 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87631 234567999999998888 7999999886543211 112222344567777777642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 4 899999886
No 259
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.6e-36 Score=318.17 Aligned_cols=196 Identities=27% Similarity=0.338 Sum_probs=166.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35788888773 2358999999999999999999999999999999999876 45899999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++. ++.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHH
Confidence 2 23456799999999888899999999875311 1 123468899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|++||++. ++.+.+|+++.+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998777999999999986 577889998876
No 260
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.8e-36 Score=331.75 Aligned_cols=210 Identities=25% Similarity=0.399 Sum_probs=164.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehH
Confidence 357888888741 12458999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++.+++ .||+||+.+... ........ ...++.++.+ ++....+. .+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234567999999987765 699999976421 11111100 0112333333 33322222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.||++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 4899999999986 34 57999999985 8
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++++.|++
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999986
No 261
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=327.68 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=177.7
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 678 (1202)
..+..+++++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 3467777777662 356899999999999999999999999999999999976531 258999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . ..+.+..++++++.+++.+..+.... ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 23456799999998877 5999999998764331 1 12234567889999998543222211 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe---
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 830 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~--- 830 (1202)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|++++ +++|+|++||+++ ++.+.+||+++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 5788999999996
Q ss_pred ----cCCEEEEEcCCC
Q 000979 831 ----RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ----~gG~~~~~G~~~ 842 (1202)
++|+++..|+.+
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 368999999863
No 262
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.1e-35 Score=325.64 Aligned_cols=221 Identities=24% Similarity=0.294 Sum_probs=176.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+||||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999998873 2358999999999999999999999999999999999731125689999999876
Q ss_pred Ccc---cccc-eEEEeecCCCCCCCCCHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000979 683 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 753 (1202)
Q Consensus 683 ~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 753 (1202)
... ..++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999999875432110 1111222345678889999986 34444321
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 832 (1202)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|+ +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 249999999999999999999999999999999999999999999999877999999999986 34455 89999998 5
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 8999999874
No 263
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=342.83 Aligned_cols=224 Identities=22% Similarity=0.293 Sum_probs=187.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc--eEEEEEEEcCc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGY 680 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 680 (1202)
-++++|++..|... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 47899999888642 23357999999999999999999999999999999999976543 35799999998
Q ss_pred cCCc-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 681 PKKQ-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++.. ....+.++|++|++ .+.|.+||.+.+.-...++.. .+.++.++++.++++.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6432 11346799999997 456778999888766555432 2366777888999999999887655 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.+++||+++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 3578999999999999999999999999999999999999999999999975 4999999999997 4789999999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+++
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999974
No 264
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=370.93 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=179.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+..++++||+|+|+. +++.+|+|+|+++++||.+||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 405 (582)
T PRK11176 339 KGDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGH 405 (582)
T ss_pred CCeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCE
Confidence 346999999999852 22458999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 750 (1202)
+.++ ..+++.++||+|++.+++ .|++||+.++. +...++++ ++++++.+++ .+-.|+.+|.
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCC
Confidence 8654 456788999999999886 79999998742 11233332 4555555553 3445777876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ +.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|+
T Consensus 477 ~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE 552 (582)
T ss_pred CC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 54 5699999999999999999999999999999999999999999999874 5799999999985 578899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 553 ~-g~i~e~g~~~ 563 (582)
T PRK11176 553 D-GEIVERGTHA 563 (582)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 265
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-35 Score=374.16 Aligned_cols=214 Identities=28% Similarity=0.423 Sum_probs=177.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. +++.+|+|+|+++++||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 457999999999952 22458999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+|+.++||+|++.+++ .|++||+.++. ++.+.++ +.++++..++. +-.|+.++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCHHH----HHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8654 456788999999988886 69999998642 1233322 34445554443 335677766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999874 6899999999985 456799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999863
No 266
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=329.27 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--c-eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 679 (1202)
.++++||+++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999999873 23589999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. .+.++.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 87531 234567999999988887 599999988654321 11 1223446677777777431111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec---
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 831 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~--- 831 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.|||+++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999865 589999999986 68899999999972
Q ss_pred -----CCEEEEEcCC
Q 000979 832 -----GGQEIYVGPL 841 (1202)
Q Consensus 832 -----gG~~~~~G~~ 841 (1202)
.|+++..|++
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999986
No 267
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.8e-36 Score=371.83 Aligned_cols=212 Identities=22% Similarity=0.347 Sum_probs=179.1
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|++|+|+. ++.+|+|+|+++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 338 ~~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~ 403 (592)
T PRK10790 338 SGRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGR 403 (592)
T ss_pred CCeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCE
Confidence 356999999999951 1348999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 750 (1202)
++++ ..+++.++||+|++.+++. |++||+.++. ..+++ .++++++.+|+.+ -.|+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccC
Confidence 8653 4578899999999999884 9999998852 12222 3566777776543 34666766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ....+|++++|+
T Consensus 473 ~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE
Confidence 44 46999999999999999999999999999999999999999999998754 699999999984 577899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+|+++..|+.+
T Consensus 549 -~G~i~~~G~~~ 559 (592)
T PRK10790 549 -RGQAVEQGTHQ 559 (592)
T ss_pred -CCEEEEEcCHH
Confidence 58999999864
No 268
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=329.38 Aligned_cols=215 Identities=21% Similarity=0.216 Sum_probs=173.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 679 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999999884 1348999999999999999999999999999999999754 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 750 (1202)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999998887 599999998654321 111222234456777776543 222322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|++
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899999986
No 269
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=359.77 Aligned_cols=217 Identities=27% Similarity=0.329 Sum_probs=181.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478899998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ..+++.++|++|++.+++.+||+||+.++............+.+++++++++.+++.+..++. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 123567999999999999999999998853211111122334455688999999998666654 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 798877
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 764
No 270
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-37 Score=335.19 Aligned_cols=220 Identities=25% Similarity=0.373 Sum_probs=183.2
Q ss_pred cCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE
Q 000979 597 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 676 (1202)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~ 676 (1202)
.....+.++|+||+|.|+ .++++|+||||++.||+.+||+||||+||||++++|....+ ..+|.|.
T Consensus 531 l~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~ 596 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSIT 596 (790)
T ss_pred ccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEE
Confidence 344678899999999996 35678999999999999999999999999999999976543 5689999
Q ss_pred EcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH--HHH-HHHcCCCccccccccC
Q 000979 677 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI--DEV-MELVELNPLRQSLVGL 750 (1202)
Q Consensus 677 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~-l~~l~l~~~~~~~~~~ 750 (1202)
+||++++. ...|+.+|.||||..+|. -|+..|++|+. +..++++..+.. ..+ -+.++..+..++.+|.
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 99998754 567899999999988875 68888888862 223333322211 111 2346788888999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.|.+ |||||||||+|||+++++|.+++|||+||+||..+++.++..|.++++ ++|.|++.|.+|. .-.+|.+++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEe
Confidence 8775 999999999999999999999999999999999999999999999874 8999999999873 45689999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|.-
T Consensus 747 ~-G~IvErG~H 756 (790)
T KOG0056|consen 747 N-GRIVERGRH 756 (790)
T ss_pred C-CeEeecCcH
Confidence 5 899999974
No 271
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=359.50 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=174.1
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc----ccccceEEEeecCCCCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 704 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~l 704 (1202)
+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 468999999999999999999999999999999999876 458999999987642 12346789999999888999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
||+||+.+..........+.++.+++++++++.+++.+..++.+ ..|||||||||+|||||+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111101123333456889999999987766653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++.+
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999986 57789999999985 89999998765
No 272
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=324.74 Aligned_cols=217 Identities=22% Similarity=0.301 Sum_probs=175.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--ce--EEEEEEEc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 678 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~--~~--~~G~i~~~ 678 (1202)
.+.++|+++++. ++.+|+|+||++++||+++|+||||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378899998873 34689999999999999999999999999999999997652 21 23666666
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000979 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLP 751 (1202)
Q Consensus 679 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 751 (1202)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665422 2346679999999999999999999998753221 1123334456788999999863 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 699999999986 56789999999984
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 228 -g~i~~~g~~~ 237 (257)
T PRK14246 228 -GELVEWGSSN 237 (257)
T ss_pred -CEEEEECCHH
Confidence 8999999863
No 273
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.5e-35 Score=326.18 Aligned_cols=215 Identities=26% Similarity=0.283 Sum_probs=173.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 681 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378899999874 1357999999999999999999999999999999999876 458999999876
Q ss_pred ----CCc---c----cccceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000979 682 ----KKQ---E----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 747 (1202)
Q Consensus 682 ----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 747 (1202)
+.. . ..++.++|++|++. +.+.+|+.||+.+..... . .....+.++.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999974 445679999987543211 1 0111223456788999999963 45544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 577789999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
++|++ |+++..|++
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 899999885
No 274
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-35 Score=322.46 Aligned_cols=220 Identities=20% Similarity=0.259 Sum_probs=178.3
Q ss_pred ceeEEeeeEEEEecCch----hhh---cccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEE
Q 000979 602 HSLTFDEVVYSVDMPEE----MKV---QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGN 674 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~ 674 (1202)
+.+.++||+..|..... .+. ......++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 56888999887765321 111 0112255789999999999999999999999999999999999876 45899
Q ss_pred EEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 675 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 675 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
|.++|. +++++|+..+.+.+|+.||+.+..... ....++....++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999884 346677777778899999998764432 123344445567888888888766654 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|+|++||++. ++.+.+|++++|+ +|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999998777999999999986 5778899999998 489
Q ss_pred EEEEcCCCc
Q 000979 835 EIYVGPLGR 843 (1202)
Q Consensus 835 ~~~~G~~~~ 843 (1202)
++..|++++
T Consensus 221 i~~~g~~~~ 229 (264)
T PRK13546 221 LKDYGELDD 229 (264)
T ss_pred EEEeCCHHH
Confidence 999998643
No 275
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=335.47 Aligned_cols=226 Identities=28% Similarity=0.431 Sum_probs=189.8
Q ss_pred CCCCccCCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE
Q 000979 592 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 671 (1202)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~ 671 (1202)
...+..|.+...+..+++++.- | ..++++|+|+||++.+||.+||+||||||||||.|+|.|.-. +.
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~P---P--------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~ 389 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAAP---P--------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PT 389 (580)
T ss_pred cCCCCCCCCCceeeEeeeeecC---C--------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cC
Confidence 3456778888899999999832 2 345689999999999999999999999999999999999765 56
Q ss_pred EEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHH-----HHHHHHHHHHHcCCCcc
Q 000979 672 TGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET-----RKMFIDEVMELVELNPL 743 (1202)
Q Consensus 672 ~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~~~ 743 (1202)
+|.|.+||.+.++ +.+-+++||.||+-.+|+ -||.||+.= ..++.+.+. +.+.+.|++ +.+.+-
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~G 461 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQG 461 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCC
Confidence 8999999998764 456789999999988887 799999952 222333221 222334443 456778
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 744 ~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
.||.+|..| ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|.|+ +...+
T Consensus 462 YdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~ 538 (580)
T COG4618 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASV 538 (580)
T ss_pred ccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhc
Confidence 899999765 579999999999999999999999999999999999999999999999999999999999986 78899
Q ss_pred ceEEEEecCCEEEEEcCCC
Q 000979 824 DELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~ 842 (1202)
|++++|+ +|++-.+|+.+
T Consensus 539 Dkilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 539 DKILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred ceeeeec-CChHHhcCCHH
Confidence 9999998 58999999974
No 276
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-35 Score=307.05 Aligned_cols=170 Identities=27% Similarity=0.420 Sum_probs=150.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcc
Confidence 35788888773 1358999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++.+|+.||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 3 234567999999999888899999863 899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|++ |+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999999999999999999999999999999999877899999999986 57778999999985 54
No 277
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-36 Score=328.82 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhh
Confidence 357888888741 11358999999999999999999999999999999999876 45899999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++.+++ .||+||+.+.... ....+.. ..+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988876 6999999875321 1111111 1234444444 444433332 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-C
Confidence 5799999999999999999999999999999999999999999999986 4899999999986 45 45999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|++
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 99988875
No 278
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=324.55 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=176.3
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-ceEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 679 (1202)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367899998873 2458999999999999999999999999999999999643 1 12589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000979 680 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 754 (1202)
Q Consensus 680 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 754 (1202)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..+++++++++.+++.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 1345679999999988874 99999987643221 11223334567888898887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 799999999999999999999999999999999999999999999985 4899999999986 68888999999985 89
Q ss_pred EEEEcCCC
Q 000979 835 EIYVGPLG 842 (1202)
Q Consensus 835 ~~~~G~~~ 842 (1202)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999863
No 279
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.4e-35 Score=322.57 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=168.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEh
Confidence 3678899988731 12358999999999999999999999999999999999865 4579999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGV 753 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~ 753 (1202)
.. ...++.++|++|++.+++ .|+.||+.+... ... ++.++++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 224567999999998876 699999976421 111 1235677888888765554321 0123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ . .+.+|++++|.+ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998654 89999999986 3 479999999985 7
Q ss_pred EEEEEc
Q 000979 834 QEIYVG 839 (1202)
Q Consensus 834 ~~~~~G 839 (1202)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
No 280
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=298.79 Aligned_cols=217 Identities=25% Similarity=0.381 Sum_probs=186.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.+||+++| +++.+|+|+|+++++|.+++++|||||||||||.+++.+.. ..+|+|.++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecc
Confidence 4566777665 45789999999999999999999999999999999998766 45899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ....+.++..-|+......+||+|-+.|+.......... ++.+..+++.++.++|.+..|+.. .+|||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhH-----Hhcccch
Confidence 4 345667788899988888999999999974332222233 345667999999999999999874 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||.-||+.|+.+.+.++||||.++||-.....+++.|++++++ |+||+++.||.+ ..-.+.|+++-|++ |+++..|
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~-G~vv~~G 218 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKN-GKVVKQG 218 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecC-CEEEecC
Confidence 99999999999999999999999999999999999999999876 999999999997 46678899999985 8999999
Q ss_pred CCCc
Q 000979 840 PLGR 843 (1202)
Q Consensus 840 ~~~~ 843 (1202)
++++
T Consensus 219 ~~~e 222 (252)
T COG4604 219 SPDE 222 (252)
T ss_pred CHHH
Confidence 9975
No 281
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-35 Score=315.45 Aligned_cols=197 Identities=28% Similarity=0.376 Sum_probs=165.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67899998873 2458999999999999999999999999999999999876 45899999998753
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
....++.++|++|++.+++.+|++||+.+...... .. ++.++++++.+|+.+..+.. .+.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22256678999999888889999999987653321 11 12368899999998765554 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998777999999999986 3443 8887774
No 282
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-35 Score=337.48 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=189.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.++|++.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 477899998874 4579999999999999999999999999999999999877 5689999999976
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
.. ......|+.|.|+..+.|++||.||+.++...+. ..-.+....+++..++++.+++....++.+ ..||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 43 2234578999999999999999999987765443 223455666677889999999864456665 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
+||||-|+|||||..+++||+||||||.|+......+.+.+++++++|.+||++||.++ ++++.|||+.+|.+ |+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999985 89999
Q ss_pred EcCC-Cc
Q 000979 838 VGPL-GR 843 (1202)
Q Consensus 838 ~G~~-~~ 843 (1202)
.++. .+
T Consensus 226 ~~~~~~~ 232 (500)
T COG1129 226 TRPTAAE 232 (500)
T ss_pred ecccccC
Confidence 9983 44
No 283
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8.3e-35 Score=322.53 Aligned_cols=220 Identities=25% Similarity=0.288 Sum_probs=172.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 57889998874 23589999999999999999999999999999999998421146899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHH-ccC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAW-LRL--S-PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 754 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 754 (1202)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . ......+.++.+++.++.+++. +..++.+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 31 1 23468999999988888887777654321 110 0 0011222345677888988985 3444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-cceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gG 833 (1202)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|+ +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999877899999999976 34454 89999997 58
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
++++.|+.+
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999863
No 284
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.1e-35 Score=311.78 Aligned_cols=179 Identities=26% Similarity=0.332 Sum_probs=150.3
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-----ccccceEEEeecCCC-CC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 701 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 701 (1202)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3468999999999999999999999999999999999876 458999999987531 124567899999973 23
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
...||+||+.+..... ..+.++.+++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999999865422 1233334456789999999987766653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~ 816 (1202)
||+|||+.+++.+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
No 285
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2e-35 Score=328.06 Aligned_cols=212 Identities=19% Similarity=0.283 Sum_probs=172.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+. +...+|+|+||+|++||+++|+||||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999999852 12348999999999999999999999999999999999875 269999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PGV 753 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~ 753 (1202)
.. ...++.++|++|++.+++ .|++||+.... .... +.+.+.++.+|+.+..+...+. .+.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999999987 59999996321 1122 2356777888887654443221 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ .+ ..|||+++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 4599999999999999999999999999999999999999999999874 5899999999985 34 45999999985 8
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
+++++|++++
T Consensus 213 ~i~~~g~~~~ 222 (275)
T cd03289 213 KVRQYDSIQK 222 (275)
T ss_pred eEeecCCHHH
Confidence 9999999853
No 286
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.2e-35 Score=322.82 Aligned_cols=198 Identities=25% Similarity=0.371 Sum_probs=168.3
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
+|+|+||++++||+++|+||||||||||+++|+|..+ + +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999864 2 7999999987643 22345689999998888889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 780 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~illlD 780 (1202)
||+.+.... ....++.+++++++++.+++.+..++. ++.||||||||++|||||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678999999998766665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 781 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 781 EPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 57889999999985 8999999864
No 287
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.7e-35 Score=312.40 Aligned_cols=195 Identities=24% Similarity=0.288 Sum_probs=161.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcc
Confidence 35678888763 2468999999999999999999999999999999999876 45899999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ +.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2245678999999888888999999987653321 1 1 234678899999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 828 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 828 (1202)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++.. -.+++++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999999999987779999999999752 23466553
No 288
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.3e-35 Score=326.78 Aligned_cols=211 Identities=27% Similarity=0.382 Sum_probs=162.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. .+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehh
Confidence 357888887741 012458999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~ 753 (1202)
. ...++.++|++|++.+++ .||+||+.+.... ...++... .+.+.++.+ ++....+. ..
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeecc-----CC
Confidence 2 223467999999988776 6999999874321 11111100 112222222 22222222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.||++++|++ |
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G 213 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-G 213 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 7899999999986 34 48999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
++++.|+.
T Consensus 214 ~i~~~~~~ 221 (238)
T cd03249 214 QVVEQGTH 221 (238)
T ss_pred EEEEeCCH
Confidence 99999875
No 289
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-35 Score=324.94 Aligned_cols=210 Identities=25% Similarity=0.390 Sum_probs=165.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++++. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4788999988741 1348999999999999999999999999999999999876 4589999999865
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~ 752 (1202)
.. ...++.++|++|++.+++. |++||+.+... .... ..+++.++.+++.+..+.. .+ ..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-EN 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhh-cC
Confidence 32 2346679999999888775 99999986521 1111 1233344444443322211 11 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|++++|++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD- 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999985 5899999999986 34 56999999985
Q ss_pred CEEEEEcCC
Q 000979 833 GQEIYVGPL 841 (1202)
Q Consensus 833 G~~~~~G~~ 841 (1202)
|++++.|+.
T Consensus 213 g~~~~~~~~ 221 (229)
T cd03254 213 GKIIEEGTH 221 (229)
T ss_pred CeEEEeCCH
Confidence 899988874
No 290
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=323.22 Aligned_cols=217 Identities=21% Similarity=0.223 Sum_probs=175.3
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEE
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 677 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~ 677 (1202)
+..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34589999999884 235899999999999999999999999999999999976531 26899999
Q ss_pred cCccCC-------cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc----cccc
Q 000979 678 SGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQS 746 (1202)
Q Consensus 678 ~g~~~~-------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 746 (1202)
+|.+.. ...+++.++|++|++.+++. |++||+.+....... ......++.++++++.+++.+ ..+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987642 12345679999999988885 999999876532211 111222345677788887642 2222
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 747 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 747 ~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
. ...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 2 357999999999999999999999999999999999999999999999865 689999999986 577899999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
++|++ |+++..|+.
T Consensus 231 ~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 231 AYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99984 899999986
No 291
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.9e-35 Score=357.07 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=176.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC----
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---- 679 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g---- 679 (1202)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 35788988873 2468999999999999999999999999999999999752114579999872
Q ss_pred -------------------ccCC----------c---ccccceEEEeecC-CCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 000979 680 -------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSET 726 (1202)
Q Consensus 680 -------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~ 726 (1202)
.++. . ...++.++|++|+ +.+++.+||+||+.+..... ....++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 1110 0 1234578999997 67888899999999865432 123344
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 000979 727 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 805 (1202)
Q Consensus 727 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g 805 (1202)
.+++++++++.+|+.+..++. ++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 456788999999998776665 357999999999999999999999999999999999999999999999965 48
Q ss_pred CEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 806 RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 806 ~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
+|||++||+++ .+.+.||++++|++ |++++.|+++
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 99999999986 46788999999985 7999988864
No 292
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.7e-35 Score=316.65 Aligned_cols=210 Identities=22% Similarity=0.262 Sum_probs=167.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC--c-
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--Y- 680 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~- 680 (1202)
++++|+++.|+.... .+.++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 578899988852100 0012469999999999999999999999999999999999876 4579999984 2
Q ss_pred -cCCc---cc----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000979 681 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 751 (1202)
Q Consensus 681 -~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 751 (1202)
+... .. .++.++|++|++.+++.+||+||+.+..... ....++.++.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 2346899999999999999999998764322 12223334567889999999753 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3579999999999999999999999999999999999999999999999777999999999964 4567899998763
No 293
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-35 Score=306.64 Aligned_cols=170 Identities=29% Similarity=0.418 Sum_probs=150.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788888773 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 684 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 684 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23457899999999888889999987541 899
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 9999999999999999999999999999999999999999999877 899999999986 56678999999985
No 294
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=327.51 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=175.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---ceEEEEEEEc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 678 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 678 (1202)
..+.++|+++.|+ ++.+|+++||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999999874 24589999999999999999999999999999999997542 2458999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCC---------CCC-HHHHHHHHHHHHHHcCCCcc
Q 000979 679 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP---------EVD-SETRKMFIDEVMELVELNPL 743 (1202)
Q Consensus 679 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~ 743 (1202)
|.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 987542 134567999999988887 59999999865321100 011 12234567888898887532
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc
Q 000979 744 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 744 ~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 823 (1202)
.+.... ..++.||||||||++|||||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+
T Consensus 190 ~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~ 266 (305)
T PRK14264 190 VNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARIS 266 (305)
T ss_pred hhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhc
Confidence 211111 12467999999999999999999999999999999999999999999999876 589999999986 577889
Q ss_pred ceEE-EEecCCEEEEEcCCC
Q 000979 824 DELF-LMKRGGQEIYVGPLG 842 (1202)
Q Consensus 824 d~v~-~l~~gG~~~~~G~~~ 842 (1202)
|+++ +|+ +|+++..|+++
T Consensus 267 d~i~~~l~-~G~i~~~g~~~ 285 (305)
T PRK14264 267 DQTAVFLT-GGELVEYDDTD 285 (305)
T ss_pred CEEEEEec-CCEEEEeCCHH
Confidence 9975 566 58999999863
No 295
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=309.56 Aligned_cols=191 Identities=24% Similarity=0.391 Sum_probs=167.8
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000979 634 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 634 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
++++..+.-.++||-|+||||||||+|+|+|... +..|.|.+||....+ ...+|.+|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777757999999999999999999999877 458999999975321 2356889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 786 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgL 786 (1202)
+.||.|+.+.. .....+++.+.+|+.|..++.. ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 2234689999999999999873 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 787 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 787 D~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|-..+.+++-.|.+++++ +..|+.+||.+. |+..++|++++|.+ |++..+|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 999999999999999876 889999999986 79999999999985 8999999964
No 296
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-35 Score=362.01 Aligned_cols=216 Identities=26% Similarity=0.385 Sum_probs=174.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++|+|+. +++++|+|+|++++|||.++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEe
Confidence 46999999999852 22458999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
+.. ..+++.++||+|++.+++. |++||+.+.. +..++++.. ...++.++.+ .+-.|+.+|.. .
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g 452 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-G 452 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-c
Confidence 643 3467889999999998875 9999998532 122332211 1122333332 22345666654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
..||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++..+|+|+|+++|+++ ..+.+|++++|++ |
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~-G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD-G 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 569999999999999999999999999999999999999999999998666899999999985 4678999999985 8
Q ss_pred EEEEEcCCC
Q 000979 834 QEIYVGPLG 842 (1202)
Q Consensus 834 ~~~~~G~~~ 842 (1202)
+++..|+.+
T Consensus 530 ~i~~~g~~~ 538 (544)
T TIGR01842 530 RIARFGERD 538 (544)
T ss_pred EEEeeCCHH
Confidence 999999853
No 297
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-35 Score=361.64 Aligned_cols=220 Identities=19% Similarity=0.254 Sum_probs=180.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|... .++.++|+||||++++||++||+||||||||||+++|+|... +.+|.|.++|...
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 48899999988421 123569999999999999999999999999999999999876 3478888887532
Q ss_pred C-------------cc---cc-cceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 000979 683 K-------------QE---TF-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP- 742 (1202)
Q Consensus 683 ~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 742 (1202)
. .. .. ++.+|||+|++ .+++.+||+||+.+...... ..+..+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 12 24689999997 67888999999998765321 2234444567889999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHH
Q 000979 743 --LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDI 819 (1202)
Q Consensus 743 --~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~ 819 (1202)
..+.. +.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23443 4579999999999999999999999999999999999999999999999765 899999999986 57
Q ss_pred HHhcceEEEEecCCEEEEEcCCC
Q 000979 820 FEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 820 ~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
.++|||+++|++ |+++..|++.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCHH
Confidence 789999999985 8999988864
No 298
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.1e-33 Score=367.32 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=107.8
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000979 700 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 775 (1202)
Q Consensus 700 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~---~~p~ 775 (1202)
.+...||.|+|.+...-...-....++.++++ ++++.+|+.+. .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45567999999876541111111223334455 47888999765 4554 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
+|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 3689999999853
No 299
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.4e-35 Score=320.66 Aligned_cols=199 Identities=24% Similarity=0.325 Sum_probs=167.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 478899998874 2358999999999999999999999999999999999876 45899999862
Q ss_pred CcccccceEEEeecCCCCCCC--CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 683 KQETFARISGYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..++. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877765 3788876532 1111 23367889999998777665 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 5778999999995 4 688999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
No 300
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.9e-34 Score=358.91 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=178.2
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. .++.+|+|+|+++++||.++|+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 328 ~~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~ 394 (571)
T TIGR02203 328 RGDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGH 394 (571)
T ss_pred CCeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCE
Confidence 346999999999852 12358999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
++++ ..+++.++||+|++.+++ .|++||+.++. +++.+++ +++++++.+++. +-.|+.+|.
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred eHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecC
Confidence 7643 456788999999998875 69999998752 1123332 356666666654 335667776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ +.||||||||++||||++++|+|++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.||++++|+
T Consensus 466 ~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~ 541 (571)
T TIGR02203 466 NG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMD 541 (571)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEe
Confidence 54 5699999999999999999999999999999999999999999999874 5799999999984 678899999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 542 ~-g~i~~~g~~~ 552 (571)
T TIGR02203 542 D-GRIVERGTHN 552 (571)
T ss_pred C-CEEEeeCCHH
Confidence 5 8999988853
No 301
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.1e-35 Score=386.65 Aligned_cols=215 Identities=22% Similarity=0.351 Sum_probs=170.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc-Cc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GY 680 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~ 680 (1202)
..++++||+|+|+.+ .++++|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 381 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~ 448 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSH 448 (1466)
T ss_pred CcEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCc
Confidence 379999999999632 12458999999999999999999999999999999999876 568999995 56
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHc-cC--------CC------C---------------------
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL--------SP------E--------------------- 721 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~--------~~------~--------------------- 721 (1202)
++.. ..+|+.+|||+|++.+++ .|++||+.++... +. .. +
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 6533 346788999999999987 5999999986310 00 00 0
Q ss_pred ---C---------CHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 722 ---V---------DSETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 722 ---~---------~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
. .....++.+.++++.+++.+ ..|+.+|.. ...||||||||++|||||+++|+||+||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0 00011234666767666543 346666665 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 783 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
||+||+.++..+++.|+++++ +|+|+|+++|+++ ..+.+|++++|++|
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999999999999999999875 5899999999986 34789999999863
No 302
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-34 Score=310.14 Aligned_cols=194 Identities=23% Similarity=0.302 Sum_probs=163.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 57889998873 2458999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ..+++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 234677999999988888999999998864211 11 134788999999977666543 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEE
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 827 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 827 (1202)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 346676544
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=334.95 Aligned_cols=209 Identities=20% Similarity=0.277 Sum_probs=170.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.+.. ...+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 3667777766531 112468999999999999999999999999999999999876 4589999999641
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
++.+...+.+.+|++||+.+..... ..+.++.++.++++++.+++.+..++.+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1223345567789999998754322 1233344456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998777999999999986 57788999999985 8999999875
Q ss_pred c
Q 000979 843 R 843 (1202)
Q Consensus 843 ~ 843 (1202)
+
T Consensus 229 e 229 (549)
T PRK13545 229 E 229 (549)
T ss_pred H
Confidence 3
No 304
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.1e-35 Score=305.88 Aligned_cols=170 Identities=24% Similarity=0.417 Sum_probs=149.5
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.| +|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (182)
T cd03215 5 LEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVT 65 (182)
T ss_pred EEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 6778887654 5999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000979 684 QE----TFARISGYCEQND---IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 756 (1202)
.. ..++.++|++|++ .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 32 2456799999984 57888999999976420 8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999999999999999999999999999998777899999999986 67888999999985 55
No 305
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.8e-35 Score=317.85 Aligned_cols=209 Identities=23% Similarity=0.325 Sum_probs=167.0
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++++. +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 4788999998741 12358999999999999999999999999999999999866 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000979 683 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPG 752 (1202)
Q Consensus 683 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 752 (1202)
.. ..+++.++|++|++.+++ .|++||+.+.. .... +.+.+.++.+++.+..+. ... ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 235678999999988776 69999986431 1111 224556666666543321 111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++ ..+|++++|++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK- 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999854 689999999986 34 45999999985
Q ss_pred CEEEEEcC
Q 000979 833 GQEIYVGP 840 (1202)
Q Consensus 833 G~~~~~G~ 840 (1202)
|+++..|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89998876
No 306
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=334.76 Aligned_cols=199 Identities=25% Similarity=0.330 Sum_probs=158.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+.-++++|+++.|+ +++.+++++||.+++|+.+||+||||+|||||||+|+|... +.+|.|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc
Confidence 34689999999884 23679999999999999999999999999999999999765 33788876321
Q ss_pred cCCcccccceEEEeecCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCH
Q 000979 681 PKKQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLST 758 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LSg 758 (1202)
-.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++..-. .+. ++.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCH
Confidence 2479999986 4457779999886431 1111 34477889999987532 233 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||.|+.+|+.++.+|.+|+|||||+.||..+...+-+.|.+. .-|||+|+||.. -+-..+++++.+.+ +-..|.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999999875 349999999975 57788999999975 333344
Q ss_pred cC
Q 000979 839 GP 840 (1202)
Q Consensus 839 G~ 840 (1202)
|.
T Consensus 518 g~ 519 (530)
T COG0488 518 GG 519 (530)
T ss_pred CC
Confidence 55
No 307
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.1e-34 Score=307.35 Aligned_cols=184 Identities=25% Similarity=0.299 Sum_probs=154.7
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 35788888773 23589999999999999999999999999999999998421256899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. . .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 31 1 2345999999988888888877650 00 1359999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-hcceEEEEecCCEEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~gG~~~~~ 838 (1202)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+.+ .+|++++|++ |+++..
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~ 186 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKS 186 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999777899999999986 4555 7999999985 899999
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|+.
T Consensus 187 ~~~ 189 (200)
T cd03217 187 GDK 189 (200)
T ss_pred ccH
Confidence 853
No 308
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-35 Score=321.91 Aligned_cols=209 Identities=25% Similarity=0.394 Sum_probs=163.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhh
Confidence 35788888773 12348999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGV 753 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~ 753 (1202)
. ..+++.++|++|++.+++ .|++||+.+... ...... +.+.++..++.+.. ++.... ..
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGE-RG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhc-CC
Confidence 2 234567999999988875 699999987531 111111 22233333332211 111111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+ ..+|++++|++ |
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g 211 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-G 211 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 999999999986 34 45999999985 7
Q ss_pred EEEEEcCC
Q 000979 834 QEIYVGPL 841 (1202)
Q Consensus 834 ~~~~~G~~ 841 (1202)
+++..|+.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99988875
No 309
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.2e-34 Score=353.02 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=180.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
.++++|++++|+.. .+.+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37899999988411 01246899999999999999999999999999999999986531 3589999999
Q ss_pred ccCCcc------cc-cceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000979 680 YPKKQE------TF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSL 747 (1202)
Q Consensus 680 ~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 747 (1202)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... ..+..+.+++++++++.+++.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876421 12 246999999974 5677899999876533211 12334455678899999999753 3444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.|||+
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 577889999
Q ss_pred EEEecCCEEEEEcCCC
Q 000979 827 FLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~~ 842 (1202)
++|++ |++++.|+++
T Consensus 228 ~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 228 AVMQN-GRCVEQNRAA 242 (529)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 8999999864
No 310
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.9e-35 Score=303.76 Aligned_cols=169 Identities=28% Similarity=0.455 Sum_probs=146.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+. .++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcc
Confidence 357888887741 12358999999999999999999999999999999999876 45899999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ..+++.++|++|++.+++ .|++||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 3 234667999999988777 4998876 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+ +.+|++++|++ |+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CC
Confidence 99999999999999999999999999999999999999999777999999999985 34 68999999985 55
No 311
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.1e-35 Score=320.07 Aligned_cols=211 Identities=24% Similarity=0.347 Sum_probs=165.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|+++.|+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCc
Confidence 358899999998521 12358999999999999999999999999999999999876 458999999986
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--ELNPLRQSLVGLPGVSGL 756 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~L 756 (1202)
+.. ...++.++|++|++.+++ .||+||+.+...............+..++++++.+ |+.+..+.. ++.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcC
Confidence 532 234567999999988776 69999998753211000000011112346777777 666554443 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|++++|++ |+
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 99999999999999999999999999999999999999999999865 689999999986 45 45999999985 55
No 312
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.3e-34 Score=360.20 Aligned_cols=211 Identities=27% Similarity=0.372 Sum_probs=175.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 46999999999952 1348999999999999999999999999999999999877 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 751 (1202)
+.. ..+++.++||+|++.+++ .|++||+.++. ++.++++ +.++++.+++. +-.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 654 456788999999998886 69999998752 1233332 44455555543 3456666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.+.||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999998874 5799999999985 5788999999985
Q ss_pred CCEEEEEcCC
Q 000979 832 GGQEIYVGPL 841 (1202)
Q Consensus 832 gG~~~~~G~~ 841 (1202)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 899999985
No 313
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=1e-33 Score=355.37 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 779 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~illl 779 (1202)
+||.|++.|...+. . .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 1123578899999753 4443 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 9999999999999999999999878999999999985 446899999994 479999999863
No 314
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-34 Score=303.79 Aligned_cols=176 Identities=27% Similarity=0.461 Sum_probs=150.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHH
Confidence 367899888742 11348999999999999999999999999999999999876 45899999998653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 684 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 684 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
. ...++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567899999987775 6888876 135999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||++|||||+.+|++|+|||||+|||+.+++.+++.|+++. ++.|+|++||+++ .+ +.+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 5899999999986 34 57999999985 7888754
No 315
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.6e-34 Score=312.11 Aligned_cols=195 Identities=23% Similarity=0.332 Sum_probs=160.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC--CCCHHHHHHHHH
Q 000979 637 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP--FVTIYESLLFSA 714 (1202)
Q Consensus 637 ~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~ 714 (1202)
|++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999876 45899999998753 23567999999987643 479999998753
Q ss_pred HccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000979 715 WLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 793 (1202)
Q Consensus 715 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 793 (1202)
..... ........++.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223345788999999987666653 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 794 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 794 v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
+.+.|++++++|+|+|++||+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999986 578899999998 5 79999998753
No 316
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.8e-35 Score=358.26 Aligned_cols=189 Identities=28% Similarity=0.424 Sum_probs=158.4
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++||+|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|..+ +.+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 346999999999952 1248999999999999999999999999999999999877 45899999998
Q ss_pred cCC--cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000979 681 PKK--QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLP 751 (1202)
Q Consensus 681 ~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 751 (1202)
+++ ...+|+.++||+|++.+++ .|++||+.++. ++.+++ .++++++..++. +-.|+.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDATDE----ELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCCHH----HHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 765 3456788999999999886 59999999852 222333 255666666554 3457888875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
| ..||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++ .+++|+|+++|++
T Consensus 468 G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 468 G-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 5 469999999999999999999999999999999999999999999976 4589999999974
No 317
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-34 Score=307.96 Aligned_cols=200 Identities=24% Similarity=0.290 Sum_probs=161.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 71 (207)
T cd03369 5 GEIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGID 71 (207)
T ss_pred CeEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEE
Confidence 35889999998742 11358999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
... ...++.++|++|++.+++ .|++||+.+.. ....+ .+.+.++ + +. ..+.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----GGLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----CCCcCCH
Confidence 532 234567999999998776 59999996521 11111 1233333 2 22 2457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|++++|++ |+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~~-g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMDA-GEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEec
Confidence 99999999999999999999999999999999999999999984 5899999999986 34 45999999985 799888
Q ss_pred cCC
Q 000979 839 GPL 841 (1202)
Q Consensus 839 G~~ 841 (1202)
|++
T Consensus 205 g~~ 207 (207)
T cd03369 205 DHP 207 (207)
T ss_pred CCC
Confidence 763
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=281.07 Aligned_cols=195 Identities=22% Similarity=0.350 Sum_probs=166.8
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 703 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 703 (1202)
++.++|+++||++++||..+|.||||||||||+|+++.+.+ +.+|.+++.|++++. +.+|+.++||.|.+.+++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg- 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG- 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCccccc-
Confidence 45679999999999999999999999999999999999877 568999999998754 568889999999999998
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000979 704 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 783 (1202)
Q Consensus 704 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPt 783 (1202)
-||++|+.|...+|.... + +....+.++.+++.+..-+. .+..||||||||++|+|-|..-|+||+|||||
T Consensus 91 ~tVeDNlifP~~~r~rr~-d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRP-D----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred cchhhccccchHHhccCC-C----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 599999999887775322 1 22356788888887643222 24579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 784 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 784 sgLD~~~~~~v~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
|+||+.+++.|-++|.++. ++.+.++.+||++. +..+.+||++-+.. |+.
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 9999999999999999986 56899999999987 56789999999985 543
No 319
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=286.35 Aligned_cols=229 Identities=25% Similarity=0.297 Sum_probs=192.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++.+|+++++. +++.||++||++|++||+.+||||||||||||.++|+|.+.+..++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478899998874 22579999999999999999999999999999999999998888899999999987
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLS 757 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LS 757 (1202)
.. +..|..+...+|.|.-+|..|+.+.|..+...+.....-..+-...+++.++.+++.+ ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 54 2345667889999999999999999987765432211112234456788999999987 5555553 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhc--ceEEEEecCCEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQE 835 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~gG~~ 835 (1202)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|++++++||.. .+.++. |++-+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998999999999985 578887 99999995 899
Q ss_pred EEEcCCCccchhHHHHHhhC
Q 000979 836 IYVGPLGRHSCHLISYFEAI 855 (1202)
Q Consensus 836 ~~~G~~~~~~~~~~~~f~~~ 855 (1202)
+..|.+ ++..+++..
T Consensus 224 v~sG~~-----el~~~le~~ 238 (251)
T COG0396 224 VKSGDP-----ELAEELEEK 238 (251)
T ss_pred EecCCH-----HHHHHHHHh
Confidence 999996 466666665
No 320
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-34 Score=353.72 Aligned_cols=214 Identities=22% Similarity=0.363 Sum_probs=175.9
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+..++++|++|+|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 311 ~~~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~ 377 (569)
T PRK10789 311 RGELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDI 377 (569)
T ss_pred CCcEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCE
Confidence 346899999999852 12358999999999999999999999999999999999876 45899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccC
Q 000979 681 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 750 (1202)
Q Consensus 681 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 750 (1202)
+... ..+++.++||+|++.+++ .|++||+.++. ++.++++ ++++++..++. +..|+.+|.
T Consensus 378 ~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~ 447 (569)
T PRK10789 378 PLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQQE----IEHVARLASVHDDILRLPQGYDTEVGE 447 (569)
T ss_pred EHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC
Confidence 7643 356788999999998886 59999998742 1223222 34455554443 344666665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|++++|+
T Consensus 448 ~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ 523 (569)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe
Confidence 43 5699999999999999999999999999999999999999999999874 6899999999985 467799999998
Q ss_pred cCCEEEEEcCCC
Q 000979 831 RGGQEIYVGPLG 842 (1202)
Q Consensus 831 ~gG~~~~~G~~~ 842 (1202)
+ |+++..|+.+
T Consensus 524 ~-G~i~~~g~~~ 534 (569)
T PRK10789 524 H-GHIAQRGNHD 534 (569)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999853
No 321
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.6e-34 Score=353.32 Aligned_cols=212 Identities=25% Similarity=0.297 Sum_probs=172.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. ++++|+|+|+++++||.++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEE
Confidence 46999999999852 1247999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 751 (1202)
... ..+++.++||+|++.+++ .|++||+.++. +..++++ +.+.++..++ .+..|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC
Confidence 643 346788999999998886 79999998752 1223332 2233333332 23345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
...||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 -~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~ 544 (585)
T TIGR01192 469 -GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ 544 (585)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999999874 5899999999985 4577999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 545 -G~i~~~g~~~ 554 (585)
T TIGR01192 545 -GRLIEKGSFQ 554 (585)
T ss_pred -CEEEEECCHH
Confidence 8999999853
No 322
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4e-34 Score=320.79 Aligned_cols=216 Identities=23% Similarity=0.332 Sum_probs=188.7
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+++++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|... |.+|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 477888887764 4678999999999999999999999999999999999887 5699999999976
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.- ...+..||+|.|+..+.|++||.||+..+..-......+....+++++++.+.+|+.-..|..+ ..||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCc
Confidence 43 2345679999999999999999999998764322223455566778999999999987777775 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
||||||.|-++|.++|++|+|||||+-|-|...+.++++|++++++|+|||++||... |+.+.|||+.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999997 79999999999985 788776
Q ss_pred cC
Q 000979 839 GP 840 (1202)
Q Consensus 839 G~ 840 (1202)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 66
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5e-34 Score=294.56 Aligned_cols=165 Identities=27% Similarity=0.412 Sum_probs=142.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 1 i~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC---
Confidence 35788888873 12358999999999999999999999999999999999876 45899999873
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
+.++|++|++.++ ..|++||+.+. . .+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHH
Confidence 5689999998764 57999998642 0 24699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|+++|.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999876 589999999985 4579999999998774
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.2e-34 Score=302.05 Aligned_cols=175 Identities=29% Similarity=0.444 Sum_probs=145.5
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 684 (1202)
++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 2 VENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASL 66 (180)
T ss_pred eeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcC
Confidence 578888773 2358999999999999999999999999999999999876 458999999987542
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 685 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 685 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
..+++.++|++| +++.+++.+..++. ++.|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHH
Confidence 122344666666 44556665544443 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998766 899999999986 56789999999985 7887654
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=296.30 Aligned_cols=217 Identities=23% Similarity=0.345 Sum_probs=180.7
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-+.++||++.+ ++++||+|+|++|+|||-.+|+|||||||||||++++|...+. +|.+.+.|++
T Consensus 30 ~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~ 94 (257)
T COG1119 30 PLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRR 94 (257)
T ss_pred ceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeee
Confidence 458999999876 3578999999999999999999999999999999999987743 8899999987
Q ss_pred CCc----ccccceEEEeecC--CCCCCCCCHHHHHHHH--HHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000979 682 KKQ----ETFARISGYCEQN--DIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 753 (1202)
Q Consensus 682 ~~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 753 (1202)
... .+.|+.||+|.-+ ....+..+|+|-+.-+ +.+........++..+++..+++.+|+.+.+|+..
T Consensus 95 ~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~----- 169 (257)
T COG1119 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF----- 169 (257)
T ss_pred ccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----
Confidence 543 3568899999753 3344567888876532 22333331223455677899999999999998875
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
..||-|||||+-|||||+++|++|+||||++|||...+..+.+.|.+++.. +.++|+|||+++ ++-..+++++++++
T Consensus 170 ~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~ 248 (257)
T COG1119 170 GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE 248 (257)
T ss_pred hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC
Confidence 469999999999999999999999999999999999999999999999865 789999999987 78889999999985
Q ss_pred CCEEEEEcC
Q 000979 832 GGQEIYVGP 840 (1202)
Q Consensus 832 gG~~~~~G~ 840 (1202)
|++++.|.
T Consensus 249 -g~v~~~g~ 256 (257)
T COG1119 249 -GEVVAQGK 256 (257)
T ss_pred -Cceeeccc
Confidence 89999874
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.6e-34 Score=349.71 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=172.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 78899999874 2348999999999999999999999999999999999876 45799999887643
Q ss_pred c---ccccceEEEeecCCCC--C------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000979 684 Q---ETFARISGYCEQNDIH--S------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 752 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 752 (1202)
. ...++.++|++|++.. + ..+|++|++.+. .+.+++++++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 2234568999998643 1 146888876532 112345789999999988777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 753 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 753 ~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~- 210 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD- 210 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999877999999999986 57889999999985
Q ss_pred CEEEEEcCCC
Q 000979 833 GQEIYVGPLG 842 (1202)
Q Consensus 833 G~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 211 G~i~~~~~~~ 220 (490)
T PRK10938 211 CTLAETGERE 220 (490)
T ss_pred CEEEEeCCHH
Confidence 8999999864
No 327
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-34 Score=320.35 Aligned_cols=212 Identities=22% Similarity=0.299 Sum_probs=165.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++++|+. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 46899999998842 12358999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~ 751 (1202)
+.. ...++.++|++|++.+++ .|++||+.... ....+ .+.++++..++.+.. ++..+.
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~~- 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGLDAVVTE- 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhcccccCcEecc-
Confidence 643 234677999999998776 59999985321 11111 122333333332211 111211
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|+|++||+++ .+. .+||+++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999874 5899999999987 354 4999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+++
T Consensus 230 -G~i~~~g~~~ 239 (257)
T cd03288 230 -GILVECDTPE 239 (257)
T ss_pred -CEEEEeCCHH
Confidence 8999999864
No 328
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.6e-34 Score=355.48 Aligned_cols=201 Identities=29% Similarity=0.448 Sum_probs=167.7
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. .++++|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999952 12358999999999999999999999999999999999877 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+++ ..+++.++||+|++.+++ .|++||+.++. +..+++ .++++++..++.+ -.|+.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 653 456788999999999886 69999998752 122222 2556666666543 346777664
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 4699999999999999999999999999999999999999999999874 6899999999985 46789999875
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-33 Score=290.37 Aligned_cols=158 Identities=27% Similarity=0.413 Sum_probs=137.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECC
Confidence 36789998874 2358999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 684 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 684 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 13445777776 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|+++|++. ++.+.+|++++|.+ |++++
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 999999999999999999999999999999999999999999777999999999975 57788999999985 78764
No 330
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-33 Score=299.41 Aligned_cols=191 Identities=19% Similarity=0.287 Sum_probs=157.2
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|+ ++.+++ +||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 57889998873 123555 999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
... ++.++|++|++.+++.+||+||+.+..... . ..+.++++++.+++.+..++. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 345899999988888899999998764322 1 123467888999987766654 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceE
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
++|||||+.+|++|+|||||+|||+.++..+.+.|++..++|+|+|+++|+++ ..+.+|.+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877677899999999986 34445654
No 331
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=281.67 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=182.9
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC-cc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 681 (1202)
.++.+||+.+. ++..+|+|+||++.|||+-+|+|||||||||++++|+|... +..|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46778888775 45679999999999999999999999999999999999866 4489999999 55
Q ss_pred CCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 682 KKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 682 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
+.. +-.+..||-=+|.|..|+.+||+|||..+.....+ .... .+.+++++++++..||.+.+|...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhh--
Confidence 433 12345678889999999999999999987542211 1112 2345679999999999999988754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
.||.||||++.|++-|+.+|++|+||||++|+-.+.....-++|++++. +++|+++.||+. .+.+++|+|.+|++
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~ 221 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE 221 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec
Confidence 5999999999999999999999999999999999999999999999964 689999999997 58899999999996
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|.+...|+.+
T Consensus 222 -G~VL~EGsld 231 (249)
T COG4674 222 -GSVLAEGSLD 231 (249)
T ss_pred -cceeecccHH
Confidence 7999999864
No 332
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.1e-33 Score=323.33 Aligned_cols=184 Identities=28% Similarity=0.393 Sum_probs=158.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 000979 647 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 725 (1202)
Q Consensus 647 l~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 725 (1202)
|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|+...+ ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999876 458999999987643 223567999999999999999999999976432 12334
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000979 726 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 804 (1202)
Q Consensus 726 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~- 804 (1202)
+.+++++++++.+++.+..++. ++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4456688999999998877765 3579999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 805 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 805 g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|+|+|++||+++ ++.+++||+++|++ |+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999986 67889999999985 8999999874
No 333
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.1e-33 Score=352.28 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=176.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEE
Confidence 469999999999621 12458999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLP 751 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 751 (1202)
+++ ..+++.++|++|++.+++ .|++||+.++. ++.+++ .++++++.+++.+ -.|+.+|..
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR-----PDATDE----EVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 653 456778999999998875 79999998742 122222 2556666666542 235556554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
...||||||||++||||++++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++
T Consensus 474 -g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~ 549 (576)
T TIGR02204 474 -GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ 549 (576)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35699999999999999999999999999999999999999999999884 5899999999984 5688999999985
Q ss_pred CCEEEEEcCCC
Q 000979 832 GGQEIYVGPLG 842 (1202)
Q Consensus 832 gG~~~~~G~~~ 842 (1202)
|+++..|+.+
T Consensus 550 -g~~~~~g~~~ 559 (576)
T TIGR02204 550 -GRIVAQGTHA 559 (576)
T ss_pred -CEEEeeecHH
Confidence 8999999853
No 334
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-33 Score=301.59 Aligned_cols=194 Identities=22% Similarity=0.376 Sum_probs=148.8
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----
Confidence 35788888774100 001358999999999999999999999999999999999876 4589999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCC
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPGVSGL 756 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~L 756 (1202)
.++|++|++.++ ..|++||+.+... ...+ ...+.++.+++.+.. ++.... ....|
T Consensus 67 ------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l 128 (204)
T cd03250 67 ------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINL 128 (204)
T ss_pred ------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcC
Confidence 489999999887 4799999987421 1111 122333333332211 111221 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 757 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 757 SgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||||||++|||+|+.+|++++|||||+|||+.+++.+.+ +++++.++|+|||++||+++ .+.. +|++++|++
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~ 202 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN 202 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC
Confidence 9999999999999999999999999999999999999988 56666566899999999986 3444 999999985
No 335
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.2e-33 Score=345.65 Aligned_cols=208 Identities=19% Similarity=0.248 Sum_probs=167.8
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+. +..+|+|+|+++++||.+||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 321 ~~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 46999999999951 2358999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
..+ ..+++.++||+|++.+++ .|++|| . ... .++.+++.++.+++.+..+...+..+...|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 754 356788999999988775 567776 1 111 12346788888888754332111111246999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|++||+++ ..+.+|++++|++ |+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999976643 5899999999974 5788999999985 78876
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
...
T Consensus 530 ~~~ 532 (547)
T PRK10522 530 LTG 532 (547)
T ss_pred ecC
Confidence 643
No 336
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-32 Score=342.33 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 778 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~---~p~ill 778 (1202)
.+||.|.+.|...+. .. ....++++.+||... .+.. .+.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888765432 11 123578888999653 3443 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 779 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 779 lDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
|||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999985 346799999993 479999999864
No 337
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=294.74 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=169.5
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEee-cCCCCCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPFVT 705 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 705 (1202)
..+++||||+|++|++++++|||||||||+||+|+|... |.+|.|.++|...-. +.+-+.+++|. |.-.+.-.+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999877 558999999986532 23344556654 4344554556
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
+.|.+.....++ +.+.++-+++.+.+.+.+++.+..+.++ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777776654443 4555666778899999999988777764 67999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 786 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
||...+..+.+.|++..+ .+.||+.+||+.+ ++...||||++++. |+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999864 4899999999998 79999999999985 8999999973
No 338
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-33 Score=292.64 Aligned_cols=166 Identities=31% Similarity=0.498 Sum_probs=142.6
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.++. .+..+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|++.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhh
Confidence 357888887741 11258999999999999999999999999999999999876 45799999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 684 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 684 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
. ..+++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 234567899999987765 5888776 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|++||++. ++.. ||++++|++
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~~-~d~~~~l~~ 169 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLS-TIRD-ADRIIVLDD 169 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHHh-CCEEEEEcC
Confidence 999999999999999999999999999999999999999985 4799999999986 4555 999999985
No 339
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-33 Score=303.12 Aligned_cols=187 Identities=25% Similarity=0.337 Sum_probs=147.7
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-------ccccceEEEeecCCCCC
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 701 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 701 (1202)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 458999999999999999999999999999999999876 458999999986532 12346799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLPGVSGLSTEQRKRLTIAVELVANP 774 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 774 (1202)
..|++||+.+... ...+ ..+++++.+++.+..+ +.... .+..||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999987421 1111 1234555556543221 11111 24579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 775 SIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 775 ~illlDEPtsgLD~~~~~~v~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++|||||||+|||+.++..+++ .++.+.++|.|+|++||+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 66666566899999999986 34 57999999975
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.1e-33 Score=303.38 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=158.0
Q ss_pred EeecceEEEe-----CCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 631 LLNGVSGAFR-----PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 631 iL~~vs~~i~-----~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
.++|++++++ +||+++|+||||||||||+++|+|... +.+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 4666666665 799999999999999999999999876 45899999884 4799999987777899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
|+|++.+...... .. ....+++++.+++.+..++.+ +.||||||||++||+||+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----TH---PYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----cc---HHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 11 123578889999987766653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEE--EEcCCCccchhHHHHHhhC
Q 000979 786 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGPLGRHSCHLISYFEAI 855 (1202)
Q Consensus 786 LD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~--~~G~~~~~~~~~~~~f~~~ 855 (1202)
||+.++..+.+.|++++++ |+|||++||++. .+...+|++++|+. +..+ ..+++......+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999998754 899999999986 56778999999963 3222 3344433333455666655
No 341
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=340.94 Aligned_cols=219 Identities=23% Similarity=0.335 Sum_probs=185.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|++.++|.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 47899999988521 123568999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---c----ccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000979 683 KQE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 755 (1202)
Q Consensus 683 ~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 755 (1202)
... . .++.++|++|++.+++.+|+.||+.+..... ....++.++++.++++.+++.+..|+.. +.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 431 1 2467999999999999999999998865322 1233445567889999999987766653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 835 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~ 835 (1202)
||||||||++|||||+++|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ..+.|||+++|++ |++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998777999999999975 4567999999985 899
Q ss_pred EEEcCCCc
Q 000979 836 IYVGPLGR 843 (1202)
Q Consensus 836 ~~~G~~~~ 843 (1202)
+..|++++
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999854
No 342
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.8e-32 Score=304.03 Aligned_cols=202 Identities=20% Similarity=0.336 Sum_probs=157.8
Q ss_pred CCCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEE
Q 000979 598 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI 677 (1202)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 677 (1202)
+.....++++|+++.. +.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+
T Consensus 34 ~~~~~~l~i~nls~~~---------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i 96 (282)
T cd03291 34 SSDDNNLFFSNLCLVG---------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKH 96 (282)
T ss_pred CCCCCeEEEEEEEEec---------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE
Confidence 3445678999998741 247999999999999999999999999999999999876 45899999
Q ss_pred cCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccC
Q 000979 678 SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 750 (1202)
Q Consensus 678 ~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~ 750 (1202)
+| .++|++|++.+++ .||+||+.+.... ... .+.+.++.+++.+.. ++.++.
T Consensus 97 ~g----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG----------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC----------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 2799999988877 4999999864211 111 122333334433211 222221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||++||++. .+ ..+|++++|
T Consensus 156 -~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l 231 (282)
T cd03291 156 -GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL 231 (282)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence 23579999999999999999999999999999999999999998865 5554 5799999999986 34 679999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
++ |++++.|++.
T Consensus 232 ~~-G~i~~~g~~~ 243 (282)
T cd03291 232 HE-GSSYFYGTFS 243 (282)
T ss_pred EC-CEEEEECCHH
Confidence 85 8999999864
No 343
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-34 Score=309.72 Aligned_cols=216 Identities=27% Similarity=0.413 Sum_probs=179.9
Q ss_pred CCCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEc
Q 000979 599 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 678 (1202)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~ 678 (1202)
..++.+.|++|+|.|. +.+++|+++||++++|+.+|++||||+||||++++|-...+ ..+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEc
Confidence 4466799999999985 34678999999999999999999999999999999976554 668999999
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccC
Q 000979 679 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 679 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
|+++.. ...|+.+|.||||-.++. -|...|+.|+. +..+.++..+ .+.+.++ .+.+..|+.+|.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 998653 567889999999888874 68888988763 2334443322 2223333 356678899998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
.|.+ |||||||||+|||+++++|+||+|||.||+||..+++.++..|++.. .|+|.+++.|.++. .--+|.+++|+
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~ 471 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLD 471 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEee
Confidence 7765 99999999999999999999999999999999999999999999975 69999999999873 45679999998
Q ss_pred cCCEEEEEcCC
Q 000979 831 RGGQEIYVGPL 841 (1202)
Q Consensus 831 ~gG~~~~~G~~ 841 (1202)
+ |+++..|+-
T Consensus 472 ~-g~i~erg~h 481 (497)
T COG5265 472 N-GRIVERGTH 481 (497)
T ss_pred C-CEEEecCcH
Confidence 5 899999984
No 344
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=337.61 Aligned_cols=223 Identities=28% Similarity=0.378 Sum_probs=194.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.+..++++..|... +.+++++|+.|++||+.+++|||||||||++|+|+|..+ +.+|++.++|+++
T Consensus 564 ~~~~~~L~k~y~~~------------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i 629 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGK------------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDI 629 (885)
T ss_pred eEEEcceeeeecch------------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCcc
Confidence 45667777666421 118999999999999999999999999999999999877 5689999999887
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 683 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 683 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
.. ...++.+||+||+|.+++.+|.||++.+.++++.- ...+.++.++.+++.++|.+..|+.+ +.+||
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySg 701 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSG 701 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHcCChhhhccch-----hhCCC
Confidence 53 23677899999999999999999999999998853 33445566899999999999999985 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 838 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~ 838 (1202)
|+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.+|+|||.++ |...+|||+.+|.+ |++...
T Consensus 702 G~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ci 779 (885)
T KOG0059|consen 702 GNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCI 779 (885)
T ss_pred cchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEe
Confidence 9999999999999999999999999999999999999999999888889999999986 78889999999986 799999
Q ss_pred cCCCccchhHHHHHh
Q 000979 839 GPLGRHSCHLISYFE 853 (1202)
Q Consensus 839 G~~~~~~~~~~~~f~ 853 (1202)
|++ +++...|.
T Consensus 780 Gs~----q~LKsrfG 790 (885)
T KOG0059|consen 780 GSP----QELKSRYG 790 (885)
T ss_pred cCh----HHHHhhcC
Confidence 997 56776663
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2e-32 Score=294.51 Aligned_cols=186 Identities=18% Similarity=0.168 Sum_probs=150.0
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-EcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
+|+||||++++||+++|+||||||||||+++|+|..+ +.+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 6999999999999999999999999999999999866 4578886 666432 12345668889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 789 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~ 789 (1202)
+.+...... .+.++. .+.+.+..++.+..++.+ +.||||||||++|||||+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765431 222222 233445567766666653 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 790 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 790 ~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
++..+.+.|.+..+ ++|+|++||+++ .+.+.+|++++|.+ |++++.|+.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH
Confidence 99999998865433 478999999986 57788999999985 8999999874
No 346
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.8e-32 Score=337.46 Aligned_cols=210 Identities=18% Similarity=0.223 Sum_probs=167.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||+|+|+..+ ..++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 5699999999996210 012358999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCCCCCCCC
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-VGLPGVSGLS 757 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~LS 757 (1202)
+.+ ..+++.++||+|++.+++ .|+++|.. +. ..++.++++++.+++.+..+.. .|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~--------~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG--------EH----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhcccc--------cc----hhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 346778999999988775 47777731 11 1223467888888887654332 2222225699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 836 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~ 836 (1202)
||||||++|||||+++|++|+||||||+||+.+++.+.+.+. .+..+|+|+|++||+++ ..+.+|++++|++ |+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999998664 45556899999999985 5689999999985 7876
Q ss_pred E
Q 000979 837 Y 837 (1202)
Q Consensus 837 ~ 837 (1202)
.
T Consensus 550 ~ 550 (555)
T TIGR01194 550 K 550 (555)
T ss_pred E
Confidence 4
No 347
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-32 Score=289.32 Aligned_cols=189 Identities=26% Similarity=0.346 Sum_probs=159.6
Q ss_pred eeEEeeeEEEEecCchhhhcccccC-ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
-++.+|++..++..... ... ...+++||||+|++||+++|+|.||||||||-|+|.|+.. +.+|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~~-----~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKGF-----GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEeccccc-----CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 36788999888754210 111 3579999999999999999999999999999999999877 568999999987
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 760 (1202)
+.... .+++++++.++++.+|+.. ..++. +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 54211 2345567899999999865 33332 47899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
|||++|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ -+..++||+.+|.. |+++..|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEec
Confidence 99999999999999999999999999999999999999999765 999999999987 47788999999996 8999999
Q ss_pred CCC
Q 000979 840 PLG 842 (1202)
Q Consensus 840 ~~~ 842 (1202)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 964
No 348
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=332.38 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=167.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 57889998873 2458999999999999999999999999999999999876 34799999873
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHH-c----------cCCCCC------------------CHHHHHHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAW-L----------RLSPEV------------------DSETRKMFIDEV 734 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~----------~~~~~~------------------~~~~~~~~~~~~ 734 (1202)
+.++|++|++.+++.+||+|++.++.. . ...... ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999988899999999986421 0 000000 001123467889
Q ss_pred HHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000979 735 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 813 (1202)
Q Consensus 735 l~~l~l~~~~-~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H 813 (1202)
++.+|+.+.. +.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 233 357999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHhcceEEEEecCCEE-EEEcCCC
Q 000979 814 QPSIDIFEAFDELFLMKRGGQE-IYVGPLG 842 (1202)
Q Consensus 814 ~~~~~~~~~~d~v~~l~~gG~~-~~~G~~~ 842 (1202)
+++ .+.+.||++++|++ |++ ++.|+++
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 986 57789999999985 788 5888763
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.6e-32 Score=332.15 Aligned_cols=207 Identities=24% Similarity=0.341 Sum_probs=167.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++|. +++++|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 588999999883 12468999999999999999999999999999999999876 45799998752
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHH-cc------------CCCCCC--------------------HHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAW-LR------------LSPEVD--------------------SETRKM 729 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~--------------------~~~~~~ 729 (1202)
..+|||+|++.+++.+||.||+.++.. .+ ...... ..+.+.
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999999999999999987531 00 000000 001134
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000979 730 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809 (1202)
Q Consensus 730 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 809 (1202)
+++++++.+|+.. .+.. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778899999853 4544 3579999999999999999999999999999999999999999999886 24999
Q ss_pred EEecCCCHHHHHhcceEEEEecCCEEE-EEcCCC
Q 000979 810 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPLG 842 (1202)
Q Consensus 810 ~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~~ 842 (1202)
++||+++ .+.+.+|++++|.+ |+++ |.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHH
Confidence 9999986 57788999999985 7876 778753
No 350
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.6e-32 Score=256.45 Aligned_cols=191 Identities=25% Similarity=0.319 Sum_probs=162.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-eEEEEEEEcCccC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPK 682 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~ 682 (1202)
++.+||+... ++...|-++|++|.+||++-||||||||||||+..+.|...+. ..+|++++|+++.
T Consensus 3 l~l~nvsl~l-------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 3 LCLKNVSLRL-------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred eeeeeeeecC-------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 5667777443 3456899999999999999999999999999999999965432 5789999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000979 683 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 761 (1202)
Q Consensus 683 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 761 (1202)
+. ...+|++|..+||+.+||.++|.+|+.|+. +.....+.|++.++..++..||.+..+.- +..||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchH
Confidence 64 345789999999999999999999999863 44555567778889999999999887764 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCC
Q 000979 762 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPS 816 (1202)
Q Consensus 762 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~ 816 (1202)
-||++-|+|+..|+.++||||+|.||..-+.++.+..- ++...|..+|.+|||..
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999999999988764 44456999999999965
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.1e-32 Score=272.56 Aligned_cols=220 Identities=26% Similarity=0.354 Sum_probs=173.2
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCccc---ccceEEEeecCC--CCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARISGYCEQND--IHS 701 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~--~~~ 701 (1202)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|... +.+|+|.++|.+++... ....++-|+|+| ..+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 45679999999999999999999999999999999999876 56899999999886532 223467789997 568
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000979 702 PFVTIYESLLFSAWLRLSPEVDS---ETRKMFIDEVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 776 (1202)
Q Consensus 702 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~--l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~i 776 (1202)
+.+|+.||+..+..-........ ..+++...+-++. +||++..++.+| -|||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998754222222222 2333334444454 466777777765 4999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEE--cCCCcc--chhHHHH
Q 000979 777 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV--GPLGRH--SCHLISY 851 (1202)
Q Consensus 777 lllDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~--G~~~~~--~~~~~~~ 851 (1202)
|+|||-|++|||.++..|++.-.++.++ +.|.+++||.++ +..++-+|.++|+ +|++|.+ |+.... ..++...
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~g~~k~~L~v~dli~~ 247 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVTGEEKASLTVLDLIQM 247 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcccccccCCcHHHHHHH
Confidence 9999999999999999999999988654 789999999997 6889999999998 5899977 433221 2345566
Q ss_pred HhhC
Q 000979 852 FEAI 855 (1202)
Q Consensus 852 f~~~ 855 (1202)
|+.+
T Consensus 248 F~~~ 251 (263)
T COG1101 248 FEKI 251 (263)
T ss_pred HHHH
Confidence 6644
No 352
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=5.5e-32 Score=297.78 Aligned_cols=192 Identities=21% Similarity=0.244 Sum_probs=156.0
Q ss_pred EEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-----------EcCccCCcc--c-cc--ceEEE
Q 000979 630 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE--T-FA--RISGY 693 (1202)
Q Consensus 630 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 693 (1202)
.+|+|+| .+++||+++|+|||||||||||++|+|..+ +.+|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 4899999 599999999999999999999999999876 4589985 778765321 1 11 23689
Q ss_pred eecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000979 694 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 773 (1202)
Q Consensus 694 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 773 (1202)
++|+...++ .++.+++.+.. . ....+..++++++.+++.+..+.. ++.||||||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 999887777 47888877642 1 112234578999999998766654 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 774 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 774 p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
|++++|||||++||+.++..+.+.|++++++|+|||+++|+++ .+.+.||++++|+ |++.+.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999986 4667899999995 456665544
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=287.50 Aligned_cols=225 Identities=22% Similarity=0.310 Sum_probs=186.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 679 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 679 (1202)
-++.+|++..+... .+...++++|||++++||.+||+|.||||||-..+.+.|..++. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 36788888777532 35678999999999999999999999999999999998865431 3468999999
Q ss_pred ccCCc---cccc----ceEEEeecCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000979 680 YPKKQ---ETFA----RISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 680 ~~~~~---~~~~----~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
.+.-. ...+ ..|++++|+|. +.|..|+.+.+.-..++. ...+.++.++++.++++.+|+.+...+....
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 87532 2222 36899999984 567778887776554433 3556667778899999999999887776555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEE
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
| ++|||||||||.||+||+.+|++|+.||||++||..-+.+|+++|+++.++ |..++++|||+. -+.+++|||++|
T Consensus 155 P--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 155 P--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred C--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 4 689999999999999999999999999999999999999999999999755 999999999997 377889999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
.+ |+++..|+.+
T Consensus 232 ~~-G~ivE~~~t~ 243 (534)
T COG4172 232 QH-GEIVETGTTE 243 (534)
T ss_pred ec-cEEeecCcHH
Confidence 85 8999999864
No 354
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.8e-31 Score=328.31 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=164.8
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 478899999873 12458999999999999999999999999999999999876 45799988752
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHc-cC-----------CCCCCHH---------------------HHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWL-RL-----------SPEVDSE---------------------TRKM 729 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~ 729 (1202)
..+|||+|++.+++.+||+||+.++... +. ......+ +...
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3589999999999999999999875311 00 0000010 0113
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000979 730 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 809 (1202)
Q Consensus 730 ~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi 809 (1202)
+++++++.+++.. .+.. ++.|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3443 3579999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHhcceEEEEecCCEEE-EEcCCC
Q 000979 810 CTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPLG 842 (1202)
Q Consensus 810 ~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~~ 842 (1202)
++||+++ .+...||++++|.+ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999986 57788999999985 7865 778763
No 355
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=5e-30 Score=287.98 Aligned_cols=221 Identities=19% Similarity=0.307 Sum_probs=180.5
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
-++++|++..-+ .+.+.++||||++++||+++|.|-.|-|-+.|+.+|+|..+ +.+|+|.++|.++
T Consensus 257 vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEec
Confidence 367788775432 12356999999999999999999999999999999999875 3359999999986
Q ss_pred -C---cc-cccceEEEeecCC---CCCCCCCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000979 683 -K---QE-TFARISGYCEQND---IHSPFVTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 683 -~---~~-~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
. .. ..+..++|||.|. .+.+.+|+.||+.+...-+. ..-.+..+.++...++++.++.....-.
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 2 22 2345689999986 46788999999987654221 1123445667778899999988632211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
...+.||||++||+-+||+|.++|++|+..+||.|||..+...+.+.|.+.++.|+.|++++-+++ ++++++||+.+|.
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~ 477 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY 477 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee
Confidence 124679999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred cCCEEEEEcCCCc
Q 000979 831 RGGQEIYVGPLGR 843 (1202)
Q Consensus 831 ~gG~~~~~G~~~~ 843 (1202)
+ |+++...++++
T Consensus 478 ~-Gri~~~~~~~~ 489 (501)
T COG3845 478 E-GRIVGIVPPEE 489 (501)
T ss_pred C-Cceeccccccc
Confidence 5 89999888865
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.1e-31 Score=273.59 Aligned_cols=156 Identities=23% Similarity=0.320 Sum_probs=130.8
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+++++ +++++||+++|+||||||||||+|+|+|... +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 35678885 8999999999999999999999999999876 458999999842 678877421
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 787 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD 787 (1202)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhcceEEEEecCCEEEEE--cCCCccchhHHHHHh
Q 000979 788 ARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV--GPLGRHSCHLISYFE 853 (1202)
Q Consensus 788 ~~~~~~v~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~--G~~~~~~~~~~~~f~ 853 (1202)
+.++..+.+.++++++++ .|+|++||+++ .+.+.+|++++|+++ -.++. |+|....+.+-.|+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGE-PGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCC-CccceeccCCcchhHHHHHHHH
Confidence 999999999999987665 99999999986 567789999999864 44544 777543344445553
No 357
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.7e-31 Score=272.01 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=127.3
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
.+.+|+|+||++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4568999999999999999999999999999999953 2678888876321 12334677766
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 784 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~--p~illlDEPts 784 (1202)
.++++.+++... .+.. .+.||||||||++|||||+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 134566777542 3443 357999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||+.++..+.+.|+++++.|+|||++||+++ . .+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 99999999999999998777999999999985 3 478999999964
No 358
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=3e-31 Score=330.74 Aligned_cols=200 Identities=19% Similarity=0.274 Sum_probs=160.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|++.+++
T Consensus 450 ~~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC--
Confidence 4589999999874 12358999999999999999999999999999999999865 3468887753
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCCccccccccC----CCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGL----PGVSG 755 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~ 755 (1202)
++.++||+|++.+++. |++||+.++..... ..... ++.++++++.+++.+..++..|. .....
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~ 582 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDV 582 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccC
Confidence 4568999999988876 99999987532110 01111 23467889999987755443211 01357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||||||||++|||||+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.+|
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999998876 3899999999986 468899999997544
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.4e-30 Score=267.80 Aligned_cols=227 Identities=22% Similarity=0.291 Sum_probs=187.8
Q ss_pred eeEEeeeEEEEecCch----hh------h-cccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceE
Q 000979 603 SLTFDEVVYSVDMPEE----MK------V-QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 671 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~----~~------~-~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~ 671 (1202)
.+.++||+..++.... .+ . .........+|+||||++++||.+||+|+||||||||||+|+|..+ |.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 4677888877765531 00 0 0113456789999999999999999999999999999999999877 56
Q ss_pred EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 672 TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 672 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
+|+|.++|.-... ..-.-.+.|.+|.+||+.+-+.+. ..+.++.+++++++++..+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~l---------i~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPL---------IELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehh---------hhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 8999999964211 111223457799999999877654 4567778888999999999999988875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+.+|.||+-|++.|.|...+|+||++||-.+--|+.=++.-.+.++++.++++|+|+++|+++ .+.+.|||+++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 679999999999999999999999999999999999999999999999888899999999997 58999999999985
Q ss_pred CCEEEEEcCCCccchhHHHHHhh
Q 000979 832 GGQEIYVGPLGRHSCHLISYFEA 854 (1202)
Q Consensus 832 gG~~~~~G~~~~~~~~~~~~f~~ 854 (1202)
|++.+.|.+ +++.+++..
T Consensus 223 -G~i~~~G~~----~~vi~~Y~~ 240 (249)
T COG1134 223 -GQIRMEGSP----EEVIPAYEE 240 (249)
T ss_pred -CEEEEcCCH----HHHHHHHHH
Confidence 899999998 456666654
No 360
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=9.6e-31 Score=263.01 Aligned_cols=142 Identities=27% Similarity=0.412 Sum_probs=126.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|+++.|. +..+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe---
Confidence 35788888763 1258999999999999999999999999999999999876 45899999983
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 763 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR 763 (1202)
+.++|++| ||+||+||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 46789888 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 764 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 764 v~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
++|||||+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ++.+.+|++++|++
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~ 142 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED 142 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999876 479999999986 56788999999985
No 361
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=292.40 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=155.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-+.++||+|.|+. +-.++++++|-+.+++.+|+|||||||||||||++.|... +..|.+.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 45789999998852 1257999999999999999999999999999999999876 456776543322
Q ss_pred CCcccccceEEEeecC--CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000979 682 KKQETFARISGYCEQN--DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 759 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 759 (1202)
.+++..|+ +.+.-..++-|++.=.. ..+.+.+.+..++..+||....+.. ..+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 12233333 22233456667654221 1122345578899999998544432 25689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEc
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 839 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G 839 (1202)
||+||..|+.++..|.+|+|||||+|||..+...+-+.|.++ .-+||+++||... +-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999765 3489999999874 778899999999888888888
Q ss_pred CC
Q 000979 840 PL 841 (1202)
Q Consensus 840 ~~ 841 (1202)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.3e-30 Score=350.46 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=165.9
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++|+|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|..+ +.+|++.
T Consensus 613 ~~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~----- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV----- 675 (1495)
T ss_pred CcEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE-----
Confidence 369999999999621 12458999999999999999999999999999999999876 3455442
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 754 (1202)
..++.++||+|++.+++ .|++|||.|+. ..+++ +.+++++..++ .+..++.+|..|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCC------ccCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 24567999999999886 69999999863 12222 24556665554 3445678887654
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||++||||+.++|+|++||||||+||+++++.+.+. ++.. .+|+|+|++||+++ ....+|+|++|+ +|
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G 815 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EG 815 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CC
Confidence 5999999999999999999999999999999999999988765 5543 36899999999985 578899999998 58
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
+++..|+.++
T Consensus 816 ~i~~~Gt~~e 825 (1495)
T PLN03232 816 MIKEEGTFAE 825 (1495)
T ss_pred EEEEecCHHH
Confidence 9999998643
No 363
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.6e-30 Score=349.07 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=167.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEE-EEEEEcCc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY 680 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~-G~i~~~g~ 680 (1202)
..++++|++|+|+.. .++.+|+|+|+++++||.++|+||||||||||+++|.|..+ +.+ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--- 677 (1622)
T ss_pred CceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---
Confidence 369999999999621 12458999999999999999999999999999999999876 457 78864
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 753 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 753 (1202)
++.++||+|++.++. .|++|||.|+. ..++ ++.+++++..+|. +-.++.+|..|.
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~------~~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~ 739 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGS------PFDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCC------cccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCC
Confidence 456899999999886 79999999863 1222 2356666666654 345777887654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
.||||||||++|||||.++|+|++||||||+||+++++.+.+ .++.+ .+|+|+|++||+++ ....+|+|++|+ +
T Consensus 740 -~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~-l~~kTvIlVTH~l~--~l~~aD~Ii~L~-~ 814 (1622)
T PLN03130 740 -NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE-LRGKTRVLVTNQLH--FLSQVDRIILVH-E 814 (1622)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-hcCCEEEEEECCHh--HHHhCCEEEEEe-C
Confidence 599999999999999999999999999999999999988764 56654 35899999999985 578899999998 5
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|+++..|+.++
T Consensus 815 G~i~e~Gt~~e 825 (1622)
T PLN03130 815 GMIKEEGTYEE 825 (1622)
T ss_pred CEEEEeCCHHH
Confidence 89999998643
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=256.27 Aligned_cols=178 Identities=27% Similarity=0.334 Sum_probs=155.6
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc--ccccceEEEeecCCCCCCCC
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFV 704 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 704 (1202)
+...++.++||++.+||.+-|.||||||||||||+|+|... +..|+|.++|.++.. +.+++.+-|+-..+.+-+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 45678999999999999999999999999999999999877 458999999988754 22456678888889999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 705 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 705 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
||+|||.|-..+... .+ ...+.++++.+||.+..|.+++ .||-||||||+|||-+++.+++.+||||++
T Consensus 91 Ta~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999998765432 11 2337889999999999998864 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000979 785 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 817 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~ 817 (1202)
+||.+....+-..+..-+.+|-.||.+||||..
T Consensus 160 aLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999998888889999999999863
No 365
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=5.7e-30 Score=248.50 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=173.5
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcc---cccceEEEeecCCC--CCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI--HSP 702 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~ 702 (1202)
...+++.|||++++|+.+|++|.||||||||.|+|+|... |.+|+|.+||++..-. ...+.+-+++||+. +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 3458999999999999999999999999999999999877 5689999999986432 23467889999985 456
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 781 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDE 781 (1202)
.+.+.+-|... ++++.+.+.+.|.+++.+.++.+||-+ .++.. ++.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 66666666554 455667788888999999999999864 33333 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
...+||...+.++.++..++.++ |.+-|.++.+.. -+..+.|+|++|++ |+++..|.+.
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t~ 235 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGSTA 235 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCChh
Confidence 99999999999999999998754 999999999987 47888999999996 8999999874
No 366
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=315.08 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=156.9
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++||+++|. ++.+|+||||+|++||++||+||||||||||||+|+|... +.+|+|.++|..
T Consensus 2 i~i~nls~~~g-------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRRG-------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC--
Confidence 57889998873 3468999999999999999999999999999999999866 458999998742
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHH-----------------------HccC-CCCCCHHHHHHHHHHHHHHcC
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFSA-----------------------WLRL-SPEVDSETRKMFIDEVMELVE 739 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~l~~l~ 739 (1202)
.++|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888864332 245544432100 0000 000000122346788999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000979 740 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818 (1202)
Q Consensus 740 l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 818 (1202)
+. +..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||.. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556553 479999999999999999999999999999999999999999998875 569999999986 5
Q ss_pred HHHhcceEEEEecCCEEE-EEcCC
Q 000979 819 IFEAFDELFLMKRGGQEI-YVGPL 841 (1202)
Q Consensus 819 ~~~~~d~v~~l~~gG~~~-~~G~~ 841 (1202)
+.+.||++++|++ |++. |.|+.
T Consensus 209 l~~~~d~i~~L~~-G~i~~~~g~~ 231 (638)
T PRK10636 209 LDPIVDKIIHIEQ-QSLFEYTGNY 231 (638)
T ss_pred HHHhcCEEEEEeC-CEEEEecCCH
Confidence 7789999999985 7775 66764
No 367
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.3e-29 Score=256.11 Aligned_cols=151 Identities=33% Similarity=0.544 Sum_probs=131.4
Q ss_pred EeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc-
Q 000979 606 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 684 (1202)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 684 (1202)
++|+++.|+ ++.+|+++|+++++||+++|+||||||||||+++|+|..+ +..|++.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccC
Confidence 467777763 1358999999999999999999999999999999999876 458999999986542
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000979 685 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 762 (1202)
Q Consensus 685 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 762 (1202)
...++.++|++| |||||+|
T Consensus 67 ~~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~ 87 (157)
T cd00267 67 PLEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQ 87 (157)
T ss_pred CHHHHHhceEEEee-----------------------------------------------------------CCHHHHH
Confidence 223456777777 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 763 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 763 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|++||++++.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|+++ ++...+|+++++.+
T Consensus 88 r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 88 RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998766899999999986 46677899999985
No 368
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.8e-29 Score=308.65 Aligned_cols=181 Identities=25% Similarity=0.264 Sum_probs=148.9
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEE-----------EcCccCCcc-----cccceEE
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT-----------ISGYPKKQE-----TFARISG 692 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~ 692 (1202)
..+|++++ .+++||+++|+||||||||||||+|+|... +..|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 999999999999999999999999999876 3479987 888765321 1112345
Q ss_pred EeecCCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH
Q 000979 693 YCEQNDIHSPF---VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 769 (1202)
Q Consensus 693 ~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~a 769 (1202)
+.+|.....|. .||+|++... +.+..++++++.+++.+..|+.+ ..||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 55654433332 3999998631 12245789999999988777764 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 770 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 770 L~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|++++|.+
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999987 999999999986 57788999999963
No 369
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=7.5e-29 Score=309.17 Aligned_cols=203 Identities=23% Similarity=0.296 Sum_probs=155.1
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++++|++++|. ++.+|+||||++++||+++|+|||||||||||++|+|... +.+|+|.++|..
T Consensus 4 l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~-- 66 (635)
T PRK11147 4 ISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL-- 66 (635)
T ss_pred EEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC--
Confidence 78899998873 2458999999999999999999999999999999999866 457999988631
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHH------------------------------HHccC-CCCCCHHHHHHHHH
Q 000979 684 QETFARISGYCEQNDIHSPFVTIYESLLFS------------------------------AWLRL-SPEVDSETRKMFID 732 (1202)
Q Consensus 684 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~~~ 732 (1202)
.++|++|.+......+|.+++..+ ..+.. .......+.+.+++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 246777755433334555543211 00000 00000011234578
Q ss_pred HHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 000979 733 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 812 (1202)
Q Consensus 733 ~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~ 812 (1202)
++++.+|+.. ++. +..|||||||||+|||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||++|
T Consensus 141 ~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEe
Confidence 8999999863 443 3579999999999999999999999999999999999999999999887 25999999
Q ss_pred cCCCHHHHHhcceEEEEecCCEEE-EEcCC
Q 000979 813 HQPSIDIFEAFDELFLMKRGGQEI-YVGPL 841 (1202)
Q Consensus 813 H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~ 841 (1202)
||+. .+.+.||++++|++ |+++ |.|+.
T Consensus 211 Hd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 238 (635)
T PRK11147 211 HDRS-FIRNMATRIVDLDR-GKLVSYPGNY 238 (635)
T ss_pred CCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence 9986 57788999999985 7886 55765
No 370
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=6.9e-29 Score=334.27 Aligned_cols=204 Identities=24% Similarity=0.392 Sum_probs=164.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++|++|.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 635 ~~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-- 699 (1522)
T TIGR00957 635 NSITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-- 699 (1522)
T ss_pred CcEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--
Confidence 36999999999852 12358999999999999999999999999999999999876 4589999986
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLPGVS 754 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 754 (1202)
.++||+|++.++ +.||+||+.|+.. .+.+. .+++++..++ .+..++.+|..+ .
T Consensus 700 --------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~----~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~ 759 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKY----YQQVLEACALLPDLEILPSGDRTEIGEKG-V 759 (1522)
T ss_pred --------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhcCCCCCceecCCC-C
Confidence 489999998876 5799999998631 12221 2233333322 223355666654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 755 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 755 ~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~--~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
.||||||||++|||||.++|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|++++|+ +
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~ 836 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-G 836 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-C
Confidence 69999999999999999999999999999999999999999998653 235799999999986 456699999998 5
Q ss_pred CEEEEEcCCCc
Q 000979 833 GQEIYVGPLGR 843 (1202)
Q Consensus 833 G~~~~~G~~~~ 843 (1202)
|+++..|+.++
T Consensus 837 G~i~~~g~~~~ 847 (1522)
T TIGR00957 837 GKISEMGSYQE 847 (1522)
T ss_pred CeEEeeCCHHH
Confidence 89999998743
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=3.8e-28 Score=325.96 Aligned_cols=191 Identities=21% Similarity=0.351 Sum_probs=151.4
Q ss_pred eEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 629 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 629 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 568999999999999999999999999999999999876 4589999987 3899999999887 59999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFID--EVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 785 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~l-~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsg 785 (1202)
|+.|+.. .+.+..++.++ .+.+.++. .+..++.+|..+ ..||||||||++|||||+.+|++++|||||||
T Consensus 506 NI~~g~~------~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 506 NIIFGLS------YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHhccc------cchHHHHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9998632 11111111111 11122211 122345566654 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 786 LDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 786 LD~~~~~~v~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
||+.+++.+.+. ++++. +|+|+|++||+++ ..+.+|++++|+ +|+++..|+.++
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~ 633 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSE 633 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999984 66654 5899999999986 346799999998 589999998653
No 372
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=237.39 Aligned_cols=211 Identities=28% Similarity=0.326 Sum_probs=156.3
Q ss_pred eEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCC
Q 000979 604 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 683 (1202)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 683 (1202)
++.++++..|. ...--+||||.+.|||+++|+|.|||||||||++|+++.. +..|+|.+.-.+-.
T Consensus 7 L~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCC
Confidence 55667766553 2234789999999999999999999999999999999987 45788877653211
Q ss_pred --------ccc----ccceEEEeecCCCCCCCC------CHHHHHH-HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 000979 684 --------QET----FARISGYCEQNDIHSPFV------TIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 744 (1202)
Q Consensus 684 --------~~~----~~~~~~~v~q~~~~~~~l------Tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 744 (1202)
+.. .|..-|+|.|+|.-=-.+ .+.|-+. .+++-. ...++...++++.+++...
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~~- 143 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDLD- 143 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCcc-
Confidence 111 223459999986432222 3334332 121111 1234446778888877542
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhc
Q 000979 745 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 823 (1202)
Q Consensus 745 ~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 823 (1202)
++.. .++..|||++||+.|||-|++.|+++|+||||-|||..-+..++++++.+..+ |..++++|||.. -..-++
T Consensus 144 -RiDD--~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla 219 (258)
T COG4107 144 -RIDD--LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLA 219 (258)
T ss_pred -cccC--cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhh
Confidence 2211 24679999999999999999999999999999999999999999999999765 999999999975 244568
Q ss_pred ceEEEEecCCEEEEEcCCC
Q 000979 824 DELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 824 d~v~~l~~gG~~~~~G~~~ 842 (1202)
||.++|.+ |+++..|-.+
T Consensus 220 ~rlmvmk~-g~vve~GLTD 237 (258)
T COG4107 220 DRLMVMKQ-GQVVESGLTD 237 (258)
T ss_pred hcceeecC-CCEecccccc
Confidence 99999985 8999999765
No 373
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-29 Score=294.26 Aligned_cols=108 Identities=23% Similarity=0.362 Sum_probs=102.1
Q ss_pred HHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEe
Q 000979 50 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 129 (1202)
Q Consensus 50 il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiai 129 (1202)
.=.+.++++.+||.|| |+|.+|||||||||||||||++||+||+|||||||||++||..|+++|.+.. +++|+++||
T Consensus 584 h~FI~~~p~gY~T~VG-EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIA- 660 (716)
T KOG0058|consen 584 HEFITNFPDGYNTVVG-EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIA- 660 (716)
T ss_pred HHHHHhCccccccccC-CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEe-
Confidence 4478899999999999 7889999999999999999999999999999999999999999999998865 478889999
Q ss_pred cCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 130 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 130 hQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||++|++.||+|+|+++|+|+|.|+|+||++
T Consensus 661 --HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 661 --HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred --hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999999995
No 374
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=9.2e-28 Score=260.64 Aligned_cols=197 Identities=19% Similarity=0.245 Sum_probs=132.0
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHH-HHHhC--CCC--C--ceEEEEEEEcCc-cCCccccc-ceEEEeecCC
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-DVLAG--RKT--G--GYITGNITISGY-PKKQETFA-RISGYCEQND 698 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~q~~ 698 (1202)
+..+|+||||++++||+++|+||||||||||+ ..+.. ... . .+..+. .+... .......+ ....+..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 45689999999999999999999999999995 44432 100 0 000000 00000 00001111 1233333433
Q ss_pred C--CCCCCCHH---HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000979 699 I--HSPFVTIY---ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVA 772 (1202)
Q Consensus 699 ~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~ 772 (1202)
. ..|..+|. |...+...+. ..+...++ .+.++.+++.+ ..+.. ++.||||||||++|||+|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 3222221111 11111222 46788899875 34544 35799999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEE------ecCCEEEEEc
Q 000979 773 NP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM------KRGGQEIYVG 839 (1202)
Q Consensus 773 ~p--~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l------~~gG~~~~~G 839 (1202)
+| ++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ . .+.||++++| + +|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~-~~~~d~i~~l~~~~~~~-~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-T-IRAADHVIDIGPGAGVH-GGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-H-HHhCCEEEEeCCCcccc-CCEEEecC
Confidence 98 599999999999999999999999999877999999999985 3 4789999999 5 58999876
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=5.1e-28 Score=287.32 Aligned_cols=206 Identities=26% Similarity=0.340 Sum_probs=163.4
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccC
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 682 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 682 (1202)
.++++|++++| +.+++|+|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC--
Confidence 46788888887 34679999999999999999999999999999999999876 44788876542
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHc-c------------CCCC--------------CCHHHHHHHHHHHH
Q 000979 683 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWL-R------------LSPE--------------VDSETRKMFIDEVM 735 (1202)
Q Consensus 683 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~------------~~~~--------------~~~~~~~~~~~~~l 735 (1202)
-.++|++|++...+..||.+.+.-+..- . .... .+.-+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 2479999999999999999987654210 0 0000 00001124567788
Q ss_pred HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000979 736 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 815 (1202)
Q Consensus 736 ~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~ 815 (1202)
..+|+.+. ++.+ ++||||||.||++|++|+.+|++|||||||++||..+...+-+.|++. .| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 5554 579999999999999999999999999999999999999999999864 46 999999995
Q ss_pred CHHHHHhcceEEEEecCCEEEEEcCC
Q 000979 816 SIDIFEAFDELFLMKRGGQEIYVGPL 841 (1202)
Q Consensus 816 ~~~~~~~~d~v~~l~~gG~~~~~G~~ 841 (1202)
. .+-+.|++|+-+++|.-..|.|.-
T Consensus 211 ~-FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 211 Y-FLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred H-HHHHHhhheEEecCCceeEecCCH
Confidence 4 577889999999975455566653
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=7e-28 Score=299.63 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=144.4
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-ceEEEEEEEcCc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGY 680 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~ 680 (1202)
..+.++|++++|. ++.+|+|+||+|++||.+||+|||||||||||++|+|+... -+..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4589999999983 23589999999999999999999999999999999986311 122344443222
Q ss_pred cC-----Cc------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHH------------------
Q 000979 681 PK-----KQ------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE------------------ 725 (1202)
Q Consensus 681 ~~-----~~------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~------------------ 725 (1202)
.. .. ...++.+++++|++.+... ++.++... .. ....+.+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~---~~~~~~~~~~~r~~~~~~~~~~~~~ 317 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-AN---KDGVDKDAVSQRLEEIYKRLELIDA 317 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-cc---ccccchHHHHHHHHHHHHHHHhcCc
Confidence 10 00 0001123444443221110 11111000 00 0000111
Q ss_pred -HHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000979 726 -TRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 803 (1202)
Q Consensus 726 -~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~ 803 (1202)
..++++.++++.+|+. +..++. +..||||||||++||++|+.+|++|||||||++||+.+...+.+.|+++
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 390 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-- 390 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--
Confidence 1233456677777775 334444 3579999999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEcCC
Q 000979 804 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGPL 841 (1202)
Q Consensus 804 ~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G~~ 841 (1202)
+.|||+++|+.. .+.+.||++++|++ |++. |.|+.
T Consensus 391 -~~tviivsHd~~-~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 391 -PKTFIVVSHARE-FLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred -CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 679999999975 57788999999985 7886 66764
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=1.9e-27 Score=319.33 Aligned_cols=190 Identities=24% Similarity=0.300 Sum_probs=146.6
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 707 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 707 (1202)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++||+|++.++ ..||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 4579999999999999999999999999999999999876 457888753 4589999999876 47999
Q ss_pred HHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 708 ESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 708 e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
||+.|+.. .+.+..+ ...++.++.+ .+..++.+|.. ...||||||||++|||||+.+|++++||||
T Consensus 739 enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 739 GNILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 99998521 1111100 1122233333 11123344443 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCC
Q 000979 783 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 842 (1202)
Q Consensus 783 tsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~ 842 (1202)
|++||+.+++.+++.+.....+|+|+|++||+++ ..+.+|++++|++ |++++.|+.+
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999998888754222235899999999975 4578999999984 8999999864
No 378
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.8e-27 Score=256.01 Aligned_cols=195 Identities=25% Similarity=0.288 Sum_probs=148.6
Q ss_pred EeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh--------CCCC--C---ceEE------EEEEEcCccCCccc-----
Q 000979 631 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKT--G---GYIT------GNITISGYPKKQET----- 686 (1202)
Q Consensus 631 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~--------g~~~--~---~~~~------G~i~~~g~~~~~~~----- 686 (1202)
-|+|||.+|+.|++++|.|+||||||||++.+. +... + .... --+.++..|+....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999998552 1100 0 0111 23666666543210
Q ss_pred --------ccc----------------eEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 000979 687 --------FAR----------------ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 742 (1202)
Q Consensus 687 --------~~~----------------~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 742 (1202)
.|+ .+.|..++......+||.|++.|...+. . .+++.++++.+||..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~---~~~~~~~L~~vgL~~ 160 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------K---IARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------h---HHHHHHHHHHcCCch
Confidence 000 1345555555567899999999876432 1 234578899999976
Q ss_pred c-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000979 743 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 818 (1202)
Q Consensus 743 ~-~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~ 818 (1202)
. .+.. .+.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|+++
T Consensus 161 l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-- 233 (261)
T cd03271 161 IKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-- 233 (261)
T ss_pred hhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--
Confidence 3 4443 357999999999999999996 7999999999999999999999999999888999999999985
Q ss_pred HHHhcceEEEEe-----cCCEEEEEcCC
Q 000979 819 IFEAFDELFLMK-----RGGQEIYVGPL 841 (1202)
Q Consensus 819 ~~~~~d~v~~l~-----~gG~~~~~G~~ 841 (1202)
..+.+|+++.|. +||++++.|++
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 456899999994 47999999974
No 379
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=4.3e-27 Score=298.50 Aligned_cols=206 Identities=22% Similarity=0.385 Sum_probs=169.9
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|.+++-+.. +....|+|||++|++|+++||+||-|||||+||.+|.|..+ ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS 583 (1381)
T ss_pred CceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe
Confidence 4468889999886421 12237999999999999999999999999999999999876 67899999884
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPGV 753 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 753 (1202)
++||+|++-++. .||||||.|+.. .+ +++.+++++.+.|. +.-.|.+|..|+
T Consensus 584 ----------iaYv~Q~pWI~n-gTvreNILFG~~------~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQN-GTVRENILFGSP------YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhhC-CcHHHhhhcCcc------cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 799999998874 799999999742 22 23356677766654 334566777776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 754 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 754 ~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
.||||||||+++|||+-+|.+|++||.|.|++|++..+.+.+..-+-.-+++|+|++|||. +..+.+|.|++|++ |
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~-G 718 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD-G 718 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC-C
Confidence 4999999999999999999999999999999999999988876544344689999999986 47889999999985 8
Q ss_pred EEEEEcCCCc
Q 000979 834 QEIYVGPLGR 843 (1202)
Q Consensus 834 ~~~~~G~~~~ 843 (1202)
++...|+.++
T Consensus 719 ~I~~~Gty~e 728 (1381)
T KOG0054|consen 719 KIVESGTYEE 728 (1381)
T ss_pred eEecccCHHH
Confidence 9999999854
No 380
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=229.32 Aligned_cols=213 Identities=23% Similarity=0.262 Sum_probs=160.1
Q ss_pred eeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-
Q 000979 603 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 681 (1202)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 681 (1202)
.+..+|++.+...... ..-..++|+|+||+++.||++++=||||+|||||||+|-|.+. +.+|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcc
Confidence 3556677655443210 1124578999999999999999999999999999999998765 457888876532
Q ss_pred -CC-----c----ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000979 682 -KK-----Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 751 (1202)
Q Consensus 682 -~~-----~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 751 (1202)
++ . .-.++.+|||.|.-...|.....|-..-...- .+.+.+..++++..++..+++.+..=.. +
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L---a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL---A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC---C
Confidence 11 1 12345789999987777766554444332221 2345555667788999999987543222 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 752 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 752 ~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
+...||||+|||.|||.++.+-+||+|||||+.||..++..++++|++.+.+|..+|=+-||-+ --...+||++-+..
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 3579999999999999999999999999999999999999999999998788999999999843 22456899988764
No 381
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=2.1e-27 Score=238.02 Aligned_cols=134 Identities=34% Similarity=0.531 Sum_probs=118.3
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
|+|||+++++||+++|+||||||||||+++|+|... +.+|.|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999876 458999999998765 345678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 784 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPts 784 (1202)
| ..++.++++++.+++.+..++.++... ..||||||||++||+||+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 123347899999999888787775543 6799999999999999999999999999996
No 382
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=1.3e-26 Score=245.43 Aligned_cols=168 Identities=18% Similarity=0.244 Sum_probs=130.5
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-------ceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000979 633 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 705 (1202)
Q Consensus 633 ~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 705 (1202)
+++++++++| +++|+||||||||||+++|+|...+ +...|++.++|.+......++.+++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999986421 122346777777654333457899999998665
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV----ANPSIIFMDE 781 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~----~~p~illlDE 781 (1202)
|.. . . +++++++++. .+..++. +..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 1235666666 3344443 3579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||+|||+.....+.+.|+++++ +.|||++||++. ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999975 457899999998654
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=5.3e-25 Score=242.30 Aligned_cols=196 Identities=22% Similarity=0.272 Sum_probs=143.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 711 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 711 (1202)
|+==.+++..||+++++||||-||||+.++|+|..++ .+|. .. .-.++|=||--.--...||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 3333567888999999999999999999999998763 3454 11 123567777544445689999776
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000979 712 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 791 (1202)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 791 (1202)
-...-+... .-...++++-|+|.+..++.+ .+|||||.|||+||.+|.+++++.+||||++-||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433211111 112357888889988888875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCC---CccchhHHHHHhhC
Q 000979 792 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL---GRHSCHLISYFEAI 855 (1202)
Q Consensus 792 ~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~---~~~~~~~~~~f~~~ 855 (1202)
..+-+.||+.... ++|.+++-||.-. +--+.||+++.. |+---+|.. ....+.+..|.+.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHc
Confidence 9999999999754 7899999999753 344578888875 333333322 11223455666666
No 384
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=6.6e-27 Score=225.76 Aligned_cols=194 Identities=25% Similarity=0.418 Sum_probs=164.3
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
|-.+|+.+..||+.-++|||||||||||..++|..+ -+|+|.++|.+... ....|+.+|..|+..-...+.|+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 778999999999999999999999999999999875 37999999998754 345567789988876666788888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--CEEEEeC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-----NP--SIIFMDE 781 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~-----~p--~illlDE 781 (1202)
.+... . +.+++...++++.+.+++.+...+. ++.|||||-|||-+|-..+. || ++|+|||
T Consensus 92 YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----Q----PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----C----chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 87643 2 2355666788999999998766554 46799999999999977654 55 5999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcCCCc
Q 000979 782 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 843 (1202)
Q Consensus 782 PtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~~~~ 843 (1202)
|.++||...+..+-..|.+++++|.+||++.||.+ ...+.+|++.+|++ |+++..|..++
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhh
Confidence 99999999999999999999999999999999998 57889999999986 79999999865
No 385
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-26 Score=251.74 Aligned_cols=147 Identities=27% Similarity=0.317 Sum_probs=118.3
Q ss_pred hhHHHHHHH-HHHHhcCCCCCCCHH---------------HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCccc
Q 000979 7 PAEMLTELA-RREKAAGIKPDPDID---------------VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 70 (1202)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~ 70 (1202)
+.|+....- ..|++.|+.||.-+. ++..++..+.+..+ + --.+-.|++.+||.|| |++-
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aq--i--~~fi~~lP~gy~t~Vg-ergl 398 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ--I--HDFIQSLPEGYDTGVG-ERGL 398 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhh--h--hHHHHhCchhhhcccc-hhee
Confidence 455555332 337889999985432 22222221111111 1 1234578999999999 6667
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCc
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
.|||||||||||||.|+++|+||+||||||+||+.+|.+++.+|++.+ .++||++|+ ||++|+-.||.|+||++|+
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlvia---hrlsti~~adeiivl~~g~ 474 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIA---HRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEe---ehhhhccCCceEEEeeCCE
Confidence 799999999999999999999999999999999999999999999976 689999999 9999999999999999999
Q ss_pred EEEEcCcchHHH
Q 000979 151 IVYQGPRELVLE 162 (1202)
Q Consensus 151 vvy~G~~~el~~ 162 (1202)
++|.|+|+||+.
T Consensus 475 i~erg~h~~ll~ 486 (497)
T COG5265 475 IVERGTHEELLA 486 (497)
T ss_pred EEecCcHHHHHH
Confidence 999999999996
No 386
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.7e-26 Score=250.70 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=120.0
Q ss_pred hhHHHHHH-HHHHHhcCCCCCCCHH---------------HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCccc
Q 000979 7 PAEMLTEL-ARREKAAGIKPDPDID---------------VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 70 (1202)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~ 70 (1202)
|-|+++.. .--|+..|+.||..+. +.-++.-. +.+..+-.=++++++++++|+|| |+|-
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneevya----AAkAA~IHdrIl~fPegY~t~VG-ERGL 673 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYA----AAKAAQIHDRILQFPEGYNTRVG-ERGL 673 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHH----HHHHhhHHHHHhcCchhhhhhhh-hccc
Confidence 45666643 3346788999985442 11111111 11112223467899999999999 6666
Q ss_pred ccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCc
Q 000979 71 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 150 (1202)
Q Consensus 71 gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~ 150 (1202)
.|||||||||||||++++.|.|++|||||||||..+|++++.+|.+++ .+|||||++ ||+||+-+||.|+|+++|+
T Consensus 674 kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvA---HRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 674 KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVA---HRLSTIVNADLILVISNGR 749 (790)
T ss_pred ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEe---eeehheecccEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999987 489999999 9999999999999999999
Q ss_pred EEEEcCcchHHH
Q 000979 151 IVYQGPRELVLE 162 (1202)
Q Consensus 151 vvy~G~~~el~~ 162 (1202)
++|.|.|+||+.
T Consensus 750 IvErG~HeeLl~ 761 (790)
T KOG0056|consen 750 IVERGRHEELLK 761 (790)
T ss_pred EeecCcHHHHHh
Confidence 999999999985
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=1.2e-22 Score=265.32 Aligned_cols=125 Identities=23% Similarity=0.322 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEE
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFM 779 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~illl 779 (1202)
.|||.|.+.|... . .+-.+.-+.++.+||.-+. .|.+ ...|||||.||+-+|..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~------~---~~i~~~L~~L~~vGLgYl~---LGq~-~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L---KKIQKPLQALIDNGLGYLP---LGQN-LSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc------c---HHHHHHHHHHHHcCCCeee---CCCc-CCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4678887777531 0 1122345678888886542 2333 356999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 842 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~ 842 (1202)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.++=|- +||++++.|+|+
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 999999999999999999999999999999999996 5788899999995 578999999985
No 388
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.5e-25 Score=235.18 Aligned_cols=143 Identities=23% Similarity=0.284 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCCCC-----------CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhh
Q 000979 13 ELARREKAAGIKPDP-----------DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 81 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvs 81 (1202)
+|.+.|+..|.-.|| ++..-.+...+++++++++|.++|+..||++.+|.+= .+|||||||||+
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVa 151 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVA 151 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHH
Confidence 566667777766653 5556667778889999999999999999999999885 589999999999
Q ss_pred HHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 82 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 82 IAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
|||||..+|+||++||||||||+.+..+|.+.|+++-++.|.||++.+||.- -+=+.+||+.||++|+++|+|+..++-
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999998888888887766542 445567999999999999999988774
No 389
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=5.3e-24 Score=235.29 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=129.7
Q ss_pred ceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCC----------------CCCc----eEEE--EEEEcCcc----
Q 000979 628 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----------------KTGG----YITG--NITISGYP---- 681 (1202)
Q Consensus 628 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~----------------~~~~----~~~G--~i~~~g~~---- 681 (1202)
++.++++++ |++++|+||||||||||+++|++. ...+ ...+ ++.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 345777876 789999999999999999999832 1111 0112 44555532
Q ss_pred C--CcccccceEEEeecCCCCCC-CCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 682 K--KQETFARISGYCEQNDIHSP-FVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 682 ~--~~~~~~~~~~~v~q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
. .....++.+++++|+..+++ ..|..|...+............. ... .++.+.+++.+..+.. .+.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----ccccC
Confidence 1 11234667899999877776 46777766655544322110000 001 1233334444333333 35799
Q ss_pred HHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 758 TEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ +.|+|+++|++ ++.+.+|++++|.-
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 999999999999974 5899999999999999999999999999865 78888888885 57899999999963
No 390
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.91 E-value=8.2e-25 Score=268.40 Aligned_cols=106 Identities=31% Similarity=0.394 Sum_probs=100.9
Q ss_pred HHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecC
Q 000979 52 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 131 (1202)
Q Consensus 52 ~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQ 131 (1202)
.+..|+.++||.|| |+|.+||||||||++|||||+++|+||+||||||+||+.||..|.+.|+++. .++|+|+||
T Consensus 591 fI~~lP~gy~t~v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~Ia--- 665 (709)
T COG2274 591 FIENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIA--- 665 (709)
T ss_pred HHHhcccccccccc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEE---
Confidence 46789999999999 8889999999999999999999999999999999999999999999999976 478889999
Q ss_pred CChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 132 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 132 p~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||+++++.+|+|+||++|+++++|||+|+++
T Consensus 666 HRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 666 HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999996
No 391
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.91 E-value=4.4e-24 Score=227.65 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=124.6
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHh----CCCCCceEEEEEEEcCccCCcccccceEEEeecCC-----CCCCCCC
Q 000979 635 VSGAFRPGVLTALMGVSGAGKTTLMDVLA----GRKTGGYITGNITISGYPKKQETFARISGYCEQND-----IHSPFVT 705 (1202)
Q Consensus 635 vs~~i~~Ge~~al~G~sGaGKSTLl~~l~----g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~lT 705 (1202)
.++++.+| +++|+||||||||||+++|. |...++ .|.+..+.........+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34566777 99999999999999999995 765432 344331111122233456789999987 3334458
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH------HHHHHHHhhCCCEEEE
Q 000979 706 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR------LTIAVELVANPSIIFM 779 (1202)
Q Consensus 706 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqR------v~ia~aL~~~p~illl 779 (1202)
+.||+.+. ..++ +++.+ +.. ++.||+||||| ++||++|+.+|+++++
T Consensus 93 ~~~~~~~~---------~~~~----~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQGE----SNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------chHH----HHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88887552 1111 22232 222 35799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 780 DEPTSGLDARAAA-IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 780 DEPtsgLD~~~~~-~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||||++||+..+. .+.+.|++++++ |.|+|++||++. ..+.+|+++.|.++|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 9999999999999 999999998766 899999999964 5678999999987764
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=2.5e-25 Score=238.31 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=132.1
Q ss_pred CceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000979 627 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 706 (1202)
Q Consensus 627 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 706 (1202)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+... ..++.+++++|+...++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRASK-MRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHHH-hhhhhHHHHhcCCCCCCCCce
Confidence 34568999987 8999999999999999999961 12322111 112457888888888888888
Q ss_pred HHHHHHHHHccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh----CCC
Q 000979 707 YESLLFSAWLRLS-----PEVDSETRKM--FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----NPS 775 (1202)
Q Consensus 707 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~----~p~ 775 (1202)
+|.+.+....... .....+.... ..+++++.+++.+..++.+ ..||+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8876654432100 0011110000 1245666777776666653 4699999999999999974 479
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
+++|||||+|||+.++..+.+.|++++ ++.|+|++||++ ++.+.||++++|...
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~~ 205 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYKT 205 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEec
Confidence 999999999999999999999999985 467899999985 578999999999853
No 393
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=6.5e-24 Score=214.57 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCCCCC-----------CH-HHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000979 13 ELARREKAAGIKPDP-----------DI-DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 80 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRv 80 (1202)
++.+.|+..|...|+ |+ ..-+....++++|+++...++|+..||.+.+|.+= .+|||||||||
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRV 145 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRV 145 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHH
Confidence 666777777766662 22 13344567777888888899999999999999985 58999999999
Q ss_pred hHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 81 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 81 sIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
||||||.-+|+|+++||||||||++...+|.+.++++|. .|.|.+|.+|.-. =.-+-+|||+.|++|+++++|++++.
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999986 6778888777433 55677899999999999999988876
Q ss_pred H
Q 000979 161 L 161 (1202)
Q Consensus 161 ~ 161 (1202)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.2e-23 Score=228.78 Aligned_cols=203 Identities=21% Similarity=0.244 Sum_probs=150.0
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
+..+++.+|+|.|+- +.-+++.+++..++.-+-.+++|+||+||||+++++.|... +.+|.+-+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 345788899888752 11157889999999999999999999999999999998655 3456554432
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
|..++|-.|...-+-.+.|-+ +.+....+ ++...++ +++-+..+||..-.-. ..+.+|||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~----~si~~LSGGQ 487 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTEEE----IRRHLGSFGLSGELAL----QSIASLSGGQ 487 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCHHH----HHHHHHhcCCCchhhh----ccccccCCcc
Confidence 456789888755443444433 23333332 2223332 5677888999753211 1246799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
|-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.+ +-.||+++|+.+ -+-..|+.+.+..+ |++. +.|
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ieg 562 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTPIEG 562 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEeeec
Confidence 99999999999999999999999999999999999999876 347999999975 46778999999985 5655 444
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
No 395
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-24 Score=244.48 Aligned_cols=105 Identities=28% Similarity=0.373 Sum_probs=96.9
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
...|+++++|.|| |+|.-||||||||||+|||+++||+|++||||||+||+.+|.++++.+++.. .++|.|.|+ |
T Consensus 470 i~~l~~GY~T~VG-erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~Iv---H 544 (591)
T KOG0057|consen 470 ISRLPDGYQTLVG-ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIV---H 544 (591)
T ss_pred HHhccccchhhHh-hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEE---e
Confidence 5678999999999 7788899999999999999999999999999999999999999999999844 355666677 8
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++++.+.||+|++|++|++.+.|+|+|++.
T Consensus 545 ~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 545 RLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 899999999999999999999999999997
No 396
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=6e-23 Score=222.11 Aligned_cols=207 Identities=22% Similarity=0.258 Sum_probs=160.6
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++++||.|+|+... -=+..||++|++||++-|+|.|||||||++++|+|... |.+|+|.+||.|
T Consensus 321 ~~lelrnvrfay~~~~------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCcc
Confidence 4689999999996321 12788999999999999999999999999999999877 558999999999
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000979 682 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 758 (1202)
Q Consensus 682 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 758 (1202)
++. +++|+..+-|+-|..+|+.+ + .++.... .+.++..++.+.+.+...-..|.-..-.||.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~l-----------l-~~e~~as---~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt 451 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQL-----------L-GPEGKAS---PQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhh-----------h-CCccCCC---hHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence 865 34666666666665555422 1 1112111 2336778888877765443333322345999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 759 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 759 GqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
|||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+- .++++|+||+.+|||-. -|..+||++.+.+ |+++.
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e 528 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 528 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceee
Confidence 99999999999999999999999999999999999987765 45677999999999954 6899999999985 78887
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
.-+
T Consensus 529 ~tg 531 (546)
T COG4615 529 LTG 531 (546)
T ss_pred ccc
Confidence 654
No 397
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=1.9e-23 Score=225.26 Aligned_cols=180 Identities=17% Similarity=0.089 Sum_probs=121.4
Q ss_pred ecceEEEe-CCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC--ccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000979 633 NGVSGAFR-PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFARISGYCEQNDIHSPFVTIYES 709 (1202)
Q Consensus 633 ~~vs~~i~-~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 709 (1202)
++++|... +|++++|+||||||||||+++|++... |+..+....+. ...........+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45566543 589999999999999999999986332 12222222211 11111233456888988763311 11111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh----------CCCEEEE
Q 000979 710 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA----------NPSIIFM 779 (1202)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~----------~p~illl 779 (1202)
. ..+.++..+.+ .++..++.+..+.. ++.||||||||++||++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 0 22222211111 12333343333433 35799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
||||+|||+.+...+.+.|++++++|+|+|++||+++ .+...+|+++++.+||
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999777999999999986 4677889999998765
No 398
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.90 E-value=2.7e-23 Score=244.28 Aligned_cols=199 Identities=25% Similarity=0.348 Sum_probs=156.7
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...++++|++..-| ++...|++.++.++|||-+.|.||||||||||+|+|+|.=+.+ +|+|..-
T Consensus 390 ~~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P-- 453 (604)
T COG4178 390 DHGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP-- 453 (604)
T ss_pred cceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--
Confidence 46789999887643 3347899999999999999999999999999999999987655 4666432
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-CCCCCCCHH
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL-PGVSGLSTE 759 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~LSgG 759 (1202)
....+-|+||.|.+.. -|.||-+.|.... ...++ +.+.+++..+||.+..++..+. +-.+.||+|
T Consensus 454 ------~~~~~lflpQ~PY~p~-GtLre~l~YP~~~---~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 454 ------ADSALLFLPQRPYLPQ-GTLREALCYPNAA---PDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred ------CCCceEEecCCCCCCC-ccHHHHHhCCCCC---CCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 1123679999988754 5999999885321 12333 3367899999999887766432 123469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecC
Q 000979 760 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 832 (1202)
Q Consensus 760 qrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 832 (1202)
|||||++||.|+++|++++|||.||+||+.++..+.+.+++-. .+.|||-+.|++. +..+.++.+-+.++
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~~ 589 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLDD 589 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999998632 4899999999975 45666776666543
No 399
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=8.2e-24 Score=234.27 Aligned_cols=179 Identities=15% Similarity=0.236 Sum_probs=131.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc-cC-Cc----ccccceEEEeecCC---------CCCCCCCH
Q 000979 642 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY-PK-KQ----ETFARISGYCEQND---------IHSPFVTI 706 (1202)
Q Consensus 642 Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~-~~-~~----~~~~~~~~~v~q~~---------~~~~~lTv 706 (1202)
..+++|+||||||||||+++|++...+. ..|.+...|. +. .. ......+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4599999999999999999999865321 1345666554 21 10 11234788999985 34567899
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCc--------------------cccccccCCCCCCCCHHHHHHHHH
Q 000979 707 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--------------------LRQSLVGLPGVSGLSTEQRKRLTI 766 (1202)
Q Consensus 707 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--------------------~~~~~~~~~~~~~LSgGqrqRv~i 766 (1202)
.+++......+.... ..+...+.+.++++.+++.. ..+. .+..||||||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHHH
Confidence 988865432111000 11122356788999999851 1122 245799999999999
Q ss_pred HHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe
Q 000979 767 AVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 830 (1202)
Q Consensus 767 a~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 830 (1202)
|++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.|+|++||++ ++.+.+|+++-+.
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99998 5789999999999999999999999999985 589999999994 6788999998876
No 400
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.3e-21 Score=226.65 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 779 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~illl 779 (1202)
.|||.|...|.... +. -.+.-+.|..+||.-. ..|.| ...|||||.|||-+|.+|..+. .+.+|
T Consensus 783 ~MTveEA~~FF~~~------p~---I~rkLqtL~dVGLgYi---~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------PK---IARKLQTLVDVGLGYI---KLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------hH---HHHHHHHHHHcCcceE---ecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 46888888876421 11 1223456667787532 23433 3469999999999999999987 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEe-----cCCEEEEEcCCCc
Q 000979 780 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLGR 843 (1202)
Q Consensus 780 DEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gG~~~~~G~~~~ 843 (1202)
||||+||-....+.+++.|.+|.++|.|||++.|++ ++...+|.|+=|- +||+++..|+|++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPee 916 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEE 916 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHH
Confidence 999999999999999999999999999999999997 4789999999883 5789999999854
No 401
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=2.2e-23 Score=258.53 Aligned_cols=105 Identities=30% Similarity=0.431 Sum_probs=98.1
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
+..|+++.||.|| ++|..||||||||+|||||+++||+||+||||||+||+.+|..++++++++. +++||++|| |
T Consensus 448 I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIa---H 522 (567)
T COG1132 448 IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIA---H 522 (567)
T ss_pred HHhCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEe---c
Confidence 4466889999999 7788899999999999999999999999999999999999999999999765 466888888 9
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+++++.+|+|+||++|+++|.|+|+||+.
T Consensus 523 Rlsti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 523 RLSTIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999986
No 402
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=1.6e-22 Score=227.05 Aligned_cols=120 Identities=30% Similarity=0.424 Sum_probs=107.7
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||.+.++..+ +++|||||||++||.||+++|++|||||||||||+.++.++++.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 456778999999999999666666 589999999999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHHHHHh
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFAS 166 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F~~ 166 (1202)
+++||++++|++. ++.+.||+|++|++|+++++|+.+++...+..
T Consensus 186 g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 186 GGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 6689999988665 88888999999999999999999998876543
No 403
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.2e-22 Score=197.47 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=115.4
Q ss_pred CCHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHH
Q 000979 27 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 106 (1202)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~s 106 (1202)
+++..+.+.-.+...+.+++++++.+.|+|.+|.|+.+| ++|-|+||||+|||||+.+|+|++|||||||||-.+
T Consensus 94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~ 168 (245)
T COG4555 94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168 (245)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHH
Confidence 344566666677888999999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 107 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 107 a~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
...+.+.+++.- ..+++||.+.| -..++-.++|+++||.+|++|+.|+.+++.+
T Consensus 169 ~r~~~dfi~q~k-~egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 169 RRKFHDFIKQLK-NEGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHHHHhh-cCCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999998854 46888888855 6778888999999999999999999988864
No 404
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=2.8e-22 Score=250.18 Aligned_cols=103 Identities=26% Similarity=0.384 Sum_probs=93.7
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|+++.||.|| +++..|||||||||+|||||+++|+||+||||||+||+.+|..+.++|++.. +++|+|+|| |++
T Consensus 470 ~lp~G~dT~vg-e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiIt---Hrl 544 (588)
T PRK11174 470 LLPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVT---HQL 544 (588)
T ss_pred hcccccccccc-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cCh
Confidence 46679999999 6678899999999999999999999999999999999999999999998864 356666777 777
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++++.||+|++|++|+++++|+|+|+++
T Consensus 545 ~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999985
No 405
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.8e-22 Score=227.11 Aligned_cols=114 Identities=31% Similarity=0.388 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhCC------cccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGL------DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 44 ~~~v~~il~~lgL------~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
++.+.++++.-|| +++.||.|| ++|++|||||+|||++||||+++++++++||||++||.+||..|.+.|.++
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 3445556665555 557899999 778999999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++ ++|++++| ||+...+.+|+|+||++|+++++|+|+++.+
T Consensus 503 ~~-~ktvl~it---Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 503 AK-QKTVLVIT---HRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred Hh-CCeEEEEE---cChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 74 67888888 9999999999999999999999999999974
No 406
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2.9e-21 Score=191.88 Aligned_cols=225 Identities=16% Similarity=0.203 Sum_probs=164.2
Q ss_pred EEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc-e-EEEEEEEcCccC
Q 000979 605 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y-ITGNITISGYPK 682 (1202)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~-~-~~G~i~~~g~~~ 682 (1202)
..+|++....++ .+..+++++||+++..||+-+++|.||||||-..|+|+|..+.. . ......+++.+.
T Consensus 5 DIrnL~IE~~Ts---------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idL 75 (330)
T COG4170 5 DIRNLTIEFKTS---------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDL 75 (330)
T ss_pred cccceEEEEecC---------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchh
Confidence 345666555432 46677999999999999999999999999999999999954321 1 122334444332
Q ss_pred ---Cccccc----ceEEEeecCCC--CCCCCCHHHHHHHHHHccCCC-CCC--HHHHHHHHHHHHHHcCCCccccccccC
Q 000979 683 ---KQETFA----RISGYCEQNDI--HSPFVTIYESLLFSAWLRLSP-EVD--SETRKMFIDEVMELVELNPLRQSLVGL 750 (1202)
Q Consensus 683 ---~~~~~~----~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~ 750 (1202)
..+..| +.+++++|++. +.|.-+|...|.-..-...-+ ... -.=++++.-+++..+|+.+..|-....
T Consensus 76 L~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SY 155 (330)
T COG4170 76 LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSY 155 (330)
T ss_pred hcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhC
Confidence 122223 35678999974 445444444332111000000 000 011345567899999999988877665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhcceEEEE
Q 000979 751 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLM 829 (1202)
Q Consensus 751 ~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 829 (1202)
| .+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||++++||.. .+-+-||++-+|
T Consensus 156 P--~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~Vl 232 (330)
T COG4170 156 P--YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVL 232 (330)
T ss_pred c--chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEE
Confidence 5 47999999999999999999999999999999999999999999999864 4899999999987 588999999999
Q ss_pred ecCCEEEEEcCCC
Q 000979 830 KRGGQEIYVGPLG 842 (1202)
Q Consensus 830 ~~gG~~~~~G~~~ 842 (1202)
.- |+.+..+|.+
T Consensus 233 YC-GQ~~ESa~~e 244 (330)
T COG4170 233 YC-GQTVESAPSE 244 (330)
T ss_pred Ee-cccccccchh
Confidence 86 7888888764
No 407
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=5.6e-21 Score=215.71 Aligned_cols=213 Identities=18% Similarity=0.210 Sum_probs=137.5
Q ss_pred CceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCc
Q 000979 601 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 680 (1202)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 680 (1202)
...+.++|++++++ ++.+++|++|++.+|+-++|+|||||||||+|++|+|+..|-+..=.++.-..
T Consensus 73 s~dvk~~sls~s~~-------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeeccC-------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 34577788877653 46789999999999999999999999999999999998665443333333332
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH-ccCC----------------CCCCHHHHHHHHHHHHHHcCC-Cc
Q 000979 681 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLS----------------PEVDSETRKMFIDEVMELVEL-NP 742 (1202)
Q Consensus 681 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~----------------~~~~~~~~~~~~~~~l~~l~l-~~ 742 (1202)
........ .+-++.+ +.-..+..+.+... +... ...+.+..+.++.+++..+|. .+
T Consensus 140 e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 140 EIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred cCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 22211110 0000100 00011111111100 0000 011112222334455555554 33
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Q 000979 743 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 822 (1202)
Q Consensus 743 ~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 822 (1202)
..++. ..++|||+|+|+++||+|..+|++|+|||||+|||..+...+-+.|.+.- .+ ++|+++|.-+ .+-..
T Consensus 214 m~~k~-----~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QD-fln~v 285 (614)
T KOG0927|consen 214 MQDKK-----VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQD-FLNGV 285 (614)
T ss_pred HHHHH-----hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchh-hhhhH
Confidence 44444 46799999999999999999999999999999999999999998887642 12 8999999754 57788
Q ss_pred cceEEEEecCCE-EEEEcCC
Q 000979 823 FDELFLMKRGGQ-EIYVGPL 841 (1202)
Q Consensus 823 ~d~v~~l~~gG~-~~~~G~~ 841 (1202)
|.+|+-|.+ ++ +.|.|+-
T Consensus 286 CT~Ii~l~~-kkl~~y~Gny 304 (614)
T KOG0927|consen 286 CTNIIHLDN-KKLIYYEGNY 304 (614)
T ss_pred hhhhheecc-cceeeecCCH
Confidence 999999986 56 4555664
No 408
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=1.1e-20 Score=194.72 Aligned_cols=138 Identities=25% Similarity=0.319 Sum_probs=121.5
Q ss_pred HhcCCCCC----CCHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc--cccccccCCcccccCccccchhhHHHHHhcCCeE
Q 000979 19 KAAGIKPD----PDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 92 (1202)
Q Consensus 19 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~--~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~I 92 (1202)
...|+-|+ +|+..-.+...+.+++.+++++++++.+||+. -+| ....+|||||+|||-|||||..+|+|
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHhcCCCe
Confidence 44567775 45556666778899999999999999999975 333 34579999999999999999999999
Q ss_pred eeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 93 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 93 LlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|++|||-||||+.++.++++.++++-++-++|||..+| --.|.++++|||+||++|+++.+|++++++.
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999988778889888766 8889999999999999999999999999984
No 409
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.5e-20 Score=199.40 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=116.8
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCc---eEEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000979 632 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 708 (1202)
Q Consensus 632 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 708 (1202)
++++++.+.+| +.+|+||||||||||+.+|.....+. ...|.. +... +........+.+++|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~-~~~~-i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSS-LKDL-IKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccccccc-HHHH-hhCCCCeEEEEEEEEcCCccC------
Confidence 56778888887 88999999999999999997321110 001110 0000 011112345677777655443
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCC
Q 000979 709 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTS 784 (1202)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL----~~~p~illlDEPts 784 (1202)
| .... ..++.++++++. .+..++. ++.||+|||||++||++| +.+|++++|||||+
T Consensus 83 ~-----------~~~~-~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 N-----------PLCV-LSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred C-----------cCCH-HHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 1 0111 123446666665 4444444 357999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC---CCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 785 GLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 785 gLD~~~~~~v~~~l~~~~~~---g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
|||+.++..+.+.|+++.++ +.|||+++|+++ ++.+ +|+|-+|..
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~ 190 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRM 190 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEe
Confidence 99999999999999987643 368999999987 4544 599999975
No 410
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.84 E-value=4.2e-21 Score=243.74 Aligned_cols=142 Identities=23% Similarity=0.339 Sum_probs=110.9
Q ss_pred HHHHhcCCCCCCCHH--HHHHH-hhhhhh-hhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHH
Q 000979 16 RREKAAGIKPDPDID--VYMKA-IATEGQ-EANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGE 84 (1202)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAr 84 (1202)
..|+..+.+||.... .+.++ +...+. -.++.+.+.++..| |++..||.|| +++..||||||||++|||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~-e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIG-ERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceec-CCCCCCCHHHHHHHHHHH
Confidence 345667777764332 22222 322221 12333444555444 5678999999 667889999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||+++|+||+||||||+||+.++..+.+.|++.. .++|+|++| ||+++.+.+|+|++|++|+++++|+|+|+++
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiIt---Hrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVT---HRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEe---cCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999998865 356777777 7889999999999999999999999999985
No 411
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.84 E-value=4e-21 Score=243.58 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=96.7
Q ss_pred HHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 46 ITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 46 ~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.++..| |+++.||.|| +++..|||||||||+|||||+++|+||+||||||+||+.+|.++.+.|++.
T Consensus 557 ~i~~al~~a~l~~~i~~lp~G~dt~ig-e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~- 634 (686)
T TIGR03797 557 EAWEAARMAGLAEDIRAMPMGMHTVIS-EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL- 634 (686)
T ss_pred HHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence 3445555554 5668899999 667889999999999999999999999999999999999999999999875
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.|+|++| ||+++++.+|+|+||++|+++++|+|+++++
T Consensus 635 --~~T~IiIt---Hr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 635 --KVTRIVIA---HRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred --CCeEEEEe---cChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 45667777 7889999999999999999999999999985
No 412
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.84 E-value=4.3e-21 Score=244.47 Aligned_cols=142 Identities=19% Similarity=0.174 Sum_probs=110.2
Q ss_pred HHHHHHhcCCCCCCCHH--HHHHH-hhhhh-hhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhH
Q 000979 14 LARREKAAGIKPDPDID--VYMKA-IATEG-QEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTT 82 (1202)
Q Consensus 14 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsI 82 (1202)
....|+..+..||.... .+.++ +.... +..++.+.+.++..| |+++.||.|| ++|..|||||||||+|
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~-e~G~~LSGGQrQRiaL 626 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA-EGGANLSGGQRQRLEI 626 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceec-cCCCCCCHHHHHHHHH
Confidence 33456777877774332 22221 22211 112333444555544 5668999999 6678999999999999
Q ss_pred HHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 83 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 83 AraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||||+++|+||+||||||+||+.+|.++.+.|++ .++|+|++| ||+++++.+|+|++|++|+++++|+|+|+++
T Consensus 627 ARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~Iiit---Hrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVA---HRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEe---cCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999976 356777777 8889999999999999999999999999985
No 413
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=6.2e-21 Score=238.20 Aligned_cols=142 Identities=21% Similarity=0.190 Sum_probs=111.9
Q ss_pred HHHHhcCCCCCCCH--HHHHH-HhhhhhhhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHH
Q 000979 16 RREKAAGIKPDPDI--DVYMK-AIATEGQEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEM 85 (1202)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAra 85 (1202)
..++..+..||+.. +.+.+ .++..+...++.+++.++..| |++..||.|| +.+..||||||||++||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~-e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG-EQGNNLSVGQKQLLALARV 490 (592)
T ss_pred HHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHH
Confidence 34566676776422 12222 233222223445677777777 5568899999 5678899999999999999
Q ss_pred HhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 86 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 86 Lv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+++|+||+||||||+||+.++..+.+.|++.. .++|+|++| ||+++.+.+|+|++|++|++++.|+|+|+++
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivt---Hr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIA---HRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999865 356666777 7779999999999999999999999999984
No 414
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=7.3e-21 Score=235.61 Aligned_cols=141 Identities=23% Similarity=0.340 Sum_probs=110.3
Q ss_pred HHHhcCCCCCCCHH--HHHH-Hhhhhh-hhhhHHHHHHHHHhCCc------ccccccccCCcccccCccccchhhHHHHH
Q 000979 17 REKAAGIKPDPDID--VYMK-AIATEG-QEANVITDYYLKVLGLD------VCADTMVGDEMIRGISGGQKKRVTTGEMM 86 (1202)
Q Consensus 17 ~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~v~~il~~lgL~------~~~dT~VG~~~~~gLSGGQKqRvsIAraL 86 (1202)
.++..+..||+... .+.+ .+.... +..++.+++.++..||. ++.||.|| ++++.||||||||++|||||
T Consensus 412 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vg-e~g~~LSgGqrqRialARal 490 (574)
T PRK11160 412 LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLG-EGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhc-CCCCCCCHHHHHHHHHHHHH
Confidence 45556666664322 1111 222211 22344567778888774 57899999 66788999999999999999
Q ss_pred hcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 87 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 87 v~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++|+||+||||||+||+.++..+.+.|++.. +++|+|++| |++++.+.+|+|++|++|++++.|+|+|+++
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiit---Hr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMIT---HRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEe---cChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999864 345555666 6668899999999999999999999999985
No 415
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.83 E-value=4.8e-20 Score=209.68 Aligned_cols=207 Identities=23% Similarity=0.280 Sum_probs=156.1
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
.-+++++|+..-|. .+..+++|+|++|+.|+-+.|+||||||||+|+|+|+|.-+ ..+|.+.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccC
Confidence 56899999887542 14568899999999999999999999999999999999754 235666533221
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC------CCCC
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------GVSG 755 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~------~~~~ 755 (1202)
. -+.+-|+||.|... .-|.||.+.|...--.+.. +...++++.+.++.++|.|..++.-|.. ....
T Consensus 499 ~-----~~~lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~--~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 G-----PKDLFFLPQRPYMT-LGTLRDQVIYPLKAEDMDS--KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred C-----CCceEEecCCCCcc-ccchhheeeccCccccccc--cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 1 13478999988653 4599999988632111111 1112234678888888888766654432 1245
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCE
Q 000979 756 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 834 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~ 834 (1202)
||+||+||++.||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.+|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDGRGS 644 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecCCCc
Confidence 999999999999999999999999999999999999999988865 4999999999976 4555588888874443
No 416
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=9.8e-21 Score=203.23 Aligned_cols=127 Identities=21% Similarity=0.308 Sum_probs=110.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHH
Q 000979 30 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 109 (1202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~ 109 (1202)
..-........++.+++++++++..||.+.+|... ..||||||||||||.+|+.+|+||+|||||||||+.+..+
T Consensus 102 afg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 102 AFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred hhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 34455567777889999999999999999988876 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 110 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 110 vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++.++++...++.|+|+.+| ....+...+|++++|++|+++++|++.++.+
T Consensus 177 l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999988765677777655 4446667799999999999999999877654
No 417
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.83 E-value=8.2e-21 Score=216.99 Aligned_cols=117 Identities=23% Similarity=0.305 Sum_probs=103.2
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.+++++++++.+||.+..|... ++|||||||||+|||||+.+|+||+|||||||||+.++..+++.|+++.
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~ 187 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34455667889999999999888776 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.+.|||+++|+. ..+.+.+|+|++|++|++++.|+++++.
T Consensus 188 ~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 188 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65578888877754 4666889999999999999999998875
No 418
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.83 E-value=7.6e-21 Score=241.94 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=109.0
Q ss_pred HHHHhcCCCCCCCHH--HHHHH-hhhh--hhhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHH
Q 000979 16 RREKAAGIKPDPDID--VYMKA-IATE--GQEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTG 83 (1202)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~~~-~~~~--~~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIA 83 (1202)
..|+..+..||.... .+.++ +..- ....++.+.+.++..| |+++.||.|| +++..|||||||||+||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~-e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS-EEGSSISGGQKQRIALA 623 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec-CCCCCCCHHHHHHHHHH
Confidence 345666777764332 22222 2221 1112233445555444 5678999999 56788999999999999
Q ss_pred HHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 84 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 84 raLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||++++|+||+||||||+||+.++..+++.|++. +++|+|++| ||+++.+.+|+|++|++|++++.|+|+++++
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~Iiit---Hr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVA---HRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEe---cchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999874 355666777 7888999999999999999999999999985
No 419
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=235.52 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=110.2
Q ss_pred HHHhcCCCCCCCH--HHHHHH-hhhh--hhhhhHHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHH
Q 000979 17 REKAAGIKPDPDI--DVYMKA-IATE--GQEANVITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGE 84 (1202)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~~-~~~~--~~~~~~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAr 84 (1202)
.++..+..||+.. +.+.++ +... +...++.+++.++..| |++..||.|| +.++.||||||||++|||
T Consensus 415 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig-~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 415 LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG-ENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC-CCCCcCCHHHHHHHHHHH
Confidence 3455666776432 222222 3321 1123344555666655 6778899999 567889999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
||+++|+||+|||||||||+.++..+.+.|++.. .++|.|++| |++++.+.||+|++|++|+++++|+|+++++
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~Vt---Hr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA---HRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---cchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998864 355666677 7779999999999999999999999999985
No 420
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=1.2e-20 Score=202.06 Aligned_cols=115 Identities=32% Similarity=0.430 Sum_probs=106.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.|+..|+.+|+.+-++-.+. .||||||||+-|||||+.+|+||+||||||.||-....+|++.+++++++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 4445578999999999999999885 69999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.|||+++|-+. -..+.+|++++|.+|+++.+|+++|++
T Consensus 188 ~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 188 KGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 8999999988665 688999999999999999999998876
No 421
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.83 E-value=9.9e-21 Score=239.71 Aligned_cols=111 Identities=25% Similarity=0.317 Sum_probs=94.1
Q ss_pred HHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 45 VITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 45 ~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
+.+.+.++..| |++..||.+| +++.+||||||||++|||||+++|+||+||||||+||+.++..+.+ ...
T Consensus 585 e~i~~al~~a~l~~~i~~lp~GldT~ig-e~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~- 661 (711)
T TIGR00958 585 EEIMAAAKAANAHDFIMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS- 661 (711)
T ss_pred HHHHHHHHHcCCHHHHHhCCCccCCccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc-
Confidence 34555666555 5668999999 6678899999999999999999999999999999999999988888 322
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+++|.|+|| ||.++.+.+|+|++|++|+++++|+|+|+++
T Consensus 662 -~~~~TvIiIt---Hrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 662 -RASRTVLLIA---HRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -cCCCeEEEEe---ccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 2345566667 7778999999999999999999999999985
No 422
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.4e-20 Score=207.58 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc-------C-Cc--ccccceEEEeecCCCCC-CCCCHHHHHHH
Q 000979 644 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------K-KQ--ETFARISGYCEQNDIHS-PFVTIYESLLF 712 (1202)
Q Consensus 644 ~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~-------~-~~--~~~~~~~~~v~q~~~~~-~~lTv~e~l~~ 712 (1202)
+++|+|||||||||||++|++...+ ..|.+..++.. . .. ....-.+.|..|++... -..++++...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~- 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS- 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce-
Confidence 9999999999999999999985431 12333322210 0 00 01111233443432210 0011111100
Q ss_pred HHHccCCC-CCCHHHHHHHHHHHHHHcCCCcccccc----------cc-C------CCCCCCCHHHHHHHHHHHHHhhC-
Q 000979 713 SAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSL----------VG-L------PGVSGLSTEQRKRLTIAVELVAN- 773 (1202)
Q Consensus 713 ~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~----------~~-~------~~~~~LSgGqrqRv~ia~aL~~~- 773 (1202)
..+.+. ..+ ++.++++++.+|+....... .. . ..+..||||||||++||++++.+
T Consensus 101 --~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 --SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred --EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 011111 111 22356888888885321110 00 0 11357999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCC
Q 000979 774 ---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 833 (1202)
Q Consensus 774 ---p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG 833 (1202)
|++++|||||+|||+..+..+.+.|++++++|.++|++||++ ++.+.+|++++|.+.+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 899999999999999999999999999977799999999995 5678999999998764
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.8e-20 Score=202.47 Aligned_cols=201 Identities=19% Similarity=0.292 Sum_probs=152.9
Q ss_pred CCceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcC
Q 000979 600 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 679 (1202)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 679 (1202)
.|..+-++||+|.|+ +.++++++++|-|.--.-+||+||||.||||||++|.|...+ ..|+..-
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK-- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK-- 646 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc--
Confidence 445577888888875 456789999999999999999999999999999999998773 3565432
Q ss_pred ccCCcccccceEEEeecCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000979 680 YPKKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 757 (1202)
Q Consensus 680 ~~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 757 (1202)
..+-.+|+..|.. .+-..-|..|.|.-.. ..+.+ .....+-.+||...++++- +..||
T Consensus 647 ------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 647 ------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred ------cceeeeechhhhhHHhhccccCHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceEe----eeecC
Confidence 2344678887763 2333456666654221 11222 1346778899998888873 56899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEE
Q 000979 758 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 837 (1202)
Q Consensus 758 gGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~ 837 (1202)
||||-||++|.--+..|+||+|||||++||.++...+-+.|++. .-.||+++||-+. +.+--+.+.++.+.|---.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999875 3479999999774 5566677888876654334
Q ss_pred EcC
Q 000979 838 VGP 840 (1202)
Q Consensus 838 ~G~ 840 (1202)
.|+
T Consensus 783 dGd 785 (807)
T KOG0066|consen 783 DGD 785 (807)
T ss_pred ccc
Confidence 454
No 424
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.9e-20 Score=192.19 Aligned_cols=116 Identities=24% Similarity=0.316 Sum_probs=105.1
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.+...=..|+.+|+.+.+-+..+ .|||||+|||+|||||+.+|+|++-||||++||+.++.+||+.|+++..+
T Consensus 122 k~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 122 KEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE 196 (258)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH
Confidence 3444444558999999999999986 79999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.|.|+|+.+||-- -.-+.||||+=|.+|++||.||.+|+-+
T Consensus 197 ~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 197 DGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred cCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9999999999654 5678999999999999999999998765
No 425
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.2e-20 Score=214.12 Aligned_cols=114 Identities=25% Similarity=0.361 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhCCc-------ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHH
Q 000979 44 NVITDYYLKVLGLD-------VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 116 (1202)
Q Consensus 44 ~~~v~~il~~lgL~-------~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~ 116 (1202)
++.+-++++..||+ +..||.+| ++|++||||||||++|||+|++|.++++|||||.|||+.+|.+|++.+.+
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 34455567766664 47889999 77899999999999999999999999999999999999999999999988
Q ss_pred HhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 117 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 117 ~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+. ++|-+++| |++.-.+.||+|+||++|+++++|+|.++++
T Consensus 520 ~~~-~kTll~vT---HrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 520 HAE-GKTLLMVT---HRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred Hhc-CCeEEEEe---cccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 663 44444455 6777889999999999999999999999985
No 426
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=1.4e-20 Score=213.63 Aligned_cols=116 Identities=26% Similarity=0.382 Sum_probs=104.6
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++.+++.+||.+.+|+.++ +||||||||++||+||+.+|++|+|||||+|||+.+...+++.+++++.
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 186 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 34455678899999999999999985 7999999999999999999999999999999999999999999999764
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|+.. ++.+.+|+|++|++|++++.|+.+++..
T Consensus 187 -~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 187 -RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred -CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5889999877555 8889999999999999999999999864
No 427
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.5e-20 Score=192.99 Aligned_cols=112 Identities=26% Similarity=0.299 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEE
Q 000979 46 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 125 (1202)
Q Consensus 46 ~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTi 125 (1202)
++.++++.+||++..-.. ...+|||||||||||||||+.+|++|+||||||+||+....+|++.|.++.+..+.|.
T Consensus 120 ~i~~~L~~VgL~~~~l~R----~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~ 195 (252)
T COG1124 120 RIAELLDQVGLPPSFLDR----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTY 195 (252)
T ss_pred HHHHHHHHcCCCHHHHhc----CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceE
Confidence 378899999999866553 3468999999999999999999999999999999999999999999999876555555
Q ss_pred EEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 126 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 126 IiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++. .|-..-+..++|||+||++|+++|.++..++.+
T Consensus 196 l~I-sHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 196 LFI-SHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred EEE-eCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 554 335556778899999999999999999999875
No 428
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=3e-19 Score=177.53 Aligned_cols=206 Identities=19% Similarity=0.319 Sum_probs=151.5
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..++..++.|+|+.. .+++-|+|++++.|.-+.++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~~------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEecccC------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 458889999998642 36899999999999999999999999999999999965422 3778888865
Q ss_pred CCc--------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000979 682 KKQ--------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 747 (1202)
Q Consensus 682 ~~~--------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 747 (1202)
.-. ..|.+..+.-- +-.+....++ |.+.|+.. ..+. +| -+++++.+++.-...
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~-----g~dp-~R---re~LI~iLDIdl~WR-- 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVG-----GDDP-ER---REKLIDILDIDLRWR-- 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccH-HHHHhhcc-----CCCh-hH---hhhhhhheeccceEE--
Confidence 311 11222222222 2222334555 44445421 2222 33 356777777643221
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhcceE
Q 000979 748 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 826 (1202)
Q Consensus 748 ~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 826 (1202)
.+.+|-||||||.|++.|++.=++|+|||-|--||..++..+++.+++-.++ |.||+..||-.+ -+..-..++
T Consensus 145 -----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl 218 (291)
T KOG2355|consen 145 -----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHL 218 (291)
T ss_pred -----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhE
Confidence 2469999999999999999999999999999999999999999999987754 899999999776 466778999
Q ss_pred EEEecCCEEEEEcCC
Q 000979 827 FLMKRGGQEIYVGPL 841 (1202)
Q Consensus 827 ~~l~~gG~~~~~G~~ 841 (1202)
+.++ +|+++-.-+.
T Consensus 219 ~yi~-~Gkl~~~l~~ 232 (291)
T KOG2355|consen 219 VYIK-SGKLVDNLKY 232 (291)
T ss_pred EEec-CCeeeecccc
Confidence 9998 5888775443
No 429
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=6.1e-20 Score=188.90 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=121.1
Q ss_pred HHHHHHHhcCCCCCC-----------CHHHHHHH-hhhhhhhhhHHHHHHHHHhCCccc-ccccccCCcccccCccccch
Q 000979 13 ELARREKAAGIKPDP-----------DIDVYMKA-IATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKR 79 (1202)
Q Consensus 13 ~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~v~~il~~lgL~~~-~dT~VG~~~~~gLSGGQKqR 79 (1202)
++-+.++..|++.|+ |+..-+++ ....+++.++++-.-|+..||... +|-+ ...||||.|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KR 153 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKR 153 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHH
Confidence 555667888988884 44454545 455667778888888999999986 4443 46899999999
Q ss_pred hhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcch
Q 000979 80 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREL 159 (1202)
Q Consensus 80 vsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~e 159 (1202)
+|+||||..||.|+|+||||||||+.++..+.+.++++.+.-+.|+++.+| .-.+++..+|++++|.+|+|+.+||.++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH-Dl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH-DLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC-ChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999999999887777778777656 6679999999999999999999999999
Q ss_pred HHH
Q 000979 160 VLE 162 (1202)
Q Consensus 160 l~~ 162 (1202)
+.+
T Consensus 233 l~~ 235 (263)
T COG1127 233 LLA 235 (263)
T ss_pred HHh
Confidence 974
No 430
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=3.4e-20 Score=194.66 Aligned_cols=108 Identities=26% Similarity=0.350 Sum_probs=93.0
Q ss_pred hhhhhhhhHHHHHHHHHhCCccccc-ccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHH
Q 000979 37 ATEGQEANVITDYYLKVLGLDVCAD-TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 115 (1202)
Q Consensus 37 ~~~~~~~~~~v~~il~~lgL~~~~d-T~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~ 115 (1202)
.....++++.++.+++.+||.+..+ ... .+|||||||||||||||+.+|+|++.||||.+||+.++..|++.++
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 3333356777889999999997777 665 4899999999999999999999999999999999999999999999
Q ss_pred HHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcE
Q 000979 116 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 151 (1202)
Q Consensus 116 ~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~v 151 (1202)
+++++.++|+|+.+| .+.+-..+||++.|.+|++
T Consensus 187 ~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 187 ELNKERGKTIIMVTH--DPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCee
Confidence 998877877776655 5567789999999999993
No 431
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=5.2e-20 Score=209.29 Aligned_cols=115 Identities=28% Similarity=0.394 Sum_probs=103.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||.+..|+.++ .||||||||++||+||+.+|++|+|||||+|||+.+...+++.++++++
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~- 172 (302)
T TIGR01188 99 DEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE- 172 (302)
T ss_pred HHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 3445668899999999999998875 7999999999999999999999999999999999999999999999764
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|++ .++.+.+|+|++|++|++++.|+++++.+
T Consensus 173 ~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 173 EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 578888887754 47888999999999999999999998875
No 432
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.81 E-value=7.8e-20 Score=178.90 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.|+.++...||..+.+-+=| +||||||||||+||.|+++-+||+||||-|+||+.-+.+....+.++..++
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 444558889999999998887754 799999999999999999999999999999999999999999999999889
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.|+++.+|||. +.-+.+|+++++++|+|+++|+.++...
T Consensus 180 ~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 180 KMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred CCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999887 8899999999999999999999888763
No 433
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.80 E-value=7.5e-21 Score=205.19 Aligned_cols=209 Identities=27% Similarity=0.514 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000979 929 IQFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 1007 (1202)
Q Consensus 929 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1007 (1202)
+|++.+++|+++..+|||... ..+++..++.++++|.+|.++++ +.++. ++.|.+++.+.+..+...........
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN---SQDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc---ccccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 89999999999999999999873 22233 56777777766666555555445567
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000979 1008 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1087 (1202)
Q Consensus 1008 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1202)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++++++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999877 67777777778888889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccCCcCCCCcchHhHHhHhhcHHHHHHHHHHHHHh
Q 000979 1088 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1143 (1202)
Q Consensus 1088 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef 1143 (1202)
+++...+..+.+++..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
No 434
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=9e-20 Score=210.34 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=105.3
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.++.++++++.+||.+..|..+ ++|||||||||+|||||+++|+||+|||||||||..+...+.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34556677899999999999888877 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|++ .++.+++|+|++|++|++++.|+++++.+
T Consensus 182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 65588888887755 57899999999999999999999988753
No 435
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=8.8e-20 Score=231.48 Aligned_cols=103 Identities=30% Similarity=0.399 Sum_probs=91.4
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.|| +.++.||||||||++|||||+++|+||+|||||||||+.++..+.+.|++.. .+.|.|++| |+.
T Consensus 578 ~lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it---H~~ 652 (694)
T TIGR01846 578 ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIA---HRL 652 (694)
T ss_pred hCcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEe---CCh
Confidence 35668999999 5678899999999999999999999999999999999999999999999864 344455555 666
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+++++
T Consensus 653 ~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 653 STVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 8899999999999999999999999985
No 436
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.80 E-value=1.1e-19 Score=209.27 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=105.8
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
+.+.++.++++++.+||++..|... ++|||||||||+|||||+++|++|+|||||||||..+..++.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4566778999999999999888776 47999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++|.+. ++..++|+|++|++|+++++|+++++.+
T Consensus 183 ~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 183 RLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 66888888878664 8899999999999999999999988864
No 437
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.80 E-value=1.2e-19 Score=209.29 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=104.7
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+++.++.++++++.+||++..|..++ +|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 345566778999999999998888874 799999999999999999999999999999999999999999999987
Q ss_pred HhC-CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HIN-SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~-~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++. ++|+|+++|.+ .++.+++|+|++|++|+++++|+++++.+
T Consensus 185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 654 67888877754 47899999999999999999999998853
No 438
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1e-19 Score=204.42 Aligned_cols=199 Identities=24% Similarity=0.280 Sum_probs=133.2
Q ss_pred ceeEEeeeEEEEecCchhhhcccccCceEEeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 000979 602 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 681 (1202)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 681 (1202)
..+..++.+.+| +.+.+|++-++++..|.-++|+|+||+|||||||+|+. |.| ++.+
T Consensus 79 ~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~ 135 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFH 135 (582)
T ss_pred cceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccC
Confidence 346666666665 45678999999999999999999999999999999985 121 1222
Q ss_pred CCcccccceEEEeecCCCCCCCCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000979 682 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE-TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 760 (1202)
Q Consensus 682 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 760 (1202)
..+. .+ ..+++-.......-|.++.+...- +..... ++++..+++|..+|..+-.... ..+.||||-
T Consensus 136 veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGW 203 (582)
T KOG0062|consen 136 VEQE-VR--GDDTEALQSVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGW 203 (582)
T ss_pred chhh-ee--ccchHHHhhhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcch
Confidence 2110 11 012222111112223333332210 001111 2333344588888887533222 246799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEE-EEc
Q 000979 761 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 839 (1202)
Q Consensus 761 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~-~~G 839 (1202)
|-|+++||||..+|+||||||||+.||..+...+-+.|+.+ +.|+|+++||-+ .+-+.|..|+-+++ -++- |.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~~-~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLEN-LKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHhh-hhhhhhcC
Confidence 99999999999999999999999999999999999999765 479999999954 46677888888864 3433 445
Q ss_pred C
Q 000979 840 P 840 (1202)
Q Consensus 840 ~ 840 (1202)
.
T Consensus 279 N 279 (582)
T KOG0062|consen 279 N 279 (582)
T ss_pred c
Confidence 4
No 439
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.79 E-value=1.8e-19 Score=207.07 Aligned_cols=118 Identities=24% Similarity=0.280 Sum_probs=103.9
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
..++.+++++++++.+||++..|...+ .|||||||||+|||||+.+|+||+|||||||||+.++..+++.++++.
T Consensus 102 ~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~ 176 (363)
T TIGR01186 102 PEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQ 176 (363)
T ss_pred CHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 345566778999999999888777764 799999999999999999999999999999999999999999999886
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.++|||+++|... ++.+.+|+|++|.+|++++.|+++++..
T Consensus 177 ~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 177 ATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 555788888777544 6889999999999999999999998864
No 440
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.6e-19 Score=198.27 Aligned_cols=115 Identities=27% Similarity=0.302 Sum_probs=100.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||++..++.++ .||||||||++|||||+.+|+||+|||||+|||..+...+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 111 EEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3445667889999999988887774 79999999999999999999999999999999999999999999998754
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|.+. .+.+.+|+|++|++|++++.|+++++.
T Consensus 186 ~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 186 LGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 5778888777554 677889999999999999999988764
No 441
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.8e-19 Score=193.97 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=102.7
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++|.++.+.++|+..||++-..-+ +....+|||||||||.||.||..+|++|+.||||||||.+...+|++.|+++.
T Consensus 123 ~~~ea~~~a~~~L~~Vgi~~~~~~~--~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~ 200 (316)
T COG0444 123 SKKEAKERAIELLELVGIPDPERRL--KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ 200 (316)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHH--hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH
Confidence 4566777788899999999743322 35678999999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++++|+. +|--.-+.+.+|+|+||..|++||.|+.+++..
T Consensus 201 ~e~~~aiilI-THDl~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 201 REKGTALILI-THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred HhcCCEEEEE-eCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 7667666654 335555888999999999999999999998763
No 442
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.5e-19 Score=200.78 Aligned_cols=117 Identities=25% Similarity=0.328 Sum_probs=101.7
Q ss_pred hhhhhHHHHHHHHHhCCc--ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 40 GQEANVITDYYLKVLGLD--VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~--~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
.++.++.++++++.+||+ +..|+.+ +.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.++++
T Consensus 116 ~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 116 EEEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 445566789999999997 5566655 589999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+++.++|||+++|... ++.+.+|+|++|++|++++.|+.+++.+
T Consensus 191 ~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 191 HKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7655788888877654 6778899999999999999999988753
No 443
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.2e-19 Score=201.25 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=108.5
Q ss_pred hhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++.+++++++++.+||. +-.+..+ +.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 117 KEKAEKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191 (288)
T ss_pred HHHHHHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 445566788999999996 4556554 5899999999999999999999999999999999999999999999876
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH---HHHhCCCCCCCCCChh
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVA 178 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~---~F~~lG~~~p~~~n~a 178 (1202)
+ .++||++++|.+ ..+.+.+|+|++|++|+++++|+++++.+ .+...|+.+|.....+
T Consensus 192 ~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 192 Q-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred H-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 4 578888887765 46778999999999999999999998753 3445666655544333
No 444
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.9e-19 Score=200.76 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=101.6
Q ss_pred hhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++.++.++++++.+||. +..|+.+ +.|||||||||+|||+|+.+|+||+|||||+|||+.+...+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~ 192 (290)
T PRK13634 118 EEDAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192 (290)
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 344456789999999997 5667766 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.+.++|||++.|.+. .+.+.+|+|++|++|++++.|+.+++.
T Consensus 193 ~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 193 KEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 655788888877665 677899999999999999999988774
No 445
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.79 E-value=1.4e-19 Score=207.50 Aligned_cols=115 Identities=25% Similarity=0.377 Sum_probs=103.8
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++.+++.+||.+..|+.++ .||||||||++||+||+.+|++|+|||||+|||+.+...+++.|+++..
T Consensus 147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~- 220 (340)
T PRK13536 147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA- 220 (340)
T ss_pred HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-
Confidence 3445567889999999999999985 7999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|.. .++-+.+|+|++|++|+++++|+.+++..
T Consensus 221 ~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 221 RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 588999987754 58889999999999999999999999875
No 446
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.3e-19 Score=206.33 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=104.5
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.++.++++++.+||.+..|... +.|||||||||+|||||+++|+||+|||||||||+.+..++.+.|+++.
T Consensus 109 ~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 109 PKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 34566778899999999998877765 5799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|+|+.+|.+. ++.+++|+|++|++|++++.|+++++.
T Consensus 184 ~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 184 QQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 666788888877554 789999999999999999999998875
No 447
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.79 E-value=2.2e-19 Score=223.88 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=108.4
Q ss_pred HHHhcCCCCCCCH--HHHHHH-hhhhh--hhhhHHHHHHHHHhCC-------cccccccccCCcccccCccccchhhHHH
Q 000979 17 REKAAGIKPDPDI--DVYMKA-IATEG--QEANVITDYYLKVLGL-------DVCADTMVGDEMIRGISGGQKKRVTTGE 84 (1202)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~~-~~~~~--~~~~~~v~~il~~lgL-------~~~~dT~VG~~~~~gLSGGQKqRvsIAr 84 (1202)
.++..+.+||... +.+.++ +.... +..++.+++.++..|| ++..||.|| +.++.||||||||++|||
T Consensus 404 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG-ENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec-CCCCcCCHHHHHHHHHHH
Confidence 3455677776433 222222 33221 2234445667776664 567899999 557889999999999999
Q ss_pred HHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 85 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 85 aLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|++++|+|++||||||+||..++..+.+.|++.. +++|.|++| |+.+..+.+|+|++|++|++++.|+|+++++
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiit---H~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIA---HRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEe---hhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999998864 344445555 5567899999999999999999999999974
No 448
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=6e-19 Score=168.55 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=103.2
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHH
Q 000979 30 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 109 (1202)
Q Consensus 30 ~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~ 109 (1202)
++-.+...+++++.+.+..++|+.|.|...+|..= -.|||||.|||||||||...|.+|++||||.+||++-..+
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaq 179 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHH
Confidence 35566678888999999999999999999998763 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCEEEEEecCCChH-HHhhhcceEEecCCcEEEEcCcc
Q 000979 110 IVNCLRQNIHINSGTAVISLLQPAPE-TYDLFDDIILLSDGQIVYQGPRE 158 (1202)
Q Consensus 110 vv~~L~~~a~~~~tTiIiaihQp~~s-~~~~fD~IvvL~~G~vvy~G~~~ 158 (1202)
|++.+++++..+-|-+|++ | --+ .-+-+.+++-|.+|++||+|+++
T Consensus 180 vv~iikel~~tgitqvivt-h--ev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 180 IVSIIKELAETGITQVIVT-H--EVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHhcCceEEEEE-e--ehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999886444444554 4 333 34567899999999999999975
No 449
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.79 E-value=2e-19 Score=224.27 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=96.4
Q ss_pred HHHHHHHHHhC-------CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 45 VITDYYLKVLG-------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 45 ~~v~~il~~lg-------L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
+.++..++..| |++..||.+| +.++.||||||||++|||||+++|+||+||||||+||+.++..+.+.|++.
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDGYDTVVG-ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCcccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 33455555555 5678899999 557889999999999999999999999999999999999999999999886
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
. .++|.+++| |++++.+.+|+|++|++|++++.|+|+++++
T Consensus 518 ~-~~~tvIiit---Hr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 518 M-KGRTTFIIA---HRLSTVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred h-cCCEEEEEE---ecHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 4 244555556 6668899999999999999999999999974
No 450
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.5e-19 Score=206.49 Aligned_cols=115 Identities=26% Similarity=0.320 Sum_probs=102.4
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||++..|+.+ +.||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++.++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 115 AEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE 189 (343)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999998888876 479999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|++. .+.+.+|+|++|++|++++.|+++++.
T Consensus 190 ~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 190 LGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5788888877664 677889999999999999999998875
No 451
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.79 E-value=2.7e-19 Score=204.68 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=101.5
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++..+.+.++++.+||++..++ ++ ....+|||||||||+|||||+.+|++|++||||||||..+..++++.|+++.+
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 34555678889999999865433 33 55689999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+++.+|... .+.+.+|+|+||++|++++.|+++++..
T Consensus 210 ~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 210 EFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred HcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 55777777766554 5567899999999999999999988863
No 452
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.2e-19 Score=189.96 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.|++.|+..|+.+-+|-.|| .|||||+|||-|||||+.+|++|+|||||+|+|+.++..+.+.|+++.++
T Consensus 115 ~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 115 KDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred HHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 446789999999999999999998 59999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|+||++..| --..+.+.||+|+.|+ +++++.|++++...
T Consensus 189 g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 189 GKTVLMVTH-DLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred CCEEEEEeC-CcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 888888744 6668899999999996 78899999988763
No 453
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.78 E-value=2e-19 Score=202.08 Aligned_cols=108 Identities=30% Similarity=0.430 Sum_probs=102.0
Q ss_pred HhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCC
Q 000979 53 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 132 (1202)
Q Consensus 53 ~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp 132 (1202)
++.|++++||.|| +.+.+|||||||||++||||-+||.+++||||-|-||+.-|..+.+++.+..++++++|+|| |
T Consensus 455 Il~lP~GYdT~iG-~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia---H 530 (580)
T COG4618 455 ILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA---H 530 (580)
T ss_pred HHhCcCCccCccC-CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe---c
Confidence 6799999999999 67899999999999999999999999999999999999999999999998777788888899 9
Q ss_pred ChHHHhhhcceEEecCCcEEEEcCcchHHHHH
Q 000979 133 APETYDLFDDIILLSDGQIVYQGPRELVLEFF 164 (1202)
Q Consensus 133 ~~s~~~~fD~IvvL~~G~vvy~G~~~el~~~F 164 (1202)
|++.....|+|+||++|++--+|+.+|++...
T Consensus 531 RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 531 RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999999999998754
No 454
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.78 E-value=3e-19 Score=220.42 Aligned_cols=103 Identities=27% Similarity=0.396 Sum_probs=90.5
Q ss_pred CcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChH
Q 000979 56 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 135 (1202)
Q Consensus 56 L~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s 135 (1202)
|++..||.+| ++++.||||||||++|||||+++|+||+|||||||||+.++..+.+.|++... +++|+|+..|++ +
T Consensus 440 l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~--~ 515 (544)
T TIGR01842 440 LPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRP--S 515 (544)
T ss_pred CccccccccC-CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH--H
Confidence 5667899998 66788999999999999999999999999999999999999999999988643 455666655554 6
Q ss_pred HHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 136 TYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 136 ~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.+.+|+|++|++|++++.|+|+++++
T Consensus 516 ~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 516 LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 789999999999999999999999864
No 455
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.78 E-value=2.3e-19 Score=204.07 Aligned_cols=115 Identities=25% Similarity=0.367 Sum_probs=102.6
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++.+++.+||++..|+.++ .||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++++.
T Consensus 110 ~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~- 183 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA- 183 (303)
T ss_pred HHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 3344567889999999999999885 7999999999999999999999999999999999999999999999864
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|++. ++.+.+|+|++|++|++++.|+++++.+
T Consensus 184 ~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 184 RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5788888877654 7778999999999999999999998864
No 456
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.5e-19 Score=206.50 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=104.8
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.+++++++++.+||.+-.|..+ .+|||||||||+|||||+++|+||+|||||||||..+...+.+.|+++.
T Consensus 122 ~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 196 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196 (377)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34556677899999999998887776 4799999999999999999999999999999999999999999999887
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.++|+|+++|.+. ++..++|+|++|++|++++.|+++++.+
T Consensus 197 ~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 197 ERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 666788888877554 8899999999999999999999988763
No 457
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.78 E-value=3.4e-19 Score=205.26 Aligned_cols=117 Identities=24% Similarity=0.279 Sum_probs=103.3
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++++++.+||++..|..+ ..|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 3455667899999999998888776 47999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+|+++| ...++.+++|+|++|++|++++.|+++++.+
T Consensus 185 ~~g~tii~vTH-d~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 185 ELKFTSVFVTH-DQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred hcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 55778777766 4458899999999999999999999988853
No 458
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.78 E-value=3.5e-19 Score=206.07 Aligned_cols=117 Identities=24% Similarity=0.272 Sum_probs=104.4
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.+.+.++.++++++.+||++..|..+ .+|||||||||+|||||+.+|++|+|||||||||..+...+.+.|+++.
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 34455667899999999999888877 4799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|+|+++|.+ .++..++|+|++|++|++++.|+++++.
T Consensus 192 ~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 192 RKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 76688888877754 5789999999999999999999998875
No 459
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.6e-19 Score=203.50 Aligned_cols=120 Identities=22% Similarity=0.212 Sum_probs=100.0
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++++++.+||.+-.+. . +....+|||||||||+|||||+.+|+||++||||||||..+..++++.|+++.+
T Consensus 124 ~~~~~~~~~~~L~~~gL~~~~~~-l-~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 124 KKTRRQRAIDLLNQVGIPDPASR-L-DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHHHHHHHCCCCChHHH-H-hCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999753211 1 133468999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++|+++++|... .+.+.+|+|+||++|++++.|+.+++.+
T Consensus 202 ~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 202 KENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 56777777666444 5668899999999999999999988863
No 460
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.7e-19 Score=206.76 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=103.2
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||.+..|..++ +|||||||||+|||||+.+|+||+|||||||||..+...+.+.|+++.++
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4455678999999999988888774 79999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|+|+++|++. ++.+.+|+|++|++|++++.|+++++..
T Consensus 183 ~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 183 LGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred hCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5788888877654 7889999999999999999999988753
No 461
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.9e-19 Score=195.50 Aligned_cols=113 Identities=26% Similarity=0.319 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
..+.++++++.+||.+..++.+ ..||||||||++|||||+++|+||+|||||+|||+.+...+.+.|++++++.+
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3456788999999988777765 47999999999999999999999999999999999999999999999876557
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+|||++.|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 196 ~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 196 ITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 88888877655 677799999999999999999988764
No 462
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.2e-19 Score=198.50 Aligned_cols=115 Identities=24% Similarity=0.259 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++++++.+||.+..++.++ .||||||||++|||||+.+|+||+|||||+|||..+...+.+.+++++...
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 210 (269)
T cd03294 136 EREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 344567889999999988888875 699999999999999999999999999999999999999999999987555
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|||++.|++. ++.+.+|++++|++|+++++|+++++.+
T Consensus 211 g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 211 QKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 788888877654 6778999999999999999999888753
No 463
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=5.2e-19 Score=202.05 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=99.8
Q ss_pred hhhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 39 EGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
.+.+.++.++++++.+||. +..|..+ +.|||||||||+|||||+.+|+||++||||||||..+..++++.|+++
T Consensus 126 ~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 126 SAAERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred CHHHHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 3445566789999999996 4667765 479999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++.++|+++++|. ...+.+.+|+|++|++|++++.|+.+++.+
T Consensus 201 ~~~~g~til~iTHd-l~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 201 QQELGLSYVFISHD-LSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 76557777665553 335556899999999999999999988864
No 464
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=5.2e-19 Score=219.11 Aligned_cols=103 Identities=28% Similarity=0.358 Sum_probs=90.7
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|+++.||.+| +++..||||||||++|||||+++|+||+|||||||||+.++..+.+.|++.. +++|+|+.. |+.
T Consensus 436 ~lp~gl~t~~~-~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~it--H~~ 510 (569)
T PRK10789 436 RLPQGYDTEVG-ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISA--HRL 510 (569)
T ss_pred hCcCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEe--cch
Confidence 56788999999 5678899999999999999999999999999999999999999999998864 345555544 455
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|+++++|+|+++++
T Consensus 511 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 511 SALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred hHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 7889999999999999999999999975
No 465
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=4e-19 Score=178.93 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=105.4
Q ss_pred CHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHH
Q 000979 28 DIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 106 (1202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~s 106 (1202)
++..=.+......++.+++|+.-|+.-+|= ++.|-+= ..+.+|||||+||++|||||.-+|+||+|||||||||+.|
T Consensus 107 NVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIs 184 (253)
T COG1117 107 NVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184 (253)
T ss_pred HHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchh
Confidence 333334555565677788888888888886 4666552 4457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 107 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 107 a~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
..+|=+.+.++. +.-||||.+| -....-+-.|+...+..|++||+|+.+++-
T Consensus 185 T~kIEeLi~eLk--~~yTIviVTH-nmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 185 TLKIEELITELK--KKYTIVIVTH-NMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHHHHH--hccEEEEEeC-CHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999988888864 5667777766 455778899999999999999999988774
No 466
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=5.9e-19 Score=194.29 Aligned_cols=113 Identities=24% Similarity=0.304 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
..+.++.+++.+||.+..+..++ .||||||||++|||||+.+|+||+|||||+|||..++..+.+.|++++++.+
T Consensus 113 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 187 (239)
T cd03296 113 IRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH 187 (239)
T ss_pred HHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 34567889999999887777764 7999999999999999999999999999999999999999999999876557
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+|||++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 188 ~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 188 VTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 88888877664 677889999999999999999988764
No 467
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.77 E-value=6.1e-19 Score=201.61 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=99.7
Q ss_pred hhhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHH
Q 000979 39 EGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 117 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~ 117 (1202)
.+++.++.++++++.+||. +..|... .+|||||||||+|||||+.+|++|++||||||||..+..++++.|+++
T Consensus 133 ~~~~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 133 SRQEVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CHHHHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3455667788999999994 4556655 589999999999999999999999999999999999999999999998
Q ss_pred hHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 118 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 118 a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++.++|+++.+|. ...+.+.+|+|+||.+|++++.|+.+++.+
T Consensus 208 ~~~~~~til~iTHd-l~~~~~~~dri~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 208 QREMGLSLIFIAHD-LAVVKHISDRVLVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred HHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 66557777776553 346667899999999999999999988763
No 468
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.77 E-value=5.1e-19 Score=196.97 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=114.2
Q ss_pred CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHH
Q 000979 28 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 107 (1202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa 107 (1202)
|+..-++...+.+++.+++|+++.+.|+|+|-.|.+- ++|||||||||||||||+++|++++||||.|.||....
T Consensus 95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR 169 (338)
T COG3839 95 NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169 (338)
T ss_pred HhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHH
Confidence 4445556666778899999999999999999999885 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 108 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 108 ~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+....++++-++.++|+|..+| .-.|...++|||+||++|++...|++.|+-+
T Consensus 170 ~~mr~ei~~lh~~l~~T~IYVTH-Dq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 170 VLMRSEIKKLHERLGTTTIYVTH-DQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcC-CHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999876666777777766 5569999999999999999999999999864
No 469
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.77 E-value=4.8e-19 Score=201.10 Aligned_cols=114 Identities=22% Similarity=0.318 Sum_probs=101.9
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.++++++.+||++..|..++ .||||||||++||+||+++|++|+|||||+|||+.+...+++.++++. +
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~ 181 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K 181 (301)
T ss_pred HHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C
Confidence 4445678999999999999988874 799999999999999999999999999999999999999999999875 3
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++||+++.|++. ++.+.+|+|++|++|++++.|+.+++..
T Consensus 182 -~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 182 -DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred -CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 588888877554 7889999999999999999999999875
No 470
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.77 E-value=8e-19 Score=200.99 Aligned_cols=116 Identities=25% Similarity=0.245 Sum_probs=102.9
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
.+.++.++++++.+||++..|..+ .+|||||||||+|||||+++|++|+|||||||||..+...+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999998888776 479999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|+|+++|.+ .++.+++|+|++|++|++++.|+++++.+
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 678888887765 47889999999999999999999988853
No 471
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.77 E-value=6.6e-19 Score=194.64 Aligned_cols=112 Identities=25% Similarity=0.286 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
.++.++++++.+||.+..|..+ ..||||||||++|||||+.+|+||+|||||+|||..+...+.+.|+++.++.+
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (243)
T TIGR02315 122 DKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG 196 (243)
T ss_pred HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3456788999999988777765 47999999999999999999999999999999999999999999998865557
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
+|+|++.|++. .+.+.+|++++|++|++++.|+++++
T Consensus 197 ~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 197 ITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 88888877655 56788999999999999999998775
No 472
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.2e-19 Score=190.67 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++.+++.+||++..|+.++ .||||||||++||+||+.+|++|+|||||+|||..+...+.+.|++++++
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 106 AERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 3345567899999999988888874 79999999999999999999999999999999999999999999998764
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
.++|+|++.|.+. ++.+.+|+|++|.+|++++.|+++++
T Consensus 181 ~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 181 FGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 4778888766544 67788999999999999999987654
No 473
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.2e-18 Score=198.44 Aligned_cols=114 Identities=25% Similarity=0.436 Sum_probs=96.9
Q ss_pred hhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 41 QEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
++..++++.+++.+||+ +..+.. ...||||||||++|||||+.+|+||+|||||||||+.++..+.+.|+++..
T Consensus 150 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 150 SEAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HHHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 44556788899999997 344444 458999999999999999999999999999999999999999999998764
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.++|||++.|.+. .+.+.+|+|++|++|++++.|+++++.
T Consensus 225 -~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 225 -NNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred -CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 5777777666543 567899999999999999999998875
No 474
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.7e-19 Score=184.13 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=100.8
Q ss_pred CHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHH
Q 000979 28 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 107 (1202)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa 107 (1202)
|+..-.+.....+.|++++++++|+..||.+..|.+= ++|||||||||||||||+.+|+||+||||-+|||+.++
T Consensus 92 NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR 166 (248)
T COG1116 92 NVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 (248)
T ss_pred hheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence 3334344444567778889999999999999998874 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCC
Q 000979 108 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 149 (1202)
Q Consensus 108 ~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G 149 (1202)
..+++.|.++-.+.++||+..+| -=.|.+.++|||+||+++
T Consensus 167 ~~lq~~l~~lw~~~~~TvllVTH-di~EAv~LsdRivvl~~~ 207 (248)
T COG1116 167 EELQDELLRLWEETRKTVLLVTH-DVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeC-CHHHHHhhhCEEEEecCC
Confidence 99999999998888888888766 455899999999999984
No 475
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.77 E-value=7.9e-19 Score=193.15 Aligned_cols=113 Identities=22% Similarity=0.302 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||++..|+.+ +.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|++++. .
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 192 (236)
T cd03219 119 EARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R 192 (236)
T ss_pred HHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C
Confidence 34556788999999998777776 47999999999999999999999999999999999999999999998765 6
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|+|++.|++. .+.+.+|+|++|++|++++.|+++++.
T Consensus 193 ~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 193 GITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 778888777554 677889999999999999999988764
No 476
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.1e-18 Score=197.00 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHHHhCCc-ccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 40 GQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~-~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
.++..+.++++++.+||. +..|+.+ +.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.++++.
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~ 192 (286)
T PRK13646 118 LDEVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192 (286)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 345566788999999997 6777765 5799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.++||+++.|+.. .+.+.+|+|++|++|++++.|+++++.+
T Consensus 193 ~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 193 TDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 656788888777554 5778899999999999999999887653
No 477
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-18 Score=195.23 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=101.0
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
.++.++.++++++.+||++-.|..++ .||||||||++|||||+.+|+||+|||||+|||..+...+++.+++++.
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 34455678999999999987777764 7999999999999999999999999999999999999999999999876
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
+.++|||++.|++.. + ..+|+|++|++|++++.|+.+++.
T Consensus 189 ~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 189 DYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred hcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 558899888887653 4 679999999999999999988765
No 478
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-18 Score=195.64 Aligned_cols=116 Identities=25% Similarity=0.291 Sum_probs=100.8
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++..+.++.+++.+||.+..|+.+ +.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++.
T Consensus 116 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~ 190 (283)
T PRK13636 116 DEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190 (283)
T ss_pred HHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 344566889999999998877776 479999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|+.. .+.+.+|+|++|++|++++.|+.+++..
T Consensus 191 ~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 191 LGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 4778887766544 4667899999999999999999988764
No 479
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=7.9e-19 Score=189.88 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++++++.+||.+..|..++ .||||||||++|||||+++|+||+|||||+|||..+...+.+.+++++.+.
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~ 180 (213)
T cd03259 106 EIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180 (213)
T ss_pred HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 344567889999999988888774 699999999999999999999999999999999999999999999987555
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEc
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G 155 (1202)
++||+++.|.+. .+.+.+|+|++|++|++++.|
T Consensus 181 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 181 GITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 788888777554 677889999999999999876
No 480
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.76 E-value=1e-18 Score=201.66 Aligned_cols=118 Identities=25% Similarity=0.274 Sum_probs=104.3
Q ss_pred hhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 39 EGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 39 ~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
...+.++.++++++.+||++..|..++ +|||||||||+|||||+.+|+||+|||||||||+.+..++++.|+++.
T Consensus 137 ~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 137 PEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 345556678899999999998888774 799999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.+.++|||+++|... ++.+++|+|++|.+|++++.|+++++..
T Consensus 212 ~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 212 AKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 655788888777554 6789999999999999999999998863
No 481
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.5e-18 Score=194.47 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++.+++.+||++..|..++ .||||||||++|||||+++|++|+|||||+|||+.+...+.+.+++++. .
T Consensus 114 ~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 187 (274)
T PRK13647 114 EVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q 187 (274)
T ss_pred HHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C
Confidence 445568889999999988888774 7999999999999999999999999999999999999999999999865 4
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
++||+++.|.+. .+.+.+|+|++|++|++++.|+++++
T Consensus 188 g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 188 GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 778887766543 56688999999999999999998654
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=6.5e-18 Score=175.70 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEec
Q 000979 756 LSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 831 (1202)
Q Consensus 756 LSgGqrqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 831 (1202)
||||||||++||++|+ .+|+++++||||++||+..+..+.+.|++++++|.|+|+++|+++ ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998777899999999974 5678999999986
Q ss_pred CC
Q 000979 832 GG 833 (1202)
Q Consensus 832 gG 833 (1202)
.|
T Consensus 173 ~~ 174 (178)
T cd03239 173 VH 174 (178)
T ss_pred eC
Confidence 43
No 483
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.76 E-value=7.3e-19 Score=192.07 Aligned_cols=113 Identities=26% Similarity=0.280 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++.+++.+||++..|+.++ .||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++.
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 445567889999999988888764 799999999999999999999999999999999999999999999877655
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
++|||++.|++. ++.+.+|+|++|++|++++.|+..++
T Consensus 165 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 165 RVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 788888877654 67788999999999999999976654
No 484
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-18 Score=202.97 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..+ +.||||||||++|||||+.+|+||+|||||||||+.+...+++.|+++.++
T Consensus 139 ~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~ 213 (400)
T PRK10070 139 EERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213 (400)
T ss_pred HHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 445567888999999998888776 479999999999999999999999999999999999999999999998655
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++|||++.|.+. ++.+.+|+|++|++|++++.|+++++..
T Consensus 214 ~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 214 HQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 6788888877554 6788999999999999999999988753
No 485
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.76 E-value=8.3e-19 Score=191.67 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCC
Q 000979 43 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 122 (1202)
Q Consensus 43 ~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~ 122 (1202)
.++.++++++.+||.+..+..+. ..+||||||||++|||||+.+|++|+|||||+|||..++..+.+.|+++++ +
T Consensus 116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~- 190 (227)
T cd03260 116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E- 190 (227)
T ss_pred HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-
Confidence 34567889999999987777641 257999999999999999999999999999999999999999999999764 4
Q ss_pred CEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchH
Q 000979 123 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELV 160 (1202)
Q Consensus 123 tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el 160 (1202)
+|+|++.|++. .+.+.+|+|++|++|++++.|+++++
T Consensus 191 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 191 YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCcccC
Confidence 78887777554 67788999999999999999998753
No 486
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=1.8e-18 Score=183.65 Aligned_cols=135 Identities=23% Similarity=0.254 Sum_probs=120.9
Q ss_pred CCCCCCCHH----HHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeC
Q 000979 22 GIKPDPDID----VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 97 (1202)
Q Consensus 22 ~~~~~~~~~----~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDE 97 (1202)
++.|+..+. .=++...+.++|++++..+.|+..||+.-+|.+.. +||||+||||-+||||..+|+||++||
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHHHHHHHHccCCCEEEecC
Confidence 677775554 33455788889999999999999999999999874 899999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 98 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 98 pTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
|-||||+--..+.++.|.++-++-++|||... |--.|.++..|||.+|.+|++|..|+++|.+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999998877778888754 48889999999999999999999999999983
No 487
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.76 E-value=1.1e-18 Score=190.92 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHhCCccc---ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 42 EANVITDYYLKVLGLDVC---ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~---~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
+.++.++++++.+||++. .+.. .+.|||||||||+|||+|+++|+||+|||||+|||..+...+.+.+++++
T Consensus 98 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~ 172 (230)
T TIGR02770 98 QARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172 (230)
T ss_pred HHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHH
Confidence 334568889999999843 3444 45799999999999999999999999999999999999999999999876
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
.+.++|||++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 173 ~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 173 QLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 545788888877665 677889999999999999999988875
No 488
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.76 E-value=1.1e-18 Score=191.44 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.++.+++.+||++..++.+ +.||||||||++|||||+.+|++|+|||||+|||..+...+.+.|+++++ .
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~ 182 (232)
T cd03218 109 EREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R 182 (232)
T ss_pred HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C
Confidence 34556788999999998888776 47999999999999999999999999999999999999999999998764 5
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|+|++.|++. ++.+.+|+|++|++|++++.|+++++.
T Consensus 183 ~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 183 GIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 778888777555 888999999999999999999988764
No 489
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=192.98 Aligned_cols=169 Identities=26% Similarity=0.372 Sum_probs=121.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCceEEEEEEEcCccCCc------------ccccc----------eEEEee
Q 000979 638 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------------ETFAR----------ISGYCE 695 (1202)
Q Consensus 638 ~i~~Ge~~al~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------------~~~~~----------~~~~v~ 695 (1202)
..++|++++|+||||-||||.+|+|+|...+. -|+ .++.|-.+ ..+++ ..-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 45799999999999999999999999976532 221 11111000 00000 111221
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000979 696 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 775 (1202)
Q Consensus 696 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 775 (1202)
--|... .-||.|-|.-. ..+-..+++++.++|.+..|+-+ +.|||||-||++||.+++++.+
T Consensus 172 ~iPk~~-KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVV-KGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHh-cchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 111111 12566644311 11124688999999999988874 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-hcceEEEEe
Q 000979 776 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMK 830 (1202)
Q Consensus 776 illlDEPtsgLD~~~~~~v~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~ 830 (1202)
++++|||||-||...+..+.+.++++++.+++||++.||+. +.+ +.|-+.++.
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~Y 287 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA--VLDYLSDFVHILY 287 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH--HHHHhhheeEEEe
Confidence 99999999999999999999999999988999999999975 444 467777775
No 490
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.76 E-value=1.2e-18 Score=188.61 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=96.5
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..|..++ .||||||||++|||+|+.+|+|++|||||+|||..+...+.+.+++++.+
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3445567889999999988888774 79999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEc
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 155 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G 155 (1202)
.++|+|++.|++. ++.+.+|+|++|.+|+++++|
T Consensus 180 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 180 LGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 5788888888664 677889999999999999987
No 491
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-18 Score=189.53 Aligned_cols=111 Identities=24% Similarity=0.271 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++.+++.+||.+..+..++ .||||||||++|||||+++|++|+|||||+|||..+...+.+.++++..+.
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344567889999999988887764 799999999999999999999999999999999999999999999876555
Q ss_pred CCEEEEEecCCChHHHhhhcceEEec--CCcEEEEcCcc
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLS--DGQIVYQGPRE 158 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~--~G~vvy~G~~~ 158 (1202)
++|||++.|++. ++.+.+|+|++|+ +|++++.++.+
T Consensus 182 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 182 GKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 788888877654 6778899999999 79999998864
No 492
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-18 Score=191.35 Aligned_cols=114 Identities=27% Similarity=0.322 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++++++.+||++..|..+ ..||||||||++|||+|+.+|++|+|||||+|||..+...+.+.+++++++.
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (233)
T cd03258 116 EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190 (233)
T ss_pred HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence 34556788999999998888776 4799999999999999999999999999999999999999999999977655
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|+|++.|++. .+.+.+|++++|++|++++.|+++++.
T Consensus 191 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 191 GLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 788888877654 667889999999999999999987764
No 493
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.8e-18 Score=194.71 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=102.2
Q ss_pred hhhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhH
Q 000979 40 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 119 (1202)
Q Consensus 40 ~~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~ 119 (1202)
..+.++.++.+++.+||++..++.++ .||||||||++|||+|+++|++|+|||||+|||..+...+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34456678999999999998888874 7999999999999999999999999999999999999999999998865
Q ss_pred hCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 120 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 120 ~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
+.++||+++.|++.. + ..+|++++|++|++++.|+++++..
T Consensus 193 ~~g~tillvtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 193 KYGITIILITHYMEE-A-VEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred hcCCEEEEEecChHH-H-hcCCEEEEEECCEEEEecCHHHHhc
Confidence 557888888887774 3 4599999999999999999988754
No 494
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=8.5e-19 Score=217.52 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=90.5
Q ss_pred CCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhCCCEEEEEecCCCh
Q 000979 55 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 134 (1202)
Q Consensus 55 gL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~~tTiIiaihQp~~ 134 (1202)
.|++..||.+| +.+..||||||||++|||||+++|+||+|||||||||..++..+.+.|++.. +++|+|+.. |+.
T Consensus 456 ~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~is--H~~ 530 (585)
T TIGR01192 456 KRSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIA--HRL 530 (585)
T ss_pred hccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEE--cCh
Confidence 56778899999 5678899999999999999999999999999999999999999999998763 345555544 455
Q ss_pred HHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 135 ETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 135 s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++.+.+|+|++|++|++++.|+|+++++
T Consensus 531 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 531 STVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 7789999999999999999999999975
No 495
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.5e-18 Score=195.04 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=102.3
Q ss_pred hhhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHh
Q 000979 41 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 120 (1202)
Q Consensus 41 ~~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~ 120 (1202)
++.++.++++++.+||.+..++.++ .||||||||++|||||+.+|++|+|||||+|||..++..+.+.++++..+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3445568899999999988888774 79999999999999999999999999999999999999999999998765
Q ss_pred CCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 121 NSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 121 ~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
.++||+++.|++. ++.+.+|+|++|++|++++.|+++++.+
T Consensus 187 ~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 187 YGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 5788888877655 6778999999999999999999988863
No 496
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.76 E-value=1.8e-18 Score=190.10 Aligned_cols=114 Identities=23% Similarity=0.299 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++++++.+||++..|+.++ .||||||||++|||||+++|+|++|||||+|||..+...+.+.|++++++.
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 345567889999999988887764 799999999999999999999999999999999999999999999987545
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|+|++.|.+..- ..+|+|++|.+|++++.|+++++.+
T Consensus 183 ~~tiii~sH~~~~~--~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 183 GLSVLWATHLVDEI--EADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCEEEEEecChhhH--hhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 78888887777643 4599999999999999999887764
No 497
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-18 Score=199.64 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHhCCccc---ccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHh
Q 000979 42 EANVITDYYLKVLGLDVC---ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 118 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~---~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a 118 (1202)
+.++.++++++.+||.+- .+... .+|||||||||+|||||+.+|+||+|||||||||..+..++.+.|+++.
T Consensus 131 ~~~~~~~~~L~~~gL~~~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 205 (330)
T PRK15093 131 WRKRRAIELLHRVGIKDHKDAMRSFP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN 205 (330)
T ss_pred HHHHHHHHHHHHCCCCChHHHHhCCc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 345567889999999853 34444 5899999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 119 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 119 ~~~~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++.++|+|++.|.. ..+.+.+|+|++|.+|++++.|+.+++.
T Consensus 206 ~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 206 QNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 65567777665543 3555789999999999999999988875
No 498
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.76 E-value=1.3e-18 Score=202.46 Aligned_cols=113 Identities=24% Similarity=0.394 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+.++.+++.++.+||.+-.|..+ ++||||||||++|||||+.+|+||+|||||+|||..+..++.+.|+++++ .
T Consensus 115 ~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~ 188 (402)
T PRK09536 115 TDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D 188 (402)
T ss_pred HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c
Confidence 44567899999999999888877 47999999999999999999999999999999999999999999999875 5
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 161 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~ 161 (1202)
++|||+++|. ..++.+.+|+|++|++|++++.|++++++
T Consensus 189 g~TIIivsHd-l~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 189 GKTAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCEEEEEECC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 7888887764 44777999999999999999999998865
No 499
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3e-18 Score=191.90 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhCCcccccccccCCcccccCccccchhhHHHHHhcCCeEeeeeCCCccccHHHHHHHHHHHHHHhHhC
Q 000979 42 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 121 (1202)
Q Consensus 42 ~~~~~v~~il~~lgL~~~~dT~VG~~~~~gLSGGQKqRvsIAraLv~~P~ILlLDEpTSGLDs~sa~~vv~~L~~~a~~~ 121 (1202)
+..+.++.+++.+||.+..|+.+ +.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++....
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 192 (269)
T PRK13648 118 EMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192 (269)
T ss_pred HHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34456788999999998777765 4799999999999999999999999999999999999999999999876545
Q ss_pred CCEEEEEecCCChHHHhhhcceEEecCCcEEEEcCcchHHH
Q 000979 122 SGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 162 (1202)
Q Consensus 122 ~tTiIiaihQp~~s~~~~fD~IvvL~~G~vvy~G~~~el~~ 162 (1202)
++|||++.|++. ++. .+|+|++|++|++++.|+++++.+
T Consensus 193 ~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 193 NITIISITHDLS-EAM-EADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCEEEEEecCch-HHh-cCCEEEEEECCEEEEecCHHHHhc
Confidence 789998888775 344 599999999999999999988753
No 500
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.76 E-value=1.8e-18 Score=184.55 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=107.7
Q ss_pred eecceEEEeCCe-EEEEEcCCCCCHHHHHHHHh--------CCCCCceEEEEEEEcCccCCcccccceEEEeecCCCCCC
Q 000979 632 LNGVSGAFRPGV-LTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 702 (1202)
Q Consensus 632 L~~vs~~i~~Ge-~~al~G~sGaGKSTLl~~l~--------g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~ 702 (1202)
.-++|+++.+|+ +++|.|||||||||||++|+ |...+ ... ...++|+.|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~--------------~~~~~~~~~~~~~-- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAE--------------GSSLPVFENIFAD-- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccc--------------cccCcCccEEEEe--
Confidence 557999999995 89999999999999999997 32211 000 0012333332100
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000979 703 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 782 (1202)
Q Consensus 703 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~illlDEP 782 (1202)
++..+..+. +.+.+|+||||++.|+++ +.+|+++++|||
T Consensus 79 -----------------------------------lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp 117 (200)
T cd03280 79 -----------------------------------IGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDEL 117 (200)
T ss_pred -----------------------------------cCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCC
Confidence 011000111 124699999999999988 489999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCCHHHHHhcceEEEEecCCEEEEEcC
Q 000979 783 TSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 840 (1202)
Q Consensus 783 tsgLD~~~~~~v~-~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gG~~~~~G~ 840 (1202)
|+|||+..+..+. ..++++.+.|.|+|++||+. ++.+.+|+++.|.+ |++.+.++
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~~~~ 173 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEFDPE 173 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEEecC
Confidence 9999999999986 46788777799999999984 57899999999985 79988753
Done!